Query psy15899
Match_columns 104
No_of_seqs 166 out of 1020
Neff 7.8
Searched_HMMs 29240
Date Sat Aug 17 00:27:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 5.6E-26 1.9E-30 151.2 10.5 94 3-98 47-152 (154)
2 3qio_A GAG-POL polyprotein; RN 99.9 1.5E-25 5.2E-30 149.3 9.6 91 2-97 45-147 (150)
3 3h08_A RNH (ribonuclease H); R 99.9 1.2E-25 3.9E-30 148.4 7.5 91 3-97 41-144 (146)
4 1jl1_A Ribonuclease HI; RNAse 99.9 3.2E-25 1.1E-29 148.0 8.8 94 3-100 41-146 (155)
5 2e4l_A Ribonuclease HI, RNAse 99.9 6.9E-25 2.4E-29 146.8 9.0 91 3-97 43-145 (158)
6 3p1g_A Xenotropic murine leuke 99.9 3.7E-25 1.3E-29 149.6 6.0 96 2-101 59-160 (165)
7 2kq2_A Ribonuclease H-related 99.9 1.1E-25 3.9E-30 149.2 2.6 94 4-102 48-142 (147)
8 1ril_A Ribonuclease H; hydrola 99.9 1.2E-24 4E-29 146.9 7.0 93 3-99 45-150 (166)
9 2lsn_A Reverse transcriptase; 99.9 1.4E-22 4.7E-27 137.0 9.2 91 4-96 54-162 (165)
10 3hst_B Protein RV2228C/MT2287; 99.9 2.9E-21 9.8E-26 125.6 10.0 91 3-98 43-134 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.9 2.3E-21 8E-26 125.5 9.5 90 3-97 42-137 (140)
12 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 3.1E-21 1.1E-25 149.8 9.8 85 2-95 469-555 (555)
13 2ehg_A Ribonuclease HI; RNAse 99.8 7.4E-21 2.5E-25 125.4 8.5 90 3-98 45-135 (149)
14 2zd1_A Reverse transcriptase/r 99.8 4.7E-21 1.6E-25 148.9 7.2 84 2-94 472-557 (557)
15 1zbf_A Ribonuclease H-related 99.4 9.7E-14 3.3E-18 91.5 0.8 84 3-89 48-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.1 1.1E-10 3.9E-15 76.2 5.6 42 3-45 42-83 (134)
17 1rw3_A POL polyprotein; RNA an 83.2 0.39 1.3E-05 36.0 1.2 41 4-45 387-428 (455)
18 1ea9_C Cyclomaltodextrinase; h 81.1 1.1 3.9E-05 34.6 3.2 73 10-84 170-249 (583)
19 1wzl_A Alpha-amylase II; pullu 76.6 1.1 3.8E-05 34.6 1.9 69 10-84 171-250 (585)
20 1j0h_A Neopullulanase; beta-al 75.8 2.1 7.2E-05 33.1 3.3 74 10-89 174-258 (588)
21 1ht6_A AMY1, alpha-amylase iso 73.8 2.2 7.5E-05 31.3 2.8 69 11-83 20-98 (405)
22 4aef_A Neopullulanase (alpha-a 71.1 2.4 8.4E-05 33.0 2.6 68 10-84 237-316 (645)
23 1gcy_A Glucan 1,4-alpha-maltot 70.0 14 0.00046 28.1 6.5 69 11-83 35-122 (527)
24 1lwj_A 4-alpha-glucanotransfer 69.3 3.2 0.00011 30.7 2.8 69 10-84 21-100 (441)
25 2guy_A Alpha-amylase A; (beta- 67.7 3.2 0.00011 31.0 2.5 73 10-83 41-127 (478)
26 1zja_A Trehalulose synthase; s 67.3 3.3 0.00011 31.7 2.6 68 10-82 30-108 (557)
27 4aie_A Glucan 1,6-alpha-glucos 66.4 2.8 9.4E-05 31.5 2.0 70 10-84 30-110 (549)
28 1m53_A Isomaltulose synthase; 65.9 2.8 9.7E-05 32.2 2.0 68 10-82 43-121 (570)
29 2wc7_A Alpha amylase, catalyti 63.5 3.4 0.00011 31.0 2.0 69 9-83 53-132 (488)
30 1hvx_A Alpha-amylase; hydrolas 62.4 6.3 0.00021 29.8 3.3 70 11-81 23-109 (515)
31 2ze0_A Alpha-glucosidase; TIM 59.4 4.6 0.00016 30.9 2.1 69 9-82 28-107 (555)
32 2bhu_A Maltooligosyltrehalose 58.8 11 0.00038 29.2 4.2 70 11-85 143-224 (602)
33 1g5a_A Amylosucrase; glycosylt 56.6 3.4 0.00012 32.4 0.9 74 8-82 109-191 (628)
34 3czg_A Sucrose hydrolase; (alp 56.3 4.9 0.00017 31.5 1.8 71 8-82 102-184 (644)
35 1uok_A Oligo-1,6-glucosidase; 56.0 4.4 0.00015 31.0 1.5 68 10-82 29-107 (558)
36 2zic_A Dextran glucosidase; TI 55.9 5.1 0.00017 30.6 1.8 69 10-83 29-108 (543)
37 1ji1_A Alpha-amylase I; beta/a 54.7 6.1 0.00021 30.8 2.1 68 9-82 188-271 (637)
38 3aj7_A Oligo-1,6-glucosidase; 54.6 7.2 0.00025 30.2 2.5 69 10-83 38-117 (589)
39 2z1k_A (NEO)pullulanase; hydro 53.6 4.9 0.00017 29.9 1.4 70 9-84 47-127 (475)
40 1ua7_A Alpha-amylase; beta-alp 50.7 15 0.0005 26.9 3.5 72 11-83 16-104 (422)
41 3m07_A Putative alpha amylase; 50.3 17 0.0006 28.3 4.1 72 11-85 153-234 (618)
42 3aml_A OS06G0726400 protein; s 48.9 12 0.0004 30.2 2.9 67 11-82 200-279 (755)
43 4aio_A Limit dextrinase; hydro 48.8 18 0.00061 28.8 4.0 31 52-83 378-408 (884)
44 3vgf_A Malto-oligosyltrehalose 48.6 19 0.00067 27.5 4.1 69 11-84 118-198 (558)
45 4h8e_A Undecaprenyl pyrophosph 47.7 62 0.0021 22.7 6.2 30 7-36 50-79 (256)
46 2e8y_A AMYX protein, pullulana 47.4 25 0.00087 27.8 4.6 32 52-84 315-346 (718)
47 4aee_A Alpha amylase, catalyti 46.0 6.9 0.00024 30.9 1.2 75 9-89 262-347 (696)
48 1mxg_A Alpha amylase; hyperthe 45.1 22 0.00075 26.2 3.8 71 11-82 27-115 (435)
49 1m7x_A 1,4-alpha-glucan branch 43.9 27 0.00093 27.1 4.3 67 11-82 154-233 (617)
50 2i0f_A 6,7-dimethyl-8-ribityll 43.8 35 0.0012 22.2 4.2 33 58-93 34-66 (157)
51 3k1d_A 1,4-alpha-glucan-branch 42.9 29 0.00099 27.8 4.3 70 11-83 262-342 (722)
52 1wpc_A Glucan 1,4-alpha-maltoh 42.3 18 0.00063 26.8 3.0 70 11-81 24-110 (485)
53 2wan_A Pullulanase; hydrolase, 41.2 30 0.001 28.4 4.3 32 52-84 531-562 (921)
54 4gqr_A Pancreatic alpha-amylas 40.9 16 0.00056 26.5 2.5 30 51-81 75-104 (496)
55 3dhu_A Alpha-amylase; structur 40.5 13 0.00044 27.4 1.9 71 11-82 29-112 (449)
56 1ud2_A Amylase, alpha-amylase; 40.4 21 0.0007 26.5 3.0 70 11-81 22-108 (480)
57 3bh4_A Alpha-amylase; calcium, 39.3 22 0.00075 26.4 3.0 70 11-81 20-106 (483)
58 3aie_A Glucosyltransferase-SI; 39.0 21 0.00072 29.2 3.0 68 12-80 633-719 (844)
59 3edf_A FSPCMD, cyclomaltodextr 38.0 19 0.00065 27.8 2.6 71 11-82 147-227 (601)
60 2aaa_A Alpha-amylase; glycosid 36.1 33 0.0011 25.4 3.5 74 9-83 40-127 (484)
61 1gjw_A Maltodextrin glycosyltr 35.0 26 0.00089 27.2 2.9 73 9-83 117-211 (637)
62 3kzq_A Putative uncharacterize 33.7 82 0.0028 20.2 4.9 19 60-78 24-42 (208)
63 4b4t_W RPN10, 26S proteasome r 33.6 1.1E+02 0.0039 21.3 5.8 25 12-36 89-117 (268)
64 1wza_A Alpha-amylase A; hydrol 33.4 38 0.0013 25.1 3.5 69 9-83 24-111 (488)
65 2wsk_A Glycogen debranching en 33.3 48 0.0016 25.9 4.2 30 52-82 241-270 (657)
66 1kn6_A Prohormone convertase 1 32.8 15 0.00052 21.6 1.0 13 82-94 21-33 (90)
67 2vr5_A Glycogen operon protein 32.6 45 0.0015 26.5 3.9 29 52-81 266-294 (718)
68 3u5c_O RP59A, 40S ribosomal pr 32.0 93 0.0032 19.7 4.7 32 2-34 53-84 (137)
69 2c92_A 6,7-dimethyl-8-ribityll 31.9 63 0.0022 21.0 4.0 32 58-92 39-71 (160)
70 2dh2_A 4F2 cell-surface antige 30.7 49 0.0017 24.3 3.7 70 10-80 34-108 (424)
71 3j20_M 30S ribosomal protein S 30.2 83 0.0028 19.9 4.2 32 2-34 53-84 (137)
72 2ya0_A Putative alkaline amylo 29.4 54 0.0019 25.9 3.9 29 52-81 254-282 (714)
73 3k8k_A Alpha-amylase, SUSG; al 29.3 28 0.00094 27.5 2.2 71 10-82 58-135 (669)
74 1iv8_A Maltooligosyl trehalose 28.7 33 0.0011 27.6 2.5 72 11-87 16-100 (720)
75 1cyg_A Cyclodextrin glucanotra 28.2 21 0.00071 28.0 1.3 72 9-81 49-139 (680)
76 1bf2_A Isoamylase; hydrolase, 28.0 64 0.0022 25.7 4.1 29 52-81 272-300 (750)
77 1wkq_A Guanine deaminase; doma 27.3 69 0.0024 20.6 3.6 28 7-34 60-87 (164)
78 2b3j_A TRNA adenosine deaminas 27.1 73 0.0025 20.2 3.6 29 6-34 54-82 (159)
79 1g94_A Alpha-amylase; beta-alp 26.6 53 0.0018 24.1 3.2 71 11-83 13-94 (448)
80 2nx8_A TRNA-specific adenosine 26.6 73 0.0025 20.8 3.6 29 6-34 63-91 (179)
81 2fr5_A Cytidine deaminase; tet 26.6 53 0.0018 20.9 2.8 29 7-36 64-92 (146)
82 3bc9_A AMYB, alpha amylase, ca 26.5 47 0.0016 25.7 3.0 70 11-81 149-236 (599)
83 2ya1_A Putative alkaline amylo 26.4 65 0.0022 26.8 3.9 29 52-81 561-589 (1014)
84 3nq4_A 6,7-dimethyl-8-ribityll 26.0 1E+02 0.0036 19.8 4.2 33 58-93 34-70 (156)
85 1uwz_A Cytidine deaminase; CDD 25.3 68 0.0023 20.0 3.2 30 6-36 51-80 (136)
86 1jae_A Alpha-amylase; glycosid 25.1 73 0.0025 23.6 3.8 68 11-83 21-104 (471)
87 1c2y_A Protein (lumazine synth 25.1 1E+02 0.0034 19.9 4.0 33 58-93 35-69 (156)
88 1hqk_A 6,7-dimethyl-8-ribityll 23.9 1.2E+02 0.0041 19.4 4.2 33 58-93 34-69 (154)
89 1rvv_A Riboflavin synthase; tr 23.7 1.2E+02 0.0042 19.4 4.2 32 59-93 35-69 (154)
90 2zd1_B P51 RT; P51/P66, hetero 23.3 63 0.0022 23.8 3.1 40 6-45 362-406 (428)
91 2a8n_A Cytidine and deoxycytid 23.3 78 0.0027 19.6 3.2 28 7-34 52-79 (144)
92 1wwr_A TRNA adenosine deaminas 23.3 92 0.0032 20.2 3.6 28 7-34 71-98 (171)
93 1puj_A YLQF, conserved hypothe 23.2 18 0.00063 25.1 0.2 15 72-86 3-17 (282)
94 2z3g_A Blasticidin-S deaminase 22.5 71 0.0024 19.7 2.8 29 6-35 52-80 (130)
95 1qho_A Alpha-amylase; glycosid 22.4 50 0.0017 25.8 2.5 73 9-82 49-136 (686)
96 2f6m_B Vacuolar protein sortin 22.0 63 0.0021 19.7 2.4 17 7-23 30-46 (109)
97 3hz8_A Thiol:disulfide interch 21.5 1.6E+02 0.0056 18.6 4.6 29 49-77 36-64 (193)
98 2p22_B Vacuolar protein sortin 21.2 66 0.0023 19.9 2.4 17 7-23 39-55 (118)
99 1d3c_A Cyclodextrin glycosyltr 21.0 56 0.0019 25.6 2.5 72 9-81 52-143 (686)
100 1ejb_A Lumazine synthase; anal 21.0 1.4E+02 0.0046 19.5 4.0 31 59-92 39-72 (168)
101 1z3a_A TRNA-specific adenosine 20.8 92 0.0031 20.0 3.2 27 7-33 57-83 (168)
102 2rem_A Disulfide oxidoreductas 20.0 1.7E+02 0.0057 18.1 5.1 38 28-77 28-65 (193)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.93 E-value=5.6e-26 Score=151.24 Aligned_cols=94 Identities=24% Similarity=0.311 Sum_probs=78.8
Q ss_pred cchhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCC--------C-CCCh---HHHHHHHHHHHHHHhCCcce
Q psy15899 3 HCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANP--------Y-LSCP---IISQIYSAWCDLKTVGQYYV 70 (104)
Q Consensus 3 ~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~~--------~-~~~~---~~~~i~~~~~~l~~~~~~~v 70 (104)
.+|+++|||.|++.||+.+.+.+.++|.|+|||++++++|++| + ...+ ...++++.+.++.. +..|
T Consensus 47 ~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~--~~~v 124 (154)
T 2qkb_A 47 RQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ--GMDI 124 (154)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT--TCEE
T ss_pred CCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc--CCce
Confidence 5799999999999999999988889999999999999999874 1 1221 23556666656665 5679
Q ss_pred EEEeecCCCCCchhHHHHHHHccccCCC
Q psy15899 71 KLMWCPSHCGIRGNEAVDQAAKDPLLSP 98 (104)
Q Consensus 71 ~~~WVpgH~g~~gNe~AD~lAk~a~~~~ 98 (104)
.|.|||||+|++||+.||+||++|+..+
T Consensus 125 ~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 125 QWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp EEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred EEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998765
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.93 E-value=1.5e-25 Score=149.30 Aligned_cols=91 Identities=26% Similarity=0.316 Sum_probs=73.1
Q ss_pred CcchhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCC---C------CCh--H-HHHHHHHHHHHHHhCCcc
Q psy15899 2 FHCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANPY---L------SCP--I-ISQIYSAWCDLKTVGQYY 69 (104)
Q Consensus 2 ~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~~~---~------~~~--~-~~~i~~~~~~l~~~~~~~ 69 (104)
..+||++|||.|++.||+.+ .++|.|+|||++++++|++|. . ..+ + ..++++.+.+++.+ +..
T Consensus 45 ~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~-~~~ 119 (150)
T 3qio_A 45 TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIK-KEK 119 (150)
T ss_dssp SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTT-CSE
T ss_pred CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhh-cCc
Confidence 35799999999999999986 489999999999999998751 1 111 1 24555554454455 889
Q ss_pred eEEEeecCCCCCchhHHHHHHHccccCC
Q psy15899 70 VKLMWCPSHCGIRGNEAVDQAAKDPLLS 97 (104)
Q Consensus 70 v~~~WVpgH~g~~gNe~AD~lAk~a~~~ 97 (104)
|.|.|||||+|++|||+||+||++|+..
T Consensus 120 v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 120 VYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred eEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.92 E-value=1.2e-25 Score=148.37 Aligned_cols=91 Identities=22% Similarity=0.220 Sum_probs=72.8
Q ss_pred cchhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcC-C--------C-CCC--h-HHHHHHHHHHHHHHhCCcc
Q psy15899 3 HCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIAN-P--------Y-LSC--P-IISQIYSAWCDLKTVGQYY 69 (104)
Q Consensus 3 ~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~-~--------~-~~~--~-~~~~i~~~~~~l~~~~~~~ 69 (104)
.+|+++|||.|++.||+.+.+ .++|.|+|||++++++|++ | + ... + ..+++++.+.++..+ ..
T Consensus 41 ~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~--~~ 116 (146)
T 3h08_A 41 ATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL--HR 116 (146)
T ss_dssp EECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH--SE
T ss_pred CCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh--Cc
Confidence 468999999999999999976 6899999999999999987 2 1 111 1 235566666566664 47
Q ss_pred eEEEeecCCCCCchhHHHHHHHccccCC
Q psy15899 70 VKLMWCPSHCGIRGNEAVDQAAKDPLLS 97 (104)
Q Consensus 70 v~~~WVpgH~g~~gNe~AD~lAk~a~~~ 97 (104)
|.|.|||||+|+++|+.||+|||+|+..
