RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15899
         (104 letters)



>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 36.8 bits (84), Expect = 9e-05
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 3   HCSNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANPYLSCPIISQIYSAWCDL 62
             +N  AEL A  +           +  ++ DS   +  +A+                  
Sbjct: 41  QTTNQQAELEAFAMA----LTDSGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIE--- 93

Query: 63  KTVGQYYVKLMWCPSHCGIRGNEAVDQAAK 92
           + + +  + + W P+H GI GN+ VD    
Sbjct: 94  EMIKKEAIYVAWVPAHKGIGGNQEVDHLVS 123


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 33.8 bits (76), Expect = 0.001
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 67  QYYVKLMWCPSHCGIRGNEAVDQAAKDPLLSPVIE 101
           Q+ +K  W   H G   NE  D+ A+   ++P +E
Sbjct: 111 QHQIKWEWVKGHAGHPENERADELARAAAMNPTLE 145


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 32.6 bits (73), Expect = 0.003
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 59  WCDLKTVGQYYVKLMWCPSHCGIRGNEAVDQAAK 92
              L  +  + V+  +   H G   NE VD+ A+
Sbjct: 105 EALLLAMAPHRVRFHFVKGHTGHPENERVDREAR 138


>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 204

 Score = 26.0 bits (56), Expect = 0.78
 Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 4/78 (5%)

Query: 5   SNGIAELIAILLCLRSIKNHPAMRFLLVSDSMGSLSAIANPYLSCPIISQIYSAWCDLKT 64
             G+ E  A+ L     +  P+ R +++++        A    S        + W     
Sbjct: 32  RYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWA---- 87

Query: 65  VGQYYVKLMWCPSHCGIR 82
            G  Y +          R
Sbjct: 88  SGVLYWRESSQQIILNGR 105


>d1r8na_ b.42.4.1 (A:) Serine protease inhibitor DrTI {Royal
           poinciana (Delonix regia) [TaxId: 72433]}
          Length = 185

 Score = 24.1 bits (52), Expect = 3.4
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 65  VGQYYVKLMWCPSHCGI 81
           +G    KL++CP     
Sbjct: 129 LGSLAYKLVFCPKSDSG 145


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.441 

Gapped
Lambda     K      H
   0.267   0.0611    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 394,610
Number of extensions: 14751
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 10
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)