BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy159
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 19/220 (8%)
Query: 46 LTSQDVFEIK--NEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETD 103
L S+D E+K N + +N D + + + V + FY + EKI
Sbjct: 3 LGSEDDLEVKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILK 62
Query: 104 NMD--ITFVKM---ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEE------EVLQ 152
+ D I K+ + A ++ V+ P + + Y G ++EE EV Q
Sbjct: 63 DKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQ 122
Query: 153 WLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYG- 211
T E + ++T+ + +V + + V FY C C ++ EK E
Sbjct: 123 PDWTPPPEVTL-VLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSP 181
Query: 212 -IHMVKIQ---DPQLAKRYSIKTFPALVYFRNGNPLIFEG 247
I + K+ + LAKR+ + +P L FR G P + G
Sbjct: 182 PIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNG 221
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 160 EDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYG--IHMVKI 217
ED + ++ + + +YL V FY C C + K + G I + K+
Sbjct: 6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV 65
Query: 218 ---QDPQLAKRYSIKTFPALVYFRNGN 241
++ LA++Y ++ +P + +FRNG+
Sbjct: 66 DATEESDLAQQYGVRGYPTIKFFRNGD 92
>pdb|4EUY|A Chain A, Crystal Structure Of Thioredoxin-Like Protein Bce_0499
From Bacillus Cereus Atcc 10987
Length = 105
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 171 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQ-LAKRYSIK 229
L T +EE Q + ++ NC +CD L + V + + + +QD Q +A RY++
Sbjct: 11 LATYIEEQQLVLLFIKTENCGVCDVXLRKVNYVLENYNYVEKIEILLQDXQEIAGRYAVF 70
Query: 230 TFPALVYFRNGNPLIFEG 247
T P ++ F NG ++ E
Sbjct: 71 TGPTVLLFYNGKEILRES 88
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 165 LITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVD-DECDIYGIHMVKIQDPQ-L 222
L T + + +E + V F + NC++C ++ LE++ + + +G + V +++ + L
Sbjct: 9 LDTNTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTL 68
Query: 223 AKRYSIKTFPALVYFRNG 240
+R+S+K P ++YF++G
Sbjct: 69 FQRFSLKGVPQILYFKDG 86
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 166 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYG--IHMVKI---QDP 220
+T+ + +V + V FY C C ++ EK E I + K+ +
Sbjct: 12 LTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQT 71
Query: 221 QLAKRYSIKTFPALVYFRNGNPLIFEG 247
LAKR+ + +P L FR G P + G
Sbjct: 72 DLAKRFDVSGYPTLKIFRKGRPFDYNG 98
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYG-IHMVKI---QDPQLAKRYSIKTFPALVYFR 238
V F+ C C + LE++ D G + +VK+ + P LA RY +++ P LV FR
Sbjct: 55 VDFFAPWCGPCRLVSPILEELAR--DHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFR 112
Query: 239 NGNPL 243
G P+
Sbjct: 113 RGAPV 117
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 181 LAVYFYKLNCNICDQILEGLEKVDD--ECDIYGIHMVKI-QDPQLAKRYSIKTFPALVYF 237
+ + F+ C C I EK+ D D G + V + + Q+A+ I+ P V+F
Sbjct: 36 VVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFF 95
Query: 238 RNGNPL 243
+NG +
Sbjct: 96 KNGQKI 101
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 166 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKV----DDECDIYGIHMVKIQDPQ 221
+T ++ VE L V F+ C C I LE++ + + DI + + ++P
Sbjct: 8 VTDADFDSKVESGVQL-VDFWATACGPCKMIAPVLEELAADYEGKADILKLDV--DENPS 64
Query: 222 LAKRYSIKTFPALVYFRNGNPL 243
A +Y + + P L+ F++G P+
Sbjct: 65 TAAKYEVMSIPTLIVFKDGQPV 86
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 166 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKV----DDECDIYGIHMVKIQDPQ 221
+T ++ VE L V F+ C C I LE++ + + DI + + ++P
Sbjct: 9 VTDADFDSKVESGVQL-VDFWATWCGTCKMIAPVLEELAADYEGKADILKLDV--DENPS 65
Query: 222 LAKRYSIKTFPALVYFRNGNPL 243
A +Y + + P L+ F++G P+
Sbjct: 66 TAAKYEVMSIPTLIVFKDGQPV 87
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239
V F+ C C I LE++ DE + + K+ Q+P A +Y I+ P L+ F+N
Sbjct: 25 VDFWAEWCGPCKMIAPILEEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 240 G 240