T Consensus 117 v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 117 VTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp EEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999864
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.92 E-value=3.2e-25 Score=148.01 Aligned_cols=94 Identities=22% Similarity=0.356 Sum_probs=77.2
Q ss_pred cchhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCC--------C-CCC--hH-HHHHHHHHHHHHHhCCcce
Q psy15899 3 HCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANP--------Y-LSC--PI-ISQIYSAWCDLKTVGQYYV 70 (104)
Q Consensus 3 ~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~~--------~-~~~--~~-~~~i~~~~~~l~~~~~~~v 70 (104)
.+|+++|||.|++.||+.+.+ ..+|.|+|||++++++|++| + ..+ ++ ..++++.+.++.+ ...|
T Consensus 41 ~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~--~~~v 116 (155)
T 1jl1_A 41 RTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--QHQI 116 (155)
T ss_dssp EECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT--TCEE
T ss_pred CCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc--cCce
Confidence 478999999999999999976 38999999999999999973 2 111 21 2456666656665 5689
Q ss_pred EEEeecCCCCCchhHHHHHHHccccCCCcc
Q psy15899 71 KLMWCPSHCGIRGNEAVDQAAKDPLLSPVI 100 (104)
Q Consensus 71 ~~~WVpgH~g~~gNe~AD~lAk~a~~~~~~ 100 (104)
.|.|||||+|++||+.||+||++|+..+.+
T Consensus 117 ~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 117 KWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp EEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 999999999999999999999999987654
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.92 E-value=6.9e-25 Score=146.85 Aligned_cols=91 Identities=23% Similarity=0.320 Sum_probs=74.9
Q ss_pred cchhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcC--------CCC-CC--h-HHHHHHHHHHHHHHhCCcce
Q psy15899 3 HCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIAN--------PYL-SC--P-IISQIYSAWCDLKTVGQYYV 70 (104)
Q Consensus 3 ~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~--------~~~-~~--~-~~~~i~~~~~~l~~~~~~~v 70 (104)
.+|+++|||.|++.||+.+.+ .++|.|+|||++++++|++ .+. .. + ...++++.+.++.. ...|
T Consensus 43 ~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~--~~~v 118 (158)
T 2e4l_A 43 LTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ--LHQI 118 (158)
T ss_dssp EECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT--TSEE
T ss_pred CCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHc--cCcE
Confidence 478999999999999999865 3899999999999999998 222 11 1 12456666656665 5689
Q ss_pred EEEeecCCCCCchhHHHHHHHccccCC
Q psy15899 71 KLMWCPSHCGIRGNEAVDQAAKDPLLS 97 (104)
Q Consensus 71 ~~~WVpgH~g~~gNe~AD~lAk~a~~~ 97 (104)
.|.|||||+|++||+.||+||++|+..
T Consensus 119 ~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 119 DWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp EEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred EEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999976
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.91 E-value=3.7e-25 Score=149.61 Aligned_cols=96 Identities=24% Similarity=0.258 Sum_probs=73.0
Q ss_pred CcchhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCCCCChH-HHHHHHHHHHHHHhCCcceEEEeecCCCC
Q psy15899 2 FHCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANPYLSCPI-ISQIYSAWCDLKTVGQYYVKLMWCPSHCG 80 (104)
Q Consensus 2 ~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~~~~~~~~-~~~i~~~~~~l~~~~~~~v~~~WVpgH~g 80 (104)
..+||++||+.|++.||+++ ..++|.|||||+|+++++-......++ ..+++..+...+.+ +..|.|.|||||+|
T Consensus 59 ~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~~-~~~v~~~wVkgH~g 134 (165)
T 3p1g_A 59 AGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVHSEGREIKNKNEILALLKALFL-PKRLSIIHCPGHQK 134 (165)
T ss_dssp TTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHHHHTTS-BSEEEEEECCSSCC
T ss_pred CCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHHHHHhc-CCceEEEEecCCCC
Confidence 35799999999999999998 368999999999999998211111221 23444333232334 78999999999999
Q ss_pred -----CchhHHHHHHHccccCCCccc
Q psy15899 81 -----IRGNEAVDQAAKDPLLSPVIE 101 (104)
Q Consensus 81 -----~~gNe~AD~lAk~a~~~~~~~ 101 (104)
++|||+||+|||+|+..+.++
T Consensus 135 ~~~~~~~gNe~AD~LA~~aa~~~~~~ 160 (165)
T 3p1g_A 135 GNSAEARGNRMADQAAREAAMKAVLE 160 (165)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCcchHHHHHHHHHHHHHhcCCCc
Confidence 999999999999998765443
No 7
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.91 E-value=1.1e-25 Score=149.22 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=77.6
Q ss_pred chhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCCCC-ChHHHHHHHHHHHHHHhCCcceEEEeecCCCCCc
Q psy15899 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANPYLS-CPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIR 82 (104)
Q Consensus 4 ~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~~~~~-~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~~ 82 (104)
+||++|||.|++.||+++.+.+. +|.|+|||+.+.+.+.+.+.. .+....+.+.+.++. . .|.|.|||||+|++
T Consensus 48 ~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~---~-~v~~~wV~gH~g~~ 122 (147)
T 2kq2_A 48 MRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYR---G-IYSFEKVKAHSGNE 122 (147)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGS---T-TCCBCCCCCCCCCH
T ss_pred ccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhc---C-CeeEEEecCcCCCc
Confidence 58999999999999999887777 999999999998888765544 344455555544442 2 79999999999999
Q ss_pred hhHHHHHHHccccCCCcccc
Q psy15899 83 GNEAVDQAAKDPLLSPVIEK 102 (104)
Q Consensus 83 gNe~AD~lAk~a~~~~~~~~ 102 (104)
|||+||+|||+|+..+..|-
T Consensus 123 ~Ne~AD~LA~~a~~~~~~~~ 142 (147)
T 2kq2_A 123 FNDYVDMKAKSALGIRDLEH 142 (147)
T ss_dssp HHHHHHHHHHHHHTCCCTTC
T ss_pred chHHHHHHHHHHHhcccccc
Confidence 99999999999999887764
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.91 E-value=1.2e-24 Score=146.89 Aligned_cols=93 Identities=22% Similarity=0.171 Sum_probs=75.9
Q ss_pred cchhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcC----------CCCCCh--H-HHHHHHHHHHHHHhCCcc
Q psy15899 3 HCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIAN----------PYLSCP--I-ISQIYSAWCDLKTVGQYY 69 (104)
Q Consensus 3 ~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~----------~~~~~~--~-~~~i~~~~~~l~~~~~~~ 69 (104)
.+|+++|||.|++.||+.+.+. .+|.|+|||++++++|++ |...++ + ..++++.+.++.. ...
T Consensus 45 ~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~--~~~ 120 (166)
T 1ril_A 45 CTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA--PHR 120 (166)
T ss_dssp EECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT--TSE
T ss_pred CCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHh--cCe
Confidence 4689999999999999998763 599999999999999998 222222 1 2456666666665 458
Q ss_pred eEEEeecCCCCCchhHHHHHHHccccCCCc
Q psy15899 70 VKLMWCPSHCGIRGNEAVDQAAKDPLLSPV 99 (104)
Q Consensus 70 v~~~WVpgH~g~~gNe~AD~lAk~a~~~~~ 99 (104)
|.|.|||||+|+++|+.||+||++|+....
T Consensus 121 v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 121 VRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp EECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred EEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999987654
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.88 E-value=1.4e-22 Score=137.03 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=70.1
Q ss_pred chhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCC---------CCC--ChH-HHHHHHHHHHHHHhCCcceE
Q psy15899 4 CSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANP---------YLS--CPI-ISQIYSAWCDLKTVGQYYVK 71 (104)
Q Consensus 4 ~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~~---------~~~--~~~-~~~i~~~~~~l~~~~~~~v~ 71 (104)
.+++.||+.|+..||+.+++. ..+|.|+|||+|++++|+.| ... .|+ ..++++.+.+++.. ...|.
T Consensus 54 ~te~~Aei~Al~~al~~al~~-~~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~-~~~v~ 131 (165)
T 2lsn_A 54 HTAQMAEIAAVEFACKKALKI-PGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSM-KPDIT 131 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHS-SSCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHH-CTTCE
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhC-CCCEE
Confidence 456777888888777777654 46899999999999999863 111 122 35666666676666 77899
Q ss_pred EEeecCCCCC------chhHHHHHHHccccC
Q psy15899 72 LMWCPSHCGI------RGNEAVDQAAKDPLL 96 (104)
Q Consensus 72 ~~WVpgH~g~------~gNe~AD~lAk~a~~ 96 (104)
|.|||||+|. +|||+||+||++|+.
T Consensus 132 ~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 132 IQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp EEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 9999999994 689999999999974
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.86 E-value=2.9e-21 Score=125.62 Aligned_cols=91 Identities=18% Similarity=0.248 Sum_probs=78.3
Q ss_pred cchhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCC-CCChHHHHHHHHHHHHHHhCCcceEEEeecCCCCC
Q psy15899 3 HCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANPY-LSCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGI 81 (104)
Q Consensus 3 ~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~~~-~~~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~ 81 (104)
.+|+++||+.|++.||+++.+.+.++|.|+|||+++++.+++.+ .+++.+..+++.+.++..+ +..|.|.||| .
T Consensus 43 ~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~-~~~v~~~~V~----~ 117 (141)
T 3hst_B 43 RATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQ-FRRINYEWVP----R 117 (141)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTT-SSEEEEEECC----G
T ss_pred CCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEcC----C
Confidence 47999999999999999999888999999999999999999854 4555556666666677776 7899999999 4
Q ss_pred chhHHHHHHHccccCCC
Q psy15899 82 RGNEAVDQAAKDPLLSP 98 (104)
Q Consensus 82 ~gNe~AD~lAk~a~~~~ 98 (104)
++|+.||+||++|+...
T Consensus 118 ~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 118 ARNTYADRLANDAMDAA 134 (141)
T ss_dssp GGCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999997643
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.86 E-value=2.3e-21 Score=125.48 Aligned_cols=90 Identities=13% Similarity=0.176 Sum_probs=75.8
Q ss_pred cchhhHHHHHHHHHHHHHhhhCCCC----eEEEEeccHHHHHHhcCCCC-CChHHHHHHHHHHHH-HHhCCcceEEEeec
Q psy15899 3 HCSNGIAELIAILLCLRSIKNHPAM----RFLLVSDSMGSLSAIANPYL-SCPIISQIYSAWCDL-KTVGQYYVKLMWCP 76 (104)
Q Consensus 3 ~~s~~~aEl~Ai~~aL~~~~~~~~~----~v~I~tDS~~~l~~l~~~~~-~~~~~~~i~~~~~~l-~~~~~~~v~~~WVp 76 (104)
.+|+++||+.|++.||+.+.+.+.+ +|.|+|||+++++.+++++. +++.+..+++.+.++ .++ +..|.|.|||
T Consensus 42 ~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~-~~~v~~~~V~ 120 (140)
T 3u3g_D 42 ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMER-VPNLVFVHIP 120 (140)
T ss_dssp EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcC-CCcEEEEEcC
Confidence 4799999999999999999987777 99999999999999998764 455445555556576 666 6799999999
Q ss_pred CCCCCchhHHHHHHHccccCC
Q psy15899 77 SHCGIRGNEAVDQAAKDPLLS 97 (104)
Q Consensus 77 gH~g~~gNe~AD~lAk~a~~~ 97 (104)
.++|+.||+|||+|+..
T Consensus 121 ----~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 121 ----REKNARADELVNEAIDK 137 (140)
T ss_dssp ----GGGGHHHHHHHHHHHHH
T ss_pred ----chhhHHHHHHHHHHHHh
Confidence 59999999999998753
No 12
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.85 E-value=3.1e-21 Score=149.81 Aligned_cols=85 Identities=25% Similarity=0.360 Sum_probs=71.3
Q ss_pred CcchhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCCCC--ChHHHHHHHHHHHHHHhCCcceEEEeecCCC
Q psy15899 2 FHCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANPYLS--CPIISQIYSAWCDLKTVGQYYVKLMWCPSHC 79 (104)
Q Consensus 2 ~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~~~~~--~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH~ 79 (104)
..+||++||+.|++.||+. +.+++.|+|||+++++++++|... .++.+++. ++..+ +..|.|.|||||+
T Consensus 469 ~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~----~~~~~-~~~v~~~wV~~H~ 539 (555)
T 1mu2_A 469 EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQPTESESKIVNQII----EEMIK-KEAIYVAWVPAHK 539 (555)
T ss_dssp SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTCCSEESCHHHHHHH----HHHHH-CSEEEEEECCSSS
T ss_pred CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcccccccHHHHHHHH----HHhcc-CCcEEEEEEECCC
Confidence 3579999999999999998 578999999999999999997643 23444444 44344 7889999999999
Q ss_pred CCchhHHHHHHHcccc
Q psy15899 80 GIRGNEAVDQAAKDPL 95 (104)
Q Consensus 80 g~~gNe~AD~lAk~a~ 95 (104)
|++|||.||+||++|+
T Consensus 540 g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 540 GIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CCTTHHHHHHHHHTTC
T ss_pred CChhHHHHHHHHHhhC
Confidence 9999999999999985
No 13
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.84 E-value=7.4e-21 Score=125.40 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=77.1
Q ss_pred cchhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCCC-CChHHHHHHHHHHHHHHhCCcceEEEeecCCCCC
Q psy15899 3 HCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANPYL-SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGI 81 (104)
Q Consensus 3 ~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~~~~-~~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~ 81 (104)
.+||++||+.|++.||+.+.+.+.++|.|+|||+++++.+++++. +++....+++.+.++.++ . .|.|.||||
T Consensus 45 ~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~-~-~v~~~~V~~---- 118 (149)
T 2ehg_A 45 NSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKK-L-NATLIWVPR---- 118 (149)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHH-H-TCEEEECCG----
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhc-C-CEEEEEcCC----
Confidence 689999999999999999998888999999999999999998764 344556666666677776 4 699999997
Q ss_pred chhHHHHHHHccccCCC
Q psy15899 82 RGNEAVDQAAKDPLLSP 98 (104)
Q Consensus 82 ~gNe~AD~lAk~a~~~~ 98 (104)
++|+.||+||++|+..+
T Consensus 119 ~~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 119 EENKEADRLSRVAYELV 135 (149)
T ss_dssp GGCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhh
Confidence 69999999999998543
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.83 E-value=4.7e-21 Score=148.87 Aligned_cols=84 Identities=31% Similarity=0.389 Sum_probs=68.3
Q ss_pred CcchhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCCCCC--hHHHHHHHHHHHHHHhCCcceEEEeecCCC
Q psy15899 2 FHCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANPYLSC--PIISQIYSAWCDLKTVGQYYVKLMWCPSHC 79 (104)
Q Consensus 2 ~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~~~~~~--~~~~~i~~~~~~l~~~~~~~v~~~WVpgH~ 79 (104)
..+||++||+.|++.||+.+ .+++.|+|||+++++++++|...+ ++..++.+ ...+ ...|.|.|||||+
T Consensus 472 ~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~----~l~~-~~~v~~~wV~~H~ 542 (557)
T 2zd1_A 472 TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE----QLIK-KEKVYLAWVPAHK 542 (557)
T ss_dssp CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTCCSEESSHHHHHHHH----HHHH-CSEEEEEECCSSS
T ss_pred CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcCCccCCHHHHHHHHH----HHhc-CCCEEEEEcCCCC
Confidence 35899999999999999998 689999999999999999987652 34444443 2334 6689999999999
Q ss_pred CCchhHHHHHHHccc
Q psy15899 80 GIRGNEAVDQAAKDP 94 (104)
Q Consensus 80 g~~gNe~AD~lAk~a 94 (104)
|++|||.||+||++|
T Consensus 543 g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 543 GIGGNEQVDKLVSAG 557 (557)
T ss_dssp CCTTCCGGGGCC---
T ss_pred CChhHHHHHHHHhcC
Confidence 999999999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.35 E-value=9.7e-14 Score=91.55 Aligned_cols=84 Identities=15% Similarity=0.098 Sum_probs=63.6
Q ss_pred cchhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCCCC-C---h-HHHHHHHHHHHH---HHhCCcceEEEe
Q psy15899 3 HCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANPYLS-C---P-IISQIYSAWCDL---KTVGQYYVKLMW 74 (104)
Q Consensus 3 ~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~~~~~-~---~-~~~~i~~~~~~l---~~~~~~~v~~~W 74 (104)
.+||++||++|++.||+.+.+.+. +|.|+|||+++++.+.+.+.+ . + ...++++++.++ +. ...+....
T Consensus 48 ~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~--~~~~~~~~ 124 (142)
T 1zbf_A 48 IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLN--THTYETPI 124 (142)
T ss_dssp EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHH--HCCCCCCE
T ss_pred CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHh--hCCCceeE
Confidence 479999999999999999998776 999999999999999976522 1 1 234455444333 33 44567777
Q ss_pred ecCCCCCchhHHHHH
Q psy15899 75 CPSHCGIRGNEAVDQ 89 (104)
Q Consensus 75 VpgH~g~~gNe~AD~ 89 (104)
|+-|++..||..||.
T Consensus 125 ~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 125 LKWQTDKWGEIKADY 139 (142)
T ss_dssp EECCHHHHCSCTTCC
T ss_pred EEeccCccCcCcccc
Confidence 888888899988883
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.10 E-value=1.1e-10 Score=76.17 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=37.5
Q ss_pred cchhhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCC
Q psy15899 3 HCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANP 45 (104)
Q Consensus 3 ~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~~ 45 (104)
.+||++||++|++.||+.+.+.+.. +.|+|||+++++.+.++
T Consensus 42 ~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~~~ 83 (134)
T 4htu_A 42 IGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVKDK 83 (134)
T ss_dssp EECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHHcC
Confidence 5799999999999999999886544 89999999999999864
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=83.18 E-value=0.39 Score=35.99 Aligned_cols=41 Identities=7% Similarity=0.082 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHHHHHhhhC-CCCeEEEEeccHHHHHHhcCC
Q psy15899 4 CSNGIAELIAILLCLRSIKNH-PAMRFLLVSDSMGSLSAIANP 45 (104)
Q Consensus 4 ~s~~~aEl~Ai~~aL~~~~~~-~~~~v~I~tDS~~~l~~l~~~ 45 (104)
.+++.-|++|+..|++..... ...+++|+||+. ++..+.+.
