BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15899
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K2P|A Chain A, Hiv-1 Reverse Transcriptase Isolated Rnaseh Domain With
The Inhibitor Beta-Thujaplicinol Bound At The Active
Site
pdb|3K2P|B Chain B, Hiv-1 Reverse Transcriptase Isolated Rnaseh Domain With
The Inhibitor Beta-Thujaplicinol Bound At The Active
Site
Length = 136
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 1 MFHCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSA 58
+ + +N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 45 LTNTTNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE- 99
Query: 59 WCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 100 ----QLIKKEKVYLAWVPAHKGIGGNEQVDK 126
>pdb|1HRH|A Chain A, Crystal Structure Of The Ribonuclease H Domain Of Hiv-1
Reverse Transcriptase
pdb|1HRH|B Chain B, Crystal Structure Of The Ribonuclease H Domain Of Hiv-1
Reverse Transcriptase
Length = 136
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 1 MFHCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSA 58
+ + +N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 43 LTNTTNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE- 97
Query: 59 WCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 98 ----QLIKKEKVYLAWVPAHKGIGGNEQVDK 124
>pdb|3LP3|A Chain A, P15 Hiv Rnaseh Domain With Inhibitor Mk3
pdb|3LP3|B Chain B, P15 Hiv Rnaseh Domain With Inhibitor Mk3
Length = 138
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 1 MFHCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSA 58
+ + +N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 45 LTNTTNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE- 99
Query: 59 WCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 100 ----QLIKKEKVYLAWVPAHKGIGGNEQVDK 126
>pdb|1RDH|A Chain A, Crystallographic Analyses Of An Active Hiv-1 Ribonuclease
H Domain Show Structural Features That Distinguish It
From The Inactive Form
pdb|1RDH|B Chain B, Crystallographic Analyses Of An Active Hiv-1 Ribonuclease
H Domain Show Structural Features That Distinguish It
From The Inactive Form
Length = 146
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 1 MFHCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSA 58
+ + +N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 55 LTNTTNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE- 109
Query: 59 WCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 110 ----QLIKKEKVYLAWVPAHKGIGGNEQVDK 136
>pdb|1O1W|A Chain A, Solution Structure Of The Rnase H Domain Of The Hiv-1
Reverse Transcriptase In The Presence Of Magnesium
Length = 138
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 1 MFHCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSA 58
+ +N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 47 LTDTTNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE- 101
Query: 59 WCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 102 ----QLIKKEKVYLAWVPAHKGIGGNEQVDK 128
>pdb|1F21|A Chain A, Divalent Metal Cofactor Binding In The Kinetic Folding
Trajectory Of E. Coli Ribonuclease Hi
Length = 155
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H + +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEHAEV--ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERADELARAAAMNPTLE 147
>pdb|1G15|A Chain A, Co-Crystal Of E. Coli Rnase Hi With Two Mn2+ Ions Bound In
The The Active Site
Length = 155
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H + +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEHAEV--ILSTDSQYVRQGITQWIHNWKARGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERADELARAAAMNPTLE 147
>pdb|1JL1|A Chain A, D10a E. Coli Ribonuclease Hi
Length = 155
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H + +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEHAEV--ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERADELARAAAMNPTLE 147
>pdb|1JXB|A Chain A, I53a, A Point Mutant Of The Cysteine-Free Variant Of E.