G
Sbjct: 84 G 84
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 160 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI- 217
D+I +T ET +++ + V F+ C C I L+++ DE + + K+
Sbjct: 1 SDKIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLN 59
Query: 218 --QDPQLAKRYSIKTFPALVYFRNG 240
Q+P A +Y I+ P L+ F+NG
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239
V F+ C C I L+++ DE + + K+ Q+P A +Y I++ P L+ F+N
Sbjct: 25 VDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRSIPTLLLFKN 83
Query: 240 G 240
G
Sbjct: 84 G 84
>pdb|1A8L|A Chain A, Protein Disulfide Oxidoreductase From Archaeon Pyrococcus
Furiosus
Length = 226
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 181 LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQ---LAKRYSIKTFPALVYF 237
L V+ K +C CDQ+ + ++++ + D +V P+ LAKRY I PA
Sbjct: 26 LIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTIT 85
Query: 238 RNG 240
++G
Sbjct: 86 QDG 88
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 166 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKV----DDECDIYGIHMVKIQDPQ 221
+T ++ VE L V F+ C C I LE++ + + DI + + ++P
Sbjct: 8 VTDADFDSKVESGVQL-VDFWATWCGSCKMIAPVLEELAADYEGKADILKLDV--DENPS 64
Query: 222 LAKRYSIKTFPALVYFRNGNPL 243
A +Y + + P L+ F++G P+
Sbjct: 65 TAAKYEVMSIPTLIVFKDGQPV 86
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDE--CDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNG 240
V F+ C C + LE++ E D+ + +P+ A+ + + + P L+ F++G
Sbjct: 35 VDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDG 94
Query: 241 NPL 243
P+
Sbjct: 95 QPV 97
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239
V F+ C C+ I L+++ DE + + K+ Q+P A +Y I+ P L+ F+N
Sbjct: 25 VDFWAEWCGPCEMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 240 G 240
G
Sbjct: 84 G 84
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 166 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKV----DDECDIYGIHMVKIQDPQ 221
+T ++ VE L V F+ C C I LE++ + + DI + + ++P
Sbjct: 9 VTDADFDSKVESGVQL-VDFWATWCGPCKMIAPVLEELAADYEGKADILKLDV--DENPS 65
Query: 222 LAKRYSIKTFPALVYFRNGNPL 243
A +Y + + P L+ F++G P+
Sbjct: 66 TAAKYEVMSIPTLIVFKDGQPV 87
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDE--CDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNG 240
V F+ C C + LE++ E D+ + +P+ A+ + + + P L+ F++G
Sbjct: 30 VDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDG 89
Query: 241 NPL 243
P+
Sbjct: 90 QPV 92
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 160 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI- 217
D+I +T +T +++ + V F+ C C I L+++ DE + + K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLN 59
Query: 218 --QDPQLAKRYSIKTFPALVYFRNGN 241
Q+P A +Y I+ P L+ F+NG+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNGD 85
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 160 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI- 217
D+I +T +T +++ + V F+ C C I L+++ DE + + K+
Sbjct: 1 SDKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLN 59
Query: 218 --QDPQLAKRYSIKTFPALVYFRNG 240
Q+P A +Y I+ P L+ F+NG
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 160 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI- 217
D+I +T +T +++ + V F+ C C I L+++ DE + + K+
Sbjct: 1 SDKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLN 59
Query: 218 --QDPQLAKRYSIKTFPALVYFRNG 240
Q+P A +Y I+ P L+ F+NG
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|4ALL|A Chain A, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And Triclosan (P212121)
pdb|4ALL|B Chain B, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And Triclosan (P212121)
pdb|4ALL|C Chain C, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And Triclosan (P212121)
pdb|4ALL|D Chain D, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And Triclosan (P212121)
Length = 277
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 37 FDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLE 96
