Query psy159
Match_columns 285
No_of_seqs 217 out of 2571
Neff 9.7
Searched_HMMs 46136
Date Sat Aug 17 00:28:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190|consensus 100.0 2.5E-38 5.3E-43 279.2 15.9 208 44-253 13-464 (493)
2 PTZ00102 disulphide isomerase; 100.0 5.6E-29 1.2E-33 228.5 23.7 206 55-263 31-464 (477)
3 KOG0191|consensus 100.0 5.9E-28 1.3E-32 215.0 18.6 205 58-266 31-254 (383)
4 TIGR02187 GlrX_arch Glutaredox 99.9 3.8E-26 8.3E-31 187.7 20.2 191 63-261 10-213 (215)
5 KOG0191|consensus 99.9 3.9E-26 8.5E-31 203.4 14.4 237 4-242 88-356 (383)
6 TIGR01130 ER_PDI_fam protein d 99.9 8.9E-23 1.9E-27 186.7 21.2 219 57-282 2-232 (462)
7 TIGR01130 ER_PDI_fam protein d 99.9 7.1E-22 1.5E-26 180.7 24.0 251 4-264 165-454 (462)
8 KOG0912|consensus 99.9 5.8E-22 1.3E-26 162.2 14.8 207 61-277 1-220 (375)
9 KOG4277|consensus 99.9 4.7E-22 1E-26 162.6 13.2 191 71-274 41-240 (468)
10 KOG0190|consensus 99.9 4.8E-22 1E-26 176.2 12.0 102 57-159 367-474 (493)
11 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.3E-21 2.7E-26 143.4 10.5 97 56-154 9-113 (113)
12 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.1E-20 2.4E-25 136.7 11.0 95 57-153 2-100 (101)
13 PF00085 Thioredoxin: Thioredo 99.8 5.8E-20 1.3E-24 133.3 12.0 98 58-157 1-103 (103)
14 cd02996 PDI_a_ERp44 PDIa famil 99.8 3.2E-20 7E-25 136.0 10.6 97 57-154 2-108 (108)
15 cd02994 PDI_a_TMX PDIa family, 99.8 6E-20 1.3E-24 132.9 11.4 97 57-156 2-101 (101)
16 cd03007 PDI_a_ERp29_N PDIa fam 99.8 7E-20 1.5E-24 133.4 10.7 94 58-157 3-115 (116)
17 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 2.2E-19 4.7E-24 130.7 10.9 95 58-154 3-104 (104)
18 cd03065 PDI_b_Calsequestrin_N 99.8 4.7E-19 1E-23 130.6 10.0 101 56-157 9-118 (120)
19 cd03006 PDI_a_EFP1_N PDIa fami 99.8 8.6E-19 1.9E-23 128.4 10.7 91 161-252 9-107 (113)
20 cd02993 PDI_a_APS_reductase PD 99.8 1.8E-18 4E-23 126.8 10.9 97 57-154 2-109 (109)
21 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 2E-18 4.3E-23 124.9 10.2 88 163-251 3-94 (101)
22 cd03002 PDI_a_MPD1_like PDI fa 99.8 4E-18 8.6E-23 125.1 10.5 96 58-155 2-109 (109)
23 PTZ00443 Thioredoxin domain-co 99.8 6.6E-18 1.4E-22 137.9 12.4 102 55-158 29-139 (224)
24 cd03005 PDI_a_ERp46 PDIa famil 99.8 4.4E-18 9.4E-23 123.3 10.2 95 58-154 2-102 (102)
25 PTZ00102 disulphide isomerase; 99.8 8.7E-18 1.9E-22 154.5 14.7 150 9-159 294-466 (477)
26 KOG0910|consensus 99.8 3.8E-18 8.1E-23 127.5 9.7 100 57-158 44-148 (150)
27 cd02963 TRX_DnaJ TRX domain, D 99.8 5.6E-18 1.2E-22 124.5 10.6 96 60-156 8-110 (111)
28 cd03001 PDI_a_P5 PDIa family, 99.8 8.2E-18 1.8E-22 122.0 11.3 95 58-154 2-102 (103)
29 TIGR02187 GlrX_arch Glutaredox 99.8 1.7E-17 3.6E-22 136.4 13.6 144 5-156 65-214 (215)
30 PF00085 Thioredoxin: Thioredo 99.8 2.3E-17 5.1E-22 119.5 12.6 97 163-262 1-102 (103)
31 KOG0910|consensus 99.8 8.2E-18 1.8E-22 125.7 10.2 98 161-262 43-145 (150)
32 cd02948 TRX_NDPK TRX domain, T 99.7 2E-17 4.4E-22 119.8 11.6 95 60-156 4-101 (102)
33 cd02996 PDI_a_ERp44 PDIa famil 99.7 1.8E-17 3.8E-22 121.4 10.9 89 163-251 3-101 (108)
34 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 1.5E-17 3.3E-22 120.8 10.3 96 58-154 2-104 (104)
35 cd02999 PDI_a_ERp44_like PDIa 99.7 1.7E-17 3.8E-22 119.5 10.2 80 72-154 17-100 (100)
36 PTZ00062 glutaredoxin; Provisi 99.7 2.6E-16 5.7E-21 126.4 18.0 168 62-249 5-182 (204)
37 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 2.7E-17 5.9E-22 119.6 11.0 87 163-250 3-95 (104)
38 cd02954 DIM1 Dim1 family; Dim1 99.7 5.7E-17 1.2E-21 117.7 12.0 81 168-249 2-88 (114)
39 TIGR01126 pdi_dom protein disu 99.7 3.5E-17 7.5E-22 118.4 10.6 96 61-157 1-101 (102)
40 PHA02278 thioredoxin-like prot 99.7 4.4E-17 9.6E-22 117.4 10.9 91 62-153 3-100 (103)
41 cd03065 PDI_b_Calsequestrin_N 99.7 4E-17 8.6E-22 120.4 10.7 98 161-261 9-116 (120)
42 cd02997 PDI_a_PDIR PDIa family 99.7 3.9E-17 8.4E-22 118.7 10.5 96 58-154 2-104 (104)
43 cd02994 PDI_a_TMX PDIa family, 99.7 5.8E-17 1.3E-21 117.2 11.1 87 163-251 3-92 (101)
44 PRK09381 trxA thioredoxin; Pro 99.7 7.6E-17 1.7E-21 118.3 11.7 102 55-158 2-108 (109)
45 PHA02278 thioredoxin-like prot 99.7 7.4E-17 1.6E-21 116.2 11.3 83 167-250 3-93 (103)
46 COG3118 Thioredoxin domain-con 99.7 3.7E-17 7.9E-22 135.0 10.7 103 56-160 23-132 (304)
47 PRK10996 thioredoxin 2; Provis 99.7 1.1E-16 2.3E-21 122.4 12.4 100 56-157 35-138 (139)
48 cd02956 ybbN ybbN protein fami 99.7 1E-16 2.2E-21 114.8 10.3 89 65-155 2-96 (96)
49 cd03000 PDI_a_TMX3 PDIa family 99.7 8.5E-17 1.8E-21 117.0 9.6 92 64-157 7-103 (104)
50 cd02965 HyaE HyaE family; HyaE 99.7 1.4E-16 3.1E-21 114.8 10.1 102 42-151 2-109 (111)
51 cd02954 DIM1 Dim1 family; Dim1 99.7 1.9E-16 4.1E-21 115.0 10.3 75 63-138 2-81 (114)
52 TIGR00424 APS_reduc 5'-adenyly 99.7 1.8E-16 3.8E-21 141.9 12.2 101 55-156 350-461 (463)
53 cd02962 TMX2 TMX2 family; comp 99.7 2.9E-16 6.3E-21 120.8 11.7 92 51-142 23-126 (152)
54 cd02998 PDI_a_ERp38 PDIa famil 99.7 1.8E-16 3.8E-21 115.3 9.6 96 58-154 2-105 (105)
55 cd02948 TRX_NDPK TRX domain, T 99.7 7.1E-16 1.5E-20 111.6 12.5 84 165-248 4-90 (102)
56 cd02985 TRX_CDSP32 TRX family, 99.7 4.3E-16 9.4E-21 112.9 11.2 90 62-155 2-100 (103)
57 cd03002 PDI_a_MPD1_like PDI fa 99.7 3.2E-16 6.9E-21 114.9 10.0 95 163-260 2-108 (109)
58 cd02961 PDI_a_family Protein D 99.7 4.3E-16 9.3E-21 112.0 10.3 94 60-154 2-101 (101)
59 PLN02309 5'-adenylylsulfate re 99.7 3.7E-16 8E-21 139.7 12.0 101 55-156 344-455 (457)
60 cd03001 PDI_a_P5 PDIa family, 99.7 6E-16 1.3E-20 112.2 10.8 95 163-260 2-102 (103)
61 cd02963 TRX_DnaJ TRX domain, D 99.7 7.9E-16 1.7E-20 113.1 11.3 86 165-250 8-100 (111)
62 cd02965 HyaE HyaE family; HyaE 99.7 9.1E-16 2E-20 110.7 11.0 96 151-250 3-104 (111)
63 cd02956 ybbN ybbN protein fami 99.7 1.1E-15 2.3E-20 109.4 11.1 80 170-250 2-87 (96)
64 cd02999 PDI_a_ERp44_like PDIa 99.7 8.4E-16 1.8E-20 110.7 10.5 73 177-251 17-93 (100)
65 cd02985 TRX_CDSP32 TRX family, 99.7 2E-15 4.3E-20 109.4 12.3 81 167-249 2-91 (103)
66 cd02992 PDI_a_QSOX PDIa family 99.7 1.2E-15 2.6E-20 112.5 11.1 87 57-143 2-101 (114)
67 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.4E-15 3E-20 110.0 10.7 87 163-250 2-94 (102)
68 PTZ00443 Thioredoxin domain-co 99.7 2.2E-15 4.8E-20 123.1 12.9 98 161-261 30-136 (224)
69 PRK10996 thioredoxin 2; Provis 99.6 3.5E-15 7.5E-20 114.0 12.8 87 163-250 37-127 (139)
70 cd02957 Phd_like Phosducin (Ph 99.6 1.9E-15 4.2E-20 111.4 10.9 85 161-248 4-95 (113)
71 cd02993 PDI_a_APS_reductase PD 99.6 2.3E-15 5.1E-20 110.3 10.9 95 163-259 3-108 (109)
72 COG3118 Thioredoxin domain-con 99.6 1.3E-15 2.8E-20 125.9 10.5 97 162-262 24-127 (304)
73 cd03007 PDI_a_ERp29_N PDIa fam 99.6 1.4E-15 3.1E-20 110.8 9.4 92 164-262 4-114 (116)
74 cd02984 TRX_PICOT TRX domain, 99.6 3.3E-15 7.1E-20 107.1 10.9 90 62-154 1-96 (97)
75 cd02962 TMX2 TMX2 family; comp 99.6 4.3E-15 9.2E-20 114.3 12.1 87 161-247 28-126 (152)
76 cd02997 PDI_a_PDIR PDIa family 99.6 3E-15 6.5E-20 108.6 10.7 88 163-250 2-96 (104)
77 cd02989 Phd_like_TxnDC9 Phosdu 99.6 4E-15 8.6E-20 109.5 11.3 79 167-247 11-93 (113)
78 cd02957 Phd_like Phosducin (Ph 99.6 2.5E-15 5.3E-20 110.9 9.7 85 56-142 4-94 (113)
79 cd02953 DsbDgamma DsbD gamma f 99.6 2.1E-15 4.5E-20 109.6 9.2 90 64-155 2-104 (104)
80 PRK09381 trxA thioredoxin; Pro 99.6 8.8E-15 1.9E-19 107.3 12.1 89 161-250 3-96 (109)
81 TIGR01068 thioredoxin thioredo 99.6 6E-15 1.3E-19 106.3 11.0 95 61-157 1-100 (101)
82 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 4E-15 8.6E-20 108.0 9.9 89 163-251 2-97 (104)
83 cd02989 Phd_like_TxnDC9 Phosdu 99.6 5.7E-15 1.2E-19 108.7 10.3 80 57-138 5-88 (113)
84 PF01216 Calsequestrin: Calseq 99.6 1.7E-13 3.7E-18 115.0 19.7 212 55-275 33-257 (383)
85 TIGR01126 pdi_dom protein disu 99.6 8.6E-15 1.9E-19 105.8 10.6 94 166-261 1-99 (102)
86 cd02950 TxlA TRX-like protein 99.6 1.6E-14 3.5E-19 110.7 10.6 96 63-159 10-111 (142)
87 cd02986 DLP Dim1 family, Dim1- 99.6 1.4E-14 3E-19 104.4 9.5 78 168-246 2-84 (114)
88 KOG4277|consensus 99.6 3.2E-15 6.9E-20 122.8 6.8 91 178-271 43-138 (468)
89 cd03000 PDI_a_TMX3 PDIa family 99.6 1.5E-14 3.3E-19 105.1 9.7 81 169-250 7-92 (104)
90 PTZ00051 thioredoxin; Provisio 99.6 2.9E-14 6.2E-19 102.4 11.0 84 164-249 4-91 (98)
91 cd02986 DLP Dim1 family, Dim1- 99.6 3.3E-14 7.1E-19 102.5 10.7 76 63-139 2-82 (114)
92 cd02984 TRX_PICOT TRX domain, 99.6 4.6E-14 1E-18 101.1 11.5 82 167-249 1-88 (97)
93 KOG0907|consensus 99.6 2.3E-14 5.1E-19 103.3 9.5 79 73-155 21-103 (106)
94 cd02950 TxlA TRX-like protein 99.6 7.9E-14 1.7E-18 106.8 12.6 98 169-267 11-116 (142)
95 cd02998 PDI_a_ERp38 PDIa famil 99.6 2.1E-14 4.5E-19 104.3 8.9 88 164-251 3-98 (105)
96 PTZ00051 thioredoxin; Provisio 99.6 3.7E-14 8E-19 101.8 10.0 86 58-145 2-92 (98)
97 KOG1731|consensus 99.6 6.6E-15 1.4E-19 130.8 6.9 181 55-243 38-249 (606)
98 PLN00410 U5 snRNP protein, DIM 99.6 6.6E-14 1.4E-18 105.7 11.3 80 62-142 10-97 (142)
99 cd02961 PDI_a_family Protein D 99.6 4.3E-14 9.3E-19 101.5 10.0 86 165-250 2-93 (101)
100 TIGR01068 thioredoxin thioredo 99.5 9.2E-14 2E-18 100.1 11.5 84 166-250 1-89 (101)
101 KOG0907|consensus 99.5 6.7E-14 1.5E-18 100.9 10.6 71 178-250 21-95 (106)
102 PF13848 Thioredoxin_6: Thiore 99.5 3.1E-13 6.7E-18 108.3 15.5 149 1-156 25-184 (184)
103 cd02992 PDI_a_QSOX PDIa family 99.5 4.8E-14 1E-18 104.0 9.2 87 162-248 2-101 (114)
104 PLN00410 U5 snRNP protein, DIM 99.5 1.3E-13 2.7E-18 104.2 11.4 82 166-248 9-98 (142)
105 cd02949 TRX_NTR TRX domain, no 99.5 1.1E-13 2.3E-18 99.3 10.1 84 70-155 10-97 (97)
106 TIGR01295 PedC_BrcD bacterioci 99.5 2E-13 4.2E-18 101.7 11.5 97 58-155 8-121 (122)
107 cd02987 Phd_like_Phd Phosducin 99.5 2.2E-13 4.9E-18 107.8 12.1 85 161-247 62-153 (175)