Coli Rnase Hi
Length = 155
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A + L ++K H + +L +DS G +A P
Sbjct: 42 TTNNRMELMAAAVALEALKEHAEV--ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERADELARAAAMNPTLE 147
>pdb|3AA2|A Chain A, A52i E. Coli Rnase Hi
Length = 155
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+AI++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAIIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|1RBV|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G +A A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADAKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|3AA4|A Chain A, A52v E.Coli Rnase Hi
Length = 155
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A+++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAVIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|3AA3|A Chain A, A52l E. Coli Rnase Hi
Length = 155
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A+++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMALIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|1GOC|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 156
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANPYLSCPIISQIYSA----- 58
+N EL+A ++ L ++K H +L +DS AI ++ +A
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQAITQGWIHNWKKRGWKTADKKPV 99
Query: 59 -----WCDLKT-VGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
W L +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 KNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 148
>pdb|3AA5|X Chain X, A52f E.Coli Rnase Hi
Length = 155
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAFIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|1RBT|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADGKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|1LAV|A Chain A, Stabilization Of Escherichia Coli Ribonuclease Hi By
Cavity- Filling Mutations Within A Hydrophobic Core
Length = 155
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYLRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|1GOB|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 155
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQAITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|1LAW|A Chain A, Stabilization Of Escherichia Coli Ribonuclease Hi By
Cavity- Filling Mutations Within A Hydrophobic Core
Length = 155
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYIRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|1RCH|A Chain A, Solution Nmr Structure Of Ribonuclease Hi From Escherichia
Coli, 8 Structures
pdb|1RDD|A Chain A, Crystal Structure Of Escherichia Coli Rnase Hi In Complex
With Mg2+ At 2.8 Angstroms Resolution: Proof For A
Single Mg2+ Site
pdb|2RN2|A Chain A, Structural Details Of Ribonuclease H From Escherichia Coli
As Refined To An Atomic Resolution
Length = 155
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|3HYF|A Chain A, Crystal Structure Of Hiv-1 Rnase H P15 With Engineered E.
Coli Loop And Active Site Inhibitor
pdb|3QIN|A Chain A, Crystal Structure Of Hiv-1 Rnase H P15 With Engineered E.
Coli Loop And Pyrimidinol Carboxylic Acid Inhibitor
pdb|3QIO|A Chain A, Crystal Structure Of Hiv-1 Rnase H With Engineered E. Coli
Loop And N- Hydroxy Quinazolinedione Inhibitor
Length = 150
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 25/105 (23%)
Query: 1 MFHCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIAN---------------- 44
+ +N EL AI L L+ + +V+DS +L I
Sbjct: 44 LTDTTNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIITQWIHNWKKRGWKTADKK 99
Query: 45 PYLSCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
P + +++QI + + + V L W P+H GI GNE VD+
Sbjct: 100 PVKNVDLVNQIIE-----QLIKKEKVYLAWVPAHKGIGGNEQVDK 139
>pdb|1RDA|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|1RBU|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADNKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|1GOA|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 156
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 25/115 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM-----------------GSLSAIANPY 46
+N EL+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQGITQGWIHNWKKRGWKTADKKPV 99
Query: 47 LSCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 KNVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 148
>pdb|2Z1G|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105K)
Length = 155
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDS----------------MGSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSHYVRKGITEWIHNWKKRGWKKADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWKRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|2YNF|A Chain A, Hiv-1 Reverse Transcriptase Y188l Mutant In Complex With
Inhibitor Gsk560
Length = 563
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 476 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 526
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 527 QLIKKEKVYLAWVPAHKGIGGNEQVDK 553
>pdb|1S1W|A Chain A, Crystal Structure Of V106a Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1S1T|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
pdb|1S1U|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1S1V|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|3DOL|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw695634
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1S1X|A Chain A, Crystal Structure Of V108i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1LWE|A Chain A, Crystal Structure Of M41lT215Y MUTANT HIV-1 Reverse
Transcriptase (Rtmn) In Complex With Nevirapine
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1RT3|A Chain A, Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed
With 1051u91
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1JKH|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1JLA|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|1JLB|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1JLC|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1JLE|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase
pdb|1JLG|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|3MED|A Chain A, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc125
pdb|3MEG|A Chain A, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc278
pdb|2WOM|A Chain A, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (K103n)
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|3KJV|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Dna
pdb|3KK1|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Nuceotide
Inhibitor Gs- 9148-Diphosphate Bound In Nucleotide Site