F K+L L ++ VF + +E +R+ L+KLLE+ Y+ D + +V+ E
Sbjct: 43 FGVAKVLDQLGAKLVFTYR---KERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFE 99
Query: 97 KIDGETDNMD-----ITFVKMADPR 116
+I + N+D I F M D R
Sbjct: 100 QIGKDVGNIDGVYHSIAFANMEDLR 124
>pdb|3GNS|A Chain A, Crystal Structure Of The Staphylococcus Aureus Enoyl-Acyl
Carrier Protein Reductase (Fabi) In Apo Form (One
Molecule In Au)
pdb|3GR6|A Chain A, Crystal Structure Of The Staphylococcus Aureus Enoyl-Acyl
Carrier Protein Reductase (Fabi) In Complex With Nadp
And Triclosan
pdb|3GR6|D Chain D, Crystal Structure Of The Staphylococcus Aureus Enoyl-Acyl
Carrier Protein Reductase (Fabi) In Complex With Nadp
And Triclosan
pdb|3GR6|G Chain G, Crystal Structure Of The Staphylococcus Aureus Enoyl-Acyl
Carrier Protein Reductase (Fabi) In Complex With Nadp
And Triclosan
pdb|3GR6|J Chain J, Crystal Structure Of The Staphylococcus Aureus Enoyl-Acyl
Carrier Protein Reductase (Fabi) In Complex With Nadp
And Triclosan
Length = 260
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 37 FDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLE 96
F K+L L ++ VF + +E +R+ L+KLLE+ Y+ D + +V+ E
Sbjct: 26 FGVAKVLDQLGAKLVFTYR---KERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFE 82
Query: 97 KIDGETDNMD-----ITFVKMADPR 116
+I + N+D I F M D R
Sbjct: 83 QIGKDVGNIDGVYHSIAFANMEDLR 107
>pdb|4FS3|A Chain A, Crystal Structure Of Staphylococcus Aureus Enoyl-Acp
Reductase In Complex With Nadp And Afn-1252
Length = 256
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 37 FDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLE 96
F K+L L ++ VF + +E +R+ L+KLLE+ Y+ D + +V+ E
Sbjct: 22 FGVAKVLDQLGAKLVFTYR---KERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFE 78
Query: 97 KIDGETDNMD-----ITFVKMADPR 116
+I + N+D I F M D R
Sbjct: 79 QIGKDVGNIDGVYHSIAFANMEDLR 103
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239
V F+ C C I L+++ DE + + K+ Q+P A +Y I+ P L+ F+N
Sbjct: 25 VDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 240 G 240
G
Sbjct: 84 G 84
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239
V F+ C C I L+++ DE + + K+ Q+P A +Y I+ P L+ F+N
Sbjct: 25 VDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 240 G 240
G
Sbjct: 84 G 84
>pdb|3GNT|A Chain A, Crystal Structure Of The Staphylococcus Aureus Enoyl-Acyl
Carrier Protein Reductase (Fabi) In Apo Form (Two
Molecules In Au)
pdb|3GNT|B Chain B, Crystal Structure Of The Staphylococcus Aureus Enoyl-Acyl
Carrier Protein Reductase (Fabi) In Apo Form (Two
Molecules In Au)
Length = 256
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 37 FDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLE 96
F K+L L ++ VF + +E +R+ L+KLLE+ Y+ D + +V+ E
Sbjct: 22 FGVAKVLDQLGAKLVFTYR---KERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFE 78
Query: 97 KIDGETDNMD-----ITFVKMADPR 116
+I + N+D I F M D R
Sbjct: 79 QIGKDVGNIDGVYHSIAFANMEDLR 103
>pdb|4ALI|A Chain A, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And Triclosan (P1)
pdb|4ALI|B Chain B, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And Triclosan (P1)
pdb|4ALI|C Chain C, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And Triclosan (P1)
pdb|4ALI|D Chain D, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And Triclosan (P1)
pdb|4ALI|E Chain E, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And Triclosan (P1)
pdb|4ALI|F Chain F, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And Triclosan (P1)
pdb|4ALI|G Chain G, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And Triclosan (P1)
pdb|4ALI|H Chain H, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And Triclosan (P1)
pdb|4ALJ|A Chain A, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Chloro-2-Phenoxyphenol
pdb|4ALJ|B Chain B, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Chloro-2-Phenoxyphenol