T Consensus 387 ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 387 WPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQP 428 (455)
T ss_dssp SCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-TTTTSSST
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-HHHHhCCC
Confidence 356789999999999988643 457999999997 66655543
No 18
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=81.05 E-value=1.1 Score=34.56 Aligned_cols=73 Identities=8% Similarity=-0.091 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHH--hcCCCCCC---hHHHHHHHHHHHHHHhCCcceEEEeecCCCCCc
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLV--SDSMGSLSA--IANPYLSC---PIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIR 82 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~--tDS~~~l~~--l~~~~~~~---~~~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~~ 82 (104)
-+.+|..-|.++++.|.+.|.+. .++.+- .. ........ |...++.+.+.++.++ |+.|-+-||+.|++..
T Consensus 170 d~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~-~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~-Gi~VilD~V~NH~~~~ 247 (583)
T 1ea9_C 170 DLQGVIDHLDHLSKLGVNAVYFTPLFKATTN-HKYDTEDYFQIDPQFGDKDTLKKLVDLCHER-GIRVLLDAVFNHSGRT 247 (583)
T ss_dssp CHHHHHHTHHHHHHHTCSEEEECCCSSCSSS-STTSCSCTTCCCTTTCCHHHHHHHHHHHTTT-TCEEEEECCCSBCCTT
T ss_pred CHHHHHHhhHHHHHcCCCEEEECCCccCCCC-CCcCcccccccCcccCCHHHHHHHHHHHHHC-CCEEEEEEccccCCCc
Confidence 46788888999998888887754 122110 00 00001111 2456778888888888 9999999999999975
Q ss_pred hh
Q psy15899 83 GN 84 (104)
Q Consensus 83 gN 84 (104)
..
T Consensus 248 ~~ 249 (583)
T 1ea9_C 248 FP 249 (583)
T ss_dssp TH
T ss_pred cH
Confidence 44
No 19
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=76.57 E-value=1.1 Score=34.61 Aligned_cols=69 Identities=10% Similarity=-0.025 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHHhcCCCC---------CChHHHHHHHHHHHHHHhCCcceEEEeecCC
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLV--SDSMGSLSAIANPYL---------SCPIISQIYSAWCDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~--tDS~~~l~~l~~~~~---------~~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH 78 (104)
-+.+|..-|.++++.|.+.|.+- .++.+ .-++. .-|...++.+.+.++.++ |+.|-+-||+.|
T Consensus 171 ~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~-Gi~VilD~V~NH 244 (585)
T 1wzl_A 171 DLKGVIDRLPYLEELGVTALYFTPIFASPS-----HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRR-GIKIILDAVFNH 244 (585)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTT-TCEEEEEECCSB
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCcccCCC-----CCCcCcccccccCcccCCHHHHHHHHHHHHHC-CCEEEEEEcCCc
Confidence 46788888999998888877643 12211 11111 112456778888888888 999999999999
Q ss_pred CCCchh
Q psy15899 79 CGIRGN 84 (104)
Q Consensus 79 ~g~~gN 84 (104)
++....
T Consensus 245 ~~~~~~ 250 (585)
T 1wzl_A 245 AGDQFF 250 (585)
T ss_dssp CCTTSH
T ss_pred CCCccH
Confidence 997544
No 20
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=75.81 E-value=2.1 Score=33.06 Aligned_cols=74 Identities=16% Similarity=0.042 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHHhcCCCCC---------ChHHHHHHHHHHHHHHhCCcceEEEeecCC
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLV--SDSMGSLSAIANPYLS---------CPIISQIYSAWCDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~--tDS~~~l~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH 78 (104)
-+.+|..-|.++++.|.+.|.+. .++.+ ..++.. -|...++...+.++.++ |+.|-+-||+.|
T Consensus 174 ~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~-Gi~VilD~V~NH 247 (588)
T 1j0h_A 174 DLQGIIDHLDYLVDLGITGIYLTPIFRSPS-----NHKYDTADYFEVDPHFGDKETLKTLIDRCHEK-GIRVMLDAVFNH 247 (588)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHT-TCEEEEEECCSB
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcccCCC-----CCCcCccccCccCccCCCHHHHHHHHHHHHHC-CCEEEEEECcCc
Confidence 47788888999998888877654 22211 111111 12356778888888888 999999999999
Q ss_pred CCCchhHHHHH
Q psy15899 79 CGIRGNEAVDQ 89 (104)
Q Consensus 79 ~g~~gNe~AD~ 89 (104)
++.....-.|.
T Consensus 248 ~~~~~~~f~~~ 258 (588)
T 1j0h_A 248 CGYEFAPFQDV 258 (588)
T ss_dssp CCTTCHHHHHH
T ss_pred CcccchhHHHH
Confidence 99765444333
No 21
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=73.84 E-value=2.2 Score=31.29 Aligned_cols=69 Identities=10% Similarity=-0.125 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEe--ccH----HHHHHhcCCCCCC----hHHHHHHHHHHHHHHhCCcceEEEeecCCCC
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLVS--DSM----GSLSAIANPYLSC----PIISQIYSAWCDLKTVGQYYVKLMWCPSHCG 80 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~t--DS~----~~l~~l~~~~~~~----~~~~~i~~~~~~l~~~~~~~v~~~WVpgH~g 80 (104)
+.+|..-|..+.+.|.+.|.+-- ++. |.. ....... |...++.+.+.++.++ |..|-+-+|+.|++
T Consensus 20 ~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~---~d~~~id~~~~Gt~~d~~~lv~~~h~~-Gi~VilD~V~NH~~ 95 (405)
T 1ht6_A 20 YNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMP---GRLYDIDASKYGNAAELKSLIGALHGK-GVQAIADIVINHRC 95 (405)
T ss_dssp HHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSB---CCTTCGGGCTTCCHHHHHHHHHHHHHT-TCEEEEEECCSBCC
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCc---cccccCCCccCCCHHHHHHHHHHHHHC-CCEEEEEECcCccc
Confidence 67888888888888888776531 111 100 0011112 2456777788788888 99999999999988
Q ss_pred Cch
Q psy15899 81 IRG 83 (104)
Q Consensus 81 ~~g 83 (104)
...
T Consensus 96 ~~~ 98 (405)
T 1ht6_A 96 ADY 98 (405)
T ss_dssp CSE
T ss_pred CCC
Confidence 653
No 22
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=71.10 E-value=2.4 Score=33.04 Aligned_cols=68 Identities=18% Similarity=0.060 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEEe--ccHHHHHHhcCC-CC------CC---hHHHHHHHHHHHHHHhCCcceEEEeecC
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLVS--DSMGSLSAIANP-YL------SC---PIISQIYSAWCDLKTVGQYYVKLMWCPS 77 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~t--DS~~~l~~l~~~-~~------~~---~~~~~i~~~~~~l~~~~~~~v~~~WVpg 77 (104)
=+.+|+.-|.++++.|.+.|.+-- .|. ..+ +. .. |...++..++.++.++ |+.|-+-||+.
T Consensus 237 dl~Gi~~kLdYLk~LGvt~I~L~Pif~s~------~~~GYd~~dy~~idp~~Gt~~df~~LV~~aH~~-GI~VIlD~V~N 309 (645)
T 4aef_A 237 DLIGIKEKIDHLVNLGINAIYLTPIFSSL------TYHGYDIVDYFHVARRLGGDRAFVDLLSELKRF-DIKVILDGVFH 309 (645)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEEES------STTCSSEEEEEEECGGGTCHHHHHHHHHHHHHT-TCEEEEEECCS
T ss_pred CHHHHHHhhHHHHHcCCCEEEECCCCCCC------CCCCcCccCCCccCcccCCHHHHHHHHHHhhhc-CCEEEEEeccc
Confidence 377899999999988887776421 111 111 11 11 2346777788888888 99999999999
Q ss_pred CCCCchh
Q psy15899 78 HCGIRGN 84 (104)
Q Consensus 78 H~g~~gN 84 (104)
|++....
T Consensus 310 Hts~~h~ 316 (645)
T 4aef_A 310 HTSFFHP 316 (645)
T ss_dssp BCCTTSH
T ss_pred ccccCCc
Confidence 9986543
No 23
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=70.01 E-value=14 Score=28.09 Aligned_cols=69 Identities=10% Similarity=-0.155 Sum_probs=47.6
Q ss_pred H-HHHHHHHHHhhhCCCCeEEEE----------------eccHHHHHHhcCCC--CCChHHHHHHHHHHHHHHhCCcceE
Q psy15899 11 L-IAILLCLRSIKNHPAMRFLLV----------------SDSMGSLSAIANPY--LSCPIISQIYSAWCDLKTVGQYYVK 71 (104)
Q Consensus 11 l-~Ai~~aL~~~~~~~~~~v~I~----------------tDS~~~l~~l~~~~--~~~~~~~~i~~~~~~l~~~~~~~v~ 71 (104)
+ .+|..-|.++++.|.+.|.+- +|.-|- ..... +.-|...++.+++.++.++ |+.|-
T Consensus 35 ~~~gi~~~LdyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~~GY~---~~~id~~p~~Gt~~dfk~Lv~~aH~~-GI~Vi 110 (527)
T 1gcy_A 35 WYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYF---WHDFNKNGRYGSDAQLRQAASALGGA-GVKVL 110 (527)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTT---CSSSCSCSSSCCHHHHHHHHHHHHHT-TCEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccccccccccCCCCCCCCCcc---cccCCCCCCCCCHHHHHHHHHHHHHC-CCEEE
Confidence 5 888899999998887777643 111122 11111 2223467788888888888 99999
Q ss_pred EEeecCCCCCch
Q psy15899 72 LMWCPSHCGIRG 83 (104)
Q Consensus 72 ~~WVpgH~g~~g 83 (104)
+-+|+.|++...
T Consensus 111 lD~V~NHt~~~~ 122 (527)
T 1gcy_A 111 YDVVPNHMNRGY 122 (527)
T ss_dssp EEECCSBCCTTC
T ss_pred EEEeecCcCCCC
Confidence 999999998654
No 24
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=69.26 E-value=3.2 Score=30.67 Aligned_cols=69 Identities=12% Similarity=-0.006 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHHhcCCCC---------CChHHHHHHHHHHHHHHhCCcceEEEeecCC
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLV--SDSMGSLSAIANPYL---------SCPIISQIYSAWCDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~--tDS~~~l~~l~~~~~---------~~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH 78 (104)
-+.+|..-|.++.+.|.+.|.+- ..|.. ..++. .-|...++.+.+.++.++ |+.|-+-+|+.|
T Consensus 21 d~~gi~~~LdyL~~LGv~~I~L~Pi~~~~~-----~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~-Gi~VilD~V~NH 94 (441)
T 1lwj_A 21 DFRGLKNAVSYLKELGIDFVWLMPVFSSIS-----FHGYDVVDFYSFKAEYGSEREFKEMIEAFHDS-GIKVVLDLPIHH 94 (441)
T ss_dssp CHHHHHHTHHHHHHTTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHT-TCEEEEEECTTB
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCCCcCCCC-----CCCCCcccccccCcccCCHHHHHHHHHHHHHC-CCEEEEEeCCCc
Confidence 36778888889888888777642 12210 11111 112456777788788888 999999999999
Q ss_pred CCCchh
Q psy15899 79 CGIRGN 84 (104)
Q Consensus 79 ~g~~gN 84 (104)
++....
T Consensus 95 ~~~~~~ 100 (441)
T 1lwj_A 95 TGFLHT 100 (441)
T ss_dssp CCTTCH
T ss_pred ccCchH
Confidence 997654
No 25
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=67.71 E-value=3.2 Score=30.97 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEE--eccHHHHH--HhcC-CC---------CCChHHHHHHHHHHHHHHhCCcceEEEee
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLV--SDSMGSLS--AIAN-PY---------LSCPIISQIYSAWCDLKTVGQYYVKLMWC 75 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~--tDS~~~l~--~l~~-~~---------~~~~~~~~i~~~~~~l~~~~~~~v~~~WV 75 (104)
=+.+|..-|.++++.|.+.|.+- ..+...-. .-.. ++ +.-|...++.+++.++.++ |+.|-+-+|
T Consensus 41 ~~~gi~~~LdyL~~lGvt~I~l~Pi~~~~~~~~~~~~~~~GY~~~d~~~idp~~Gt~~df~~lv~~~H~~-Gi~VilD~V 119 (478)
T 2guy_A 41 TWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHER-GMYLMVDVV 119 (478)
T ss_dssp CHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTTSCSEEEEEEECTTSCCHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEeCCcccCCccccCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 36788888999988888777642 11100000 0000 01 1112456778888888888 999999999
Q ss_pred cCCCCCch
Q psy15899 76 PSHCGIRG 83 (104)
Q Consensus 76 pgH~g~~g 83 (104)
+.|++..+
T Consensus 120 ~NH~~~~~ 127 (478)
T 2guy_A 120 ANHMGYDG 127 (478)
T ss_dssp CSBCCEEB
T ss_pred cccCCCCC
Confidence 99998644
No 26
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=67.34 E-value=3.3 Score=31.67 Aligned_cols=68 Identities=12% Similarity=0.026 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHHhcCCCC---------CChHHHHHHHHHHHHHHhCCcceEEEeecCC
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLV--SDSMGSLSAIANPYL---------SCPIISQIYSAWCDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~--tDS~~~l~~l~~~~~---------~~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH 78 (104)
=+.+|..-|.++.+.|.+.|.+- .+|.. -..++. .-|...++..++.++.++ |+.|-+-+|+.|
T Consensus 30 dl~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~----~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~-Gi~VilD~V~NH 104 (557)
T 1zja_A 30 DFKGLTEKLDYLKGLGIDAIWINPHYASPN----TDNGYDISDYREVMKEYGTMEDFDRLMAELKKR-GMRLMVDVVINH 104 (557)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECCC----TTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHT-TCEEEEEECCSB
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCccCCC----CCCCCCcccccccCcccCCHHHHHHHHHHHHHC-CCEEEEEEeccc
Confidence 36788888888888887777642 11110 011111 112456777777788888 999999999999
Q ss_pred CCCc
Q psy15899 79 CGIR 82 (104)
Q Consensus 79 ~g~~ 82 (104)
++..
T Consensus 105 ts~~ 108 (557)
T 1zja_A 105 SSDQ 108 (557)
T ss_dssp CCTT
T ss_pred cccc
Confidence 9864
No 27
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=66.44 E-value=2.8 Score=31.47 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEEe--ccHHHHHHhcCCCC---------CChHHHHHHHHHHHHHHhCCcceEEEeecCC
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLVS--DSMGSLSAIANPYL---------SCPIISQIYSAWCDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~t--DS~~~l~~l~~~~~---------~~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH 78 (104)
-+.+|+.-|.++++.|.+.|.|-- .|.. -..++. .-|...++.+++.++.++ |+.|-+-+|+.|
T Consensus 30 dl~Gi~~kLdYLk~LGvt~I~L~Pi~~~~~----~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~-Gi~VilD~V~NH 104 (549)
T 4aie_A 30 DLQGIISRLDYLEKLGIDAIWLSPVYQSPG----VDNGYDISDYEAIDPQYGTMADMDELISKAKEH-HIKIVMDLVVNH 104 (549)
T ss_dssp CHHHHHTTHHHHHHHTCSEEEECCCEECCC----TTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHT-TCEEEEEECCSB
T ss_pred CHHHHHHhhHHHHHCCCCEEEeCCCcCCCC----CCCCcCccCCCCcCcccCCHHHHHHHHHHHHHC-CCEEEEEECccC
Confidence 467888889999888887776421 1110 011111 112456778888888888 999999999999
Q ss_pred CCCchh
Q psy15899 79 CGIRGN 84 (104)
Q Consensus 79 ~g~~gN 84 (104)
++....
T Consensus 105 ts~~~~ 110 (549)
T 4aie_A 105 TSDQHK 110 (549)
T ss_dssp CCTTSH
T ss_pred CcCCcc
Confidence 986543
No 28
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=65.94 E-value=2.8 Score=32.19 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHHhcCCCCC---------ChHHHHHHHHHHHHHHhCCcceEEEeecCC
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLV--SDSMGSLSAIANPYLS---------CPIISQIYSAWCDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~--tDS~~~l~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH 78 (104)
-+.+|..-|.++.+.|.+.|.+- ..|.. -..++.. -|...++..++.++.++ |+.|-+-+|+.|
T Consensus 43 dl~gi~~~LdyL~~LGv~~I~l~Pi~~~~~----~~~GYd~~dy~~idp~~Gt~~df~~lv~~aH~~-Gi~VilD~V~NH 117 (570)
T 1m53_A 43 DIRGIIEKLDYLKSLGIDAIWINPHYDSPN----TDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKR-NMRLMIDVVINH 117 (570)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECCC----TTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHT-TCEEEEEECCSB
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcccCCC----CCCCCCcccccccCcccCCHHHHHHHHHHHHHC-CCEEEEEEeccc
Confidence 36778888888888888777643 11110 0112211 12456777788888888 999999999999
Q ss_pred CCCc
Q psy15899 79 CGIR 82 (104)
Q Consensus 79 ~g~~ 82 (104)
++..