pdb|3KK2|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Datp Bound In
The Nucleotide Binding Site
pdb|3KK3|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Gs-9148
Terminated Primer
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|3FFI|A Chain A, Hiv-1 Rt With Pyridone Non-Nucleoside Inhibitor
Length = 561
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 474 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 524
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 525 QLIKKEKVYLAWVPAHKGIGGNEQVDK 551
>pdb|2JLE|A Chain A, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
pdb|2JLE|B Chain B, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
Length = 566
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|3DRS|A Chain A, Hiv Reverse Transcriptase K103n Mutant In Complex With
Inhibitor R8d
pdb|3LP0|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP1|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP2|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3T1A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M05
pdb|3T1A|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M05
pdb|3TAM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M06
Length = 563
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 476 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 526
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 527 QLIKKEKVYLAWVPAHKGIGGNEQVDK 553
>pdb|3DRR|A Chain A, Hiv Reverse Transcriptase Y181c Mutant In Complex With
Inhibitor R8e
Length = 563
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 476 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 526
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 527 QLIKKEKVYLAWVPAHKGIGGNEQVDK 553
>pdb|3DI6|A Chain A, Hiv-1 Rt With Pyridazinone Non-Nucleoside Inhibitor
pdb|3DYA|A Chain A, Hiv-1 Rt With Non-Nucleoside Inhibitor Annulated Pyrazole
1
pdb|3E01|A Chain A, Hiv-Rt With Non-Nucleoside Inhibitor Annulated Pyrazole 2
pdb|3M8P|A Chain A, Hiv-1 Rt With Nnrti Tmc-125
pdb|3M8Q|A Chain A, Hiv-1 Rt With Aminopyrimidine Nnrti
pdb|3NBP|A Chain A, Hiv-1 Reverse Transcriptase With Aminopyrimidine Inhibitor
2
Length = 561
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|3DMJ|A Chain A, Crystal Structure Of Hiv-1 V106a And Y181c Mutant Reverse
Transcriptase In Complex With Gw564511
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|3DM2|A Chain A, Crystal Structure Of Hiv-1 K103n Mutant Reverse
Transcriptase In Complex With Gw564511.
pdb|3DOK|A Chain A, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw678248
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|2RF2|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor 7e
(Nnrti)
pdb|3C6T|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 14
pdb|3C6U|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 22
pdb|3DRP|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor R8e
pdb|3I0R|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 3
pdb|3I0S|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 7
pdb|3T19|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Wild
Type) In Complex With Inhibitor M05
pdb|3T19|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Wild
Type) In Complex With Inhibitor M05
pdb|2YNG|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk560
pdb|2YNH|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk500
pdb|2YNI|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk952
Length = 563
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 476 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 526
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 527 QLIKKEKVYLAWVPAHKGIGGNEQVDK 553
>pdb|1LWF|A Chain A, Crystal Structure Of A Mutant Hiv-1 Reverse Transcriptase
(rtmq+m184v: M41l/d67n/k70r/m184v/t215y) In Complex With
Nevirapine
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|2RKI|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Triazole Derived Nnrti
pdb|3LAK|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
pdb|3LAK|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
pdb|3LAL|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAL|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAM|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAN|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3MEC|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc125
pdb|3MEE|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc278
pdb|2WON|A Chain A, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (Wild-Type).
pdb|3QIP|A Chain A, Structure Of Hiv-1 Reverse Transcriptase In Complex With
An Rnase H Inhibitor And Nevirapine
pdb|4I7F|A Chain A, Hiv-1 Reverse Transcriptase In Complex With A Phosphonate
Analog Of Nevirapine
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1LW0|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1LW2|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With 1051u91
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1REV|A Chain A, Hiv-1 Reverse Transcriptase
pdb|1RT2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Tnk-651
pdb|1RT1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Mkc-442
pdb|1KLM|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Bhap U-90152
pdb|1RT4|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc781
pdb|1RT5|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc10
pdb|1RT6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc38
pdb|1RT7|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc84
pdb|1DTT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-2 (Pett130a94)
pdb|1DTQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-1 (Pett131a94)
pdb|1C1B|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gca-186
pdb|1C1C|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Tnk-6123
pdb|1C0T|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+21.1326
pdb|1C0U|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+50.0934
pdb|1EP4|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With S-1153
pdb|1JLQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With 739w94
pdb|1TKT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw426318
pdb|1TKX|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw490745
pdb|1TKZ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw429576
pdb|1TL1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw451211
pdb|1TL3|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw450557
pdb|3DLE|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gf128590.
pdb|3DLG|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw564511.