pdb|4ALJ|C Chain C, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Chloro-2-Phenoxyphenol
pdb|4ALJ|D Chain D, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Chloro-2-Phenoxyphenol
pdb|4ALJ|E Chain E, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Chloro-2-Phenoxyphenol
pdb|4ALJ|F Chain F, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Chloro-2-Phenoxyphenol
pdb|4ALJ|G Chain G, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Chloro-2-Phenoxyphenol
pdb|4ALJ|H Chain H, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Chloro-2-Phenoxyphenol
pdb|4ALK|A Chain A, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Ethyl-2-Phenoxyphenol
pdb|4ALK|B Chain B, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Ethyl-2-Phenoxyphenol
pdb|4ALK|C Chain C, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Ethyl-2-Phenoxyphenol
pdb|4ALK|D Chain D, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Ethyl-2-Phenoxyphenol
pdb|4ALK|E Chain E, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Ethyl-2-Phenoxyphenol
pdb|4ALK|F Chain F, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Ethyl-2-Phenoxyphenol
pdb|4ALK|G Chain G, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Ethyl-2-Phenoxyphenol
pdb|4ALK|H Chain H, Crystal Structure Of S. Aureus Fabi In Complex With Nadp
And 5-Ethyl-2-Phenoxyphenol
pdb|4ALM|A Chain A, Crystal Structure Of S. Aureus Fabi (P43212)
pdb|4ALM|B Chain B, Crystal Structure Of S. Aureus Fabi (P43212)
pdb|4ALM|C Chain C, Crystal Structure Of S. Aureus Fabi (P43212)
pdb|4ALM|D Chain D, Crystal Structure Of S. Aureus Fabi (P43212)
pdb|4ALN|A Chain A, Crystal Structure Of S. Aureus Fabi (P32)
pdb|4ALN|B Chain B, Crystal Structure Of S. Aureus Fabi (P32)
pdb|4ALN|C Chain C, Crystal Structure Of S. Aureus Fabi (P32)
pdb|4ALN|D Chain D, Crystal Structure Of S. Aureus Fabi (P32)
pdb|4ALN|E Chain E, Crystal Structure Of S. Aureus Fabi (P32)
pdb|4ALN|F Chain F, Crystal Structure Of S. Aureus Fabi (P32)
pdb|4ALN|G Chain G, Crystal Structure Of S. Aureus Fabi (P32)
pdb|4ALN|H Chain H, Crystal Structure Of S. Aureus Fabi (P32)
pdb|4ALN|I Chain I, Crystal Structure Of S. Aureus Fabi (P32)
pdb|4ALN|J Chain J, Crystal Structure Of S. Aureus Fabi (P32)
pdb|4ALN|K Chain K, Crystal Structure Of S. Aureus Fabi (P32)
pdb|4ALN|L Chain L, Crystal Structure Of S. Aureus Fabi (P32)
Length = 282
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 37 FDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLE 96
F K+L L ++ VF + +E +R+ L+KLLE+ Y+ D + +V+ E
Sbjct: 48 FGVAKVLDQLGAKLVFTYR---KERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFE 104
Query: 97 KIDGETDNMD-----ITFVKMADPR 116
+I + N+D I F M D R
Sbjct: 105 QIGKDVGNIDGVYHSIAFANMEDLR 129
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 218 QDPQLAKRYSIKTFPALVYFRNGNPL 243
++P +A RY + + P +++F++G P+
Sbjct: 57 ENPDIAARYGVMSLPTVIFFKDGEPV 82
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 160 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI- 217
D+I +T +T +++ + V F+ C C I L+++ DE + + K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLN 59
Query: 218 --QDPQLAKRYSIKTFPALVYFRNG 240
Q+P A +Y I+ P L+ F+NG
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239
V F+ C C I L+++ DE + + K+ Q+P A +Y I+ P L+ F+N
Sbjct: 35 VDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 93
Query: 240 G 240
G
Sbjct: 94 G 94
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239
V F+ C C I L+++ DE + + K+ Q+P A +Y I+ P L+ F+N
Sbjct: 25 VDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 240 G 240
G
Sbjct: 84 G 84
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 160 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYG-IHMVKI 217
D+I +T +T +++ + V F+ C C I L+++ D D G + + K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD--DYQGKLTVAKL 58
Query: 218 ---QDPQLAKRYSIKTFPALVYFRNG 240
Q+P A +Y I+ P L+ F+NG