108 cd02975 PfPDO_like_N Pyrococcu 99.5 1.3E-13 2.8E-18 101.5 9.9 89 66-157 15-109 (113)
109 TIGR00424 APS_reduc 5'-adenyly 99.5 1.3E-13 2.9E-18 123.5 11.7 99 160-260 350-459 (463)
110 PLN02309 5'-adenylylsulfate re 99.5 1.7E-13 3.8E-18 122.7 12.1 101 159-261 343-454 (457)
111 cd02953 DsbDgamma DsbD gamma f 99.5 1.1E-13 2.4E-18 100.5 8.7 82 169-251 2-96 (104)
112 cd02949 TRX_NTR TRX domain, no 99.5 6E-13 1.3E-17 95.3 11.5 76 174-250 9-88 (97)
113 cd02947 TRX_family TRX family; 99.5 4.2E-13 9.1E-18 94.5 10.0 87 65-154 2-92 (93)
114 cd02982 PDI_b'_family Protein 99.5 6.5E-13 1.4E-17 96.2 10.4 92 64-157 3-102 (103)
115 cd02987 Phd_like_Phd Phosducin 99.5 3E-13 6.5E-18 107.1 9.2 82 55-138 61-148 (175)
116 TIGR01295 PedC_BrcD bacterioci 99.5 1.4E-12 3.1E-17 97.1 12.1 88 162-250 7-111 (122)
117 cd02988 Phd_like_VIAF Phosduci 99.4 9.8E-13 2.1E-17 105.5 11.3 85 161-247 82-170 (192)
118 cd02988 Phd_like_VIAF Phosduci 99.4 1.7E-12 3.6E-17 104.2 11.7 82 55-138 81-165 (192)
119 PF13848 Thioredoxin_6: Thiore 99.4 4.3E-11 9.3E-16 95.9 19.9 156 90-250 7-174 (184)
120 KOG0908|consensus 99.4 1.6E-12 3.4E-17 104.4 9.8 97 58-158 3-106 (288)
121 cd02975 PfPDO_like_N Pyrococcu 99.4 4.3E-12 9.3E-17 93.4 10.5 78 171-250 15-98 (113)
122 KOG0908|consensus 99.4 2.4E-12 5.1E-17 103.4 9.7 98 162-261 3-106 (288)
123 cd02951 SoxW SoxW family; SoxW 99.4 3.5E-12 7.5E-17 95.8 10.2 93 64-158 4-119 (125)
124 cd02947 TRX_family TRX family; 99.4 7.2E-12 1.6E-16 88.2 10.7 79 170-250 2-84 (93)
125 TIGR00412 redox_disulf_2 small 99.4 3.9E-12 8.6E-17 86.6 8.9 73 78-154 3-75 (76)
126 cd02952 TRP14_like Human TRX-r 99.3 9.2E-12 2E-16 91.6 9.7 78 165-243 6-103 (119)
127 TIGR00411 redox_disulf_1 small 99.3 1E-11 2.2E-16 86.0 9.3 76 77-157 3-81 (82)
128 cd02952 TRP14_like Human TRX-r 99.3 8.9E-12 1.9E-16 91.7 9.2 75 62-137 8-102 (119)
129 cd02951 SoxW SoxW family; SoxW 99.3 2.6E-11 5.6E-16 91.1 11.1 81 169-250 4-107 (125)
130 cd02982 PDI_b'_family Protein 99.3 2.6E-11 5.6E-16 87.7 9.8 70 178-248 12-88 (103)
131 TIGR03143 AhpF_homolog putativ 99.3 4.9E-10 1.1E-14 104.8 20.3 179 74-260 366-554 (555)
132 PF01216 Calsequestrin: Calseq 99.3 3.2E-09 7E-14 89.6 22.5 230 5-245 100-346 (383)
133 KOG0912|consensus 99.3 9.6E-12 2.1E-16 102.6 6.8 95 167-263 2-105 (375)
134 cd02959 ERp19 Endoplasmic reti 99.3 2E-11 4.3E-16 90.3 7.8 75 63-137 9-89 (117)
135 PTZ00062 glutaredoxin; Provisi 99.3 5.9E-11 1.3E-15 95.6 11.0 77 166-249 4-82 (204)
136 TIGR00412 redox_disulf_2 small 99.3 6.9E-11 1.5E-15 80.4 9.7 65 182-250 2-66 (76)
137 TIGR00411 redox_disulf_1 small 99.2 2.1E-10 4.5E-15 79.3 9.8 66 181-250 2-70 (82)
138 cd02959 ERp19 Endoplasmic reti 99.2 1.3E-10 2.7E-15 86.0 8.1 73 170-243 11-90 (117)
139 PRK00293 dipZ thiol:disulfide 99.1 3.5E-10 7.6E-15 105.5 11.0 93 62-157 459-569 (571)
140 PF13098 Thioredoxin_2: Thiore 99.1 3E-10 6.5E-15 83.4 7.6 81 72-154 4-112 (112)
141 PHA02125 thioredoxin-like prot 99.1 6.7E-10 1.4E-14 75.4 8.5 57 77-143 2-62 (75)
142 cd02955 SSP411 TRX domain, SSP 99.1 9.1E-10 2E-14 81.9 9.6 76 62-138 4-94 (124)
143 PHA02125 thioredoxin-like prot 99.0 2E-09 4.3E-14 73.1 7.9 57 182-248 2-62 (75)
144 cd02955 SSP411 TRX domain, SSP 99.0 5.5E-09 1.2E-13 77.7 10.9 76 167-243 4-94 (124)
145 TIGR02740 TraF-like TraF-like 99.0 2.1E-09 4.6E-14 91.0 9.7 85 73-159 166-265 (271)
146 KOG1731|consensus 99.0 1.1E-10 2.3E-15 104.5 1.8 81 160-240 38-126 (606)
147 PRK14018 trifunctional thiored 99.0 1.6E-09 3.5E-14 98.7 9.0 87 70-157 53-172 (521)
148 cd02973 TRX_GRX_like Thioredox 99.0 3.5E-09 7.6E-14 70.1 8.3 61 182-247 3-66 (67)
149 PF13098 Thioredoxin_2: Thiore 99.0 1.8E-09 3.9E-14 79.2 7.6 74 177-251 4-105 (112)
150 TIGR02738 TrbB type-F conjugat 99.0 1E-08 2.2E-13 79.3 11.4 85 70-156 47-151 (153)
151 cd02973 TRX_GRX_like Thioredox 99.0 2.2E-09 4.7E-14 71.2 6.4 53 77-131 3-58 (67)
152 PRK03147 thiol-disulfide oxido 98.9 7.4E-09 1.6E-13 82.1 9.6 85 72-157 60-171 (173)
153 cd03011 TlpA_like_ScsD_MtbDsbE 98.9 7.8E-09 1.7E-13 77.2 8.4 88 64-152 11-120 (123)
154 cd03009 TryX_like_TryX_NRX Try 98.9 6.3E-09 1.4E-13 78.7 7.8 67 72-138 17-113 (131)
155 PRK15317 alkyl hydroperoxide r 98.9 3.3E-07 7.1E-12 85.3 20.5 173 73-263 18-197 (517)
156 KOG0913|consensus 98.9 7.3E-10 1.6E-14 88.6 2.5 104 52-158 20-126 (248)
157 PRK11509 hydrogenase-1 operon 98.9 2.3E-08 5E-13 74.5 10.1 102 58-160 19-126 (132)
158 cd02967 mauD Methylamine utili 98.9 1.6E-08 3.4E-13 74.4 8.8 40 177-217 20-59 (114)
159 cd02967 mauD Methylamine utili 98.9 1.1E-08 2.4E-13 75.3 7.9 57 72-129 20-82 (114)
160 PF13905 Thioredoxin_8: Thiore 98.9 1.3E-08 2.8E-13 72.3 8.0 64 178-241 1-94 (95)
161 TIGR02740 TraF-like TraF-like 98.9 3.2E-08 7E-13 83.8 11.6 72 178-250 166-252 (271)
162 PRK14018 trifunctional thiored 98.9 1.1E-08 2.5E-13 93.2 9.3 75 177-251 55-162 (521)
163 PRK00293 dipZ thiol:disulfide 98.9 1.5E-08 3.3E-13 94.6 10.4 82 167-250 459-558 (571)
164 cd03008 TryX_like_RdCVF Trypar 98.9 9.7E-09 2.1E-13 78.5 7.4 67 72-138 24-126 (146)
165 PF13905 Thioredoxin_8: Thiore 98.8 1.7E-08 3.6E-13 71.8 7.9 62 73-134 1-91 (95)
166 cd02964 TryX_like_family Trypa 98.8 1.8E-08 3.9E-13 76.3 8.3 67 72-138 16-113 (132)
167 cd03026 AhpF_NTD_C TRX-GRX-lik 98.8 2.7E-08 5.8E-13 69.7 8.5 70 74-146 13-83 (89)
168 cd03008 TryX_like_RdCVF Trypar 98.8 2.2E-08 4.7E-13 76.6 8.5 71 177-247 24-130 (146)
169 cd03009 TryX_like_TryX_NRX Try 98.8 2.2E-08 4.8E-13 75.7 8.6 67 177-243 17-113 (131)
170 TIGR00385 dsbE periplasmic pro 98.8 2.9E-08 6.3E-13 78.8 9.4 85 71-158 61-171 (173)
171 PRK11509 hydrogenase-1 operon 98.8 7.9E-08 1.7E-12 71.6 10.9 89 163-251 19-113 (132)
172 cd02964 TryX_like_family Trypa 98.8 2.9E-08 6.3E-13 75.1 8.7 70 177-246 16-116 (132)
173 cd02966 TlpA_like_family TlpA- 98.8 1.9E-08 4E-13 73.5 7.4 65 73-137 19-110 (116)
174 cd03010 TlpA_like_DsbE TlpA-li 98.8 2.6E-08 5.7E-13 74.8 8.3 73 72-147 24-124 (127)
175 cd03026 AhpF_NTD_C TRX-GRX-lik 98.8 9.2E-08 2E-12 67.0 9.5 67 178-249 12-81 (89)
176 PRK15412 thiol:disulfide inter 98.8 5.3E-08 1.2E-12 78.1 9.4 81 72-157 67-175 (185)
177 cd02966 TlpA_like_family TlpA- 98.8 4.1E-08 8.9E-13 71.6 7.9 70 178-247 19-116 (116)
178 PLN02919 haloacid dehalogenase 98.7 4.6E-08 9.9E-13 97.5 10.1 86 72-158 419-536 (1057)
179 cd03010 TlpA_like_DsbE TlpA-li 98.7 4.2E-08 9.2E-13 73.7 7.2 71 177-250 24-122 (127)
180 KOG0914|consensus 98.7 3E-08 6.4E-13 78.4 5.9 84 54-137 122-217 (265)
181 cd02958 UAS UAS family; UAS is 98.7 2E-07 4.4E-12 68.6 10.2 89 66-156 10-109 (114)
182 TIGR02738 TrbB type-F conjugat 98.7 2E-07 4.4E-12 72.0 10.4 75 176-251 48-142 (153)
183 PRK03147 thiol-disulfide oxido 98.7 1.2E-07 2.6E-12 75.1 9.2 74 177-250 60-160 (173)
184 cd03011 TlpA_like_ScsD_MtbDsbE 98.7 9.7E-08 2.1E-12 71.2 7.7 73 176-250 18-114 (123)
185 KOG0914|consensus 98.7 2.8E-08 6.1E-13 78.6 4.6 84 160-243 123-218 (265)
186 PF13899 Thioredoxin_7: Thiore 98.6 1.1E-07 2.3E-12 65.7 6.8 69 64-133 8-81 (82)
187 smart00594 UAS UAS domain. 98.6 3.7E-07 8.1E-12 68.0 10.0 87 66-154 20-121 (122)
188 TIGR03140 AhpF alkyl hydropero 98.6 4.2E-06 9.2E-11 77.9 19.0 170 74-261 19-196 (515)
189 cd03012 TlpA_like_DipZ_like Tl 98.6 3.3E-07 7.3E-12 68.7 9.6 71 177-247 22-124 (126)
190 cd03012 TlpA_like_DipZ_like Tl 98.6 2.3E-07 5E-12 69.6 8.6 66 72-137 22-118 (126)
191 PRK15412 thiol:disulfide inter 98.6 4.1E-07 9E-12 73.0 10.4 71 177-251 67-165 (185)
192 TIGR00385 dsbE periplasmic pro 98.6 3.7E-07 8.1E-12 72.4 9.6 71 177-251 62-160 (173)
193 TIGR02661 MauD methylamine deh 98.6 4.3E-07 9.3E-12 73.1 10.1 83 72-155 73-176 (189)
194 COG4232 Thiol:disulfide interc 98.6 1.3E-07 2.9E-12 85.8 7.8 98 59-157 457-567 (569)
195 PRK13728 conjugal transfer pro 98.6 5.8E-07 1.3E-11 70.9 9.5 80 77-158 73-171 (181)
196 PLN02919 haloacid dehalogenase 98.5 4.4E-07 9.6E-12 90.6 10.4 74 177-250 419-524 (1057)
197 cd02960 AGR Anterior Gradient 98.5 4E-07 8.7E-12 67.8 7.6 68 64-134 14-88 (130)
198 PF13899 Thioredoxin_7: Thiore 98.5 6.2E-07 1.3E-11 61.9 7.6 68 170-238 9-81 (82)
199 cd02958 UAS UAS family; UAS is 98.5 1.6E-06 3.5E-11 63.8 10.2 81 171-252 10-101 (114)
200 TIGR03143 AhpF_homolog putativ 98.5 1.9E-06 4.2E-11 80.8 13.0 143 5-154 407-554 (555)
201 cd02960 AGR Anterior Gradient 98.5 8.1E-07 1.8E-11 66.2 8.0 76 171-249 16-100 (130)
202 KOG0913|consensus 98.5 4.7E-08 1E-12 78.3 1.3 114 162-280 25-141 (248)
203 PF08534 Redoxin: Redoxin; In 98.5 7.4E-07 1.6E-11 68.6 7.8 66 72-137 27-127 (146)
204 PF08534 Redoxin: Redoxin; In 98.4 1.8E-06 3.9E-11 66.4 9.5 74 177-250 27-136 (146)
205 cd02981 PDI_b_family Protein D 98.4 6.5E-06 1.4E-10 58.5 10.3 89 62-156 6-96 (97)
206 TIGR02661 MauD methylamine deh 98.4 4.1E-06 9E-11 67.4 10.2 71 177-249 73-165 (189)
207 PRK13728 conjugal transfer pro 98.3 3.3E-06 7.2E-11 66.6 8.9 66 182-250 73-159 (181)
208 smart00594 UAS UAS domain. 98.3 6.6E-06 1.4E-10 61.3 10.1 78 173-251 22-114 (122)
209 PF13192 Thioredoxin_3: Thiore 98.3 6.5E-06 1.4E-10 55.8 8.7 74 78-155 3-76 (76)
210 TIGR02196 GlrX_YruB Glutaredox 98.3 4.5E-06 9.9E-11 55.8 7.0 65 77-154 2-73 (74)
211 PF00578 AhpC-TSA: AhpC/TSA fa 98.2 4.4E-06 9.5E-11 62.1 7.1 69 72-140 24-123 (124)
212 PF02114 Phosducin: Phosducin; 98.2 8.4E-06 1.8E-10 68.7 9.4 102 161-265 125-238 (265)
213 PTZ00056 glutathione peroxidas 98.2 8.5E-06 1.8E-10 66.1 8.7 41 72-112 38-78 (199)
214 COG0526 TrxA Thiol-disulfide i 98.2 6E-06 1.3E-10 60.0 6.8 64 73-137 32-101 (127)
215 cd02969 PRX_like1 Peroxiredoxi 98.2 2E-05 4.4E-10 62.3 10.2 71 72-142 24-126 (171)
216 KOG0911|consensus 98.2 2.7E-05 5.8E-10 62.5 10.7 176 62-249 8-208 (227)
217 KOG1672|consensus 98.2 8.6E-06 1.9E-10 63.6 7.5 81 164-246 70-153 (211)