pdb|1RTJ|A Chain A, Mechanism Of Inhibition Of Hiv-1 Reverse Transcriptase By
Non-Nucleoside Inhibitors
pdb|1RTI|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRT|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1RTH|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRU|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1JLF|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1LWC|A Chain A, Crystal Structure Of M184v Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1S6P|A Chain A, Crystal Structure Of Human Immunodeficiency Virus Type 1
Reverse Transcriptase (Rt) In Complex With
Janssen-R100943
pdb|1S6Q|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R147681
pdb|1S9E|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R129385
pdb|1S9G|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R120394.
pdb|1SUQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R185545
pdb|2B6A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Thr-50
pdb|2B5J|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R165481
pdb|2BAN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R157208
pdb|2BE2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With R221239
Length = 560
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1HNI|A Chain A, Structure Of Hiv-1 Reverse Transcriptase In A Complex With
The Nonnucleoside Inhibitor Alpha-Apa R 95845 At 2.8
Angstroms Resolution
pdb|1HNV|A Chain A, Structure Of Hiv-1 Rt(Slash)tibo R 86183 Complex Reveals
Similarity In The Binding Of Diverse Nonnucleoside
Inhibitors
pdb|1TVR|A Chain A, Hiv-1 Rt9-Cl Tibo
pdb|2HMI|A Chain A, Hiv-1 Reverse TranscriptaseFRAGMENT OF FAB 28DNA COMPLEX
Length = 558
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1HYS|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 553
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1HMV|A Chain A, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1TV6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Cp-94,707
pdb|1HMV|C Chain C, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1HMV|E Chain E, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1HMV|G Chain G, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
Length = 560
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1UWB|A Chain A, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo
Length = 558
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1QE1|A Chain A, Crystal Structure Of 3tc-Resistant M184i Mutant Of Hiv-1
Reverse Transcriptase
pdb|1J5O|A Chain A, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
Length = 558
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|3QLH|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Manicol At The
Rnase H Active Site And Tmc278 (rilpivirine) At The
Nnrti Binding Pocket
Length = 555
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 474 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 524
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 525 QLIKKEKVYLAWVPAHKGIGGNEQVDK 551
>pdb|3QO9|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tsao-T, A Non-Nucleoside Rt Inhibitor
(Nnrti)
Length = 557
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 475 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 525
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 526 QLIKKEKVYLAWVPAHKGIGGNEQVDK 552
>pdb|3KLH|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Post-Translocation
Aztmp-Terminated Dna (Complex P)
Length = 564
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 475 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 525
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 526 QLIKKEKVYLAWVPAHKGIGGNEQVDK 552
>pdb|3KLF|A Chain A, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|E Chain E, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|I Chain I, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|M Chain M, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
Length = 557
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 475 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 525
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 526 QLIKKEKVYLAWVPAHKGIGGNEQVDK 552
>pdb|3KLE|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|E Chain E, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|I Chain I, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|M Chain M, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLG|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLG|E Chain E, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLI|A Chain A, Crystal Structure Of Unliganded Azt-Resistant Hiv-1
Reverse Transcriptase
Length = 562
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 475 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 525
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 526 QLIKKEKVYLAWVPAHKGIGGNEQVDK 552
>pdb|3IRX|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With The Non-Nucleoside Rt Inhibitor
(E)-S-Methyl
5-(1-(3,7-Dimethyl-2-Oxo-2,
3-Dihydrobenzo[d]oxazol-5-Yl)-5-
(5-Methyl-1,3,4-Oxadiazol-2-Yl)pent-1-Enyl)-2-Methoxy-3-
Methylbenzothioate.