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 167 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDD---ECDIYGIHMVKIQDPQLA 223
T ++ + + + + V FY C C I +EK + + D Y + + ++ D +A
Sbjct: 7 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGD--VA 64
Query: 224 KRYSIKTFPALVYFRNG 240
++ + P L+ F+NG
Sbjct: 65 QKNEVSAMPTLLLFKNG 81
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 167 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDD---ECDIYGIHMVKIQDPQLA 223
T ++ + + + + V FY C C I +EK + + D Y + + ++ D +A
Sbjct: 13 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGD--VA 70
Query: 224 KRYSIKTFPALVYFRNG 240
++ + P L+ F+NG
Sbjct: 71 QKNEVSAMPTLLLFKNG 87
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 160 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI- 217
D+I +T +T +++ + V F+ C C I L+ + DE + + K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQ-GKLTVAKLN 59
Query: 218 --QDPQLAKRYSIKTFPALVYFRNG 240
Q+P A +Y I+ P L+ F+NG
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 160 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI- 217
D+I +T +T +++ + V F+ C C I L+++ DE + + K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQ-GKLTVAKLN 59
Query: 218 --QDPQLAKRYSIKTFPALVYFRNG 240
Q+P A +Y I+ P L+ F+NG
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 160 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI- 217
D+I +T +T +++ + V F+ C C I L+++ DE + + K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLN 59
Query: 218 --QDPQLAKRYSIKTFPALVYFRNG 240
Q+P A +Y I+ P L+ F+NG
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 160 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI- 217
D+I +T +T +++ + V F+ C C I L+++ DE + + K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQ-GKLTVAKLN 59
Query: 218 --QDPQLAKRYSIKTFPALVYFRNG 240
Q+P A +Y I+ P L+ F+NG
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 160 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI- 217
D+I +T +T +++ + V F+ C C I L+++ DE + + K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLN 59
Query: 218 --QDPQLAKRYSIKTFPALVYFRNG 240
Q+P A +Y I+ P L+ F+NG
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239
V F+ C C I L+++ DE + + K+ Q+P A +Y I+ P L+ F+N
Sbjct: 26 VDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQNPGTAPKYGIRGTPTLLLFKN 84
Query: 240 G 240
G
Sbjct: 85 G 85
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 160 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYG-IHMVKI 217
D+I +T +T +++ + V F+ C C I L+++ DE G + + K+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE--YQGKLTVAKL 58
Query: 218 ---QDPQLAKRYSIKTFPALVYFRNG 240
Q+P A +Y I+ P L+ F+NG
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239
V F+ C C I L+++ DE + + K+ Q+P A +Y I+ P L+ F+N
Sbjct: 25 VDFWAEWCVWCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 240 G 240
G
Sbjct: 84 G 84
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQD----PQLAKRYSIKTFPALVYFR 238
V F+ C C I LE++ E + G +V D P+ A RY + + P ++ F+
Sbjct: 24 VDFWAEWCAPCRXIAPILEEIAKEYE--GKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 81
Query: 239 NGNPL 243
+G P+
Sbjct: 82 DGQPV 86
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQD----PQLAKRYSIKTFPALVYFR 238
V F+ C C I LE++ E + G +V D P+ A RY + + P ++ F+
Sbjct: 23 VDFWAEWCAPCRXIAPILEEIAKEYE--GKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 80
Query: 239 NGNPL 243
+G P+
Sbjct: 81 DGQPV 85
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239
V F+ C C I L+++ +E + + K+ Q+P A +Y I+ P L+ F+N
Sbjct: 25 VDFWAEWCGPCKMIAPILDEIAEEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 240 G 240
G
Sbjct: 84 G 84
>pdb|2B5X|A Chain A, Solution Structure Of A Thioredoxin-Like Protein In The
Reduced Form
pdb|2B5Y|A Chain A, Solution Structure Of A Thioredoxin-Like Protein In The
Oxidized Form
Length = 148
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 159 TEDRIELITRVMLETMVEETQYLAVYFYKLNCNICD----QILEGLEKVDDECDIYGIHM 214