T Consensus 118 ~s~~ 121 (570)
T 1m53_A 118 TSDQ 121 (570)
T ss_dssp CCTT
T ss_pred cccc
Confidence 9864
No 29
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=63.51 E-value=3.4 Score=30.96 Aligned_cols=69 Identities=14% Similarity=-0.043 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHHhcCCCC---------CChHHHHHHHHHHHHHHhCCcceEEEeecC
Q psy15899 9 AELIAILLCLRSIKNHPAMRFLLV--SDSMGSLSAIANPYL---------SCPIISQIYSAWCDLKTVGQYYVKLMWCPS 77 (104)
Q Consensus 9 aEl~Ai~~aL~~~~~~~~~~v~I~--tDS~~~l~~l~~~~~---------~~~~~~~i~~~~~~l~~~~~~~v~~~WVpg 77 (104)
+-+.+|..-|.++.+.|.+.|.+- .+|.. ..++. .-|...++.+++.++.++ |+.|-+-+|+.
T Consensus 53 Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~-Gi~VilD~V~N 126 (488)
T 2wc7_A 53 GDLWGIMEDLDYIQNLGINAIYFTPIFQSAS-----NHRYHTHDYYQVDPMLGGNEAFKELLDAAHQR-NIKVVLDGVFN 126 (488)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEESCCEEECT-----TCTTSEEEEEEECGGGTHHHHHHHHHHHHHHT-TCEEEEEECCS
T ss_pred cCHHHHHHhhHHHHHcCCCEEEECCCCCCCC-----CCCCCCcCccccCcccCCHHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 347889999999998888777642 12210 11111 112457788888888888 99999999999
Q ss_pred CCCCch
Q psy15899 78 HCGIRG 83 (104)
Q Consensus 78 H~g~~g 83 (104)
|++...
T Consensus 127 H~s~~~ 132 (488)
T 2wc7_A 127 HSSRGF 132 (488)
T ss_dssp BCCSSS
T ss_pred cCCCcC
Confidence 998654
No 30
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=62.36 E-value=6.3 Score=29.83 Aligned_cols=70 Identities=10% Similarity=-0.094 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEe--c--c----HHHHHHhcC---------CCCCChHHHHHHHHHHHHHHhCCcceEEE
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLVS--D--S----MGSLSAIAN---------PYLSCPIISQIYSAWCDLKTVGQYYVKLM 73 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~t--D--S----~~~l~~l~~---------~~~~~~~~~~i~~~~~~l~~~~~~~v~~~ 73 (104)
+.+|..-|.++++.|.+.|.+-- . | -|...-... ..+.-|...++.+++.++.++ |+.|-+-
T Consensus 23 ~~gi~~~LdyLk~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~l~~f~~~~~idp~~Gt~~dfk~Lv~~aH~~-Gi~VilD 101 (515)
T 1hvx_A 23 WTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAA-GMQVYAD 101 (515)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCcccCCCCCCCCcCeecccccccccccCccCCCCCCHHHHHHHHHHHHHC-CCEEEEE
Confidence 56788888999888877776541 1 1 111100000 001123456778888888888 9999999
Q ss_pred eecCCCCC
Q psy15899 74 WCPSHCGI 81 (104)
Q Consensus 74 WVpgH~g~ 81 (104)
+|+.|++.
T Consensus 102 ~V~NH~~~ 109 (515)
T 1hvx_A 102 VVFDHKGG 109 (515)
T ss_dssp ECCSEECC
T ss_pred EecCCccC
Confidence 99999874
No 31
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}
Probab=59.40 E-value=4.6 Score=30.85 Aligned_cols=69 Identities=13% Similarity=0.003 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHHhcCCCCC------C---hHHHHHHHHHHHHHHhCCcceEEEeecC
Q psy15899 9 AELIAILLCLRSIKNHPAMRFLLV--SDSMGSLSAIANPYLS------C---PIISQIYSAWCDLKTVGQYYVKLMWCPS 77 (104)
Q Consensus 9 aEl~Ai~~aL~~~~~~~~~~v~I~--tDS~~~l~~l~~~~~~------~---~~~~~i~~~~~~l~~~~~~~v~~~WVpg 77 (104)
+-+.+|..-|.++.+.|.+.|.+- ..|.. -..++.. + |...++..++.++.++ |+.|-+-+|+.
T Consensus 28 Gd~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~----~~~gY~~~dy~~id~~~Gt~~d~~~lv~~~h~~-Gi~vilD~V~N 102 (555)
T 2ze0_A 28 GDLRGIIEKLDYLVELGVDIVWICPIYRSPN----ADNGYDISDYYAIMDEFGTMDDFDELLAQAHRR-GLKVILDLVIN 102 (555)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEECCC----TTTTCSCSEEEEECGGGCCHHHHHHHHHHHHHT-TCEEEEEEECS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCcccCCC----CCCCcCcccccccCcccCCHHHHHHHHHHHHHC-CCEEEEEEecc
Confidence 346788888888888888777641 11110 0011111 1 2356777777788888 99999999999
Q ss_pred CCCCc
Q psy15899 78 HCGIR 82 (104)
Q Consensus 78 H~g~~ 82 (104)
|++..
T Consensus 103 H~~~~ 107 (555)
T 2ze0_A 103 HTSDE 107 (555)
T ss_dssp BCCTT
T ss_pred cccch
Confidence 99864
No 32
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=58.84 E-value=11 Score=29.24 Aligned_cols=70 Identities=16% Similarity=0.000 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEe--ccHHHHHHhcC-CCCC------C---hHHHHHHHHHHHHHHhCCcceEEEeecCC
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLVS--DSMGSLSAIAN-PYLS------C---PIISQIYSAWCDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~t--DS~~~l~~l~~-~~~~------~---~~~~~i~~~~~~l~~~~~~~v~~~WVpgH 78 (104)
+.+|..-|.++++.|.+.|.+.- ++.. -.+ ++.. . |-..++...+.++.++ |..|-+-+|+.|
T Consensus 143 ~~gi~~~L~yl~~lGv~~I~L~Pi~~~~~----~~~wGY~~~~y~~~~~~~Gt~~d~~~lv~~~H~~-Gi~VilD~V~NH 217 (602)
T 2bhu_A 143 YRAAAEKLPYLKELGVTAIQVMPLAAFDG----QRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRL-GLGVFLDVVYNH 217 (602)
T ss_dssp HHHHHHTHHHHHHHTCCEEEECCCEECSS----SCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHT-TCEEEEEECCSC
T ss_pred HHHHHHHHHHHHHcCCCEEEECChhhccC----CCCCCcccccCcccCcCCCCHHHHHHHHHHHHHC-CCEEEEEecccc
Confidence 56777778888888887776531 1110 012 1111 1 2356788888888888 999999999999
Q ss_pred CCCchhH
Q psy15899 79 CGIRGNE 85 (104)
Q Consensus 79 ~g~~gNe 85 (104)
++..+|.
T Consensus 218 ~~~~~~~ 224 (602)
T 2bhu_A 218 FGPSGNY 224 (602)
T ss_dssp CCSSSCC
T ss_pred cccCCcc
Confidence 9977663
No 33
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*
Probab=56.55 E-value=3.4 Score=32.36 Aligned_cols=74 Identities=11% Similarity=0.029 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhhCCCCeEEEE---------eccHHHHHHhcCCCCCChHHHHHHHHHHHHHHhCCcceEEEeecCC
Q psy15899 8 IAELIAILLCLRSIKNHPAMRFLLV---------SDSMGSLSAIANPYLSCPIISQIYSAWCDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 8 ~aEl~Ai~~aL~~~~~~~~~~v~I~---------tDS~~~l~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH 78 (104)
.+-+.+|..-|.++.+.|.+.|.+- +|.-|.+.-.....+.-|...++.+.+.++.++ |+.|-+-+|+.|
T Consensus 109 ~Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~v~dy~~vdp~~Gt~~d~~~Lv~~ah~~-GI~VilD~V~NH 187 (628)
T 1g5a_A 109 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEA-GISAVVDFIFNH 187 (628)
T ss_dssp HSSHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTCCHHHHHHHHHHHHHT-TCEEEEEECCSE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCcCCcccCCcCccCCCHHHHHHHHHHHHHC-CCEEEEEEecCc
Confidence 3446677777777777677766542 122221111100011112456777778788888 999999999999
Q ss_pred CCCc
Q psy15899 79 CGIR 82 (104)
Q Consensus 79 ~g~~ 82 (104)
++..
T Consensus 188 ~s~~ 191 (628)
T 1g5a_A 188 TSNE 191 (628)
T ss_dssp EETT
T ss_pred cccc
Confidence 9854
No 34
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A
Probab=56.35 E-value=4.9 Score=31.49 Aligned_cols=71 Identities=8% Similarity=-0.048 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhhhCCCCeEEEE---------eccHHHHHHhcCCCCCC---hHHHHHHHHHHHHHHhCCcceEEEee
Q psy15899 8 IAELIAILLCLRSIKNHPAMRFLLV---------SDSMGSLSAIANPYLSC---PIISQIYSAWCDLKTVGQYYVKLMWC 75 (104)
Q Consensus 8 ~aEl~Ai~~aL~~~~~~~~~~v~I~---------tDS~~~l~~l~~~~~~~---~~~~~i~~~~~~l~~~~~~~v~~~WV 75 (104)
.+-+.+|..-|.++.+.|.+.|.|- +|.-|.+. ...... |...++.+.+.++.++ |+.|-+-+|
T Consensus 102 ~Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~~~---dy~~vdp~~Gt~~df~~Lv~~aH~~-GI~VilD~V 177 (644)
T 3czg_A 102 AGTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVS---DYGQVEPSLGSNDDLVALTSRLREA-GISLCADFV 177 (644)
T ss_dssp HSSHHHHHHTHHHHHHHTCCEEEECCCBCBCSSCCTTTTSBS---CTTSBCGGGCCHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCCcCcc---cccccCcccCCHHHHHHHHHHHHHC-CCEEEEEEe
Confidence 3456777777888877777777642 11111110 111111 2356778888888888 999999999
Q ss_pred cCCCCCc
Q psy15899 76 PSHCGIR 82 (104)
Q Consensus 76 pgH~g~~ 82 (104)
+.|++..
T Consensus 178 ~NH~s~~ 184 (644)
T 3czg_A 178 LNHTADD 184 (644)
T ss_dssp CSEEETT
T ss_pred cCCcccc
Confidence 9998854
No 35
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=56.03 E-value=4.4 Score=31.01 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHHhcCCCCC---------ChHHHHHHHHHHHHHHhCCcceEEEeecCC
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLV--SDSMGSLSAIANPYLS---------CPIISQIYSAWCDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~--tDS~~~l~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH 78 (104)
-+.+|..-|.++.+.|.+.|.+- ..|.. -..++.. -|...++.+++.++.++ |+.|-+-+|+.|
T Consensus 29 dl~gi~~~ldyl~~LGv~~I~l~Pi~~~~~----~~~GYd~~dy~~id~~~Gt~~df~~lv~~~h~~-Gi~VilD~V~NH 103 (558)
T 1uok_A 29 DLRGIISKLDYLKELGIDVIWLSPVYESPN----DDNGYDISDYCKIMNEFGTMEDWDELLHEMHER-NMKLMMDLVVNH 103 (558)
T ss_dssp CHHHHHTTHHHHHHHTCCEEEECCCEECCC----TTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHT-TCEEEEEECCSB
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcccCCC----CCCCCCcccccccCcccCCHHHHHHHHHHHHHC-CCEEEEEEeccc
Confidence 36678888888888888777652 12210 0112211 12356777778788888 999999999999
Q ss_pred CCCc
Q psy15899 79 CGIR 82 (104)
Q Consensus 79 ~g~~ 82 (104)
++..
T Consensus 104 ~s~~ 107 (558)
T 1uok_A 104 TSDE 107 (558)
T ss_dssp CCTT
T ss_pred cccc
Confidence 9864
No 36
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=55.90 E-value=5.1 Score=30.59 Aligned_cols=69 Identities=16% Similarity=0.047 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEEe--ccHHHHHHhcCCCCC---------ChHHHHHHHHHHHHHHhCCcceEEEeecCC
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLVS--DSMGSLSAIANPYLS---------CPIISQIYSAWCDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~t--DS~~~l~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH 78 (104)
-+.+|..-|.++.+.|.+.|.+-- .|.. -..++.. -|...++..++.++.++ |+.|-+-+|+.|
T Consensus 29 dl~gi~~~Ldyl~~LGv~~I~l~Pi~~~~~----~~~GY~~~dy~~idp~~Gt~~df~~lv~~~h~~-Gi~VilD~V~NH 103 (543)
T 2zic_A 29 DLKGITSKLDYLQKLGVMAIWLSPVYDSPM----DDNGYDIANYEAIADIFGNMADMDNLLTQAKMR-GIKIIMDLVVNH 103 (543)
T ss_dssp CHHHHHHTHHHHHHHTCSEEEECCCEECCC----TTTTSSCSEEEEECGGGCCHHHHHHHHHHHHTT-TCEEEEEECCSB
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcccCCC----CCCCCCcccccccCcccCCHHHHHHHHHHHHHC-CCEEEEEEecCc
Confidence 467788888888887777775421 1110 0111111 12356777777788888 999999999999
Q ss_pred CCCch
Q psy15899 79 CGIRG 83 (104)
Q Consensus 79 ~g~~g 83 (104)
++...
T Consensus 104 ~s~~~ 108 (543)
T 2zic_A 104 TSDEH 108 (543)
T ss_dssp CCTTS
T ss_pred ccccc
Confidence 98654
No 37
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A
Probab=54.73 E-value=6.1 Score=30.78 Aligned_cols=68 Identities=21% Similarity=0.088 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhh-CCCCeEEEE--eccHHHHHHhcCCCCC---------ChHHHHHHHHHHHHHHhCC--c--ceEE
Q psy15899 9 AELIAILLCLRSIKN-HPAMRFLLV--SDSMGSLSAIANPYLS---------CPIISQIYSAWCDLKTVGQ--Y--YVKL 72 (104)
Q Consensus 9 aEl~Ai~~aL~~~~~-~~~~~v~I~--tDS~~~l~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~--~--~v~~ 72 (104)
+=+.+|..-|.++++ .|.+.|.+- .+|.. .-++.. -|...++...+.++.++ | + .|-+
T Consensus 188 G~~~gi~~~LdyLk~~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~id~~~Gt~~dfk~LV~~~H~~-G~~I~~~VIl 261 (637)
T 1ji1_A 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPT-----NHKYDTQDYMAVDPAFGDNSTLQTLINDIHST-ANGPKGYLIL 261 (637)
T ss_dssp CCHHHHHHTHHHHHTTTCCCEEEESCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHCS-SSSSCCEEEE
T ss_pred cCHHHHHHhHHHHHhccCCCEEEECCCccCCC-----CCCcCccchhhhccccCCHHHHHHHHHHHHhC-CCCccceEEE
Confidence 347888889999999 988887652 22221 111111 12356788888888888 9 9 9999
Q ss_pred EeecCCCCCc
Q psy15899 73 MWCPSHCGIR 82 (104)
Q Consensus 73 ~WVpgH~g~~ 82 (104)
-||+.|++..
T Consensus 262 D~V~NH~~~~ 271 (637)
T 1ji1_A 262 DGVFNHTGDS 271 (637)
T ss_dssp EECCSBCCTT
T ss_pred EECcccCCCC
Confidence 9999999874
No 38
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*
Probab=54.63 E-value=7.2 Score=30.15 Aligned_cols=69 Identities=14% Similarity=0.063 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHHhcCCCC---------CChHHHHHHHHHHHHHHhCCcceEEEeecCC
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLV--SDSMGSLSAIANPYL---------SCPIISQIYSAWCDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~--tDS~~~l~~l~~~~~---------~~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH 78 (104)
-+.+|..-|.++.+.|.+.|.+- ..|... ..++. .-|...++..++.++.++ |+.|-+-+|+.|
T Consensus 38 dl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~----~~GY~~~dy~~id~~~Gt~~df~~lv~~~h~~-Gi~VilD~V~NH 112 (589)
T 3aj7_A 38 DMKGIASKLEYIKELGADAIWISPFYDSPQD----DMGYDIANYEKVWPTYGTNEDCFALIEKTHKL-GMKFITDLVINH 112 (589)
T ss_dssp CHHHHHHTHHHHHHHTCSEEEECCCEECCCT----TTTSSCSEEEEECTTTCCHHHHHHHHHHHHHT-TCEEEEEECCSB
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcccCCCC----CCCcCcccccccccccCCHHHHHHHHHHHHHC-CCEEEEEecccc
Confidence 36778888888888888877652 122100 11111 112356777777788888 999999999999
Q ss_pred CCCch
Q psy15899 79 CGIRG 83 (104)
Q Consensus 79 ~g~~g 83 (104)
++...
T Consensus 113 ~~~~~ 117 (589)
T 3aj7_A 113 CSSEH 117 (589)
T ss_dssp CCTTS
T ss_pred cccch
Confidence 98643
No 39
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=53.60 E-value=4.9 Score=29.87 Aligned_cols=70 Identities=13% Similarity=-0.112 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHHhcCCCC---------CChHHHHHHHHHHHHHHhCCcceEEEeecC
Q psy15899 9 AELIAILLCLRSIKNHPAMRFLLV--SDSMGSLSAIANPYL---------SCPIISQIYSAWCDLKTVGQYYVKLMWCPS 77 (104)
Q Consensus 9 aEl~Ai~~aL~~~~~~~~~~v~I~--tDS~~~l~~l~~~~~---------~~~~~~~i~~~~~~l~~~~~~~v~~~WVpg 77 (104)
+-+.+|..-|.++++.|.+.|.+- .+|.+ ..++. .-|...++.+.+.++.++ |+.|-+-+|+.
T Consensus 47 G~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~-----~~gY~~~dy~~idp~~Gt~~df~~lv~~~h~~-Gi~VilD~V~N 120 (475)
T 2z1k_A 47 GTLWGVAEKLPYLLDLGVEAIYLNPVFASTA-----NHRYHTVDYFQVDPILGGNEALRHLLEVAHAH-GVRVILDGVFN 120 (475)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEEESS-----TTCCSEEEEEEECGGGTCHHHHHHHHHHHHHT-TCEEEEEECCS
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCcCCCC-----CCCcCCCCcCccCcccCCHHHHHHHHHHHHHC-CCEEEEEEecc
Confidence 347788888999988887777642 12210 11111 112356778888888888 99999999999
Q ss_pred CCCCchh
Q psy15899 78 HCGIRGN 84 (104)
Q Consensus 78 H~g~~gN 84 (104)
|++....