pdb|3IS9|A Chain A, Crystal Structure Of The Hiv-1 Reverse Transcriptase (Rt)
In Complex With The Alkenyldiarylmethane (Adam)
Non-Nucleoside Rt Inhibitor Dimethyl
3,3'-(6-Methoxy-6-Oxohex-1-Ene-1,1-
Diyl)bis(5-Cyano-6-Methoxybenzoate)
Length = 558
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 476 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 526
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 527 QLIKKEKVYLAWVPAHKGIGGNEQVDK 553
>pdb|3IG1|A Chain A, Hiv-1 Reverse Transcriptase With The Inhibitor Beta-
Thujaplicinol Bound At The Rnase H Active Site
Length = 555
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|3JSM|A Chain A, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds-Dna And Complexed With Tenofovir-Diphosphate As The
Incoming Nucleotide Substrate
pdb|3JYT|A Chain A, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds- Dna And Complexed With Datp As The Incoming
Nucleotide Substrate
Length = 558
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|3DLK|A Chain A, Crystal Structure Of An Engineered Form Of The Hiv-1
Reverse Transcriptase, Rt69a
Length = 556
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 474 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 524
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 525 QLIKKEKVYLAWVPAHKGIGGNEQVDK 551
>pdb|3BGR|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278 (Rilpivirine),
A Non-Nucleoside Rt Inhibitor
pdb|4I2Q|A Chain A, Crystal Structure Of K103n/y181c Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Rilpivirine (tmc278)
Analogue
Length = 557
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 475 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 525
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 526 QLIKKEKVYLAWVPAHKGIGGNEQVDK 552
>pdb|2ZE2|A Chain A, Crystal Structure Of L100iK103N MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278 (Rilpivirine),
A Non-Nucleoside Rt Inhibitor
Length = 557
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 475 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 525
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 526 QLIKKEKVYLAWVPAHKGIGGNEQVDK 552
>pdb|2ZD1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tmc278 (Rilpivirine), A Non-Nucleoside Rt
Inhibitor
pdb|4H4M|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With (E)-
3-(3-Chloro-5-(4-Chloro-2-(2-(2,4-Dioxo-3,4-
Dihydropyrimidin-1(2h)-
Yl)ethoxy)phenoxy)phenyl)acrylonitrile (Jlj494), A
Non-Nucleoside Inhibitor
pdb|4H4O|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With
(E)-3-(3-(2-(2-(2,4-Dioxo-3,
4-Dihydropyrimidin-1(2h)-Yl)ethoxy)- 4-
Fluorophenoxy)-5-Fluorophenyl)acrylonitrile (Jlj506), A
Non- Nucleoside Inhibitor
pdb|4I2P|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Rilpivirine (tmc278) Based Analogue
pdb|4G1Q|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (rt) In
Complex With Rilpivirine (tmc278, Edurant), A
Non-nucleoside Rt-inhibiting Drug
pdb|4I7G|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At Nnrti
Adjacent Site
pdb|4ICL|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Incoming Dntp Binding Site
pdb|4ID5|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Rnase H Primer Grip Site
pdb|4IDK|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The 428
Site
pdb|4IFV|A Chain A, Detecting Allosteric Sites Of Hiv-1 Reverse Transcriptase
By X-ray Crystallographic Fragment Screening
pdb|4IFY|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Knuckles Site
pdb|4IG0|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The 507
Site
pdb|4IG3|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment Near
Knuckles Site
Length = 557
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 475 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 525
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 526 QLIKKEKVYLAWVPAHKGIGGNEQVDK 552
>pdb|2VG5|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
pdb|2VG6|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
pdb|2VG7|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
Length = 557
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|2IAJ|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Atp
pdb|2IC3|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Nonnucleoside
Inhibitor Hby 097
Length = 560
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|2I5J|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Dhbnh, An Rnase H Inhibitor
Length = 552
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1DLO|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1BQM|A Chain A, Hiv-1 RtHBY 097
Length = 556
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1HVU|A Chain A, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|D Chain D, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|G Chain G, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|J Chain J, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
Length = 554
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|3HVT|A Chain A, Structural Basis Of Asymmetry In The Human