218 PF07912 ERp29_N: ERp29, N-ter 98.2 4.6E-05 9.9E-10 55.3 10.6 99 57-158 5-119 (126)
219 COG4232 Thiol:disulfide interc 98.1 5.7E-06 1.2E-10 75.4 7.1 94 164-261 457-565 (569)
220 COG2143 Thioredoxin-related pr 98.1 2.2E-05 4.8E-10 59.2 8.7 87 174-261 38-148 (182)
221 PF13728 TraF: F plasmid trans 98.1 1.7E-05 3.7E-10 64.9 8.7 78 73-152 120-212 (215)
222 PLN02399 phospholipid hydroper 98.1 2.9E-05 6.3E-10 64.3 10.0 41 72-112 98-138 (236)
223 cd01659 TRX_superfamily Thiore 98.1 1.2E-05 2.7E-10 51.4 6.2 57 77-135 1-63 (69)
224 COG0526 TrxA Thiol-disulfide i 98.1 1.5E-05 3.4E-10 57.8 7.1 65 178-243 32-102 (127)
225 cd02981 PDI_b_family Protein D 98.1 6.6E-05 1.4E-09 53.3 10.0 88 167-261 6-95 (97)
226 KOG2501|consensus 98.1 4E-06 8.7E-11 63.8 3.7 68 72-139 32-130 (157)
227 cd02969 PRX_like1 Peroxiredoxi 98.1 6.2E-05 1.3E-09 59.5 10.8 70 177-247 24-126 (171)
228 PLN02412 probable glutathione 98.1 2.4E-05 5.3E-10 61.6 8.3 41 72-112 28-68 (167)
229 PF00578 AhpC-TSA: AhpC/TSA fa 98.0 3.4E-05 7.3E-10 57.3 8.6 69 177-245 24-123 (124)
230 TIGR02200 GlrX_actino Glutared 98.0 3.8E-05 8.2E-10 51.9 8.1 55 77-137 2-62 (77)
231 cd01659 TRX_superfamily Thiore 98.0 3.2E-05 6.9E-10 49.4 7.2 57 182-240 1-63 (69)
232 PTZ00056 glutathione peroxidas 98.0 2.3E-05 5.1E-10 63.5 7.7 41 177-217 38-78 (199)
233 KOG2501|consensus 98.0 9.5E-06 2.1E-10 61.8 5.0 68 177-244 32-130 (157)
234 PF14595 Thioredoxin_9: Thiore 98.0 2E-05 4.4E-10 59.1 6.5 92 61-154 28-125 (129)
235 PF13192 Thioredoxin_3: Thiore 98.0 7.7E-05 1.7E-09 50.5 8.6 63 184-250 4-66 (76)
236 PF06110 DUF953: Eukaryotic pr 98.0 8.4E-05 1.8E-09 54.6 9.1 72 169-241 6-100 (119)
237 cd03072 PDI_b'_ERp44 PDIb' fam 98.0 9E-05 1.9E-09 54.1 9.2 97 58-158 1-108 (111)
238 TIGR02200 GlrX_actino Glutared 98.0 4E-05 8.6E-10 51.8 6.8 55 182-242 2-62 (77)
239 cd02970 PRX_like2 Peroxiredoxi 97.9 5.2E-05 1.1E-09 58.2 8.2 40 74-113 24-64 (149)
240 TIGR01626 ytfJ_HI0045 conserve 97.9 5.5E-05 1.2E-09 60.1 8.3 80 72-152 58-174 (184)
241 PF02114 Phosducin: Phosducin; 97.9 6E-05 1.3E-09 63.5 8.6 81 55-137 124-210 (265)
242 cd03017 PRX_BCP Peroxiredoxin 97.9 8.5E-05 1.8E-09 56.5 8.7 73 73-145 23-131 (140)
243 PF13728 TraF: F plasmid trans 97.9 0.00019 4E-09 58.8 11.2 72 178-250 120-206 (215)
244 TIGR01626 ytfJ_HI0045 conserve 97.9 7.2E-05 1.6E-09 59.4 8.3 75 178-252 59-170 (184)
245 PF03190 Thioredox_DsbH: Prote 97.9 7.3E-05 1.6E-09 57.8 8.0 93 150-243 8-116 (163)
246 PF14595 Thioredoxin_9: Thiore 97.9 7.9E-05 1.7E-09 55.9 7.6 71 178-250 41-118 (129)
247 COG2143 Thioredoxin-related pr 97.8 0.00035 7.5E-09 52.9 10.4 86 70-156 39-150 (182)
248 PF03190 Thioredox_DsbH: Prote 97.8 8.1E-05 1.8E-09 57.6 7.2 92 43-137 9-115 (163)
249 TIGR02196 GlrX_YruB Glutaredox 97.8 5.6E-05 1.2E-09 50.3 5.5 55 182-247 2-63 (74)
250 TIGR02180 GRX_euk Glutaredoxin 97.8 0.00011 2.4E-09 50.5 6.9 56 182-242 1-64 (84)
251 TIGR02739 TraF type-F conjugat 97.8 0.00015 3.3E-09 60.6 8.7 79 74-154 151-244 (256)
252 cd00340 GSH_Peroxidase Glutath 97.8 4.5E-05 9.8E-10 59.1 5.1 41 72-113 21-61 (152)
253 PRK10606 btuE putative glutath 97.7 0.0002 4.3E-09 57.1 8.6 121 72-203 24-180 (183)
254 TIGR02180 GRX_euk Glutaredoxin 97.7 7.4E-05 1.6E-09 51.4 5.5 55 77-136 1-63 (84)
255 cd02970 PRX_like2 Peroxiredoxi 97.7 0.00025 5.4E-09 54.4 9.0 39 179-217 24-63 (149)
256 PRK15317 alkyl hydroperoxide r 97.7 0.00047 1E-08 64.3 12.3 132 17-157 60-197 (517)
257 cd03017 PRX_BCP Peroxiredoxin 97.7 0.00024 5.3E-09 53.9 8.7 72 178-249 23-130 (140)
258 KOG3425|consensus 97.7 0.00028 6E-09 50.9 7.9 70 169-239 13-104 (128)
259 PF11009 DUF2847: Protein of u 97.7 0.00056 1.2E-08 48.8 9.2 80 165-245 4-93 (105)
260 PRK13703 conjugal pilus assemb 97.7 0.00024 5.3E-09 59.0 8.5 80 73-154 143-237 (248)
261 TIGR02540 gpx7 putative glutat 97.7 6.4E-05 1.4E-09 58.3 4.9 42 72-113 21-62 (153)
262 PF06110 DUF953: Eukaryotic pr 97.7 0.00027 5.8E-09 51.9 7.7 63 72-135 18-99 (119)
263 cd03067 PDI_b_PDIR_N PDIb fami 97.7 0.00041 8.8E-09 48.4 7.9 94 62-157 8-111 (112)
264 cd03073 PDI_b'_ERp72_ERp57 PDI 97.7 0.00066 1.4E-08 49.5 9.6 95 59-157 2-110 (111)
265 cd03015 PRX_Typ2cys Peroxiredo 97.6 0.00038 8.3E-09 55.1 8.7 39 72-110 28-67 (173)
266 cd02983 P5_C P5 family, C-term 97.6 0.0012 2.7E-08 49.5 10.7 102 58-160 4-117 (130)
267 PRK10877 protein disulfide iso 97.6 0.00043 9.2E-09 57.5 8.7 79 73-157 107-230 (232)
268 TIGR02739 TraF type-F conjugat 97.6 0.00072 1.6E-08 56.6 9.9 72 178-250 150-236 (256)
269 KOG1672|consensus 97.6 0.00019 4.2E-09 56.2 6.0 83 56-140 66-152 (211)
270 PRK09437 bcp thioredoxin-depen 97.6 0.00064 1.4E-08 52.6 9.0 41 72-112 29-70 (154)
271 PF07449 HyaE: Hydrogenase-1 e 97.6 0.00056 1.2E-08 49.1 7.7 85 162-247 10-100 (107)
272 KOG3425|consensus 97.5 0.00057 1.2E-08 49.3 7.4 70 64-134 13-104 (128)
273 cd02983 P5_C P5 family, C-term 97.5 0.0019 4.1E-08 48.6 10.8 90 162-251 4-104 (130)
274 PF07449 HyaE: Hydrogenase-1 e 97.5 0.00045 9.8E-09 49.6 6.8 79 58-138 11-95 (107)
275 cd03018 PRX_AhpE_like Peroxire 97.5 0.0015 3.2E-08 50.2 10.2 39 179-217 29-68 (149)
276 cd03069 PDI_b_ERp57 PDIb famil 97.5 0.0019 4.1E-08 46.5 10.0 89 62-157 7-103 (104)
277 PRK11200 grxA glutaredoxin 1; 97.5 0.00051 1.1E-08 47.5 6.8 74 77-158 3-83 (85)
278 cd03018 PRX_AhpE_like Peroxire 97.5 0.00062 1.3E-08 52.3 8.0 38 74-111 29-67 (149)
279 TIGR03137 AhpC peroxiredoxin. 97.5 0.00042 9.1E-09 55.6 7.1 38 72-109 30-68 (187)
280 PRK13703 conjugal pilus assemb 97.5 0.0011 2.4E-08 55.1 9.6 72 178-250 143-229 (248)
281 cd00340 GSH_Peroxidase Glutath 97.5 0.00026 5.7E-09 54.8 5.5 39 178-217 22-60 (152)
282 cd02971 PRX_family Peroxiredox 97.4 0.00068 1.5E-08 51.4 7.6 40 72-111 21-61 (140)
283 PRK00522 tpx lipid hydroperoxi 97.4 0.00032 7E-09 55.2 5.9 38 72-111 43-81 (167)
284 PRK11200 grxA glutaredoxin 1; 97.4 0.0007 1.5E-08 46.8 6.9 59 182-242 3-68 (85)
285 TIGR03137 AhpC peroxiredoxin. 97.4 0.0017 3.7E-08 52.1 9.9 66 178-243 31-132 (187)
286 PF00462 Glutaredoxin: Glutare 97.4 0.001 2.2E-08 42.6 6.9 54 182-242 1-59 (60)
287 TIGR03140 AhpF alkyl hydropero 97.4 0.003 6.5E-08 59.0 12.6 133 16-157 60-198 (515)
288 cd02991 UAS_ETEA UAS family, E 97.4 0.0016 3.5E-08 47.8 8.5 87 67-156 11-111 (116)
289 KOG3414|consensus 97.4 0.0011 2.3E-08 48.2 7.1 76 167-243 10-90 (142)
290 cd03014 PRX_Atyp2cys Peroxired 97.3 0.00053 1.1E-08 52.4 5.8 39 72-112 25-64 (143)
291 cd03015 PRX_Typ2cys Peroxiredo 97.3 0.0025 5.3E-08 50.4 9.7 40 178-217 29-69 (173)
292 KOG2603|consensus 97.3 0.0014 3.1E-08 55.2 8.4 102 57-159 41-167 (331)
293 cd03066 PDI_b_Calsequestrin_mi 97.3 0.0069 1.5E-07 43.4 11.0 94 58-157 2-100 (102)
294 PRK09437 bcp thioredoxin-depen 97.3 0.0034 7.3E-08 48.6 9.9 73 177-249 29-140 (154)
295 PLN02399 phospholipid hydroper 97.3 0.00052 1.1E-08 56.9 5.5 41 177-217 98-138 (236)
296 PRK10382 alkyl hydroperoxide r 97.3 0.0014 3.1E-08 52.4 7.8 39 72-110 30-69 (187)
297 TIGR02540 gpx7 putative glutat 97.3 0.00057 1.2E-08 52.9 5.3 40 178-217 22-61 (153)
298 cd03020 DsbA_DsbC_DsbG DsbA fa 97.3 0.0012 2.6E-08 53.4 7.4 74 73-153 77-196 (197)
299 PF11009 DUF2847: Protein of u 97.2 0.0027 5.9E-08 45.3 8.1 77 62-138 6-91 (105)
300 cd02976 NrdH NrdH-redoxin (Nrd 97.2 0.0018 4E-08 42.7 7.0 50 77-131 2-56 (73)
301 PF07912 ERp29_N: ERp29, N-ter 97.2 0.015 3.3E-07 42.4 11.9 96 164-263 7-118 (126)
302 PTZ00256 glutathione peroxidas 97.2 0.00058 1.3E-08 54.6 5.0 42 72-113 39-81 (183)
303 KOG0911|consensus 97.2 0.00037 8E-09 56.1 3.8 79 167-249 8-90 (227)
304 PRK00522 tpx lipid hydroperoxi 97.2 0.0027 5.9E-08 49.9 8.7 38 178-217 44-82 (167)
305 PRK13190 putative peroxiredoxi 97.2 0.0026 5.6E-08 51.7 8.6 83 73-156 27-152 (202)
306 KOG3171|consensus 97.2 0.0015 3.2E-08 52.1 6.8 80 162-243 140-224 (273)
307 PRK10877 protein disulfide iso 97.2 0.0033 7.1E-08 52.2 9.2 68 178-250 107-219 (232)
308 PLN02412 probable glutathione 97.2 0.0008 1.7E-08 53.0 5.2 40 178-217 29-68 (167)
309 cd02971 PRX_family Peroxiredox 97.1 0.0034 7.3E-08 47.5 8.5 41 177-217 21-62 (140)
310 PF00462 Glutaredoxin: Glutare 97.1 0.0022 4.7E-08 41.0 6.3 50 77-131 1-55 (60)
311 cd03069 PDI_b_ERp57 PDIb famil 97.1 0.0073 1.6E-07 43.4 9.6 88 166-261 6-101 (104)
312 cd03419 GRX_GRXh_1_2_like Glut 97.1 0.0019 4.1E-08 44.0 6.1 54 182-242 2-63 (82)
313 PRK10382 alkyl hydroperoxide r 97.1 0.0093 2E-07 47.8 10.6 66 178-243 31-132 (187)
314 cd03419 GRX_GRXh_1_2_like Glut 97.1 0.00063 1.4E-08 46.5 3.4 53 77-136 2-62 (82)
315 PRK15000 peroxidase; Provision 97.1 0.0039 8.5E-08 50.6 8.4 39 72-110 33-72 (200)
316 cd03066 PDI_b_Calsequestrin_mi 97.0 0.012 2.6E-07 42.2 10.0 90 166-263 6-99 (102)
317 TIGR02183 GRXA Glutaredoxin, G 97.0 0.0026 5.7E-08 44.0 5.9 74 77-158 2-82 (86)
318 cd02976 NrdH NrdH-redoxin (Nrd 97.0 0.0032 7E-08 41.5 6.0 50 182-236 2-56 (73)
319 cd03014 PRX_Atyp2cys Peroxired 96.9 0.0026 5.6E-08 48.5 6.2 38 178-217 26-64 (143)
320 cd02991 UAS_ETEA UAS family, E 96.9 0.012 2.6E-07 43.2 9.3 75 174-252 13-103 (116)
321 cd02968 SCO SCO (an acronym fo 96.9 0.0014 3E-08 49.8 4.4 33 72-104 21-54 (142)
322 PF02966 DIM1: Mitosis protein 96.9 0.015 3.2E-07 43.0 9.2 77 167-245 7-89 (133)
323 cd03072 PDI_b'_ERp44 PDIb' fam 96.9 0.012 2.6E-07 42.9 8.7 85 163-250 1-96 (111)
324 TIGR02183 GRXA Glutaredoxin, G 96.8 0.0046 1E-07 42.8 5.8 58 182-241 2-66 (86)
325 TIGR02190 GlrX-dom Glutaredoxi 96.7 0.0064 1.4E-07 41.3 6.0 56 180-242 8-67 (79)
326 PRK13189 peroxiredoxin; Provis 96.7 0.011 2.3E-07 48.8 8.4 38 73-110 35-73 (222)
327 PRK15000 peroxidase; Provision 96.7 0.019 4.1E-07 46.5 9.7 66 178-243 34-138 (200)
328 TIGR02190 GlrX-dom Glutaredoxi 96.7 0.0083 1.8E-07 40.7 6.4 68 74-154 7-78 (79)
329 PRK11657 dsbG disulfide isomer 96.7 0.013 2.9E-07 49.2 9.0 81 73-155 117-249 (251)