T ++ L V E ++ E L ++F+ ++C++C Q+ E +K D+ ++ +HM
Sbjct: 11 TGEKAWLNGEVTREQLIGEKPTL-IHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHM 69
Query: 215 VKIQD 219
+ +D
Sbjct: 70 PRSED 74
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 166 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKV----DDECDIYGIHMVKIQDPQ 221
+T ++ VE L V F+ C I LE++ + + DI + + ++P
Sbjct: 9 VTDADFDSKVESGVQL-VDFWATWCGTSKMIAPVLEELAADYEGKADILKLDV--DENPS 65
Query: 222 LAKRYSIKTFPALVYFRNGNPL 243
A +Y + + P L+ F++G P+
Sbjct: 66 TAAKYEVMSIPTLIVFKDGQPV 87
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQD--PQLAKRYSIKTFPALVYFRNG 240
V F+ C C I +E++ E + + D P A +Y I++ P L+ F+NG
Sbjct: 24 VDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNG 83
Query: 241 N 241
Sbjct: 84 Q 84
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 166 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEK-VDDECDIYGIHMVKI-QDPQLA 223
+T + ++ + + V F+ C C + LE+ + D + + + ++P+
Sbjct: 5 LTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETT 64
Query: 224 KRYSIKTFPALVYFRNGNPL 243
++ I + P L+ F+ G P+
Sbjct: 65 SQFGIMSIPTLILFKGGRPV 84
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 166 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEK-VDDECDIYGIHMVKI-QDPQLA 223
+T + ++ + + V F+ C C + LE+ + D + + + ++P+
Sbjct: 5 LTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETT 64
Query: 224 KRYSIKTFPALVYFRNGNPL 243
++ I + P L+ F+ G P+
Sbjct: 65 SQFGIMSIPTLILFKGGEPV 84
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 172 ETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDE--CDIYGIHMVKIQDPQLAKRYSIK 229
E ++E + V F+ C C I ++++ E I + + P +A +Y+I+
Sbjct: 12 EFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIR 71
Query: 230 TFPALVYFRNG 240
+ P +++F+NG
Sbjct: 72 SIPTVLFFKNG 82
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 172 ETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDE--CDIYGIHMVKIQDPQLAKRYSIK 229
E ++E + V F+ C C I ++++ E I + + P +A +Y+I+
Sbjct: 11 EFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIR 70
Query: 230 TFPALVYFRNG 240
+ P +++F+NG
Sbjct: 71 SIPTVLFFKNG 81
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 160 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI- 217
D+I +T +T +V+ + V F+ C C I L+++ DE + + K+
Sbjct: 1 SDKIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLN 59
Query: 218 --QDPQLAKRYSIKTFPALVYFRNG 240
Q+P A +Y + P L+ F+NG
Sbjct: 60 IDQNPGTAPKYIERGIPTLLLFKNG 84
>pdb|1B8M|A Chain A, Brain Derived Neurotrophic Factor, Neurotrophin-4
Length = 119
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 134 HRFPSIYRGDLSEEEEVLQWLIT--QKTEDRIELITRVMLETMVEETQYLAVYFYKLNCN 191
H P+ RG+LS + + +W+ +KT + T +LE + L YFY+ CN
Sbjct: 1 HSDPA-RRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCN 59
Query: 192 ICDQILEGLEKVD 204
EG +D
Sbjct: 60 PMGYTKEGCRGID 72
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/85 (17%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 157 QKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVK 216
+K ++ ++ + + + + + + V F+ C C + +E++ ++ +
Sbjct: 2 EKVKEPVKHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLN 61
Query: 217 IQDPQ-LAKRYSIKTFPALVYFRNG 240
++ Q +A RY I + P +++F+NG
Sbjct: 62 TEESQDIAMRYGIMSLPTIMFFKNG 86
>pdb|1BND|A Chain A, Structure Of The Brain-Derived Neurotrophic
Factor(Slash)neurotrophin 3 Heterodimer
Length = 119
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 134 HRFPSIYRGDLSEEEEVLQWLIT--QKTEDRIELITRVMLETMVEETQYLAVYFYKLNCN 191
H P+ RG LS + + +W+ +KT + T +LE + L YFY+ CN
Sbjct: 1 HSDPA-RRGQLSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCN 59
Query: 192 ICDQILEGLEKVD 204
EG +D
Sbjct: 60 PMGYTKEGCRGID 72
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
pdb|1U7C|A Chain A, Crystal Structure Of Amtb From E.Coli With Methyl
Ammonium.