Immunodeficiency Virus Type 1 Reverse Transcriptase
Heterodimer
Length = 556
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1HPZ|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HQE|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HQU|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1SV5|A Chain A, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase (Rt) In Complex With Janssen-R165335
Length = 560
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1N5Y|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Post-
Translocation Aztmp-Terminated Dna (Complex P)
pdb|1N6Q|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Pre-
Translocation Aztmp-Terminated Dna (Complex N)
pdb|1T03|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Tenofovir
Terminated Template-Primer (Complex P)
pdb|1T05|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Template-Primer
With Tenofovir-Diphosphate Bound As The Incoming
Nucleotide Substrate
pdb|1R0A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase
Covalently Tethered To Dna Template-primer Solved To 2.8
Angstroms
Length = 558
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1RDB|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N +L+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMQLMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|1RNH|A Chain A, Structure Of Ribonuclease H Phased At 2 Angstroms
Resolution By Mad Analysis Of The Selenomethionyl
Protein
Length = 155
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRXELXAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ +P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAXNPTLE 147
>pdb|4DG1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Polymorphism Mutation K172a And K173a
Length = 549
Score = 33.5 bits (75), Expect = 0.033, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVD 88
+ + + V L W P+H GI GNE VD
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVD 549
>pdb|4B3O|A Chain A, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A Unique
Rt Conformation And Substrate Interface
Length = 560
Score = 33.5 bits (75), Expect = 0.035, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1RBS|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 24/115 (20%)
Query: 3 HCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPY 46
+N EL+A ++ L ++K A +L +DS G +A P
Sbjct: 41 RTTNNRMELMAAIVALEALKE--ACEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPV 98
Query: 47 LSCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 99 KNVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|1RDC|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 4 CSNGIAELIAILLCLRSIKNH--------------PAMRFLLVSDSMGSLSAIANPYLSC 49
+N EL+A ++ L ++K H +++ G +A P +
Sbjct: 42 TTNNRMELMAAIVALEALKEHCEVILSTNSQYVRQGITQWIHNWKKRGWKTADKKPVKNV 101
Query: 50 PIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 102 DLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|1KVC|A Chain A, E. Coli Ribonuclease Hi D134n Mutant
Length = 155
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE ++ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCNELARAAAMNPTLE 147
>pdb|1EET|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc204
Length = 557
Score = 32.7 bits (73), Expect = 0.055, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N +L AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTQLQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|2YKN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Difluoromethylbenzoxazole (Dfmb)
Pyrimidine Thioether Derivative, A Non-Nucleoside Rt
Inhibitor (Nnrti)
Length = 562
Score = 32.7 bits (73), Expect = 0.055, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N +L AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTQLQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|2YKM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Difluoromethylbenzoxazole (Dfmb)
Pyrimidine Thioether Derivative, A Non-Nucleoside Rt
Inhibitor (Nnrti)
Length = 562
Score = 32.7 bits (73), Expect = 0.055, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N +L AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTQLQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1BQN|A Chain A, Tyr 188 Leu Hiv-1 RtHBY 097
Length = 558
Score = 32.7 bits (73), Expect = 0.055, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GN+ VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNQQVDK 550
>pdb|1IKV|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
Efivarenz
pdb|1IKX|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
The Inhibitor Pnu142721
pdb|1IKY|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc194
Length = 560
Score = 32.7 bits (73), Expect = 0.055, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N +L AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTQLQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1IKW|A Chain A, Wild Type Hiv-1 Reverse Transcriptase In Complex With
Efavirenz
pdb|3ISN|C Chain C, Crystal Structure Of Hiv-1 Rt Bound To A 6-Vinylpyrimidine