330 PTZ00256 glutathione peroxidas 96.6 0.0039 8.4E-08 49.8 5.3 40 178-217 40-80 (183)
331 PHA03050 glutaredoxin; Provisi 96.6 0.013 2.8E-07 42.4 7.4 66 171-242 6-79 (108)
332 cd02066 GRX_family Glutaredoxi 96.6 0.011 2.4E-07 38.6 6.5 54 182-242 2-60 (72)
333 cd02066 GRX_family Glutaredoxi 96.6 0.0083 1.8E-07 39.3 5.8 53 77-136 2-59 (72)
334 PHA03050 glutaredoxin; Provisi 96.5 0.015 3.3E-07 42.1 7.4 62 66-131 6-75 (108)
335 KOG3414|consensus 96.5 0.042 9.1E-07 40.2 9.2 75 63-137 11-89 (142)
336 cd03016 PRX_1cys Peroxiredoxin 96.5 0.017 3.7E-07 47.0 8.4 35 76-110 29-63 (203)
337 cd03020 DsbA_DsbC_DsbG DsbA fa 96.5 0.012 2.7E-07 47.5 7.5 25 178-202 77-101 (197)
338 cd02968 SCO SCO (an acronym fo 96.5 0.0056 1.2E-07 46.5 5.1 41 177-217 21-65 (142)
339 PTZ00137 2-Cys peroxiredoxin; 96.5 0.012 2.6E-07 49.6 7.5 38 73-110 98-136 (261)
340 cd03068 PDI_b_ERp72 PDIb famil 96.5 0.07 1.5E-06 38.5 10.5 94 59-157 3-107 (107)
341 PF05768 DUF836: Glutaredoxin- 96.4 0.03 6.5E-07 38.2 7.9 76 77-155 2-81 (81)
342 PRK13191 putative peroxiredoxi 96.4 0.027 5.9E-07 46.2 8.8 38 73-110 33-71 (215)
343 PRK13190 putative peroxiredoxi 96.4 0.036 7.7E-07 45.0 9.4 65 178-242 27-129 (202)
344 cd03027 GRX_DEP Glutaredoxin ( 96.4 0.012 2.7E-07 39.1 5.6 50 77-131 3-57 (73)
345 PRK13599 putative peroxiredoxi 96.4 0.015 3.2E-07 47.8 7.1 39 73-111 28-67 (215)
346 PTZ00253 tryparedoxin peroxida 96.3 0.031 6.7E-07 45.3 8.6 40 72-111 35-75 (199)
347 PRK10606 btuE putative glutath 96.3 0.0082 1.8E-07 47.9 5.0 39 178-217 25-63 (183)
348 TIGR02194 GlrX_NrdH Glutaredox 96.3 0.019 4.2E-07 38.1 6.1 49 78-131 2-54 (72)
349 KOG3170|consensus 96.3 0.046 1E-06 43.4 8.9 102 160-265 90-201 (240)
350 cd02972 DsbA_family DsbA famil 96.2 0.024 5.2E-07 39.4 6.9 55 182-237 1-90 (98)
351 TIGR02181 GRX_bact Glutaredoxi 96.2 0.018 3.9E-07 38.9 5.9 50 77-131 1-55 (79)
352 TIGR02189 GlrX-like_plant Glut 96.1 0.023 5E-07 40.4 6.3 52 77-135 10-69 (99)
353 cd03027 GRX_DEP Glutaredoxin ( 96.1 0.018 3.9E-07 38.3 5.4 53 182-241 3-60 (73)
354 TIGR02194 GlrX_NrdH Glutaredox 96.1 0.021 4.4E-07 38.0 5.6 49 183-236 2-54 (72)
355 cd03073 PDI_b'_ERp72_ERp57 PDI 96.1 0.086 1.9E-06 38.4 9.3 81 165-249 3-97 (111)
356 cd03418 GRX_GRXb_1_3_like Glut 96.1 0.027 5.8E-07 37.5 6.2 49 77-130 2-56 (75)
357 cd02972 DsbA_family DsbA famil 96.1 0.02 4.3E-07 39.8 5.8 56 77-133 1-91 (98)
358 KOG2640|consensus 96.1 0.0037 8E-08 52.8 2.2 118 73-201 76-197 (319)
359 cd03023 DsbA_Com1_like DsbA fa 96.0 0.013 2.9E-07 44.8 4.9 32 73-104 5-36 (154)
360 PTZ00137 2-Cys peroxiredoxin; 96.0 0.097 2.1E-06 44.2 10.3 66 178-243 98-201 (261)
361 TIGR00365 monothiol glutaredox 95.9 0.047 1E-06 38.7 7.0 60 65-131 4-73 (97)
362 cd03029 GRX_hybridPRX5 Glutare 95.9 0.044 9.6E-07 36.3 6.5 54 182-242 3-60 (72)
363 TIGR02181 GRX_bact Glutaredoxi 95.8 0.011 2.4E-07 40.0 3.4 52 183-241 2-58 (79)
364 TIGR00365 monothiol glutaredox 95.8 0.046 1E-06 38.7 6.8 69 170-249 4-81 (97)
365 KOG2603|consensus 95.8 0.057 1.2E-06 45.9 8.2 111 158-268 37-170 (331)
366 cd03067 PDI_b_PDIR_N PDIb fami 95.8 0.099 2.2E-06 36.7 8.0 91 167-261 8-109 (112)
367 PRK13599 putative peroxiredoxi 95.8 0.091 2E-06 43.1 9.3 65 178-242 28-131 (215)
368 cd03418 GRX_GRXb_1_3_like Glut 95.8 0.032 6.8E-07 37.2 5.5 54 182-242 2-61 (75)
369 cd03029 GRX_hybridPRX5 Glutare 95.7 0.054 1.2E-06 35.8 6.5 65 77-154 3-71 (72)
370 PRK11657 dsbG disulfide isomer 95.7 0.1 2.2E-06 44.0 9.5 70 178-250 117-240 (251)
371 PF02966 DIM1: Mitosis protein 95.6 0.32 6.9E-06 36.1 10.5 74 62-137 7-86 (133)
372 PRK10329 glutaredoxin-like pro 95.6 0.043 9.2E-07 37.5 5.7 50 77-131 3-56 (81)
373 TIGR02189 GlrX-like_plant Glut 95.6 0.024 5.2E-07 40.4 4.6 54 182-242 10-71 (99)
374 PF13743 Thioredoxin_5: Thiore 95.4 0.048 1E-06 43.3 6.1 32 79-110 2-34 (176)
375 PRK13189 peroxiredoxin; Provis 95.4 0.15 3.1E-06 42.1 9.1 65 178-242 35-138 (222)
376 cd03068 PDI_b_ERp72 PDIb famil 95.3 0.53 1.2E-05 33.9 10.9 91 165-261 5-105 (107)
377 PRK10638 glutaredoxin 3; Provi 95.2 0.089 1.9E-06 35.9 6.3 50 77-131 4-58 (83)
378 PRK10329 glutaredoxin-like pro 95.2 0.07 1.5E-06 36.4 5.6 48 182-236 3-56 (81)
379 PRK13191 putative peroxiredoxi 95.2 0.21 4.6E-06 41.0 9.5 40 178-217 33-73 (215)
380 cd03016 PRX_1cys Peroxiredoxin 95.0 0.2 4.4E-06 40.7 8.8 38 180-217 28-65 (203)
381 cd03028 GRX_PICOT_like Glutare 95.0 0.13 2.8E-06 35.8 6.6 48 188-242 21-73 (90)
382 PTZ00253 tryparedoxin peroxida 94.9 0.16 3.4E-06 41.2 7.9 40 178-217 36-76 (199)
383 PRK10638 glutaredoxin 3; Provi 94.9 0.11 2.3E-06 35.5 6.0 53 182-241 4-61 (83)
384 KOG3171|consensus 94.9 0.13 2.8E-06 41.3 7.0 80 56-137 138-223 (273)
385 cd03023 DsbA_Com1_like DsbA fa 94.6 0.077 1.7E-06 40.5 5.2 31 178-208 5-35 (154)
386 COG0695 GrxC Glutaredoxin and 94.6 0.068 1.5E-06 36.4 4.2 56 182-241 3-62 (80)
387 COG0695 GrxC Glutaredoxin and 94.4 0.21 4.5E-06 34.0 6.4 50 77-131 3-59 (80)
388 cd03028 GRX_PICOT_like Glutare 94.4 0.15 3.2E-06 35.5 5.7 47 83-136 21-72 (90)
389 PRK10824 glutaredoxin-4; Provi 94.1 0.17 3.7E-06 37.0 5.7 66 170-243 7-81 (115)
390 KOG3170|consensus 94.1 0.58 1.3E-05 37.3 8.9 98 57-156 92-199 (240)
391 PF05768 DUF836: Glutaredoxin- 94.1 0.2 4.3E-06 34.1 5.7 53 182-236 2-55 (81)
392 PRK10824 glutaredoxin-4; Provi 93.9 0.46 1E-05 34.7 7.5 60 65-131 7-76 (115)
393 cd03019 DsbA_DsbA DsbA family, 93.5 0.16 3.4E-06 40.0 5.0 31 72-102 14-44 (178)
394 cd03019 DsbA_DsbA DsbA family, 93.2 0.18 3.8E-06 39.7 4.9 40 177-217 14-53 (178)
395 cd03013 PRX5_like Peroxiredoxi 92.7 0.23 4.9E-06 38.5 4.7 54 74-127 30-93 (155)
396 KOG1752|consensus 92.4 0.64 1.4E-05 33.3 6.3 59 66-131 7-73 (104)
397 PF13462 Thioredoxin_4: Thiore 92.4 0.33 7.1E-06 37.4 5.3 39 73-111 12-51 (162)
398 PF13462 Thioredoxin_4: Thiore 92.2 0.48 1E-05 36.5 6.1 39 178-217 12-52 (162)
399 COG1331 Highly conserved prote 91.6 0.66 1.4E-05 44.0 7.0 90 153-243 17-122 (667)
400 COG1331 Highly conserved prote 91.4 0.87 1.9E-05 43.2 7.6 76 61-137 31-121 (667)
401 KOG1752|consensus 91.0 2.5 5.5E-05 30.3 8.1 67 171-249 7-81 (104)
402 PRK12759 bifunctional gluaredo 90.7 0.7 1.5E-05 41.9 6.3 50 77-131 4-66 (410)
403 PRK10954 periplasmic protein d 90.3 0.44 9.6E-06 38.8 4.3 38 73-111 37-77 (207)
404 KOG2640|consensus 90.3 0.15 3.2E-06 43.5 1.4 83 178-264 76-162 (319)
405 COG1225 Bcp Peroxiredoxin [Pos 89.5 1.1 2.4E-05 34.6 5.6 55 72-127 29-90 (157)
406 PHA03075 glutaredoxin-like pro 88.4 0.46 1E-05 34.3 2.6 39 179-217 2-40 (123)
407 PRK10954 periplasmic protein d 88.3 0.73 1.6E-05 37.5 4.2 39 178-217 37-78 (207)
408 COG1225 Bcp Peroxiredoxin [Pos 88.0 1.5 3.3E-05 33.9 5.4 40 178-217 30-70 (157)
409 cd03013 PRX5_like Peroxiredoxi 87.8 1.1 2.3E-05 34.7 4.6 51 178-228 29-88 (155)
410 cd03060 GST_N_Omega_like GST_N 87.8 3.4 7.3E-05 26.9 6.5 48 78-130 2-53 (71)
411 cd02974 AhpF_NTD_N Alkyl hydro 87.6 6 0.00013 27.7 7.9 70 74-155 20-91 (94)
412 PRK12759 bifunctional gluaredo 87.0 1.6 3.4E-05 39.7 5.9 53 182-241 4-69 (410)
413 COG3019 Predicted metal-bindin 86.6 1.5 3.2E-05 32.9 4.5 74 75-158 26-104 (149)
414 PHA03075 glutaredoxin-like pro 84.2 1.6 3.6E-05 31.5 3.6 30 74-103 2-31 (123)
415 cd03060 GST_N_Omega_like GST_N 84.0 3.6 7.8E-05 26.7 5.2 53 183-241 2-58 (71)
416 COG4545 Glutaredoxin-related p 82.8 3.2 7E-05 27.5 4.2 55 183-243 5-76 (85)
417 cd03051 GST_N_GTT2_like GST_N 82.4 2.7 5.8E-05 27.3 4.1 54 183-236 2-57 (74)
418 PF09673 TrbC_Ftype: Type-F co 80.2 20 0.00043 26.0 9.2 22 218-239 59-80 (113)
419 PF13743 Thioredoxin_5: Thiore 79.6 4 8.6E-05 32.3 4.8 33 184-217 2-34 (176)
420 cd03031 GRX_GRX_like Glutaredo 79.2 6.6 0.00014 30.1 5.7 22 77-98 2-29 (147)
421 cd03041 GST_N_2GST_N GST_N fam 78.9 2.9 6.4E-05 27.8 3.3 70 77-157 2-76 (77)
422 TIGR02742 TrbC_Ftype type-F co 77.6 4.6 9.9E-05 30.2 4.2 41 219-261 60-112 (130)
423 cd03045 GST_N_Delta_Epsilon GS 77.4 3.3 7.1E-05 27.0 3.2 51 183-236 2-57 (74)
424 cd02977 ArsC_family Arsenate R 77.1 2.1 4.5E-05 30.5 2.3 25 183-207 2-26 (105)
425 cd03035 ArsC_Yffb Arsenate Red 76.1 2.3 5E-05 30.5 2.3 22 183-204 2-23 (105)
426 cd03031 GRX_GRX_like Glutaredo 75.5 8.9 0.00019 29.4 5.4 52 183-241 3-69 (147)
427 PF00837 T4_deiodinase: Iodoth 75.0 3.5 7.7E-05 34.1 3.3 56 161-217 82-140 (237)
428 cd03051 GST_N_GTT2_like GST_N 74.6 5.7 0.00012 25.6 3.8 49 78-131 2-57 (74)
429 cd02974 AhpF_NTD_N Alkyl hydro 74.1 27 0.00059 24.4 9.0 61 178-249 18-81 (94)
430 cd02978 KaiB_like KaiB-like fa 74.0 18 0.00039 24.0 5.8 56 181-236 3-61 (72)
431 cd00570 GST_N_family Glutathio 73.8 4.1 8.9E-05 25.5 2.9 48 184-236 3-55 (71)
432 cd03035 ArsC_Yffb Arsenate Red 73.6 3.6 7.9E-05 29.5 2.8 21 78-98 2-22 (105)
433 cd02977 ArsC_family Arsenate R 73.3 3.7 8E-05 29.2 2.8 21 78-98 2-22 (105)
434 PRK09301 circadian clock prote 73.2 16 0.00036 26.0 5.9 77 74-150 6-85 (103)
435 PRK09301 circadian clock prote 73.0 25 0.00053 25.1 6.7 76 180-255 7-85 (103)
436 cd00570 GST_N_family Glutathio 73.0 4.1 8.8E-05 25.6 2.7 49 78-131 2-55 (71)
437 cd03059 GST_N_SspA GST_N famil 72.9 17 0.00037 23.3 5.8 66 78-156 2-71 (73)
438 TIGR02654 circ_KaiB circadian 72.3 27 0.00059 24.1 6.6 75 181-255 5-82 (87)
439 COG3531 Predicted protein-disu 72.1 6.3 0.00014 31.6 3.9 43 115-157 164-208 (212)
440 PF13417 GST_N_3: Glutathione 71.3 26 0.00056 22.9 7.8 68 79-159 1-72 (75)
441 PF09673 TrbC_Ftype: Type-F co 71.0 12 0.00026 27.2 5.0 44 90-134 36-80 (113)
442 TIGR02654 circ_KaiB circadian 70.5 20 0.00043 24.7 5.6 73 75-147 4-79 (87)
443 cd02978 KaiB_like KaiB-like fa 70.0 18 0.00038 24.0 5.1 56 76-131 3-61 (72)
444 cd03041 GST_N_2GST_N GST_N fam 69.9 4.6 9.9E-05 26.8 2.5 49 183-236 3-56 (77)