T Consensus 121 H~~~~~~ 127 (475)
T 2z1k_A 121 HTGRGFF 127 (475)
T ss_dssp BCCTTSH
T ss_pred cccCCCH
Confidence 9986543
No 40
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=50.72 E-value=15 Score=26.95 Aligned_cols=72 Identities=7% Similarity=-0.046 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEe-----ccHHHHHHhcCC---CC---------CChHHHHHHHHHHHHHHhCCcceEEE
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLVS-----DSMGSLSAIANP---YL---------SCPIISQIYSAWCDLKTVGQYYVKLM 73 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~t-----DS~~~l~~l~~~---~~---------~~~~~~~i~~~~~~l~~~~~~~v~~~ 73 (104)
+.+|..-|..+.+.|.+.|.+-- ++..--..+.++ +. .-|-..++.+.+.++.++ |+.|-+-
T Consensus 16 ~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~~~~~gY~~~~y~~~~~~~G~~~d~~~lv~~~h~~-Gi~VilD 94 (422)
T 1ua7_A 16 FNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAAEEY-GIKVIVD 94 (422)
T ss_dssp HHHHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHHHHHHHHHHTT-TCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCccccccCCcCcCccCCccccccceeeeccCCCCCCHHHHHHHHHHHHHC-CCEEEEE
Confidence 45677778888888877776532 111000000000 00 113456778888888888 9999999
Q ss_pred eecCCCCCch
Q psy15899 74 WCPSHCGIRG 83 (104)
Q Consensus 74 WVpgH~g~~g 83 (104)
+|+.|++...
T Consensus 95 ~V~NH~~~~~ 104 (422)
T 1ua7_A 95 AVINHTTFDY 104 (422)
T ss_dssp ECCSBCCSCT
T ss_pred eccCcccCCc
Confidence 9999987643
No 41
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=50.27 E-value=17 Score=28.34 Aligned_cols=72 Identities=13% Similarity=-0.044 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCC-CC---------CChHHHHHHHHHHHHHHhCCcceEEEeecCCCC
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANP-YL---------SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCG 80 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~tDS~~~l~~l~~~-~~---------~~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH~g 80 (104)
+.++..-|..+.+.|.+.|.+--=.+.. .-.++ +. .-|-..++...+.++.++ |+.|-+-+|+.|+|
T Consensus 153 ~~~~~~~L~yl~~lGv~~v~l~Pi~~~~--~~~~~GY~~~~~~~~~~~~G~~~~~~~lv~~~H~~-Gi~VilD~V~NH~~ 229 (618)
T 3m07_A 153 FRAAIAKLPYLAELGVTVIEVMPVAQFG--GERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGY-GLSVVLDIVLNHFG 229 (618)
T ss_dssp HHHHHTTHHHHHHHTCCEEEECCCEECS--SSCCCSTTCCEEEEECTTTCCHHHHHHHHHHHHHT-TCEEEEEECCSCCC
T ss_pred HHHHHHHHHHHHHcCCCEEEeCChhccC--CCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHC-CCEEEEeecCccCC
Confidence 4566667777777777777542110000 00111 11 112346777777788888 99999999999999
Q ss_pred CchhH
Q psy15899 81 IRGNE 85 (104)
Q Consensus 81 ~~gNe 85 (104)
..+|-
T Consensus 230 ~~~~~ 234 (618)
T 3m07_A 230 PEGNY 234 (618)
T ss_dssp SSSCC
T ss_pred CCccc
Confidence 77664
No 42
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A
Probab=48.87 E-value=12 Score=30.19 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=43.3
Q ss_pred HHHHHH-HHHHhhhCCCCeEEEE--eccHHHHHHhcCC-CCC------C---hHHHHHHHHHHHHHHhCCcceEEEeecC
Q psy15899 11 LIAILL-CLRSIKNHPAMRFLLV--SDSMGSLSAIANP-YLS------C---PIISQIYSAWCDLKTVGQYYVKLMWCPS 77 (104)
Q Consensus 11 l~Ai~~-aL~~~~~~~~~~v~I~--tDS~~~l~~l~~~-~~~------~---~~~~~i~~~~~~l~~~~~~~v~~~WVpg 77 (104)
+.++.. .|.++.+.|.+.|.+. .++.. -.++ +.. . |...++...+.++.++ |+.|-+-||+.
T Consensus 200 ~~~l~~~~L~yLk~LGvt~I~L~Pi~e~~~----~~~~GY~~~dy~a~~~~~Gt~~df~~lv~~~H~~-Gi~VilD~V~N 274 (755)
T 3aml_A 200 YREFADNVLPRIRANNYNTVQLMAIMEHSY----YASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSL-GLRVLMDVVHS 274 (755)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEESCEECSC----GGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHT-TCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHcCCCEEEECchhcCCC----CCCCCCccCCCCccCCCCCCHHHHHHHHHHHHHC-CCEEEEEEecc
Confidence 445555 4888888888888765 11100 0111 111 1 2356778888888888 99999999999
Q ss_pred CCCCc
Q psy15899 78 HCGIR 82 (104)
Q Consensus 78 H~g~~ 82 (104)
|++..
T Consensus 275 H~~~~ 279 (755)
T 3aml_A 275 HASNN 279 (755)
T ss_dssp CBCCC
T ss_pred ccccc
Confidence 98653
No 43
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A
Probab=48.84 E-value=18 Score=28.77 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeecCCCCCch
Q psy15899 52 ISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRG 83 (104)
Q Consensus 52 ~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~~g 83 (104)
+.++.+.+.++.++ |+.|-+-+|+.|++..+
T Consensus 378 ~~efk~LV~~aH~~-GIkVIlDvV~NHts~~h 408 (884)
T 4aio_A 378 IIEYRQMVQALNRI-GLRVVMDVVYNHLDSSG 408 (884)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEECCSBCSCCS
T ss_pred HHHHHHHHHHHHhc-CCceeeeeccccccCCC
Confidence 45677788888888 99999999999997643
No 44
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=48.64 E-value=19 Score=27.51 Aligned_cols=69 Identities=14% Similarity=0.028 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEe--ccHHHHHHhcCC-CCC---------ChHHHHHHHHHHHHHHhCCcceEEEeecCC
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLVS--DSMGSLSAIANP-YLS---------CPIISQIYSAWCDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~t--DS~~~l~~l~~~-~~~---------~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH 78 (104)
+.++..-|..+.+.|.+.|.+-- ++.. -.+| +.. -|-..++...+.++.++ |+.|-+-+|+.|
T Consensus 118 ~~~~~~~l~~l~~lG~~~v~l~Pi~~~~~----~~~~GY~~~~~~~~~~~~Gt~~d~~~lv~~~h~~-Gi~VilD~V~NH 192 (558)
T 3vgf_A 118 FEGVIRKLDYLKDLGITAIEIMPIAQFPG----KRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKK-GLGVILDVVYNH 192 (558)
T ss_dssp HHHHHHTHHHHHHHTCCEEEECCCEECSS----SCCCSTTCCEEEEECGGGTHHHHHHHHHHHHHHT-TCEEEEEECCSC
T ss_pred HHHHHHHHHHHHHcCCcEEEECCcccCCC----CCCcCcccccccccccccCCHHHHHHHHHHHHHc-CCEEEEEEeecc
Confidence 45666777888777777776421 1100 0111 111 12356778888888888 999999999999
Q ss_pred CCCchh
Q psy15899 79 CGIRGN 84 (104)
Q Consensus 79 ~g~~gN 84 (104)
++..+|
T Consensus 193 ~~~~~~ 198 (558)
T 3vgf_A 193 VGPEGN 198 (558)
T ss_dssp CCSSSC
T ss_pred ccCCCC
Confidence 986654
No 45
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=47.75 E-value=62 Score=22.69 Aligned_cols=30 Identities=13% Similarity=-0.050 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHhhhCCCCeEEEEeccH
Q psy15899 7 GIAELIAILLCLRSIKNHPAMRFLLVSDSM 36 (104)
Q Consensus 7 ~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~ 36 (104)
|.+=..++...++++.+.|.+.+++|.-|.
T Consensus 50 H~~G~~~~~~iv~~c~~lGI~~lTlYaFSt 79 (256)
T 4h8e_A 50 HYEGMQTIKKITRIASDIGVKYLTLYAFST 79 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEch
Confidence 455567788889999999999999999975
No 46
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=47.43 E-value=25 Score=27.80 Aligned_cols=32 Identities=19% Similarity=0.022 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeecCCCCCchh
Q psy15899 52 ISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGN 84 (104)
Q Consensus 52 ~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~~gN 84 (104)
..++.+.+.++.++ |+.|-+-+|+.|++..++
T Consensus 315 ~~dfk~LV~~aH~~-GI~VIlDvV~NHt~~~~~ 346 (718)
T 2e8y_A 315 KTELKQMINTLHQH-GLRVILDVVFNHVYKREN 346 (718)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEECTTCCSSGGG
T ss_pred HHHHHHHHHHHHHC-CCEEEEEEecccccCccc
Confidence 47788888888888 999999999999998775
No 47
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=45.99 E-value=6.9 Score=30.87 Aligned_cols=75 Identities=12% Similarity=0.054 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhhCCCCeEEEEe--ccHHHHHHhcCCCC---------CChHHHHHHHHHHHHHHhCCcceEEEeecC
Q psy15899 9 AELIAILLCLRSIKNHPAMRFLLVS--DSMGSLSAIANPYL---------SCPIISQIYSAWCDLKTVGQYYVKLMWCPS 77 (104)
Q Consensus 9 aEl~Ai~~aL~~~~~~~~~~v~I~t--DS~~~l~~l~~~~~---------~~~~~~~i~~~~~~l~~~~~~~v~~~WVpg 77 (104)
+=+.+|..-|.++.+.|.+.|.+-- .|.+ ..++. .-|...++.+++.++.++ |+.|-+-+|+.
T Consensus 262 Gdl~Gi~~kLdyLk~LGvt~IwL~Pi~~s~~-----~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~-GikVilD~V~N 335 (696)
T 4aee_A 262 GDLAGIMKHIDHLEDLGVETIYLTPIFSSTS-----YHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSR-KIKIVLDITMH 335 (696)
T ss_dssp CCHHHHHTTHHHHHHHTCCEEEECCCEEESS-----SSCCSEEEEEEECGGGCCHHHHHHHHHHHHHT-TCEEEEEECSS
T ss_pred cCHHHHHHHhHHHHHcCCCEEEECCcccCCC-----CCCcCcccccccCcccCCHHHHHHHHHHHHHC-CCEEEEecccc
Confidence 3478888889999888877776421 1110 11111 112356777778788888 99999999999
Q ss_pred CCCCchhHHHHH
Q psy15899 78 HCGIRGNEAVDQ 89 (104)
Q Consensus 78 H~g~~gNe~AD~ 89 (104)
|++....--.|.
T Consensus 336 Hts~~~~~f~~~ 347 (696)
T 4aee_A 336 HTNPCNELFVKA 347 (696)
T ss_dssp EECTTSHHHHHH
T ss_pred ccCccCHHHHHH
Confidence 999765444343
No 48
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=45.13 E-value=22 Score=26.21 Aligned_cols=71 Identities=7% Similarity=-0.248 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhCCCCeEEEE----ecc-----HHHHHHhc---C------CCCCChHHHHHHHHHHHHHHhCCcceEE
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLV----SDS-----MGSLSAIA---N------PYLSCPIISQIYSAWCDLKTVGQYYVKL 72 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~----tDS-----~~~l~~l~---~------~~~~~~~~~~i~~~~~~l~~~~~~~v~~ 72 (104)
+.+|..-|..+.+.|.+.|.+- +.+ -|...-.. + ..+.-|-..++.+.+.++.++ |+.|-+
T Consensus 27 ~~gi~~~Ldyl~~lGvt~I~l~Pi~~~~~~~~~~gY~~~dy~~lg~~~~~~~id~~~Gt~~df~~lv~~~H~~-Gi~Vil 105 (435)
T 1mxg_A 27 WDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAY-GIKVIA 105 (435)
T ss_dssp HHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCcCcccccccccccccCcCCCCCCCHHHHHHHHHHHHHC-CCEEEE
Confidence 5677788888887777766543 111 11000000 0 001112456778888888888 999999
Q ss_pred EeecCCCCCc
Q psy15899 73 MWCPSHCGIR 82 (104)
Q Consensus 73 ~WVpgH~g~~ 82 (104)
-+|+.|++..
T Consensus 106 D~V~NH~~~~ 115 (435)
T 1mxg_A 106 DVVINHRAGG 115 (435)
T ss_dssp EECCSBCCCC
T ss_pred EECcccccCC
Confidence 9999999864
No 49
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=43.94 E-value=27 Score=27.06 Aligned_cols=67 Identities=13% Similarity=-0.007 Sum_probs=43.0
Q ss_pred HHHHHHHH-HHhhhCCCCeEEEEe--ccHHHHHHhcCC-CCC------C---hHHHHHHHHHHHHHHhCCcceEEEeecC
Q psy15899 11 LIAILLCL-RSIKNHPAMRFLLVS--DSMGSLSAIANP-YLS------C---PIISQIYSAWCDLKTVGQYYVKLMWCPS 77 (104)
Q Consensus 11 l~Ai~~aL-~~~~~~~~~~v~I~t--DS~~~l~~l~~~-~~~------~---~~~~~i~~~~~~l~~~~~~~v~~~WVpg 77 (104)
+.++..-| .++++.|.+.|.+.- ++.. -.++ +.. . |...++...+.++.++ |+.|-+-||+.
T Consensus 154 ~~~i~~~ll~yl~~lGv~~i~l~Pi~~~~~----~~~~GY~~~~y~~~~~~~Gt~~~~~~lv~~~H~~-Gi~VilD~V~N 228 (617)
T 1m7x_A 154 YRELADQLVPYAKWMGFTHLELLPINEHPF----DGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAA-GLNVILDWVPG 228 (617)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEESCCEECSC----GGGTTSSCSEEEEECGGGSCHHHHHHHHHHHHHT-TCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEecccccCCC----CCCCCcccccCCccCccCCCHHHHHHHHHHHHHC-CCEEEEEEecC
Confidence 45666664 888888888776531 1110 0111 111 1 2356778888888888 99999999999
Q ss_pred CCCCc
Q psy15899 78 HCGIR 82 (104)
Q Consensus 78 H~g~~ 82 (104)
|++..
T Consensus 229 H~~~~ 233 (617)
T 1m7x_A 229 HFPTD 233 (617)
T ss_dssp SCCCS
T ss_pred cccCc
Confidence 99654
No 50
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=43.80 E-value=35 Score=22.15 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=21.5
Q ss_pred HHHHHHHhCCcceEEEeecCCCCCchhHHHHHHHcc
Q psy15899 58 AWCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAKD 93 (104)
Q Consensus 58 ~~~~l~~~~~~~v~~~WVpgH~g~~gNe~AD~lAk~ 93 (104)
....|.+. |.++.+.||||=--+|. .|.+||+.
T Consensus 34 A~~~l~~~-G~~i~v~~VPGafEiP~--aa~~la~~ 66 (157)
T 2i0f_A 34 AKAALDEA-GATYDVVTVPGALEIPA--TISFALDG 66 (157)
T ss_dssp HHHHHHHT-TCEEEEEEESSGGGHHH--HHHHHHHH
T ss_pred HHHHHHHc-CCCeEEEECCcHHHHHH--HHHHHHhh
Confidence 34455555 88899999998654443 45566654
No 51
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=42.86 E-value=29 Score=27.82 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=42.5
Q ss_pred HHHHHHHH-HHhhhCCCCeEEEEeccHHHHHHhcCC-CCC------C---hHHHHHHHHHHHHHHhCCcceEEEeecCCC
Q psy15899 11 LIAILLCL-RSIKNHPAMRFLLVSDSMGSLSAIANP-YLS------C---PIISQIYSAWCDLKTVGQYYVKLMWCPSHC 79 (104)
Q Consensus 11 l~Ai~~aL-~~~~~~~~~~v~I~tDS~~~l~~l~~~-~~~------~---~~~~~i~~~~~~l~~~~~~~v~~~WVpgH~ 79 (104)
+.++..-| ..+.+.|.+.|.+--=.+.... .+| +.. . |...++...+.++.++ |+.|-+-||+.|+
T Consensus 262 ~~~l~~~l~~yLk~lG~t~I~L~Pi~e~~~~--~~wGY~~~~y~a~~~~yGt~~dfk~lV~~~H~~-GI~VilD~V~NH~ 338 (722)
T 3k1d_A 262 YRQLARELTDYIVDQGFTHVELLPVAEHPFA--GSWGYQVTSYYAPTSRFGTPDDFRALVDALHQA-GIGVIVDWVPAHF 338 (722)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEESCCEECSCG--GGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHT-TCEEEEEECTTCC
T ss_pred HHHHHHHHHHHHHHcCCCeEEECCcccCCCC--CCCCCCcccCcCccccCCCHHHHHHHHHHHHHc-CCEEEEEEEeecc
Confidence 34555555 7777777777765322111000 011 111 1 1346777888888888 9999999999998
Q ss_pred CCch
Q psy15899 80 GIRG 83 (104)
Q Consensus 80 g~~g 83 (104)
+..+
T Consensus 339 ~~~~ 342 (722)
T 3k1d_A 339 PKDA 342 (722)
T ss_dssp CCCT
T ss_pred CCcc
Confidence 7653
No 52
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=42.34 E-value=18 Score=26.85 Aligned_cols=70 Identities=16% Similarity=-0.061 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhCCCCeEEEE------e--ccHHHHHHhcC---------CCCCChHHHHHHHHHHHHHHhCCcceEEE
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLV------S--DSMGSLSAIAN---------PYLSCPIISQIYSAWCDLKTVGQYYVKLM 73 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~------t--DS~~~l~~l~~---------~~~~~~~~~~i~~~~~~l~~~~~~~v~~~ 73 (104)
+.+|..-|.++.+.|.+.|.+- + |.-|.+.-... ..+.-|...++.+++.++.++ |+.|-+-
T Consensus 24 ~~gi~~~LdyL~~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~~~~~~q~~~idp~~Gt~~df~~Lv~~aH~~-Gi~VilD 102 (485)
T 1wpc_A 24 WNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNN-GIQVYGD 102 (485)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCCeecccccccccccCccCCCCCCHHHHHHHHHHHHHC-CCEEEEE
Confidence 5678888888888777776653 1 11111100000 001123456778888888888 9999999
Q ss_pred eecCCCCC
Q psy15899 74 WCPSHCGI 81 (104)
Q Consensus 74 WVpgH~g~ 81 (104)
+|+-|++.
