RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15896
(492 letters)
>d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 256
Score = 212 bits (540), Expect = 3e-66
Identities = 84/257 (32%), Positives = 140/257 (54%), Gaps = 4/257 (1%)
Query: 102 PLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKPGLFEMS 161
PLW P + EE+ FY+ ISN + P +V H+ + L +++L+ P+ P S
Sbjct: 4 PLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES 63
Query: 162 RETEVGVSLYTRRILIKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLRN 221
++ + + LY RR+ I +AE+++P+WL FVKGVVDSED+PLNLSRE+LQ + ++ +R
Sbjct: 64 KKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRK 123
Query: 222 VLTTRILKFLQDRSKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQE 281
+ ++++ + ++ E + FY +S IK G+ S E
Sbjct: 124 NIVKKLIEAFNEIAEDS-EQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDE 182
Query: 282 AGTLITLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELIL 341
L +L +Y+ ++ E QK+IYY+ S SP+L+AL+ + +VLF +P DE
Sbjct: 183 ---LTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYAF 239
Query: 342 LQLRSFQNFNLTSVEKE 358
QL+ F+ L + K+
Sbjct: 240 TQLKEFEGKTLVDITKD 256
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli
[TaxId: 562]}
Length = 115
Score = 72.2 bits (177), Expect = 4e-16
Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 385 LVSWIEEKMKNKVHSVKITTKLDSHPCVVTVEEMAAARHFLKTQSQNLNEEQRFSLLQPR 444
+ ++ + +V V++T +L P +V+ + + K + +
Sbjct: 2 FIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVK---YI 58
Query: 445 LEINPKHPVIKKLASLSSSNPALAELVVQQLFSNAMVVAG-LVEDPR 490
E+NP H ++K+ A + + A V+ L A++ +EDP
Sbjct: 59 FELNPDHVLVKRAA--DTEDEAKFSEWVELLLDQALLAERGTLEDPN 103
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 61.3 bits (148), Expect = 2e-11
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 1 SGTYEITECPTAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVND 54
S T +GTK+++HLK D E+ +E+ + +++K+S F+ PI +
Sbjct: 153 SFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFV 206
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 213
Score = 57.4 bits (138), Expect = 4e-10
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 2 GTYEITECPTAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVND 54
+GT + + LK D E+ +E+ + VI+++S FV PI +
Sbjct: 156 TVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVV 208
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId:
9615]}
Length = 227
Score = 57.4 bits (138), Expect = 5e-10
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 4 YEITECPTAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQT-NKIQP 62
T +GT I + LK + ++ + T+ N+++KYS F+N PI+V ++T +
Sbjct: 160 IADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKT 219
Query: 63 LWIME 67
+W E
Sbjct: 220 VWDWE 224
>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter
jejuni [TaxId: 197]}
Length = 360
Score = 32.2 bits (73), Expect = 0.13
Identities = 12/47 (25%), Positives = 14/47 (29%), Gaps = 8/47 (17%)
Query: 400 VKITTKLDSHPCVVT-----VEEMAA---ARHFLKTQSQNLNEEQRF 438
+K K PCV M A L S NLN +
Sbjct: 312 LKFELKGRHDPCVGVRGSVVASAMVRLVLADCLLLNASANLNNLKNA 358
>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 356
Score = 29.4 bits (65), Expect = 0.89
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 25 DCREFADEQTVLNVIRKYSNFVNSPI-FVNDNQTNKIQPLWIMEPKSVKLEEHVEFYRYI 83
+ + K + PI F +D+ I+ L ++ + E+ + ++
Sbjct: 246 PWLGAQTAEIAEFLGPKVDGLMFIPIAFTSDH----IETLHEIDLGVIGESEYKDKFKRC 301
Query: 84 SNSNDQPRFV 93
+ N F+
Sbjct: 302 ESLNGNQTFI 311
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40,
RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}
Length = 85
Score = 25.5 bits (56), Expect = 5.0
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 200 DIPLNLSRELL--QNSPLINKLRNVLTTRI 227
D+ LN +R+LL + PL+ L +
Sbjct: 6 DVNLNFARQLLFNNDFPLLKVLAAHTKFEV 35
>d2yzca1 d.96.1.4 (A:11-141) Urate oxidase (uricase) {Arthrobacter
globiformis [TaxId: 1665]}
Length = 131
Score = 26.2 bits (58), Expect = 5.4
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 9/40 (22%)
Query: 393 MKNKVHSVKITTKLDSHPCVVTVEEMAA--ARHFLKTQSQ 430
KN V+ + T EE +HF +
Sbjct: 60 QKNTVY---AFAR----DGFATTEEFLLRLGKHFTEGFDW 92
>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley
(Petroselinum crispum), PAL1 [TaxId: 4043]}
Length = 692
Score = 26.8 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 195 VVDSEDIPLNLSRELLQNSPLINKLRNVLTTRILK 229
VVD E I + PL+ KLR L LK
Sbjct: 545 VVDREYIFAYIDDPCSATYPLMQKLRQTLVEHALK 579
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.379
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,752,939
Number of extensions: 82842
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 18
Length of query: 492
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 403
Effective length of database: 1,185,626
Effective search space: 477807278
Effective search space used: 477807278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)