445 cd03045 GST_N_Delta_Epsilon GS 69.8 25 0.00055 22.6 6.1 48 78-130 2-56 (74)
446 cd03059 GST_N_SspA GST_N famil 69.4 12 0.00025 24.2 4.4 48 183-235 2-53 (73)
447 COG4545 Glutaredoxin-related p 69.1 4.8 0.0001 26.7 2.2 22 78-99 5-26 (85)
448 PRK01655 spxA transcriptional 68.3 5.4 0.00012 29.8 2.8 25 182-206 2-26 (131)
449 cd03036 ArsC_like Arsenate Red 67.4 4.8 0.0001 29.1 2.3 22 183-204 2-23 (111)
450 cd03040 GST_N_mPGES2 GST_N fam 66.6 33 0.00071 22.3 6.5 71 77-158 2-76 (77)
451 COG3634 AhpF Alkyl hydroperoxi 65.9 99 0.0022 27.6 14.9 153 74-241 19-178 (520)
452 PRK01655 spxA transcriptional 65.6 8.1 0.00018 28.9 3.3 22 77-98 2-23 (131)
453 PRK12559 transcriptional regul 65.5 6.1 0.00013 29.6 2.6 25 182-206 2-26 (131)
454 cd03036 ArsC_like Arsenate Red 65.1 4.1 8.8E-05 29.5 1.5 21 78-98 2-22 (111)
455 TIGR02742 TrbC_Ftype type-F co 64.5 13 0.00028 27.8 4.1 23 114-136 60-82 (130)
456 cd03040 GST_N_mPGES2 GST_N fam 63.6 20 0.00042 23.5 4.6 50 182-237 2-54 (77)
457 cd03032 ArsC_Spx Arsenate Redu 63.6 7.6 0.00017 28.2 2.8 23 182-204 2-24 (115)
458 TIGR01617 arsC_related transcr 61.6 7 0.00015 28.5 2.3 21 183-203 2-22 (117)
459 PRK12559 transcriptional regul 60.8 11 0.00024 28.2 3.3 22 77-98 2-23 (131)
460 cd03037 GST_N_GRX2 GST_N famil 60.6 34 0.00074 21.9 5.3 65 79-155 3-70 (71)
461 PF01323 DSBA: DSBA-like thior 59.1 17 0.00036 28.7 4.3 34 77-110 2-35 (193)
462 COG3531 Predicted protein-disu 59.0 17 0.00036 29.2 4.0 27 220-246 164-190 (212)
463 TIGR01617 arsC_related transcr 58.7 10 0.00022 27.6 2.7 21 78-98 2-22 (117)
464 PF02630 SCO1-SenC: SCO1/SenC; 58.5 29 0.00062 27.3 5.4 31 72-102 51-82 (174)
465 cd03055 GST_N_Omega GST_N fami 58.1 56 0.0012 22.2 6.6 51 76-131 18-72 (89)
466 cd03074 PDI_b'_Calsequestrin_C 58.0 69 0.0015 23.1 10.5 100 58-157 3-119 (120)
467 cd03032 ArsC_Spx Arsenate Redu 57.0 15 0.00032 26.7 3.3 22 77-98 2-23 (115)
468 COG1393 ArsC Arsenate reductas 56.5 12 0.00026 27.4 2.7 27 182-208 3-29 (117)
469 cd03056 GST_N_4 GST_N family, 55.9 18 0.00038 23.2 3.3 53 184-236 3-57 (73)
470 PF01323 DSBA: DSBA-like thior 55.3 27 0.00059 27.4 5.0 36 182-217 2-37 (193)
471 COG1651 DsbG Protein-disulfide 55.2 23 0.00049 29.4 4.6 30 74-103 85-114 (244)
472 PRK13344 spxA transcriptional 55.1 13 0.00028 27.9 2.7 23 182-204 2-24 (132)
473 cd03033 ArsC_15kD Arsenate Red 55.1 14 0.0003 26.9 2.8 24 183-206 3-26 (113)
474 cd03055 GST_N_Omega GST_N fami 54.3 26 0.00056 23.9 4.0 50 182-236 19-72 (89)
475 COG1999 Uncharacterized protei 54.0 68 0.0015 26.0 7.1 52 72-123 66-127 (207)
476 cd03070 PDI_b_ERp44 PDIb famil 52.6 77 0.0017 22.1 7.2 79 168-252 7-87 (91)
477 COG3019 Predicted metal-bindin 52.0 41 0.0009 25.4 4.9 73 181-265 27-104 (149)
478 PRK13344 spxA transcriptional 50.6 20 0.00044 26.8 3.2 21 77-97 2-22 (132)
479 PF06491 Disulph_isomer: Disul 48.9 1.1E+02 0.0024 22.9 9.8 95 149-246 4-111 (136)
480 PRK13730 conjugal transfer pil 48.5 81 0.0018 25.6 6.3 36 218-253 150-185 (212)
481 cd03052 GST_N_GDAP1 GST_N fami 47.4 42 0.00091 21.9 4.1 52 183-241 2-60 (73)
482 KOG2792|consensus 47.3 1.2E+02 0.0027 25.5 7.4 41 73-113 139-185 (280)
483 PF13417 GST_N_3: Glutathione 47.0 78 0.0017 20.5 9.7 66 184-263 1-70 (75)
484 KOG2507|consensus 47.0 1.1E+02 0.0025 27.7 7.6 87 72-159 17-112 (506)
485 PF06053 DUF929: Domain of unk 45.9 63 0.0014 27.2 5.6 61 174-239 54-114 (249)
486 PF04592 SelP_N: Selenoprotein 45.6 42 0.0009 27.8 4.4 42 72-113 25-69 (238)
487 cd03033 ArsC_15kD Arsenate Red 45.6 29 0.00064 25.1 3.3 22 77-98 2-23 (113)
488 cd03025 DsbA_FrnE_like DsbA fa 45.6 26 0.00056 27.6 3.3 27 182-208 3-29 (193)
489 PF02630 SCO1-SenC: SCO1/SenC; 44.2 75 0.0016 24.9 5.7 50 177-226 51-109 (174)
490 cd03025 DsbA_FrnE_like DsbA fa 43.5 21 0.00045 28.2 2.5 26 77-102 3-28 (193)
491 COG1550 Uncharacterized protei 42.6 75 0.0016 22.1 4.6 46 78-123 8-54 (95)
492 COG1393 ArsC Arsenate reductas 41.4 36 0.00077 24.9 3.2 22 77-98 3-24 (117)
493 COG1651 DsbG Protein-disulfide 40.7 64 0.0014 26.6 5.1 28 179-206 85-112 (244)
494 PF06053 DUF929: Domain of unk 40.6 76 0.0017 26.7 5.4 60 69-134 54-114 (249)
495 cd03053 GST_N_Phi GST_N family 40.4 51 0.0011 21.3 3.7 53 183-235 3-57 (76)
496 TIGR00014 arsC arsenate reduct 39.8 26 0.00055 25.4 2.3 22 183-204 2-23 (114)
497 cd03034 ArsC_ArsC Arsenate Red 39.0 27 0.00058 25.2 2.3 22 183-204 2-23 (112)
498 PF07689 KaiB: KaiB domain; I 38.7 19 0.00041 24.5 1.3 53 79-131 2-57 (82)
499 PF00837 T4_deiodinase: Iodoth 37.6 59 0.0013 27.0 4.2 61 53-113 79-143 (237)
500 COG1999 Uncharacterized protei 36.4 2.3E+02 0.005 23.0 7.5 61 177-237 66-137 (207)
No 1
>KOG0190|consensus
Probab=100.00 E-value=2.5e-38 Score=279.18 Aligned_cols=208 Identities=18% Similarity=0.385 Sum_probs=179.8
Q ss_pred HHhhcCCCcccccceeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC--CCcEEEEeC---ChhHH
Q psy159 44 TWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA---DPRYA 118 (285)
Q Consensus 44 ~fi~~~~~p~~~~~v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~--~~v~~~~~~---~~~l~ 118 (285)
.++.....|..++.|.+||.+||+..+..+..++|.||||||+||++++|.|+++|+.++. ..+.++++| +.++|
T Consensus 13 ~~~~~a~~~~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~ 92 (493)
T KOG0190|consen 13 ASSEAASVPKAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLA 92 (493)
T ss_pred hhhhhhhcCCcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhH
Confidence 3444444444577899999999999999999999999999999999999999999999954 469999999 78999
Q ss_pred hhhCCCCCCeEEEEccccc-eeecCCCchhHHHHHHHhhhc---------------------------------------
Q psy159 119 RKWGVTKLPAVVYFRHRFP-SIYRGDLSEEEEVLQWLITQK--------------------------------------- 158 (285)
Q Consensus 119 ~~~~i~~~Ptl~~~~~g~~-~~y~g~~~~~~~l~~fi~~~~--------------------------------------- 158 (285)
.+|+|++|||+.+|++|+. ..|+|.|..+ +|+.|+.++.
T Consensus 93 ~~y~v~gyPTlkiFrnG~~~~~Y~G~r~ad-gIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~ 171 (493)
T KOG0190|consen 93 SKYEVRGYPTLKIFRNGRSAQDYNGPREAD-GIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFF 171 (493)
T ss_pred hhhcCCCCCeEEEEecCCcceeccCcccHH-HHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHH
Confidence 9999999999999999995 9999999996 9999999853
Q ss_pred --------------------------------------------------------------------------------
Q psy159 159 -------------------------------------------------------------------------------- 158 (285)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (285)
T Consensus 172 ~~a~~l~~d~~F~~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~ 251 (493)
T KOG0190|consen 172 DAASKLRDDYKFAHTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIY 251 (493)
T ss_pred HHHHhccccceeeccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceee
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy159 159 -------------------------------------------------------------------------------- 158 (285)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (285)
T Consensus 252 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e 331 (493)
T KOG0190|consen 252 SSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPESFARVLEFFGLEEEQLPIRAVILNEDGSKYPLEEE 331 (493)
T ss_pred ccccccceeEEeccccccHHHHHHHHHHHHHhcccceEEEEEChHHhhHHHHhcCcccccCCeeEEeeccccccccCccc
Confidence
Q ss_pred -------------------------------c-ccccccccHHHHHHH-HHhCCeEEEEEECCCChhhHHHHHHHHHHHh
Q psy159 159 -------------------------------T-EDRIELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDD 205 (285)
Q Consensus 159 -------------------------------~-~~~v~~~~~~~~~~~-~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~ 205 (285)
+ ..+++.+.+++|+++ +.+++.++|.||||||+||+++.|+|++||+
T Consensus 332 ~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe 411 (493)
T KOG0190|consen 332 ELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAE 411 (493)
T ss_pred cccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHH
Confidence 1 257889999999997 5569999999999999999999999999999
Q ss_pred hcCcC-CeEEEEE--cChHHHHhcCCcccCeEEEEeCCe---EEEEecCCccch
Q psy159 206 ECDIY-GIHMVKI--QDPQLAKRYSIKTFPALVYFRNGN---PLIFEGENKILK 253 (285)
Q Consensus 206 ~~~~~-~i~~~~i--~~~~~~~~~~v~~~Ptl~~~~~g~---~~~y~g~~~~e~ 253 (285)
.+++. ++.|++| ...++ ....+.+||||++++.|. ++.|+|+|+.++
T Consensus 412 ~~~~~~~vviAKmDaTaNd~-~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~ 464 (493)
T KOG0190|consen 412 KYKDDENVVIAKMDATANDV-PSLKVDGFPTILFFPAGHKSNPVIYNGDRTLED 464 (493)
T ss_pred HhcCCCCcEEEEeccccccC-ccccccccceEEEecCCCCCCCcccCCCcchHH
Confidence 99985 6999999 33333 345788899999999774 779999997554
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=99.97 E-value=5.6e-29 Score=228.53 Aligned_cols=206 Identities=16% Similarity=0.371 Sum_probs=170.9
Q ss_pred ccceeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcC--CCCcEEEEeC---ChhHHhhhCCCCCCeE
Q psy159 55 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETD--NMDITFVKMA---DPRYARKWGVTKLPAV 129 (285)
Q Consensus 55 ~~~v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~--~~~v~~~~~~---~~~l~~~~~i~~~Ptl 129 (285)
+..+..++.++|+..+.+++.++|.|||+||++|+++.|.|+++++.+. ..++.++.+| +..+|++|+|.++||+
T Consensus 31 ~~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 31 SEHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 4568999999999999888999999999999999999999999998883 3358888887 7899999999999999
Q ss_pred EEEccccceeecCCCchhHHHHHHHhhhc---------------------------------------------------
Q psy159 130 VYFRHRFPSIYRGDLSEEEEVLQWLITQK--------------------------------------------------- 158 (285)
Q Consensus 130 ~~~~~g~~~~y~g~~~~~~~l~~fi~~~~--------------------------------------------------- 158 (285)
++|++|....|.|.++.+ +|++|+.+..