T Consensus 103 ~V~NH~~~ 110 (485)
T 1wpc_A 103 VVMNHKGG 110 (485)
T ss_dssp ECCSEECS
T ss_pred EeccccCC
Confidence 99999864
No 53
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=41.25 E-value=30 Score=28.39 Aligned_cols=32 Identities=13% Similarity=-0.090 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeecCCCCCchh
Q psy15899 52 ISQIYSAWCDLKTVGQYYVKLMWCPSHCGIRGN 84 (104)
Q Consensus 52 ~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~~gN 84 (104)
..++...+.++.++ |+.|-+-||+.|++..++
T Consensus 531 ~~dfk~LV~~aH~~-GI~VILDvV~NHt~~~~~ 562 (921)
T 2wan_A 531 ITELKQLIQSLHQQ-RIGVNMDVVYNHTFDVMV 562 (921)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEECTTCCSCSSS
T ss_pred HHHHHHHHHHHHHc-CCEEEEEEcccccccccc
Confidence 46788888888888 999999999999988764
No 54
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=40.86 E-value=16 Score=26.55 Aligned_cols=30 Identities=7% Similarity=-0.163 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhCCcceEEEeecCCCCC
Q psy15899 51 IISQIYSAWCDLKTVGQYYVKLMWCPSHCGI 81 (104)
Q Consensus 51 ~~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~ 81 (104)
...++.+++.++.++ |+.|-+-+|+-|++.
T Consensus 75 t~~df~~lv~~aH~~-Gi~VilD~V~NH~~~ 104 (496)
T 4gqr_A 75 NEDEFRNMVTRCNNV-GVRIYVDAVINHMCG 104 (496)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEEEECCSEEEE
T ss_pred CHHHHHHHHHHHHHC-CCEEEEEEccCcCCC
Confidence 456788888888888 999999999999753
No 55
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=40.50 E-value=13 Score=27.37 Aligned_cols=71 Identities=13% Similarity=-0.034 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEe--ccHHHH--H------HhcCCCCCC---hHHHHHHHHHHHHHHhCCcceEEEeecC
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLVS--DSMGSL--S------AIANPYLSC---PIISQIYSAWCDLKTVGQYYVKLMWCPS 77 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~t--DS~~~l--~------~l~~~~~~~---~~~~~i~~~~~~l~~~~~~~v~~~WVpg 77 (104)
+.+|..-|.++.+.|.+.|.|-- .|...- . .....+.-+ |-..++.+.+.++.++ |+.|-+-+|+.
T Consensus 29 ~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~~~~Gt~~~~~~lv~~~h~~-Gi~vi~D~V~N 107 (449)
T 3dhu_A 29 FAGVTADLQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHEL-GMKVMLDIVYN 107 (449)
T ss_dssp HHHHHTTHHHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCCGGGCCHHHHHHHHHHHHHT-TCEEEEEECCS
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHC-CCEEEEEEccC
Confidence 56777778888877777776532 110000 0 000000111 2346777777788888 99999999999
Q ss_pred CCCCc
Q psy15899 78 HCGIR 82 (104)
Q Consensus 78 H~g~~ 82 (104)
|++..
T Consensus 108 H~~~~ 112 (449)
T 3dhu_A 108 HTSPD 112 (449)
T ss_dssp EECTT
T ss_pred cCcCc
Confidence 98864
No 56
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=40.42 E-value=21 Score=26.54 Aligned_cols=70 Identities=10% Similarity=-0.133 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEe----cc----HHHHHHhcC---------CCCCChHHHHHHHHHHHHHHhCCcceEEE
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLVS----DS----MGSLSAIAN---------PYLSCPIISQIYSAWCDLKTVGQYYVKLM 73 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~t----DS----~~~l~~l~~---------~~~~~~~~~~i~~~~~~l~~~~~~~v~~~ 73 (104)
+.+|..-|.++.+.|.+.|.+-- .| -|...-... ..+.-|...++.+++.++.++ |+.|-+-
T Consensus 22 ~~gi~~~LdyL~~LGvt~I~l~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~idp~~Gt~~df~~lv~~aH~~-Gi~VilD 100 (480)
T 1ud2_A 22 WNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSN-DINVYGD 100 (480)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCcCccchhhcccccccCccCCCCCCHHHHHHHHHHHHHC-CCEEEEE
Confidence 56778888888887777775431 11 111100000 001123456788888888888 9999999
Q ss_pred eecCCCCC
Q psy15899 74 WCPSHCGI 81 (104)
Q Consensus 74 WVpgH~g~ 81 (104)
+|+-|++.
T Consensus 101 ~V~NH~~~ 108 (480)
T 1ud2_A 101 VVMNHKMG 108 (480)
T ss_dssp ECCSEECC
T ss_pred EccCcccc
Confidence 99999864
No 57
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=39.31 E-value=22 Score=26.41 Aligned_cols=70 Identities=9% Similarity=-0.123 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEe--------ccHHHHHHhcC---------CCCCChHHHHHHHHHHHHHHhCCcceEEE
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLVS--------DSMGSLSAIAN---------PYLSCPIISQIYSAWCDLKTVGQYYVKLM 73 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~t--------DS~~~l~~l~~---------~~~~~~~~~~i~~~~~~l~~~~~~~v~~~ 73 (104)
+.+|..-|.++.+.|.+.|.+-- |.-|...-... ..+.-|...++.+++.++.++ |+.|-+-
T Consensus 20 ~~gi~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~id~~~Gt~~df~~lv~~aH~~-Gi~VilD 98 (483)
T 3bh4_A 20 WKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSR-NVQVYGD 98 (483)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCSEESSTTSCSSSEEETTCSSCSCCSSCSSCSSCCHHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEcCccccCCCCCCCCcccccccccccccccCccCCCCCCHHHHHHHHHHHHHC-CCEEEEE
Confidence 56778888888887777666531 11111100000 001123456788888888888 9999999
Q ss_pred eecCCCCC
Q psy15899 74 WCPSHCGI 81 (104)
Q Consensus 74 WVpgH~g~ 81 (104)
+|+.|++.
T Consensus 99 ~V~NH~~~ 106 (483)
T 3bh4_A 99 VVLNHKAG 106 (483)
T ss_dssp ECCSEECC
T ss_pred EccCcccC
Confidence 99999874
No 58
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Probab=38.96 E-value=21 Score=29.24 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhhCCCCeEEEEe--ccHHH---HHHhcCC-------C-------CCChHHHHHHHHHHHHHHhCCcceEE
Q psy15899 12 IAILLCLRSIKNHPAMRFLLVS--DSMGS---LSAIANP-------Y-------LSCPIISQIYSAWCDLKTVGQYYVKL 72 (104)
Q Consensus 12 ~Ai~~aL~~~~~~~~~~v~I~t--DS~~~---l~~l~~~-------~-------~~~~~~~~i~~~~~~l~~~~~~~v~~ 72 (104)
.+|..-|.++.+.|.+.|.+-- .+..- ......+ + ..-|-..++..++.++.++ |+.|-+
T Consensus 633 ~gi~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~GY~~~d~~~i~es~~~~~Gt~~df~~lv~~~H~~-GI~Vil 711 (844)
T 3aie_A 633 VVIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSK-GIKVMA 711 (844)
T ss_dssp HHHHHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSCBTTBCHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEECCcccCCCCCccccccCCCCCccccCccCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEE
Confidence 4566678888888877776531 10000 0000111 1 1112457788888888888 999999
Q ss_pred EeecCCCC
Q psy15899 73 MWCPSHCG 80 (104)
Q Consensus 73 ~WVpgH~g 80 (104)
-|||.|++
T Consensus 712 D~V~NH~~ 719 (844)
T 3aie_A 712 DWVPDQMY 719 (844)
T ss_dssp EECCSEEC
T ss_pred EEccCccc
Confidence 99999985
No 59
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=38.04 E-value=19 Score=27.77 Aligned_cols=71 Identities=7% Similarity=-0.095 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEe--ccHHHHHHhcCCCC--------CChHHHHHHHHHHHHHHhCCcceEEEeecCCCC
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLVS--DSMGSLSAIANPYL--------SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCG 80 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~t--DS~~~l~~l~~~~~--------~~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH~g 80 (104)
+.+|..-|.++.+.|.+.|.|-- .|...-..-.+... .-|-..++.+++.++.++ |+.|-+-.|+-|++
T Consensus 147 l~gi~~~Ldyl~~LGv~aI~l~Pi~~~~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~~aH~~-Gi~VilD~V~NH~~ 225 (601)
T 3edf_A 147 IRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKR-GMGLIQDVVLSHIG 225 (601)
T ss_dssp HHHHHHTHHHHHHTTCCEEEESCCEECCCSSSGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHT-TCEEEEEECCSBCC
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCcCccccccccccCCCHHHHHHHHHHHHHc-CCEEEEEECCcccC
Confidence 78899999999988888776421 11000000000001 112346777777788888 99999999999998
Q ss_pred Cc
Q psy15899 81 IR 82 (104)
Q Consensus 81 ~~ 82 (104)
..
T Consensus 226 ~~ 227 (601)
T 3edf_A 226 KH 227 (601)
T ss_dssp TT
T ss_pred Cc
Confidence 64
No 60
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=36.11 E-value=33 Score=25.42 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhhCCCCeEEEE----eccHHHHHHhcC-CCC---------CChHHHHHHHHHHHHHHhCCcceEEEe
Q psy15899 9 AELIAILLCLRSIKNHPAMRFLLV----SDSMGSLSAIAN-PYL---------SCPIISQIYSAWCDLKTVGQYYVKLMW 74 (104)
Q Consensus 9 aEl~Ai~~aL~~~~~~~~~~v~I~----tDS~~~l~~l~~-~~~---------~~~~~~~i~~~~~~l~~~~~~~v~~~W 74 (104)
+=+.+|..-|.++++.|.+.|.+- +.+...-..... ++. .-|...++.+.+.++.++ |+.|-+-+
T Consensus 40 G~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~~~~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~H~~-Gi~VilD~ 118 (484)
T 2aaa_A 40 GSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHAR-GMYLMVDV 118 (484)
T ss_dssp CCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeCccccCcccccccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHC-CCEEEEEE
Confidence 346788888999988887776642 110000000000 010 112356777788788888 99999999
Q ss_pred ecCCCCCch
Q psy15899 75 CPSHCGIRG 83 (104)
Q Consensus 75 VpgH~g~~g 83 (104)
|+.|++..+
T Consensus 119 V~NH~~~~~ 127 (484)
T 2aaa_A 119 VPDHMGYAG 127 (484)
T ss_dssp CCSBCCBSS
T ss_pred CcCCcCCCC
Confidence 999998643
No 61
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Probab=34.96 E-value=26 Score=27.22 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhhCCCCeEEEEe--ccHHHHHHhcC---CCC------CCh-----------HHHHHHHHHHHHHHhC
Q psy15899 9 AELIAILLCLRSIKNHPAMRFLLVS--DSMGSLSAIAN---PYL------SCP-----------IISQIYSAWCDLKTVG 66 (104)
Q Consensus 9 aEl~Ai~~aL~~~~~~~~~~v~I~t--DS~~~l~~l~~---~~~------~~~-----------~~~~i~~~~~~l~~~~ 66 (104)
+-+.++...|..+++.|.+.|.+.- ++..... -.. ++. ..+ -..++...+.++.++
T Consensus 117 g~~~g~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~-~g~~~~gY~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~H~~- 194 (637)
T 1gjw_A 117 GTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFK-KGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHIL- 194 (637)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEEECCSSC-SSSSCCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHT-
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeCCCeecccccc-cCCCCCccCCCCcCCcCcccCCCcccccchHHHHHHHHHHHHHC-
Confidence 3466778888888888777776431 1110000 000 111 011 157788888888888
Q ss_pred CcceEEEeecCCCCCch
Q psy15899 67 QYYVKLMWCPSHCGIRG 83 (104)
Q Consensus 67 ~~~v~~~WVpgH~g~~g 83 (104)
|+.|-+-+|+.|++..+
T Consensus 195 Gi~VilD~V~nH~~~~~ 211 (637)
T 1gjw_A 195 GIRVILDFIPRTAARDS 211 (637)
T ss_dssp TCEEEEEECTTEEETTC
T ss_pred CCEEEEEECcCCCcCcc
Confidence 99999999999987644
No 62
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=33.69 E-value=82 Score=20.21 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=13.1
Q ss_pred HHHHHhCCcceEEEeecCC
Q psy15899 60 CDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 60 ~~l~~~~~~~v~~~WVpgH 78 (104)
.++..+++..|.+.|.|+-
T Consensus 24 ~~l~~~~~~~v~v~~~p~~ 42 (208)
T 3kzq_A 24 EKLKQQLPGVIQFEYVVGG 42 (208)
T ss_dssp HHHHHHSCTTSEEEEEECC
T ss_pred HHHHHhCCCCceEEEEecc
Confidence 3455554567999999963
No 63
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.62 E-value=1.1e+02 Score=21.29 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhC----CCCeEEEEeccH
Q psy15899 12 IAILLCLRSIKNH----PAMRFLLVSDSM 36 (104)
Q Consensus 12 ~Ai~~aL~~~~~~----~~~~v~I~tDS~ 36 (104)
.||..|+..+... ...+|+||+||.
T Consensus 89 ~gL~~A~~aLk~~~~k~~~~rIIlf~ds~ 117 (268)
T 4b4t_W 89 TALQIAQLTLKHRQNKVQHQRIVAFVCSP 117 (268)
T ss_dssp HHHHHHHHHHHTCSCTTSEEEEEEEECSC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEEECCC
Confidence 4566666666532 456899999874
No 64
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=33.35 E-value=38 Score=25.13 Aligned_cols=69 Identities=13% Similarity=-0.007 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHh--------hhCCCCeEEEE--eccHHHHHHhcCCCCC------C---hHHHHHHHHHHHHHHhCCcc
Q psy15899 9 AELIAILLCLRSI--------KNHPAMRFLLV--SDSMGSLSAIANPYLS------C---PIISQIYSAWCDLKTVGQYY 69 (104)
Q Consensus 9 aEl~Ai~~aL~~~--------~~~~~~~v~I~--tDS~~~l~~l~~~~~~------~---~~~~~i~~~~~~l~~~~~~~ 69 (104)
+-+.+|..-|.++ ++.|.+.|.+- ..|.. ..++.. . |...++.+++.++.++ |+.
T Consensus 24 Gdl~gi~~~LdyL~~~~~~~~~~LGv~~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~d~~~Lv~~aH~~-Gi~ 97 (488)
T 1wza_A 24 GDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPS-----YHGYDVTDYYKINPDYGTLEDFHKLVEAAHQR-GIK 97 (488)
T ss_dssp CCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSS-----SSCCSCSEEEEECGGGCCHHHHHHHHHHHHHT-TCE
T ss_pred CCHHHHHHhhhhhhccccchhhhcCccEEEECCcccCCC-----CCCcCcccccccCcccCCHHHHHHHHHHHHHC-CCE
Confidence 3467888889999 88888877642 12211 011111 1 2456788888888888 999
Q ss_pred eEEEeecCCCCCch
Q psy15899 70 VKLMWCPSHCGIRG 83 (104)
Q Consensus 70 v~~~WVpgH~g~~g 83 (104)
|-+-+|+.|++...
T Consensus 98 VilD~V~NH~s~~~ 111 (488)
T 1wza_A 98 VIIDLPINHTSERH 111 (488)
T ss_dssp EEEECCCSBCCTTS
T ss_pred EEEEeccccccCcc
Confidence 99999999998754
No 65
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}
Probab=33.30 E-value=48 Score=25.93 Aligned_cols=30 Identities=17% Similarity=0.040 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeecCCCCCc
Q psy15899 52 ISQIYSAWCDLKTVGQYYVKLMWCPSHCGIR 82 (104)
Q Consensus 52 ~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~~ 82 (104)
..++...+.++.++ |+.|-+-+|+.|++..
T Consensus 241 ~~d~~~lv~~~H~~-Gi~VilD~V~NH~~~~ 270 (657)
T 2wsk_A 241 LDEFRDAIKALHKA-GIEVILDIVLNHSAEL 270 (657)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEECCSCCTTC
T ss_pred HHHHHHHHHHHHHC-CCEEEEEEeecccccc
Confidence 47788888888888 9999999999999753
No 66
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Probab=32.84 E-value=15 Score=21.64 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=10.7
Q ss_pred chhHHHHHHHccc
Q psy15899 82 RGNEAVDQAAKDP 94 (104)
Q Consensus 82 ~gNe~AD~lAk~a 94 (104)
.|++.||++|++-
T Consensus 21 ~g~~~A~~iA~k~ 33 (90)
T 1kn6_A 21 GGQEAASAIAEEL 33 (90)
T ss_dssp STHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHc
Confidence 4789999999863
No 67
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Probab=32.57 E-value=45 Score=26.45 Aligned_cols=29 Identities=10% Similarity=-0.018 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeecCCCCC
Q psy15899 52 ISQIYSAWCDLKTVGQYYVKLMWCPSHCGI 81 (104)
Q Consensus 52 ~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~ 81 (104)
..++...+.++.++ |+.|-+-+|+.|++.