Inhibitor
pdb|3ITH|A Chain A, Crystal Structure Of The Hiv-1 Reverse Transcriptase Bound
To A 6-Vinylpyrimidine Inhibitor
pdb|3ITH|C Chain C, Crystal Structure Of The Hiv-1 Reverse Transcriptase Bound
To A 6-Vinylpyrimidine Inhibitor
Length = 560
Score = 32.7 bits (73), Expect = 0.055, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N +L AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTQLQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1RTD|A Chain A, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
pdb|1RTD|C Chain C, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
Length = 554
Score = 32.3 bits (72), Expect = 0.062, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N +L AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 473 TNQKTQLQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDESESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|3V4I|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And Azttp
pdb|3V4I|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And Azttp
pdb|3V6D|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
Cross-Linked With Azt-Terminated Dna
pdb|3V6D|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
Cross-Linked With Azt-Terminated Dna
pdb|3V81|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And The Nonnucleoside Inhibitor Nevirapine
pdb|3V81|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And The Nonnucleoside Inhibitor Nevirapine
Length = 556
Score = 32.0 bits (71), Expect = 0.085, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V++S +L I A P S +++QI
Sbjct: 475 TNQKTELQAIYLALQD----SGLEVNIVTNSQYALGIIQAQPDKSESELVNQIIE----- 525
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 526 QLIKKEKVYLAWVPAHKGIGGNEQVDK 552
>pdb|1WSH|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSH|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSH|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSH|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSE|A Chain A, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48a) With Mn2+
pdb|1WSE|B Chain B, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48a) With Mn2+
Length = 155
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N L+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMALMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|1KVB|A Chain A, E. Coli Ribonuclease Hi D134h Mutant
Length = 155
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE + A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCHELARAAAMNPTLE 147
>pdb|1KVA|A Chain A, E. Coli Ribonuclease Hi D134a Mutant
Length = 155
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE + A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCAELARAAAMNPTLE 147
>pdb|4B3Q|A Chain A, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A Unique
Rt Conformation And Substrate Interface
Length = 560
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V++S +L I A P S +++QI
Sbjct: 473 TNQKTELQAIHLALQD----SGLEVNIVTNSQYALGIIQAQPDQSESELVNQIIE----- 523
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + V L W P+H GI GNE VD+
Sbjct: 524 QLIKKEKVYLAWVPAHKGIGGNEQVDK 550
>pdb|1WSF|A Chain A, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
pdb|1WSF|B Chain B, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
pdb|1WSF|C Chain C, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
pdb|1WSF|D Chain D, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
Length = 155
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE + A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCAELARAAAMNPTLE 147
>pdb|1RBR|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 24/115 (20%)
Query: 3 HCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPY 46
+N EL+A ++ L ++K +L +DS G +A P
Sbjct: 41 RTTNNRMELMAAIVALEALKE--PCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPV 98
Query: 47 LSCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE D+ A+ ++P +E
Sbjct: 99 KNVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147
>pdb|2OPR|A Chain A, Crystal Structure Of K101e Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 547
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 472 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 522
Query: 63 KTVGQYYVKLMWCPSHCGIRGNEAV 87
+ + + V L W P+H GI GNE V
Sbjct: 523 QLIKKEKVYLAWVPAHKGIGGNEQV 547
>pdb|4B3P|A Chain A, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A Unique
Rt Conformation And Substrate Interface
Length = 560
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 70 VKLMWCPSHCGIRGNEAVDQ 89
V L W P+H GI GNE VD+
Sbjct: 531 VYLAWVPAHKGIGGNEQVDK 550
>pdb|1WSI|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
pdb|1WSI|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
pdb|1WSI|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
pdb|1WSI|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
pdb|1WSG|A Chain A, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
pdb|1WSG|B Chain B, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