T Consensus 111 ~~~~~g~~~~y~g~~~~~-~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~ 189 (477)
T PTZ00102 111 KFFNKGNPVNYSGGRTAD-GIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAK 189 (477)
T ss_pred EEEECCceEEecCCCCHH-HHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccce
Confidence 999999878999998775 7888876531
Q ss_pred --------------------------------------------------------------------------------
Q psy159 159 -------------------------------------------------------------------------------- 158 (285)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (285)
T Consensus 190 F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (477)
T PTZ00102 190 FFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCGTTEDYDKYKSVV 269 (477)
T ss_pred EEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEecCHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy159 159 -------------------------------------------------------------------------------- 158 (285)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (285)
T Consensus 270 ~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~~~~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se 349 (477)
T PTZ00102 270 RKVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSE 349 (477)
T ss_pred HHHHHhccCceEEEEEechhcchhHHHhcCcccCceEEEEcCCcccCCCccccccCCHHHHHHHHHHHhCCCCCcccccC
Confidence
Q ss_pred -----cccccccccHHHHHHH-HHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcC-CeEEEEE---cChHHHHhcCC
Q psy159 159 -----TEDRIELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI---QDPQLAKRYSI 228 (285)
Q Consensus 159 -----~~~~v~~~~~~~~~~~-~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i---~~~~~~~~~~v 228 (285)
....+..+++++|++. ++++++++|.|||+||++|+.+.|.|+++++.+++. .+.++.+ .+...++.+++
T Consensus 350 ~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v 429 (477)
T PTZ00102 350 PIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSW 429 (477)
T ss_pred CCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCC
Confidence 0123556778889887 566889999999999999999999999999998752 4788888 46667899999
Q ss_pred cccCeEEEEeCCeE--EEEecCCccchhHHHHHhhhc
Q psy159 229 KTFPALVYFRNGNP--LIFEGENKILKGTYIGTYIST 263 (285)
Q Consensus 229 ~~~Ptl~~~~~g~~--~~y~g~~~~e~~~~~~~~~~~ 263 (285)
+++||+++|++|+. ..|.|.++.+ .+..|+.+.
T Consensus 430 ~~~Pt~~~~~~~~~~~~~~~G~~~~~--~l~~~i~~~ 464 (477)
T PTZ00102 430 SAFPTILFVKAGERTPIPYEGERTVE--GFKEFVNKH 464 (477)
T ss_pred cccCeEEEEECCCcceeEecCcCCHH--HHHHHHHHc
Confidence 99999999998864 4899988633 345554443
No 3
>KOG0191|consensus
Probab=99.96 E-value=5.9e-28 Score=215.01 Aligned_cols=205 Identities=19% Similarity=0.312 Sum_probs=166.9
Q ss_pred eeecChhHH-HHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEc
Q psy159 58 IEEVNRRML-DKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 58 v~~l~~~~f-~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 133 (285)
...++..+| ...+..+.+++|.||+|||+||+++.|.|.++++.+++ .+.++.+| ++.+|++|+|+++||+.+|.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~ 109 (383)
T KOG0191|consen 31 VSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFR 109 (383)
T ss_pred hhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCccCcEEEEEc
Confidence 444444444 44567788999999999999999999999999999976 47888888 88999999999999999999
Q ss_pred cc-cceeecCCCchhHHHHHHHhhhccc------cc-cccccHHHHHHHH-HhCCeEEEEEECCCChhhHHHHHHHHHHH
Q psy159 134 HR-FPSIYRGDLSEEEEVLQWLITQKTE------DR-IELITRVMLETMV-EETQYLAVYFYKLNCNICDQILEGLEKVD 204 (285)
Q Consensus 134 ~g-~~~~y~g~~~~~~~l~~fi~~~~~~------~~-v~~~~~~~~~~~~-~~~~~~~v~F~a~~c~~c~~~~~~~~~la 204 (285)
+| .++.|.|.++.+ .+.+|+.....+ .. +..++..+++... ..+.+++|.||+|||+||+.+.|.|++++
T Consensus 110 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a 188 (383)
T KOG0191|consen 110 PGKKPIDYSGPRNAE-SLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLA 188 (383)
T ss_pred CCCceeeccCcccHH-HHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHH
Confidence 99 568899988886 899999887642 23 5566777787754 45888999999999999999999999999
Q ss_pred hhcCc-CCeEEEEEc---ChHHHHhcCCcccCeEEEEeCCeE-E-EEecCCccchhHHHHHhhhcCCC
Q psy159 205 DECDI-YGIHMVKIQ---DPQLAKRYSIKTFPALVYFRNGNP-L-IFEGENKILKGTYIGTYISTKAF 266 (285)
Q Consensus 205 ~~~~~-~~i~~~~i~---~~~~~~~~~v~~~Ptl~~~~~g~~-~-~y~g~~~~e~~~~~~~~~~~~~~ 266 (285)
..++. ..+.++.++ ...++..++|+++|++.+|+.|.. . .|.|.++.+ .+..|+.+....
T Consensus 189 ~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~--~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 189 KLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSD--SIVSFVEKKERR 254 (383)
T ss_pred HHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHH--HHHHHHHhhcCC
Confidence 99873 367888774 678999999999999999998876 4 556777533 367777665554
No 4
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.95 E-value=3.8e-26 Score=187.65 Aligned_cols=191 Identities=16% Similarity=0.239 Sum_probs=145.9
Q ss_pred hhHHHHHHhcCCcEEEEEeC---CCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEcccc
Q psy159 63 RRMLDKLLEENEFVTVFFYE---TDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF 136 (285)
Q Consensus 63 ~~~f~~~~~~~~~~lv~Fya---~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~ 136 (285)
.+.|.+.+.++ ..++.|++ +||++|+.+.|.++++++.+++..+.++.+| +++++++|+|.++||+++|++|+
T Consensus 10 ~~~~~~~~~~~-~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 10 KELFLKELKNP-VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred HHHHHHhcCCC-eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe
Confidence 34444444444 34667888 9999999999999999999865557788876 78999999999999999999998
Q ss_pred ce--eecCCCchhHHHHHHHhhhcc-ccccccccHHHHHHHHHhCCe-EEEEEECCCChhhHHHHHHHHHHHhhcCcCCe
Q psy159 137 PS--IYRGDLSEEEEVLQWLITQKT-EDRIELITRVMLETMVEETQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGI 212 (285)
Q Consensus 137 ~~--~y~g~~~~~~~l~~fi~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i 212 (285)
.. .+.|..... ++.+|+....+ ......++.+..+.+...+++ .++.|+++||++|+.+.+.+++++.+.. ++
T Consensus 89 ~~~~~~~G~~~~~-~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i 165 (215)
T TIGR02187 89 DGGIRYTGIPAGY-EFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KI 165 (215)
T ss_pred eeEEEEeecCCHH-HHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ce
Confidence 74 688987765 78888887653 223345666666555444555 4555999999999999999999998753 57
Q ss_pred EEEEE---cChHHHHhcCCcccCeEEEEeCCeEEEEecCCccchhHHHHHhh
Q psy159 213 HMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILKGTYIGTYI 261 (285)
Q Consensus 213 ~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g~~~~e~~~~~~~~~ 261 (285)
.+..+ .++.++++|+|.++||++++++|+. +.|... ...+..|+.
T Consensus 166 ~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~--~~G~~~--~~~l~~~l~ 213 (215)
T TIGR02187 166 LGEMIEANENPDLAEKYGVMSVPKIVINKGVEE--FVGAYP--EEQFLEYIL 213 (215)
T ss_pred EEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE--EECCCC--HHHHHHHHH
Confidence 77777 7888999999999999999988863 788664 223445543
No 5
>KOG0191|consensus
Probab=99.94 E-value=3.9e-26 Score=203.35 Aligned_cols=237 Identities=17% Similarity=0.256 Sum_probs=184.9
Q ss_pred ccchHHHHHcCCCCCCeEEEeecC-ccccccCCCcchHHHHHHhhcCCCc---ccccc-eeecChhHHHHHH-hcCCcEE
Q psy159 4 ISDTEAAAKYNIINLPSLVYFRKQ-VPLLYDGDLFDEEKILTWLTSQDVF---EIKNE-IEEVNRRMLDKLL-EENEFVT 77 (285)
Q Consensus 4 ~~~~~~~~~~~i~~~Ptl~~~~~~-~~~~y~g~~~~~~~i~~fi~~~~~p---~~~~~-v~~l~~~~f~~~~-~~~~~~l 77 (285)
..++++|++|+|.+|||+.+|+.| .++.|.|..+.. .+..|......+ ..... +.+++..+|+..+ ..+..|+
T Consensus 88 ~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~l 166 (383)
T KOG0191|consen 88 DEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAE-SLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWL 166 (383)
T ss_pred hhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHH-HHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceE
Confidence 467899999999999999999999 678899976666 888887654332 22344 8899999999876 4567899
Q ss_pred EEEeCCCChhHHHHHHHHHhHHhhcC-CCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccc--eeecCCCchhHHHH
Q psy159 78 VFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP--SIYRGDLSEEEEVL 151 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~a~~~~-~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~--~~y~g~~~~~~~l~ 151 (285)
|.||+|||+||+.++|.|+++++.++ ...+.++.+| ...+|.+++|.++||+.+|++|.. ..|.|.|+.+ .++
T Consensus 167 v~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~-~i~ 245 (383)
T KOG0191|consen 167 VEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSD-SIV 245 (383)
T ss_pred EEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHH-HHH
Confidence 99999999999999999999999885 3558888888 679999999999999999998876 5577778775 999
Q ss_pred HHHhhhcccc-----ccccccH----------HHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhh-cCc-CCeEE
Q psy159 152 QWLITQKTED-----RIELITR----------VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDE-CDI-YGIHM 214 (285)
Q Consensus 152 ~fi~~~~~~~-----~v~~~~~----------~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~-~~~-~~i~~ 214 (285)
+|+.+..... .....+. +++..........++.|+++||++|....|.++..+.. +.. ..+.+
T Consensus 246 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (383)
T KOG0191|consen 246 SFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKA 325 (383)
T ss_pred HHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchhhcccccchhHHHHHhcccccccccee
Confidence 9999876531 1111111 11111222345678999999999999999999999888 111 14666
Q ss_pred EEE---cChHHHHhcCCcccCeEEEEeCCeE
Q psy159 215 VKI---QDPQLAKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 215 ~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~ 242 (285)
.++ ....+|....++.+|++.+++.|..
T Consensus 326 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (383)
T KOG0191|consen 326 AKLDCALLKSLCQKAIVRGYPTIKLYNYGKN 356 (383)
T ss_pred eccccccccchhhHhhhhcCceeEeeccccc
Confidence 666 3444889999999999999987753
No 6
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.91 E-value=8.9e-23 Score=186.69 Aligned_cols=219 Identities=18% Similarity=0.262 Sum_probs=173.3
Q ss_pred ceeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCC--CcEEEEeC---ChhHHhhhCCCCCCeEEE
Q psy159 57 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA---DPRYARKWGVTKLPAVVY 131 (285)
Q Consensus 57 ~v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~--~v~~~~~~---~~~l~~~~~i~~~Ptl~~ 131 (285)
.|.++|.++|+.++.+++.++|.|||+||++|+++.|.|.++|+.+... ++.++.+| ++.+|++++|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 4788999999999999999999999999999999999999999988443 48888887 678999999999999999
Q ss_pred Eccccc--eeecCCCchhHHHHHHHhhhccccccccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCc
Q psy159 132 FRHRFP--SIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI 209 (285)
Q Consensus 132 ~~~g~~--~~y~g~~~~~~~l~~fi~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~ 209 (285)
|++|+. ..|.|.++.. ++.+|+.+...++.....+.++++.++..+...+|.|+... . ......+.++|..+..
T Consensus 82 ~~~g~~~~~~~~g~~~~~-~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~-~--~~~~~~~~~~a~~~~~ 157 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDAD-GIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDL-D--SELNDTFLSVAEKLRD 157 (462)
T ss_pred EeCCccceeEecCCCCHH-HHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCC-C--cHHHHHHHHHHHHhhh
Confidence 999886 7899999886 99999999998777766678899999888777778877542 1 3667788889988875
Q ss_pred CCeE-EEEEcChHHHHhcCCcccCeEEEEeCC-e---EEEEecCCccchhHHHHHhhhcCCCCCCCCCCCCCCCCccc
Q psy159 210 YGIH-MVKIQDPQLAKRYSIKTFPALVYFRNG-N---PLIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGAFQ 282 (285)
Q Consensus 210 ~~i~-~~~i~~~~~~~~~~v~~~Ptl~~~~~g-~---~~~y~g~~~~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 282 (285)
... ++...+..+...++.. -|++++++.. . ...|.|....+.+. +..|+....+|.+++++.++....+.
T Consensus 158 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~fi~~~~~p~v~~~~~~~~~~~~~ 232 (462)
T TIGR01130 158 -VYFFFAHSSDVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSD-LEKFIRAESLPLVGEFTQETAAKYFE 232 (462)
T ss_pred -ccceEEecCCHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHH-HHHHHHHcCCCceEeeCCcchhhHhC
Confidence 343 4444566777777765 3566666432 1 13677876544343 77788889999999999887665543
No 7
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.90 E-value=7.1e-22 Score=180.74 Aligned_cols=251 Identities=16% Similarity=0.265 Sum_probs=189.4
Q ss_pred ccchHHHHHcCCCCCCeEEEeecC----ccccccCCCcc-hHHHHHHhhcCCCcccccceeecChhHHHHHHhcCCcEEE
Q psy159 4 ISDTEAAAKYNIINLPSLVYFRKQ----VPLLYDGDLFD-EEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTV 78 (285)
Q Consensus 4 ~~~~~~~~~~~i~~~Ptl~~~~~~----~~~~y~g~~~~-~~~i~~fi~~~~~p~~~~~v~~l~~~~f~~~~~~~~~~lv 78 (285)
+.+..+...+++. -|++++|+.. ....|.|.... .+.|.+|+.....|. +.++|.+++..+...+ +.++
T Consensus 165 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~----v~~~~~~~~~~~~~~~-~~~~ 238 (462)
T TIGR01130 165 SSDVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPL----VGEFTQETAAKYFESG-PLVV 238 (462)
T ss_pred cCCHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCc----eEeeCCcchhhHhCCC-Ccee
Confidence 3455666777764 3666666542 12367887643 358999999999998 9999999999988776 5555
Q ss_pred EEe--CCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCC--CCCeEEEEccc--cceeecC-CCchhH
Q psy159 79 FFY--ETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT--KLPAVVYFRHR--FPSIYRG-DLSEEE 148 (285)
Q Consensus 79 ~Fy--a~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~--~~Ptl~~~~~g--~~~~y~g-~~~~~~ 148 (285)
.|+ ......|+.+...+.++|+.+.+..+.++.+| .+.+++.+|+. .+|+++++... ..+.+.+ ..+.+
T Consensus 239 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~- 317 (462)
T TIGR01130 239 LYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSE- 317 (462)
T ss_pred EEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHH-
Confidence 554 33555689999999999999965447788777 56789999998 69999998753 2345555 55554
Q ss_pred HHHHHHhhhcc----------------ccccccccHHHHHHHHH-hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCc-C
Q psy159 149 EVLQWLITQKT----------------EDRIELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-Y 210 (285)
Q Consensus 149 ~l~~fi~~~~~----------------~~~v~~~~~~~~~~~~~-~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~-~ 210 (285)
.|.+|+.+..+ ...+..++..+|++.+. .+++++|.||++||++|+.+.|.++++++.+++ .