T Consensus 266 ~~dfk~lv~~~H~~-Gi~VilDvV~NH~~~ 294 (718)
T 2vr5_A 266 VLSFKKMVNELHNA-GIEVIIDVVYNHTAE 294 (718)
T ss_dssp HHHHHHHHHHHHTT-TCEEEEEECCSCCSS
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeccCcccC
Confidence 46788888888888 999999999999974
No 68
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=31.96 E-value=93 Score=19.68 Aligned_cols=32 Identities=16% Similarity=-0.155 Sum_probs=23.4
Q ss_pred CcchhhHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy15899 2 FHCSNGIAELIAILLCLRSIKNHPAMRFLLVSD 34 (104)
Q Consensus 2 ~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tD 34 (104)
+..|+|.|.+.| ..+.+.+.+.+.+.+.|+.-
T Consensus 53 ~ksTpyAAq~aa-~~~a~~a~e~Gi~~v~V~vr 84 (137)
T 3u5c_O 53 DESSPYAAMLAA-QDVAAKCKEVGITAVHVKIR 84 (137)
T ss_dssp TTTCHHHHHHHH-HHHHHHHHHHTCCEEECEEE
T ss_pred ccCCHHHHHHHH-HHHHHHHHHcCCeEEEEEEe
Confidence 357888887766 55666677778898888763
No 69
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=31.93 E-value=63 Score=20.98 Aligned_cols=32 Identities=9% Similarity=-0.095 Sum_probs=21.2
Q ss_pred HHHHHHHhCCc-ceEEEeecCCCCCchhHHHHHHHc
Q psy15899 58 AWCDLKTVGQY-YVKLMWCPSHCGIRGNEAVDQAAK 92 (104)
Q Consensus 58 ~~~~l~~~~~~-~v~~~WVpgH~g~~gNe~AD~lAk 92 (104)
....|.+. |. .+.+.||||=--+|. .|.+||+
T Consensus 39 A~~~l~~~-G~~~i~v~~VPGafEiP~--aak~la~ 71 (160)
T 2c92_A 39 ARKVAAGC-GLDDPTVVRVLGAIEIPV--VAQELAR 71 (160)
T ss_dssp HHHHHHHT-TCSCCEEEEESSGGGHHH--HHHHHHT
T ss_pred HHHHHHHc-CCCceEEEECCcHHHHHH--HHHHHHh
Confidence 33455554 66 899999999665554 4566664
No 70
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=30.68 E-value=49 Score=24.27 Aligned_cols=70 Identities=14% Similarity=-0.021 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHHhcCCCCCC---hHHHHHHHHHHHHHHhCCcceEEEeecCCCC
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLV--SDSMGSLSAIANPYLSC---PIISQIYSAWCDLKTVGQYYVKLMWCPSHCG 80 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~--tDS~~~l~~l~~~~~~~---~~~~~i~~~~~~l~~~~~~~v~~~WVpgH~g 80 (104)
=+.+|..-|.++.+.|.+.|.+- .+|...=..+.....-. |...++..++.++.++ |..|-+-+|+.|++
T Consensus 34 dl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~~y~~~dy~~idp~~Gt~~d~~~lv~~ah~~-Gi~vilD~V~NH~s 108 (424)
T 2dh2_A 34 NLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKEDFDSLLQSAKKK-SIRVILDLTPNYRG 108 (424)
T ss_dssp SHHHHHTTHHHHHHTTCSEEEECCCEEECTTCSTTEEEEEECGGGCCHHHHHHHHHHHHHT-TCEEEEECCTTTTS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHC-CCEEEEEECCCcCC
Confidence 36788888899988887777653 11110000011111111 2456777777788888 99999999999998
No 71
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.22 E-value=83 Score=19.90 Aligned_cols=32 Identities=13% Similarity=-0.150 Sum_probs=22.9
Q ss_pred CcchhhHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy15899 2 FHCSNGIAELIAILLCLRSIKNHPAMRFLLVSD 34 (104)
Q Consensus 2 ~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~tD 34 (104)
+..|+|.|.+.| ..+.+.+.+.+.+.|.|+.-
T Consensus 53 ~ksTp~AA~~aa-~~~~~~a~e~Gi~~v~V~vk 84 (137)
T 3j20_M 53 DEPSPYAAMLAA-RRAAEEALEKGIVGVHIRVR 84 (137)
T ss_dssp TSSSHHHHHHHH-HHHHHHHHHHTEEEEEEEEE
T ss_pred ccCCHHHHHHHH-HHHHHHHHHcCCeEEEEEEE
Confidence 346788887776 55666677778888888754
No 72
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=29.38 E-value=54 Score=25.88 Aligned_cols=29 Identities=10% Similarity=-0.010 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeecCCCCC
Q psy15899 52 ISQIYSAWCDLKTVGQYYVKLMWCPSHCGI 81 (104)
Q Consensus 52 ~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~ 81 (104)
..++...+.++.++ |+.|-+-+|+.|++.
T Consensus 254 ~~efk~lV~~~H~~-Gi~VilDvV~NH~~~ 282 (714)
T 2ya0_A 254 IAEFKNLINEIHKR-GMGAILDVVYNHTAK 282 (714)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEECTTBCSC
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeccCcccC
Confidence 47788888888888 999999999999985
No 73
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A*
Probab=29.29 E-value=28 Score=27.54 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEEe--ccHHHHHH--hcCCCC---CChHHHHHHHHHHHHHHhCCcceEEEeecCCCCCc
Q psy15899 10 ELIAILLCLRSIKNHPAMRFLLVS--DSMGSLSA--IANPYL---SCPIISQIYSAWCDLKTVGQYYVKLMWCPSHCGIR 82 (104)
Q Consensus 10 El~Ai~~aL~~~~~~~~~~v~I~t--DS~~~l~~--l~~~~~---~~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~~ 82 (104)
-+.+|..-|.++.+.|...|.+-- .|..- .. +..... .-|-..++.+++.++.++ |+.|-+-.|+.|++..
T Consensus 58 ~~~g~~~~l~yl~~lGv~~i~l~Pi~~~~~~-~gY~~~dy~~i~~~~Gt~~d~~~lv~~~h~~-gi~vi~D~V~NH~~~~ 135 (669)
T 3k8k_A 58 DLNGVTQKLDYLNQLGVKALWLSPIHPCMSY-HGYDVTDYTKVNPQLGTESDFDRLVTEAHNR-GIKIYLDYVMNHTGTA 135 (669)
T ss_dssp CHHHHHTTHHHHHTTTCSEEEECCCSSBSST-TCCSBSCTTSCCTTTCCHHHHHHHHHHHHHT-TCEEEEEECCSEEETT
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccCCCC-CCCCcccccccccccCCHHHHHHHHHHHHHc-CCEEEEEECcccCCCc
Confidence 467777888888888887776532 11100 00 000111 112456777777788887 9999999999998854
No 74
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Probab=28.69 E-value=33 Score=27.63 Aligned_cols=72 Identities=11% Similarity=-0.020 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEe--ccHHHHHHhcC-CC---------CCChHHHHHHHHHHHHHHhCCcceEEEeecCC
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLVS--DSMGSLSAIAN-PY---------LSCPIISQIYSAWCDLKTVGQYYVKLMWCPSH 78 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~t--DS~~~l~~l~~-~~---------~~~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH 78 (104)
+.++..-|.++.+.|.+.|.+-- .+.. . .. ++ +.-|-..++...+.++.++ |+.|-+-.||-|
T Consensus 16 f~gi~~~LdYLk~LGVtaIwLsPi~~~~~---g-s~hGYdv~Dy~~Idp~lGt~edfk~LV~aaH~~-GIkVIlDvV~NH 90 (720)
T 1iv8_A 16 FGDVIDNLWYFXDLGVSHLYLSPVLMASP---G-SNHGYDVIDHSRINDELGGEKEYRRLIETAHTI-GLGIIQDIVPNH 90 (720)
T ss_dssp HHHHHHTHHHHHHHTCCEEEECCCEEECT---T-CSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHT-TCEEEEEECCSE
T ss_pred HHHHHHHHHHHHhCCCCEEEECCcccCCC---C-CCCCCCCccCCCcCccCCCHHHHHHHHHHHHHC-CCEEEEEecccc
Confidence 45566677787777777765421 1100 0 11 11 1123456777788888888 999999999999
Q ss_pred CCC-chhHHH
Q psy15899 79 CGI-RGNEAV 87 (104)
Q Consensus 79 ~g~-~gNe~A 87 (104)
++. .+|..-
T Consensus 91 ta~~~~~~wf 100 (720)
T 1iv8_A 91 MAVNSLNWRL 100 (720)
T ss_dssp EECCTTCHHH
T ss_pred ccCccccHHH
Confidence 983 666654
No 75
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=28.16 E-value=21 Score=28.01 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=45.9
Q ss_pred HHHHHHHHHHH--HhhhCCCCeEEEEe--ccHH-HH---HHhcC--CC---------CCChHHHHHHHHHHHHHHhCCcc
Q psy15899 9 AELIAILLCLR--SIKNHPAMRFLLVS--DSMG-SL---SAIAN--PY---------LSCPIISQIYSAWCDLKTVGQYY 69 (104)
Q Consensus 9 aEl~Ai~~aL~--~~~~~~~~~v~I~t--DS~~-~l---~~l~~--~~---------~~~~~~~~i~~~~~~l~~~~~~~ 69 (104)
+=+.+|..-|. ++.+.|.+-|.+-- ++.. .. ..-.. ++ +.-|-..++.+++.++.++ |++
T Consensus 49 Gdl~gi~~kLd~~yLk~LGv~aIwL~Pi~~~~~~~~~~~~g~~~~~GY~~~Dy~~idp~~Gt~~df~~Lv~~aH~~-GIk 127 (680)
T 1cyg_A 49 GDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAK-GIK 127 (680)
T ss_dssp CCHHHHHHHHHTSTTTTTTCCEEEECCCEEECCCCCSSSSCCCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHT-TCE
T ss_pred cCHHHHHhhcCHHHHHhCCCCEEEeCccccCccccccccCCCCCCCCcCchhccccCcccCCHHHHHHHHHHHHHC-CCE
Confidence 34788999999 99888877776432 1100 00 00000 11 0112457788888888888 999
Q ss_pred eEEEeecCCCCC
Q psy15899 70 VKLMWCPSHCGI 81 (104)
Q Consensus 70 v~~~WVpgH~g~ 81 (104)
|-+-.|+-|++.
T Consensus 128 VilD~V~NHts~ 139 (680)
T 1cyg_A 128 VIIDFAPNHTSP 139 (680)
T ss_dssp EEEEECTTEEEE
T ss_pred EEEEeCCCCCCc
Confidence 999999999864
No 76
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=28.04 E-value=64 Score=25.71 Aligned_cols=29 Identities=7% Similarity=-0.048 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeecCCCCC
Q psy15899 52 ISQIYSAWCDLKTVGQYYVKLMWCPSHCGI 81 (104)
Q Consensus 52 ~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~ 81 (104)
..++...+.++.++ |+.|-+-+|+.|++.
T Consensus 272 ~~efk~lV~~~H~~-Gi~VilDvV~NH~~~ 300 (750)
T 1bf2_A 272 TAEFQAMVQAFHNA-GIKVYMDVVYNHTAE 300 (750)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEECCSSCTT
T ss_pred HHHHHHHHHHHHHC-CCEEEEEEecccccC
Confidence 57788888888888 999999999999874
No 77
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=27.34 E-value=69 Score=20.62 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy15899 7 GIAELIAILLCLRSIKNHPAMRFLLVSD 34 (104)
Q Consensus 7 ~~aEl~Ai~~aL~~~~~~~~~~v~I~tD 34 (104)
..||+.||..|-+..........++|+-
T Consensus 60 ~HAE~~AI~~a~~~~~~~~l~g~tlYvT 87 (164)
T 1wkq_A 60 AHAEVTAIRKACKVLGAYQLDDCILYTS 87 (164)
T ss_dssp CCHHHHHHHHHHHHHTSSSCTTEEEEEE
T ss_pred cCHHHHHHHHHHHHcCCCCcCceEEEEe
Confidence 4699999999987654444566677765
No 78
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=27.08 E-value=73 Score=20.24 Aligned_cols=29 Identities=21% Similarity=0.069 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy15899 6 NGIAELIAILLCLRSIKNHPAMRFLLVSD 34 (104)
Q Consensus 6 ~~~aEl~Ai~~aL~~~~~~~~~~v~I~tD 34 (104)
...||..||..|.+..........++|+-
T Consensus 54 ~~HAE~~Ai~~a~~~~~~~~l~~~tlyvT 82 (159)
T 2b3j_A 54 TAHAEHIAIERAAKVLGSWRLEGCTLYVT 82 (159)
T ss_dssp TCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred ccCHHHHHHHHHHHHcCCCCcceeEEEEC
Confidence 34799999999987654445566777764
No 79
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=26.64 E-value=53 Score=24.12 Aligned_cols=71 Identities=3% Similarity=-0.226 Sum_probs=44.1
Q ss_pred HHHHHHH-HHHhhhCCCCeEEEE----ecc------HHHHHHhcCCCCCChHHHHHHHHHHHHHHhCCcceEEEeecCCC
Q psy15899 11 LIAILLC-LRSIKNHPAMRFLLV----SDS------MGSLSAIANPYLSCPIISQIYSAWCDLKTVGQYYVKLMWCPSHC 79 (104)
Q Consensus 11 l~Ai~~a-L~~~~~~~~~~v~I~----tDS------~~~l~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~v~~~WVpgH~ 79 (104)
+.+|..- |.++.+.|.+.|.+- +.+ -|-..- -+..+.-|-..++.+++.++.++ |+.|-+-.|+-|+
T Consensus 13 ~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~-y~idp~~Gt~~dfk~Lv~~aH~~-Gi~VilD~V~NH~ 90 (448)
T 1g94_A 13 WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVS-YELQSRGGNRAQFIDMVNRCSAA-GVDIYVDTLINHM 90 (448)
T ss_dssp HHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSC-SCSCBTTBCHHHHHHHHHHHHHT-TCEEEEEEECSEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCcccccccc-cccCCCCCCHHHHHHHHHHHHHC-CCEEEEEEeeccc
Confidence 6677765 578877777766653 111 000000 00001123456778888888888 9999999999998
Q ss_pred CCch
Q psy15899 80 GIRG 83 (104)
Q Consensus 80 g~~g 83 (104)
+...
T Consensus 91 ~~~~ 94 (448)
T 1g94_A 91 AAGS 94 (448)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8754
No 80
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=26.62 E-value=73 Score=20.80 Aligned_cols=29 Identities=21% Similarity=-0.005 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy15899 6 NGIAELIAILLCLRSIKNHPAMRFLLVSD 34 (104)
Q Consensus 6 ~~~aEl~Ai~~aL~~~~~~~~~~v~I~tD 34 (104)
...||+.||..|-+..........++|+-
T Consensus 63 t~HAE~~AI~~a~~~~~~~~l~g~tlYvT 91 (179)
T 2nx8_A 63 IMHAEMMAINEANAHEGNWRLLDTTLFVT 91 (179)
T ss_dssp TCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred ccCHHHHHHHHHHHHcCCCcccceEEEEC
Confidence 35799999999987654333445555554
No 81
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=26.56 E-value=53 Score=20.85 Aligned_cols=29 Identities=21% Similarity=0.037 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHhhhCCCCeEEEEeccH
Q psy15899 7 GIAELIAILLCLRSIKNHPAMRFLLVSDSM 36 (104)
Q Consensus 7 ~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~ 36 (104)
..||..||..|... -......+.|++|..
T Consensus 64 ~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 64 VCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp BCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred cCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 46999999999876 334578889999853
No 82
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A
Probab=26.46 E-value=47 Score=25.74 Aligned_cols=70 Identities=7% Similarity=-0.183 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEe----cc-----HHHHHHhcC---------CCCCChHHHHHHHHHHHHHHhCCcceEE
Q psy15899 11 LIAILLCLRSIKNHPAMRFLLVS----DS-----MGSLSAIAN---------PYLSCPIISQIYSAWCDLKTVGQYYVKL 72 (104)
Q Consensus 11 l~Ai~~aL~~~~~~~~~~v~I~t----DS-----~~~l~~l~~---------~~~~~~~~~~i~~~~~~l~~~~~~~v~~ 72 (104)
+.+|..-|.++.+.|.+.|.+-- .| -|...-... ..+.-|...++.+++.++.++ |++|-+
T Consensus 149 ~~gi~~~LdyLk~LGvtaIwL~Pi~~~~s~~~~~GYd~~dy~~l~e~~q~g~idp~~Gt~~dfk~Lv~~aH~~-GI~Vil 227 (599)
T 3bc9_A 149 WNLLAERAPELAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNN-DIKVYF 227 (599)
T ss_dssp HHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCChhhcccccccccccccCCCCCCHHHHHHHHHHHHHC-CCEEEE
Confidence 77888888888887777665431 11 111100000 001123456777788888888 999999
Q ss_pred EeecCCCCC
Q psy15899 73 MWCPSHCGI 81 (104)
Q Consensus 73 ~WVpgH~g~ 81 (104)
-+|+-|++.
T Consensus 228 D~V~NH~~~ 236 (599)
T 3bc9_A 228 DAVLNHRMG 236 (599)
T ss_dssp EECCSEECS
T ss_pred EECcCCCCC
Confidence 999999863
No 83
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=26.36 E-value=65 Score=26.81 Aligned_cols=29 Identities=10% Similarity=-0.010 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeecCCCCC
Q psy15899 52 ISQIYSAWCDLKTVGQYYVKLMWCPSHCGI 81 (104)
Q Consensus 52 ~~~i~~~~~~l~~~~~~~v~~~WVpgH~g~ 81 (104)
..++...+.++.++ |+.|-+-+|+.|++.