pdb|1U7G|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
Length = 385
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 200 LEKVDDECDIYGIHMV 215
L +VDD CD++G+H V
Sbjct: 305 LLRVDDPCDVFGVHGV 320
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb
Complexed With The Signal Transduction Protein Glnk
Length = 412
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 196 ILEGLEKVDDECDIYGIHMV 215
+L+ L +VDD CD++G+H V
Sbjct: 301 MLKRLLRVDDPCDVFGVHGV 320
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 200 LEKVDDECDIYGIHMV 215
L +VDD CD++G+H V
Sbjct: 305 LLRVDDPCDVFGVHGV 320
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 200 LEKVDDECDIYGIHMV 215
L +VDD CD++G+H V
Sbjct: 305 LLRVDDPCDVFGVHGV 320
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 200 LEKVDDECDIYGIHMV 215
L +VDD CD++G+H V
Sbjct: 305 LLRVDDPCDVFGVHGV 320
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli.
pdb|1XQF|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli
Length = 418
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 200 LEKVDDECDIYGIHMV 215
L +VDD CD++G+H V
Sbjct: 305 LLRVDDPCDVFGVHGV 320
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NOP|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|3C1G|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 200 LEKVDDECDIYGIHMV 215
L +VDD CD++G+H V
Sbjct: 305 LLRVDDPCDVFGVHGV 320
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|B Chain B, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|C Chain C, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|D Chain D, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|E Chain E, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|F Chain F, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
Length = 415
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 200 LEKVDDECDIYGIHMV 215
L +VDD CD++G+H V
Sbjct: 314 LLRVDDPCDVFGVHGV 329
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 200 LEKVDDECDIYGIHMV 215
L +VDD CD++G+H V
Sbjct: 305 LLRVDDPCDVFGVHGV 320
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 200 LEKVDDECDIYGIHMV 215
L +VDD CD++G+H V
Sbjct: 305 LLRVDDPCDVFGVHGV 320
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 200 LEKVDDECDIYGIHMV 215
L +VDD CD++G+H V
Sbjct: 305 LLRVDDPCDVFGVHGV 320
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQD-PQLAKRYSIKTFPALVYFRNG 240
V+F+K C C + + L+K I V + P+L K + P LV+ R+G
Sbjct: 24 VFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDG 82
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 163 IELITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDP 220
IEL LE+++E+ + + V F+ C C I +++ ++ D + + +
Sbjct: 16 IELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVDKLE 75
Query: 221 QLAKRYSIKTFPALVYFRNG 240
+ A++Y+I P + +NG
Sbjct: 76 ETARKYNISAMPTFIAIKNG 95
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 163 IELITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDP 220
IEL LE+++E+ + + V F+ C C I +++ ++ D + + +
Sbjct: 7 IELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVDKLE 66
Query: 221 QLAKRYSIKTFPALVYFRNG 240
+ A++Y+I P + +NG
Sbjct: 67 ETARKYNISAMPTFIAIKNG 86
>pdb|1R3F|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 314
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 24/82 (29%)
Query: 197 LEGLEKVDDECDIYGIHMVKIQDPQL------AKRYSIKTFP--ALVYFRNGNPL----- 243
LE L ++ ++ + I ++ DP L A Y + P + VYF+NGNP+
Sbjct: 216 LEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA 275
Query: 244 -------IFEGENKILKGTYIG 258
+ EGEN G +IG
Sbjct: 276 PLEGLVRVTEGEN----GKFIG 293
>pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudouridine Synthase
Trub Bound To A T Stem-Loop Rna
Length = 327
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 24/82 (29%)
Query: 197 LEGLEKVDDECDIYGIHMVKIQDPQL------AKRYSIKTFP--ALVYFRNGNPL----- 243
LE L ++ ++ + I ++ DP L A Y + P + VYF+NGNP+
Sbjct: 229 LEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA 288
Query: 244 -------IFEGENKILKGTYIG 258
+ EGEN G +IG
Sbjct: 289 PLEGLVRVTEGEN----GKFIG 306
>pdb|1ZL3|A Chain A, Coupling Of Active Site Motions And Rna Binding
Length = 327
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 24/82 (29%)
Query: 197 LEGLEKVDDECDIYGIHMVKIQDPQL------AKRYSIKTFP--ALVYFRNGNPL----- 243
LE L ++ ++ + I ++ DP L A Y + P + VYF+NGNP+
Sbjct: 229 LEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA 288
Query: 244 -------IFEGENKILKGTYIG 258
+ EGEN G +IG
Sbjct: 289 PLEGLVRVTEGEN----GKFIG 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,674,936
Number of Sequences: 62578
Number of extensions: 371720
Number of successful extensions: 992
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 106
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)