T Consensus 318 ~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~ 397 (462)
T TIGR01130 318 NLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAE 397 (462)
T ss_pred HHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCC
Confidence 89999988542 23566788999999764 588999999999999999999999999999986 2
Q ss_pred -CeEEEEE--cChHHHHhcCCcccCeEEEEeCCeE---EEEecCCccchhHHHHHhhhcC
Q psy159 211 -GIHMVKI--QDPQLAKRYSIKTFPALVYFRNGNP---LIFEGENKILKGTYIGTYISTK 264 (285)
Q Consensus 211 -~i~~~~i--~~~~~~~~~~v~~~Ptl~~~~~g~~---~~y~g~~~~e~~~~~~~~~~~~ 264 (285)
.+.|+.+ +..++.. ++|.++|++++|++|+. ..|.|.++. ..++.|+.+..
T Consensus 398 ~~i~~~~id~~~n~~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~--~~l~~~l~~~~ 454 (462)
T TIGR01130 398 SDVVIAKMDATANDVPP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTL--EDFSKFIAKHA 454 (462)
T ss_pred CcEEEEEEECCCCccCC-CCccccCEEEEEeCCCCcCceEecCcCCH--HHHHHHHHhcC
Confidence 5889988 3444555 99999999999998854 589998763 33566665544
No 8
>KOG0912|consensus
Probab=99.88 E-value=5.8e-22 Score=162.18 Aligned_cols=207 Identities=19% Similarity=0.202 Sum_probs=156.4
Q ss_pred cChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcC----CCCcEEEEeC---ChhHHhhhCCCCCCeEEEEc
Q psy159 61 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETD----NMDITFVKMA---DPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 61 l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~----~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 133 (285)
++.+|++.++.+.+.++|.|||+||..++.+.|.|+++|..++ ...+.+++|| +..++.+|.|..|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4678899999999999999999999999999999999998772 2238888888 67899999999999999999
Q ss_pred cccc--eeecCCCchhHHHHHHHhhhccccccccccHHHHHHHHH-hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcC
Q psy159 134 HRFP--SIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY 210 (285)
Q Consensus 134 ~g~~--~~y~g~~~~~~~l~~fi~~~~~~~~v~~~~~~~~~~~~~-~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~ 210 (285)
+|.. .+|.|.|+.+ +|.+||+++++.+.-+..+...++.... +++.++.+|-+...+....+ .++|.-+++
T Consensus 81 nG~~~~rEYRg~RsVe-aL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~----~kva~~lr~- 154 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVE-ALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNL----RKVASLLRD- 154 (375)
T ss_pred ccchhhhhhccchhHH-HHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHH----HHHHHHHhh-
Confidence 9987 4699999997 9999999999888776677777777655 56777777876776665444 445555554
Q ss_pred CeEEEEEcChHHHHhcCCcccCeEEEEeCCeEE---EEecCCccchhHHHHHhhhcCCCCCCCCCCCCCC
Q psy159 211 GIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL---IFEGENKILKGTYIGTYISTKAFSLIPFCFSEKH 277 (285)
Q Consensus 211 ~i~~~~i~~~~~~~~~~v~~~Ptl~~~~~g~~~---~y~g~~~~e~~~~~~~~~~~~~~~~~~e~~~~~~ 277 (285)
+..|..- -.++.....-.+.+ +++++.+... .|.|++++-+. +..|++..+.|+++|+|.++.
T Consensus 155 dc~f~V~-~gD~~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~e--l~~Wi~dKcvpLVREiTFeN~ 220 (375)
T KOG0912|consen 155 DCVFLVG-FGDLLKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDE--LKQWIQDKCVPLVREITFENA 220 (375)
T ss_pred ccEEEee-ccccccCCCCCCCc-eEEeCCCcCCcCcccccccccHHH--HHHHHHhcchhhhhhhhhccH
Confidence 3333221 12233333333444 4444433222 69999987654 788888999999999999874
No 9
>KOG4277|consensus
Probab=99.88 E-value=4.7e-22 Score=162.58 Aligned_cols=191 Identities=17% Similarity=0.276 Sum_probs=134.5
Q ss_pred hcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCC--cEEEEeC---ChhHHhhhCCCCCCeEEEEccccceeecCCCc
Q psy159 71 EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMD--ITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLS 145 (285)
Q Consensus 71 ~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~--v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~ 145 (285)
++..-|+|.||||||+||+++.|.|.+++.+++..+ +.++++| .+.+|.+|||++||||.+|+++..+.|.|+|.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~ 120 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGRE 120 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCcc
Confidence 345679999999999999999999999999996544 7888888 78999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhccccccccccH--HHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcChHHH
Q psy159 146 EEEEVLQWLITQKTEDRIELITR--VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLA 223 (285)
Q Consensus 146 ~~~~l~~fi~~~~~~~~v~~~~~--~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~ 223 (285)
.+ +|++|...... +.++.++. ..++.+-+.+++.+|+|...-.+ +...+.+.|.+.-. -..|... ...++
T Consensus 121 Kd-~iieFAhR~a~-aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~P----L~d~fidAASe~~~-~a~FfSa-seeVa 192 (468)
T KOG4277|consen 121 KD-AIIEFAHRCAA-AIIEPINENQIEFEHLQARHQPFFVFFGTGEGP----LFDAFIDAASEKFS-VARFFSA-SEEVA 192 (468)
T ss_pred HH-HHHHHHHhccc-ceeeecChhHHHHHHHhhccCceEEEEeCCCCc----HHHHHHHHhhhhee-eeeeecc-ccccC
Confidence 86 99999876653 44455554 45666666799999999865432 23334444433211 1334433 22232
Q ss_pred H-hcCCcccCeEEEEeCCeEEE-EecCCccchhHHHHHhhhcCCCCCCCCCCC
Q psy159 224 K-RYSIKTFPALVYFRNGNPLI-FEGENKILKGTYIGTYISTKAFSLIPFCFS 274 (285)
Q Consensus 224 ~-~~~v~~~Ptl~~~~~g~~~~-y~g~~~~e~~~~~~~~~~~~~~~~~~e~~~ 274 (285)
- .-....-|.+++|++..... ++|.. .. +..|+...+++.+...++
T Consensus 193 Pe~~~~kempaV~VFKDetf~i~de~dd----~d-LseWinRERf~~fLa~dg 240 (468)
T KOG4277|consen 193 PEENDAKEMPAVAVFKDETFEIEDEGDD----ED-LSEWINRERFPGFLAADG 240 (468)
T ss_pred CcccchhhccceEEEccceeEEEecCch----hH-HHHHHhHhhccchhhccc
Confidence 2 23345579999999986554 44533 22 556666666665554443
No 10
>KOG0190|consensus
Probab=99.87 E-value=4.8e-22 Score=176.21 Aligned_cols=102 Identities=20% Similarity=0.346 Sum_probs=85.4
Q ss_pred ceeecChhHHHHHH-hcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC-CCcEEEEeC-ChhHHhhhCCCCCCeEEEEc
Q psy159 57 EIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA-DPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 57 ~v~~l~~~~f~~~~-~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~-~~v~~~~~~-~~~l~~~~~i~~~Ptl~~~~ 133 (285)
.|..+-.+||+.++ +.++.+||.||||||+||++++|.|++||+.+++ .++.++++| ...=.....+.++|||.+|+
T Consensus 367 pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI~~~p 446 (493)
T KOG0190|consen 367 PVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTILFFP 446 (493)
T ss_pred CeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceEEEec
Confidence 57778888898885 5578899999999999999999999999999954 469999999 22233445778899999999
Q ss_pred ccc---ceeecCCCchhHHHHHHHhhhcc
Q psy159 134 HRF---PSIYRGDLSEEEEVLQWLITQKT 159 (285)
Q Consensus 134 ~g~---~~~y~g~~~~~~~l~~fi~~~~~ 159 (285)
.|. ++.|+|+|+.+ ++..|+.+...
T Consensus 447 ag~k~~pv~y~g~R~le-~~~~fi~~~a~ 474 (493)
T KOG0190|consen 447 AGHKSNPVIYNGDRTLE-DLKKFIKKSAT 474 (493)
T ss_pred CCCCCCCcccCCCcchH-HHHhhhccCCC
Confidence 765 58899999997 89999988765
No 11
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.87 E-value=1.3e-21 Score=143.40 Aligned_cols=97 Identities=12% Similarity=0.230 Sum_probs=85.4
Q ss_pred cceeecChhHHHHH---HhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHH-hhhCCCCCCe
Q psy159 56 NEIEEVNRRMLDKL---LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYA-RKWGVTKLPA 128 (285)
Q Consensus 56 ~~v~~l~~~~f~~~---~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~-~~~~i~~~Pt 128 (285)
+.|.++++++|+.+ +.+++.++|.||||||++|+.+.|.|+++|+.+++. +.++++| +.++| ++|+|.++||
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCChHHHHHhcCCcccCE
Confidence 44999999999987 467889999999999999999999999999999654 7888887 66789 5899999999
Q ss_pred EEEEccccc-eeecCCCchhHHHHHHH
Q psy159 129 VVYFRHRFP-SIYRGDLSEEEEVLQWL 154 (285)
Q Consensus 129 l~~~~~g~~-~~y~g~~~~~~~l~~fi 154 (285)
+++|++|+. ..|.|.++.+ .|+.|+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~-~i~~~~ 113 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAP-YMEKFV 113 (113)
T ss_pred EEEEECCccceEEeCCCCHH-HHHhhC
Confidence 999999864 7899999986 888874
No 12
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.85 E-value=1.1e-20 Score=136.74 Aligned_cols=95 Identities=23% Similarity=0.360 Sum_probs=85.4
Q ss_pred ceeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEc
Q psy159 57 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 57 ~v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 133 (285)
.+.++|.++|++.+.++++++|.||++||++|+.+.|.|+++|+.+++. +.++.+| ++.+|++++|.++||+++|+
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 3788999999999988899999999999999999999999999999654 7788777 78999999999999999999
Q ss_pred cccc-eeecCCCchhHHHHHH
Q psy159 134 HRFP-SIYRGDLSEEEEVLQW 153 (285)
Q Consensus 134 ~g~~-~~y~g~~~~~~~l~~f 153 (285)
+|+. ..|.|.++.+ +|.+|
T Consensus 81 ~g~~~~~~~G~~~~~-~l~~f 100 (101)
T cd03003 81 SGMNPEKYYGDRSKE-SLVKF 100 (101)
T ss_pred CCCCcccCCCCCCHH-HHHhh
Confidence 9875 6799999886 88877
No 13
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.83 E-value=5.8e-20 Score=133.27 Aligned_cols=98 Identities=20% Similarity=0.466 Sum_probs=89.3
Q ss_pred eeecChhHHHHHHhc-CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEc
Q psy159 58 IEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 58 v~~l~~~~f~~~~~~-~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 133 (285)
|..+|+++|++.+.+ +++++|+||++||++|+.+.|.|+++++.+.+ ++.++.+| ++.+|++|+|.++|++++|+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 567899999999877 89999999999999999999999999999976 69999888 77899999999999999999
Q ss_pred cccc-eeecCCCchhHHHHHHHhhh
Q psy159 134 HRFP-SIYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 134 ~g~~-~~y~g~~~~~~~l~~fi~~~ 157 (285)
+|+. ..|.|.++.+ +|.+||+++
T Consensus 80 ~g~~~~~~~g~~~~~-~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAE-SLIEFIEKH 103 (103)
T ss_dssp TTEEEEEEESSSSHH-HHHHHHHHH
T ss_pred CCcEEEEEECCCCHH-HHHHHHHcC
Confidence 9987 5899998886 999999864
No 14
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.83 E-value=3.2e-20 Score=136.00 Aligned_cols=97 Identities=23% Similarity=0.372 Sum_probs=85.3
Q ss_pred ceeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC-----CCcEEEEeC---ChhHHhhhCCCCCCe
Q psy159 57 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-----MDITFVKMA---DPRYARKWGVTKLPA 128 (285)
Q Consensus 57 ~v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~-----~~v~~~~~~---~~~l~~~~~i~~~Pt 128 (285)
.|.++++++|++.+.++++++|.||||||++|+++.|.|+++++.+++ .++.++.+| +.++|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 478899999999998889999999999999999999999999987632 137788776 789999999999999
Q ss_pred EEEEccccc--eeecCCCchhHHHHHHH
Q psy159 129 VVYFRHRFP--SIYRGDLSEEEEVLQWL 154 (285)
Q Consensus 129 l~~~~~g~~--~~y~g~~~~~~~l~~fi 154 (285)
+++|++|+. ..|.|.++.+ +|++||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~-~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVE-ALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHH-HHHhhC
Confidence 999999973 7799999886 899885
No 15
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.83 E-value=6e-20 Score=132.91 Aligned_cols=97 Identities=18% Similarity=0.286 Sum_probs=85.3
Q ss_pred ceeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEc
Q psy159 57 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 57 ~v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 133 (285)
.|.++|.++|+++++. .++|.|||+||++|+.+.|.|+++++.++..++.++.+| ++.+|++|+|.++||+++++
T Consensus 2 ~v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 2 NVVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred ceEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 3788999999998754 388999999999999999999999998765568888877 67899999999999999999
Q ss_pred cccceeecCCCchhHHHHHHHhh
Q psy159 134 HRFPSIYRGDLSEEEEVLQWLIT 156 (285)
Q Consensus 134 ~g~~~~y~g~~~~~~~l~~fi~~ 156 (285)
+|+...|.|.++.+ +|.+|+.+
T Consensus 80 ~g~~~~~~G~~~~~-~l~~~i~~ 101 (101)
T cd02994 80 DGVFRRYQGPRDKE-DLISFIEE 101 (101)
T ss_pred CCCEEEecCCCCHH-HHHHHHhC
Confidence 99877899999886 89999863
No 16
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.83 E-value=7e-20 Score=133.35 Aligned_cols=94 Identities=11% Similarity=0.219 Sum_probs=83.4
Q ss_pred eeecChhHHHHHHhcCCcEEEEEeC--CCCh---hHHHHHHHHHhHHhhcCCCCcEEEEeCC--------hhHHhhhCCC
Q psy159 58 IEEVNRRMLDKLLEENEFVTVFFYE--TDHK---DSVKVLERLEKIDGETDNMDITFVKMAD--------PRYARKWGVT 124 (285)
Q Consensus 58 v~~l~~~~f~~~~~~~~~~lv~Fya--~~c~---~C~~~~~~~~~~a~~~~~~~v~~~~~~~--------~~l~~~~~i~ 124 (285)
+.+||++||++.+.+.+.+||.||| |||+ ||++++|.+.+++.. +.++.+|. .+||++|+|+
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-----v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-----LLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-----eEEEEEecccccchhhHHHHHHhCCC
Confidence 7889999999999999999999999 9999 999999999887653 67777763 7799999999
Q ss_pred --CCCeEEEEcccc---ceeecCC-CchhHHHHHHHhhh
Q psy159 125 --KLPAVVYFRHRF---PSIYRGD-LSEEEEVLQWLITQ 157 (285)
Q Consensus 125 --~~Ptl~~~~~g~---~~~y~g~-~~~~~~l~~fi~~~ 157 (285)
+||||++|++|. +..|.|. ++.+ +|++||.++
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~-~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVD-ALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHH-HHHHHHHhc
Confidence 999999999984 5789996 8886 999999875
No 17
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.81 E-value=2.2e-19 Score=130.70 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=82.6
Q ss_pred eeecChhHHHHHHh-cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEc
Q psy159 58 IEEVNRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 58 v~~l~~~~f~~~~~-~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 133 (285)
+.+++.++|++.+. ++++++|.|||+||++|+.+.|.|+++++.+++. +.++.+| ++++|++++|.++||+++|+
T Consensus 3 v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 3 VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred ceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 77899999999864 4678999999999999999999999999998543 7888877 68899999999999999999
Q ss_pred cc-cc-eeecCCCc-hhHHHHHHH
Q psy159 134 HR-FP-SIYRGDLS-EEEEVLQWL 154 (285)
Q Consensus 134 ~g-~~-~~y~g~~~-~~~~l~~fi 154 (285)
+| +. ..|.|..+ .+ +|.+|+
T Consensus 82 ~g~~~~~~~~G~~~~~~-~l~~~i 104 (104)
T cd03004 82 GNASKYHSYNGWHRDAD-SILEFI 104 (104)
T ss_pred CCCCCceEccCCCCCHH-HHHhhC
Confidence 87 44 68999887 64 888875
No 18
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.80 E-value=4.7e-19 Score=130.65 Aligned_cols=101 Identities=13% Similarity=0.331 Sum_probs=85.2
Q ss_pred cceeecChhHHHHHHhcC-CcEEEEEeCCCChh--HH--HHHHHHHhHHhhc-CCCCcEEEEeC---ChhHHhhhCCCCC
Q psy159 56 NEIEEVNRRMLDKLLEEN-EFVTVFFYETDHKD--SV--KVLERLEKIDGET-DNMDITFVKMA---DPRYARKWGVTKL 126 (285)
Q Consensus 56 ~~v~~l~~~~f~~~~~~~-~~~lv~Fya~~c~~--C~--~~~~~~~~~a~~~-~~~~v~~~~~~---~~~l~~~~~i~~~ 126 (285)
+.|.++|++||++.+.++ .+++++|+++||++ |+ .+.|.+.++|.++ +..++.++++| ++++|++|||.++
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~i 88 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEE 88 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccc
Confidence 348889999999987655 56777788888865 99 7788888888777 44458999887 8999999999999
Q ss_pred CeEEEEccccceeecCCCchhHHHHHHHhhh
Q psy159 127 PAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 127 Ptl~~~~~g~~~~y~g~~~~~~~l~~fi~~~ 157 (285)
||+++|++|+.+.|.|.++.+ .|++|+.+.