T Consensus 561 ~~efk~lV~~~H~~-GI~VIlDvV~NHt~~ 589 (1014)
T 2ya1_A 561 IAEFKNLINEIHKR-GMGAILDVVYNHTAK 589 (1014)
T ss_dssp HHHHHHHHHHHHTT-TCEEEEEECTTCCSC
T ss_pred HHHHHHHHHHHHHc-CCEEEEEEecccccc
Confidence 46788888888888 999999999999986
No 84
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=25.96 E-value=1e+02 Score=19.84 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=21.6
Q ss_pred HHHHHHHhCC----cceEEEeecCCCCCchhHHHHHHHcc
Q psy15899 58 AWCDLKTVGQ----YYVKLMWCPSHCGIRGNEAVDQAAKD 93 (104)
Q Consensus 58 ~~~~l~~~~~----~~v~~~WVpgH~g~~gNe~AD~lAk~ 93 (104)
....|.+. | ..+.+.||||=--+| -.|.+||+.
T Consensus 34 A~~~l~~~-G~v~~~~i~v~~VPGafEiP--~aa~~la~~ 70 (156)
T 3nq4_A 34 AVDALTRI-GQVKDDNITVVWVPGAYELP--LATEALAKS 70 (156)
T ss_dssp HHHHHHHT-TCCCTTSEEEEEESSTTTHH--HHHHHHHHH
T ss_pred HHHHHHHc-CCCcccceEEEEcCcHHHHH--HHHHHHHhc
Confidence 33455544 6 379999999976666 456666654
No 85
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=25.35 E-value=68 Score=19.95 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHhhhCCCCeEEEEeccH
Q psy15899 6 NGIAELIAILLCLRSIKNHPAMRFLLVSDSM 36 (104)
Q Consensus 6 ~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS~ 36 (104)
...||..||..|... -......+.+++|..
T Consensus 51 t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 51 CNCAEATALFKAVSE-GDTEFQMLAVAADTP 80 (136)
T ss_dssp CBCHHHHHHHHHHHH-TCCCEEEEEEEESCS
T ss_pred ccCHHHHHHHHHHHC-CCCCeEEEEEEeCCC
Confidence 357999999999876 334677889998753
No 86
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=25.14 E-value=73 Score=23.56 Aligned_cols=68 Identities=7% Similarity=-0.196 Sum_probs=43.4
Q ss_pred HHHHHHH-HHHhhhCCCCeEEEE----ecc--------HHHHHHhcCCCC---CChHHHHHHHHHHHHHHhCCcceEEEe
Q psy15899 11 LIAILLC-LRSIKNHPAMRFLLV----SDS--------MGSLSAIANPYL---SCPIISQIYSAWCDLKTVGQYYVKLMW 74 (104)
Q Consensus 11 l~Ai~~a-L~~~~~~~~~~v~I~----tDS--------~~~l~~l~~~~~---~~~~~~~i~~~~~~l~~~~~~~v~~~W 74 (104)
+.+|..- |.++.+.|.+.|.+- +.+ .|.. .. +. .-|...++.+++.++.++ |+.|-+-.
T Consensus 21 ~~gi~~~~ldyL~~LGv~~I~l~Pi~~~~~~~~~~~~~gYd~---~d-y~idp~~Gt~~d~~~lv~~~h~~-Gi~VilD~ 95 (471)
T 1jae_A 21 WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQP---VS-YIINTRSGDESAFTDMTRRCNDA-GVRIYVDA 95 (471)
T ss_dssp HHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSB---CC-SCSEETTEEHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCccccccCCCCCCccccccc---cc-ccccCCCCCHHHHHHHHHHHHHC-CCEEEEEE
Confidence 6677776 588887766665543 111 0100 00 11 123456778888888888 99999999
Q ss_pred ecCCCCCch
Q psy15899 75 CPSHCGIRG 83 (104)
Q Consensus 75 VpgH~g~~g 83 (104)
|+-|++...
T Consensus 96 V~NH~~~~~ 104 (471)
T 1jae_A 96 VINHMTGMN 104 (471)
T ss_dssp CCSBCCSSC
T ss_pred ecccccCCC
Confidence 999998763
No 87
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=25.05 E-value=1e+02 Score=19.93 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=19.8
Q ss_pred HHHHHHHhCC--cceEEEeecCCCCCchhHHHHHHHcc
Q psy15899 58 AWCDLKTVGQ--YYVKLMWCPSHCGIRGNEAVDQAAKD 93 (104)
Q Consensus 58 ~~~~l~~~~~--~~v~~~WVpgH~g~~gNe~AD~lAk~ 93 (104)
....|.+. | ..+.+.||||=--+| -.|.+||+.
T Consensus 35 a~~~l~~~-Gv~~~i~v~~VPGafEiP--~aa~~la~~ 69 (156)
T 1c2y_A 35 ALDTFKKY-SVNEDIDVVWVPGAYELG--VTAQALGKS 69 (156)
T ss_dssp HHHHHHHT-TCCSCCEEEEESSHHHHH--HHHHHHHHT
T ss_pred HHHHHHHc-CCCCceEEEECCcHHHHH--HHHHHHHhc
Confidence 33455554 6 478999999854444 244566654
No 88
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=23.91 E-value=1.2e+02 Score=19.43 Aligned_cols=33 Identities=18% Similarity=0.086 Sum_probs=20.6
Q ss_pred HHHHHHHhCC---cceEEEeecCCCCCchhHHHHHHHcc
Q psy15899 58 AWCDLKTVGQ---YYVKLMWCPSHCGIRGNEAVDQAAKD 93 (104)
Q Consensus 58 ~~~~l~~~~~---~~v~~~WVpgH~g~~gNe~AD~lAk~ 93 (104)
.+..|.+. | .++.+.||||=--+|. .|.+||+.
T Consensus 34 a~~~l~~~-gv~~~~i~v~~VPGafEiP~--aa~~la~~ 69 (154)
T 1hqk_A 34 AIDCIVRH-GGREEDITLVRVPGSWEIPV--AAGELARK 69 (154)
T ss_dssp HHHHHHHT-TCCGGGEEEEEESSGGGHHH--HHHHHHTC
T ss_pred HHHHHHHc-CCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 33455544 5 4789999998655553 45666654
No 89
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=23.72 E-value=1.2e+02 Score=19.42 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=20.2
Q ss_pred HHHHHHhCC---cceEEEeecCCCCCchhHHHHHHHcc
Q psy15899 59 WCDLKTVGQ---YYVKLMWCPSHCGIRGNEAVDQAAKD 93 (104)
Q Consensus 59 ~~~l~~~~~---~~v~~~WVpgH~g~~gNe~AD~lAk~ 93 (104)
...|.+. | .++.+.||||=--+|. .|.+||+.
T Consensus 35 ~~~l~~~-gv~~~~i~v~~VPGafEiP~--aa~~la~~ 69 (154)
T 1rvv_A 35 EDALLRH-GVDTNDIDVAWVPGAFEIPF--AAKKMAET 69 (154)
T ss_dssp HHHHHHT-TCCGGGEEEEEESSGGGHHH--HHHHHHHT
T ss_pred HHHHHHc-CCCccceEEEECCcHHHHHH--HHHHHHhc
Confidence 3455544 5 4689999998655553 45666654
No 90
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=23.33 E-value=63 Score=23.82 Aligned_cols=40 Identities=3% Similarity=-0.229 Sum_probs=26.5
Q ss_pred hhHHHHHH-HHHHHHHhhhC----CCCeEEEEeccHHHHHHhcCC
Q psy15899 6 NGIAELIA-ILLCLRSIKNH----PAMRFLLVSDSMGSLSAIANP 45 (104)
Q Consensus 6 ~~~aEl~A-i~~aL~~~~~~----~~~~v~I~tDS~~~l~~l~~~ 45 (104)
.+.-|++| ++.||+.-... .+..++++||.+......+.|
T Consensus 362 ~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~~~~~~~~ 406 (428)
T 2zd1_B 362 TNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYW 406 (428)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHHHHHHhcc
Confidence 34556666 99999875422 346778899998765554443
No 91
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=23.29 E-value=78 Score=19.64 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy15899 7 GIAELIAILLCLRSIKNHPAMRFLLVSD 34 (104)
Q Consensus 7 ~~aEl~Ai~~aL~~~~~~~~~~v~I~tD 34 (104)
..||..||..|.+..........++|+-
T Consensus 52 ~HAE~~Ai~~a~~~~~~~~~~~~tly~T 79 (144)
T 2a8n_A 52 AHAEIAVIRMACEALGQERLPGADLYVT 79 (144)
T ss_dssp CCHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCccCCeEEEEC
Confidence 4699999999987654334556666653
No 92
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=23.26 E-value=92 Score=20.16 Aligned_cols=28 Identities=21% Similarity=0.128 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy15899 7 GIAELIAILLCLRSIKNHPAMRFLLVSD 34 (104)
Q Consensus 7 ~~aEl~Ai~~aL~~~~~~~~~~v~I~tD 34 (104)
..||..||..|.+..........++|+-
T Consensus 71 ~HAE~~AI~~a~~~~g~~~l~~~tlYvT 98 (171)
T 1wwr_A 71 AHAEMLAIKEACRRLNTKYLEGCELYVT 98 (171)
T ss_dssp CCHHHHHHHHHHHHHTCSCCTTEEEEES
T ss_pred cCHHHHHHHHHHHHcCCCccCceEEEEC
Confidence 4699999999987654445667777764
No 93
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=23.25 E-value=18 Score=25.13 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=4.8
Q ss_pred EEeecCCCCCchhHH
Q psy15899 72 LMWCPSHCGIRGNEA 86 (104)
Q Consensus 72 ~~WVpgH~g~~gNe~ 86 (104)
++|.|||-.-.-.+.
T Consensus 3 i~w~PGhm~ka~~~~ 17 (282)
T 1puj_A 3 IQWFPGHMAKARREV 17 (282)
T ss_dssp ------CTTHHHHHH
T ss_pred CcCCchHHHHHHHHH
Confidence 789999976444433
No 94
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=22.54 E-value=71 Score=19.69 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHhhhCCCCeEEEEecc
Q psy15899 6 NGIAELIAILLCLRSIKNHPAMRFLLVSDS 35 (104)
Q Consensus 6 ~~~aEl~Ai~~aL~~~~~~~~~~v~I~tDS 35 (104)
...||..||..|... -......+.+++|.
T Consensus 52 t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 52 GPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp CCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred ccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 457999999999875 22356788889874
No 95
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=22.38 E-value=50 Score=25.84 Aligned_cols=73 Identities=14% Similarity=0.091 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhhCCCCeEEEEe--ccHHH-HH-HhcC--CCC---------CChHHHHHHHHHHHHHHhCCcceEEE
Q psy15899 9 AELIAILLCLRSIKNHPAMRFLLVS--DSMGS-LS-AIAN--PYL---------SCPIISQIYSAWCDLKTVGQYYVKLM 73 (104)
Q Consensus 9 aEl~Ai~~aL~~~~~~~~~~v~I~t--DS~~~-l~-~l~~--~~~---------~~~~~~~i~~~~~~l~~~~~~~v~~~ 73 (104)
+=+.+|..-|.++.+.|.+.|.|-- ++... .. .-.. ++. .-|-..++.+++.++.++ |++|-+-
T Consensus 49 Gdl~gi~~kLdyLk~LGv~aIwL~Pi~~~~~~~~~~g~~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~-GikVilD 127 (686)
T 1qho_A 49 GDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQN-GIKVIVD 127 (686)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEEECSSCSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHT-TCEEEEE
T ss_pred CCHHHHHHhhHHHHhcCCCEEEECccccCCcccccCCCCCcCCcCcccccccCcccCCHHHHHHHHHHHHHC-CCEEEEE
Confidence 3478899999999888877776421 11000 00 0000 110 112456778888888888 9999999
Q ss_pred eecCCCCCc
Q psy15899 74 WCPSHCGIR 82 (104)
Q Consensus 74 WVpgH~g~~ 82 (104)
+|+-|++..
T Consensus 128 ~V~NHts~~ 136 (686)
T 1qho_A 128 FVPNHSTPF 136 (686)
T ss_dssp ECTTEEEEE
T ss_pred ecccccccc
Confidence 999998753
No 96
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=22.01 E-value=63 Score=19.73 Aligned_cols=17 Identities=18% Similarity=0.516 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHhhh
Q psy15899 7 GIAELIAILLCLRSIKN 23 (104)
Q Consensus 7 ~~aEl~Ai~~aL~~~~~ 23 (104)
+-||+.+|+.+|+.+.+
T Consensus 30 ~LAelYSII~tle~LEk 46 (109)
T 2f6m_B 30 TLSEIYSIVITLDHVEK 46 (109)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 46999999999999864
No 97
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=21.54 E-value=1.6e+02 Score=18.61 Aligned_cols=29 Identities=10% Similarity=-0.005 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHHHHhCCcceEEEeecC
Q psy15899 49 CPIISQIYSAWCDLKTVGQYYVKLMWCPS 77 (104)
Q Consensus 49 ~~~~~~i~~~~~~l~~~~~~~v~~~WVpg 77 (104)
.|.-..+...+.++.++++.+|.|..+|-
T Consensus 36 Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~ 64 (193)
T 3hz8_A 36 CPHCAHLEPVLSKHAKSFKDDMYLRTEHV 64 (193)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 34444444555566665455799999984
No 98
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=21.16 E-value=66 Score=19.93 Aligned_cols=17 Identities=18% Similarity=0.516 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHhhh
Q psy15899 7 GIAELIAILLCLRSIKN 23 (104)
Q Consensus 7 ~~aEl~Ai~~aL~~~~~ 23 (104)
+-||+.+|+.+|+.+..
T Consensus 39 ~LAeLYSII~tle~LEK 55 (118)
T 2p22_B 39 TLSEIYSIVITLDHVEK 55 (118)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 46999999999999864
No 99
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=21.02 E-value=56 Score=25.59 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=45.8
Q ss_pred HHHHHHHHHHH--HhhhCCCCeEEEEe--ccHHHH---HHh--cC--CC---------CCChHHHHHHHHHHHHHHhCCc
Q psy15899 9 AELIAILLCLR--SIKNHPAMRFLLVS--DSMGSL---SAI--AN--PY---------LSCPIISQIYSAWCDLKTVGQY 68 (104)
Q Consensus 9 aEl~Ai~~aL~--~~~~~~~~~v~I~t--DS~~~l---~~l--~~--~~---------~~~~~~~~i~~~~~~l~~~~~~ 68 (104)
+=+.+|..-|. ++++.|.+.|.+-- ++.... +.. .. ++ ..-|-..++.+++.++.++ |+
T Consensus 52 Gdl~gi~~kLd~~yLk~LGvt~IwL~Pi~~~~~~~~~~~g~~~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~aH~~-GI 130 (686)
T 1d3c_A 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK-NI 130 (686)
T ss_dssp CCHHHHHHHHHTTTTGGGTCCEEEECCCEEECCCCEESSSCEECCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHT-TC
T ss_pred cCHHHHHHhcCHHHHHhcCCCEEEeCCcccCCcccccccCccCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHC-CC
Confidence 34788999999 99888877776431 110000 000 00 11 1112457788888888888 99
Q ss_pred ceEEEeecCCCCC
Q psy15899 69 YVKLMWCPSHCGI 81 (104)
Q Consensus 69 ~v~~~WVpgH~g~ 81 (104)
+|-+-+|+-|++.
T Consensus 131 ~VilD~V~NHts~ 143 (686)
T 1d3c_A 131 KVIIDFAPNHTSP 143 (686)
T ss_dssp EEEEEECTTEEEE
T ss_pred EEEEEeCcCcccc
Confidence 9999999999864
No 100
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=21.00 E-value=1.4e+02 Score=19.53 Aligned_cols=31 Identities=3% Similarity=0.006 Sum_probs=19.6
Q ss_pred HHHHHHhCC---cceEEEeecCCCCCchhHHHHHHHc
Q psy15899 59 WCDLKTVGQ---YYVKLMWCPSHCGIRGNEAVDQAAK 92 (104)
Q Consensus 59 ~~~l~~~~~---~~v~~~WVpgH~g~~gNe~AD~lAk 92 (104)
+..|.+. | .++.+.||||=--+|. .|.+||+
T Consensus 39 ~~~L~~~-Gv~~~~i~v~~VPGafEiP~--aak~la~ 72 (168)
T 1ejb_A 39 IERMASL-GVEENNIIIETVPGSYELPW--GTKRFVD 72 (168)
T ss_dssp HHHHHHT-TCCGGGEEEEECSSGGGHHH--HHHHHHH
T ss_pred HHHHHHc-CCCccceEEEECCcHHHHHH--HHHHHHh
Confidence 3455444 5 4789999998655553 4556665
No 101
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=20.83 E-value=92 Score=20.03 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHhhhCCCCeEEEEe
Q psy15899 7 GIAELIAILLCLRSIKNHPAMRFLLVS 33 (104)
Q Consensus 7 ~~aEl~Ai~~aL~~~~~~~~~~v~I~t 33 (104)
..||..||..|.+..........++|+
T Consensus 57 ~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 57 AHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp CCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred hhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 579999999998765333334445554
No 102
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=20.05 E-value=1.7e+02 Score=18.12 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=22.3
Q ss_pred eEEEEeccHHHHHHhcCCCCCChHHHHHHHHHHHHHHhCCcceEEEeecC
Q psy15899 28 RFLLVSDSMGSLSAIANPYLSCPIISQIYSAWCDLKTVGQYYVKLMWCPS 77 (104)
Q Consensus 28 ~v~I~tDS~~~l~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~v~~~WVpg 77 (104)
.|.+|+|.. .|+-......+.++.++++..|.|+++|=
T Consensus 28 ~i~~f~d~~------------Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~ 65 (193)
T 2rem_A 28 EVVEIFGYT------------CPHCAHFDSKLQAWGARQAKDVRFTLVPA 65 (193)
T ss_dssp EEEEEECTT------------CHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred EEEEEECCC------------ChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence 567777733 33333333444455555456799999883
Done!