pdb|1WSG|C Chain C, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
pdb|1WSG|D Chain D, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
Length = 155
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N L+A ++ L ++K H +L +DS G +A P
Sbjct: 42 TTNNRMALMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE ++ A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCNELARAAAMNPTLE 147
>pdb|2YV0|X Chain X, Structural And Thermodynamic Analyses Of E. Coli
Ribonuclease Hi Variant With Quintuple Thermostabilizing
Mutations
Length = 155
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 24/114 (21%)
Query: 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSM----------------GSLSAIANPYL 47
+N EL+A ++ L ++K +L +DS G +A P
Sbjct: 42 TTNNRMELMAAIVALEALKE--PCEVILSTDSQYLRQGITQWIHNWKKRGWKTADGKPVK 99
Query: 48 SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
+ + ++ +A +GQ+ +K W H G NE + A+ ++P +E
Sbjct: 100 NVDLWQRLDAA------LGQHQIKWEWVKGHAGHPENERCHELARAAAMNPTLE 147
>pdb|2OPP|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw420867x
Length = 542
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAI-ANPYLS-CPIISQIYSAWCDL 62
+N EL AI L L+ + +V+DS +L I A P S +++QI
Sbjct: 470 TNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIE----- 520
Query: 63 KTVGQYYVKLMWCPSHCGIRGN 84
+ + + V L W P+H GI GN
Sbjct: 521 QLIKKEKVYLAWVPAHKGIGGN 542
>pdb|3P1G|A Chain A, Crystal Structure Of The Xenotropic Murine Leukemia
Virus-Related Virus (Xmrv) Rnase H Domain
Length = 165
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 72 LMWCPSH-----CGIRGNEAVDQAAKDPLLSPVIE 101
++ CP H RGN DQAA++ + V+E
Sbjct: 126 IIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLE 160
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 37 GSLSAIANPYLSCPIISQIYSA-WCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPL 95
G +AI P+ S ++Q A W D + V Y+ CG RGNE D + P
Sbjct: 227 GGTAAIPGPFASGKTVTQHQLAKWSDAQVV--IYIG-------CGERGNEMTDVLEEFPK 277
Query: 96 L------SPVIEKKI 104
L P++E+ +
Sbjct: 278 LKDPKTGKPLMERTV 292
>pdb|3V1Q|A Chain A, Crystal Structures Of The Reverse Transcriptase-Associated
Ribonuclease H Domain Of Xenotropic Murine
Leukemia-Virus Related Virus
Length = 167
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 72 LMWCPSH-----CGIRGNEAVDQAAKDPLLSPVIE 101
++ CP H RGN DQAA++ + V+E
Sbjct: 128 IIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLE 162
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 37 GSLSAIANPYLSCPIISQIYSA-WCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKDPL 95
G +AI P+ S ++Q A W D + V Y+ CG RGNE D + P
Sbjct: 227 GGTAAIPGPFGSAKTVTQHQLAKWSDAQVV--IYIG-------CGERGNEMTDVLEEFPK 277
Query: 96 L------SPVIEKKI 104
L P++E+ +
Sbjct: 278 LKDPKTGKPLMERTV 292
>pdb|3V1O|A Chain A, Crystal Structures Of The Reverse Transcriptase-Associated
Ribonuclease H Domain Of Xenotropic Murine
Leukemia-Virus Related Virus
pdb|3V1R|A Chain A, Crystal Structures Of The Reverse Transcriptase-Associated
Ribonuclease H Domain Of Xmrv With Inhibitor
Beta-Thujaplicinol
Length = 180
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 75 CPSH-----CGIRGNEAVDQAAKDPLLSPVIE 101
CP H RGN DQAA++ + V+E
Sbjct: 144 CPGHQKGNSAEARGNRMADQAAREAAMKAVLE 175
>pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Transcriptase
Length = 555
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 5 SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANPYLSCPIISQIYSAWCDLKT 64
+N AEL A + L + P + ++ S + + A I++QI +
Sbjct: 472 TNQQAELEAFAMALTD--SGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIE-----EM 524
Query: 65 VGQYYVKLMWCPSHCGIRGNEAVDQ 89
+ + + + W P+H GI GN+ VD
Sbjct: 525 IKKEAIYVAWVPAHKGIGGNQEVDH 549
>pdb|2JOB|A Chain A, Solution Structure Of An Antilipopolysaccharide Factor
From Shrimp And Its Possible Lipid A Binding Site
Length = 102
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 62 LKTVGQYYVKLMWCPSHCGIRGN 84
LK YY MWCP IRG
Sbjct: 42 LKRFQVYYKGRMWCPGWTAIRGE 64
>pdb|4HKQ|A Chain A, Protein Dna Complex
Length = 681
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 70 VKLMWCPSH-----CGIRGNEAVDQAAKDPLLSPVIE 101
+ ++ CP H RGN DQAA++ + V+E
Sbjct: 640 LSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLE 676
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 21 IKNHPAMRFLLVSDSMGSLSAIANPYLSCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCG 80
++ HPAM+ L+V + S++A+ ++ +I ++ C +G V+ P
Sbjct: 189 VRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV 248
Query: 81 IRGN 84
+R +
Sbjct: 249 VRSS 252
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 21 IKNHPAMRFLLVSDSMGSLSAIANPYLSCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCG 80
++ HPAM+ L+V + S++A+ ++ +I ++ C +G V+ P
Sbjct: 189 VRAHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV 248
Query: 81 IRGN 84
+R +
Sbjct: 249 VRSS 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,819,626
Number of Sequences: 62578
Number of extensions: 94354
Number of successful extensions: 319
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 112
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)