T Consensus 89 PTl~lfk~G~~v~~~G~~~~~-~l~~~l~~~ 118 (120)
T cd03065 89 DSIYVFKDDEVIEYDGEFAAD-TLVEFLLDL 118 (120)
T ss_pred cEEEEEECCEEEEeeCCCCHH-HHHHHHHHH
Confidence 999999999988899999886 899999764
No 19
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.79 E-value=8.6e-19 Score=128.38 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=79.3
Q ss_pred cccccccHHHHHHH---HHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHH-HhcCCcccCe
Q psy159 161 DRIELITRVMLETM---VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLA-KRYSIKTFPA 233 (285)
Q Consensus 161 ~~v~~~~~~~~~~~---~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~-~~~~v~~~Pt 233 (285)
+.+..++.++|++. +++++.++|.|||+||++|+.+.|.++++++++++ .+.|+++ .+.+++ ++|+|.++||
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCChHHHHHhcCCcccCE
Confidence 44568899999886 56799999999999999999999999999999986 6889999 567788 5899999999
Q ss_pred EEEEeCCe-EEEEecCCccc
Q psy159 234 LVYFRNGN-PLIFEGENKIL 252 (285)
Q Consensus 234 l~~~~~g~-~~~y~g~~~~e 252 (285)
+++|++|+ +..|.|.++.+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~ 107 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAP 107 (113)
T ss_pred EEEEECCccceEEeCCCCHH
Confidence 99999986 46999998744
No 20
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.78 E-value=1.8e-18 Score=126.83 Aligned_cols=97 Identities=13% Similarity=0.312 Sum_probs=81.7
Q ss_pred ceeecChhHHHHHHh---cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC----ChhHHhh-hCCCCCCe
Q psy159 57 EIEEVNRRMLDKLLE---ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARK-WGVTKLPA 128 (285)
Q Consensus 57 ~v~~l~~~~f~~~~~---~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~----~~~l~~~-~~i~~~Pt 128 (285)
.|.+++.++|+.++. ++++++|.||++||++|+++.|.|+++++.+++.++.++.+| ...+|++ ++++++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 488999999999974 468999999999999999999999999999976567777766 3567864 99999999
Q ss_pred EEEEcccc--ceeecCC-CchhHHHHHHH
Q psy159 129 VVYFRHRF--PSIYRGD-LSEEEEVLQWL 154 (285)
Q Consensus 129 l~~~~~g~--~~~y~g~-~~~~~~l~~fi 154 (285)
+++|.+|. ...|.|. ++.+ +|+.|+
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~-~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVD-SLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHH-HHHhhC
Confidence 99998864 4789995 7775 898885
No 21
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.78 E-value=2e-18 Score=124.94 Aligned_cols=88 Identities=20% Similarity=0.379 Sum_probs=79.2
Q ss_pred cccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeC
Q psy159 163 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239 (285)
Q Consensus 163 v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~ 239 (285)
+..++.++|++.+.++++++|.||++||++|+.+.|.++++++++++ .+.|+.+ .++.++++++|+++||+++|++
T Consensus 3 ~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 3 IVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred eEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 44678999999988889999999999999999999999999999986 6889888 6788999999999999999999
Q ss_pred CeEE-EEecCCcc
Q psy159 240 GNPL-IFEGENKI 251 (285)
Q Consensus 240 g~~~-~y~g~~~~ 251 (285)
|+.. .|.|.++.
T Consensus 82 g~~~~~~~G~~~~ 94 (101)
T cd03003 82 GMNPEKYYGDRSK 94 (101)
T ss_pred CCCcccCCCCCCH
Confidence 9755 88898864
No 22
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.77 E-value=4e-18 Score=125.08 Aligned_cols=96 Identities=20% Similarity=0.345 Sum_probs=81.9
Q ss_pred eeecChhHHHHHHhc-CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-----ChhHHhhhCCCCCCeEEE
Q psy159 58 IEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVY 131 (285)
Q Consensus 58 v~~l~~~~f~~~~~~-~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-----~~~l~~~~~i~~~Ptl~~ 131 (285)
|.++++++|+..+.+ +++++|.||++||++|+++.|.|+++++.+++. +.++.+| +..+|++|+|.++||+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 678999999998755 567999999999999999999999999998542 5566554 567999999999999999
Q ss_pred Ecccc------ceeecCCCchhHHHHHHHh
Q psy159 132 FRHRF------PSIYRGDLSEEEEVLQWLI 155 (285)
Q Consensus 132 ~~~g~------~~~y~g~~~~~~~l~~fi~ 155 (285)
|++|. ...|.|.++.+ +|.+||.
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~-~l~~fi~ 109 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAK-AIVDFVL 109 (109)
T ss_pred EeCCCcccccccccccCccCHH-HHHHHhC
Confidence 99885 36799999886 8999973
No 23
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.76 E-value=6.6e-18 Score=137.94 Aligned_cols=102 Identities=17% Similarity=0.261 Sum_probs=87.7
Q ss_pred ccceeecChhHHHHHHhc-----CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCC
Q psy159 55 KNEIEEVNRRMLDKLLEE-----NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKL 126 (285)
Q Consensus 55 ~~~v~~l~~~~f~~~~~~-----~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~ 126 (285)
.+.+.++|+++|++++.. +++++|.||||||++|+++.|.|+++++.+++. +.++.+| ++++|++|+|.++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~~~~~l~~~~~I~~~ 107 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDATRALNLAKRFAIKGY 107 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCcccHHHHHHcCCCcC
Confidence 345899999999998753 478999999999999999999999999999653 7788777 7889999999999
Q ss_pred CeEEEEccccceeec-CCCchhHHHHHHHhhhc
Q psy159 127 PAVVYFRHRFPSIYR-GDLSEEEEVLQWLITQK 158 (285)
Q Consensus 127 Ptl~~~~~g~~~~y~-g~~~~~~~l~~fi~~~~ 158 (285)
||+++|++|+.+.|. |.++.+ ++.+|+.+..
T Consensus 108 PTl~~f~~G~~v~~~~G~~s~e-~L~~fi~~~~ 139 (224)
T PTZ00443 108 PTLLLFDKGKMYQYEGGDRSTE-KLAAFALGDF 139 (224)
T ss_pred CEEEEEECCEEEEeeCCCCCHH-HHHHHHHHHH
Confidence 999999999887664 556665 8999998764
No 24
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.76 E-value=4.4e-18 Score=123.28 Aligned_cols=95 Identities=14% Similarity=0.268 Sum_probs=82.8
Q ss_pred eeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC--CCcEEEEeC---ChhHHhhhCCCCCCeEEEE
Q psy159 58 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA---DPRYARKWGVTKLPAVVYF 132 (285)
Q Consensus 58 v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~--~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~ 132 (285)
+.++|.++|+..+.++ +++|.|||+||++|+.+.|.|+++++.+++ .++.++.+| +..+|++|+|.++||+++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 6789999999998766 599999999999999999999999999954 357788777 6789999999999999999
Q ss_pred ccccc-eeecCCCchhHHHHHHH
Q psy159 133 RHRFP-SIYRGDLSEEEEVLQWL 154 (285)
Q Consensus 133 ~~g~~-~~y~g~~~~~~~l~~fi 154 (285)
++|+. ..|.|.++.+ +|.+||
T Consensus 81 ~~g~~~~~~~G~~~~~-~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLD-SLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHH-HHHhhC
Confidence 99876 5799999876 788775
No 25
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=8.7e-18 Score=154.48 Aligned_cols=150 Identities=13% Similarity=0.197 Sum_probs=118.6
Q ss_pred HHHHcCCCCCCeEEEeecCccccccCC---CcchHHHHHHhhcCC----------C--cc-cccceeecChhHHHHH-Hh
Q psy159 9 AAAKYNIINLPSLVYFRKQVPLLYDGD---LFDEEKILTWLTSQD----------V--FE-IKNEIEEVNRRMLDKL-LE 71 (285)
Q Consensus 9 ~~~~~~i~~~Ptl~~~~~~~~~~y~g~---~~~~~~i~~fi~~~~----------~--p~-~~~~v~~l~~~~f~~~-~~ 71 (285)
++..+|++++|++++........+.+. ..+.+.|.+|+++-. . |. ..+.|..++.++|++. ++
T Consensus 294 ~~~~~gi~~~P~~~i~~~~~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~ 373 (477)
T PTZ00102 294 AKEHLLIEEFPGLAYQSPAGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFK 373 (477)
T ss_pred HHHhcCcccCceEEEEcCCcccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhc
Confidence 677999999999988874433334443 234558999987521 1 11 1345888999999998 46
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC-CCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccc--eeecCCCc
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP--SIYRGDLS 145 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~-~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~--~~y~g~~~ 145 (285)
++++++|.|||+||++|+.+.|.|+++|+.+++ ..+.++.+| +...|++++++++||+++|++|.. ..|.|.++
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~ 453 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERT 453 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCC
Confidence 778999999999999999999999999998854 347788777 567899999999999999998764 57999998
Q ss_pred hhHHHHHHHhhhcc
Q psy159 146 EEEEVLQWLITQKT 159 (285)
Q Consensus 146 ~~~~l~~fi~~~~~ 159 (285)
.+ ++.+|+.++..
T Consensus 454 ~~-~l~~~i~~~~~ 466 (477)
T PTZ00102 454 VE-GFKEFVNKHAT 466 (477)
T ss_pred HH-HHHHHHHHcCC
Confidence 86 99999998775
No 26
>KOG0910|consensus
Probab=99.76 E-value=3.8e-18 Score=127.52 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=87.1
Q ss_pred ceeecChhHHHHH-HhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEE
Q psy159 57 EIEEVNRRMLDKL-LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 132 (285)
Q Consensus 57 ~v~~l~~~~f~~~-~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~ 132 (285)
.+..++.++|++. ++++.|++|.|||+||++|+.+.|.+++++..+.+. +.++++| +.+++.+|+|...||+++|
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEccccccchHhhcceeeeeEEEEE
Confidence 3677889999887 477899999999999999999999999999999654 8888877 8899999999999999999
Q ss_pred ccccce-eecCCCchhHHHHHHHhhhc
Q psy159 133 RHRFPS-IYRGDLSEEEEVLQWLITQK 158 (285)
Q Consensus 133 ~~g~~~-~y~g~~~~~~~l~~fi~~~~ 158 (285)
++|+.. .+-|....+ .+.++|++.+
T Consensus 123 knGe~~d~~vG~~~~~-~l~~~i~k~l 148 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKE-QLRSLIKKFL 148 (150)
T ss_pred ECCEEeeeecccCCHH-HHHHHHHHHh
Confidence 999986 678877775 8888887654
No 27
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.76 E-value=5.6e-18 Score=124.54 Aligned_cols=96 Identities=10% Similarity=0.149 Sum_probs=80.8
Q ss_pred ecChhHHHHHH-h--cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEc
Q psy159 60 EVNRRMLDKLL-E--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 60 ~l~~~~f~~~~-~--~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 133 (285)
.++.++|++.+ . .+++++|.||||||++|+.+.|.|+++++.+++.++.++++| ++.++++++|.++||+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 46778887643 2 568999999999999999999999999999965567788777 67899999999999999999
Q ss_pred cccce-eecCCCchhHHHHHHHhh
Q psy159 134 HRFPS-IYRGDLSEEEEVLQWLIT 156 (285)
Q Consensus 134 ~g~~~-~y~g~~~~~~~l~~fi~~ 156 (285)
+|+.. .+.|..+.+ .|.+|+.+
T Consensus 88 ~g~~~~~~~G~~~~~-~l~~~i~~ 110 (111)
T cd02963 88 NGQVTFYHDSSFTKQ-HVVDFVRK 110 (111)
T ss_pred CCEEEEEecCCCCHH-HHHHHHhc
Confidence 99874 457877775 89999865
No 28
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.76 E-value=8.2e-18 Score=122.05 Aligned_cols=95 Identities=16% Similarity=0.267 Sum_probs=82.3
Q ss_pred eeecChhHHHHHHhc-CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEc
Q psy159 58 IEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 58 v~~l~~~~f~~~~~~-~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 133 (285)
|.++++++|++.+.+ +++++|.||++||++|+++.|.|.++++.+.+. +.++.+| ++.+|++++|+++|++++|+
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 80 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDADVHQSLAQQYGVRGFPTIKVFG 80 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence 678999999998755 455999999999999999999999999988543 6777666 77899999999999999999
Q ss_pred cc--cceeecCCCchhHHHHHHH
Q psy159 134 HR--FPSIYRGDLSEEEEVLQWL 154 (285)
Q Consensus 134 ~g--~~~~y~g~~~~~~~l~~fi 154 (285)
+| ....|.|.++.+ +|.+|+
T Consensus 81 ~~~~~~~~~~g~~~~~-~l~~~~ 102 (103)
T cd03001 81 AGKNSPQDYQGGRTAK-AIVSAA 102 (103)
T ss_pred CCCcceeecCCCCCHH-HHHHHh
Confidence 88 347899999886 899987
No 29
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.76 E-value=1.7e-17 Score=136.43 Aligned_cols=144 Identities=18% Similarity=0.242 Sum_probs=110.6
Q ss_pred cchHHHHHcCCCCCCeEEEeecCccc--cccCCCcchHHHHHHhhcCCCcccccceeecChhHHHHHHhcCCcEE-EEEe
Q psy159 5 SDTEAAAKYNIINLPSLVYFRKQVPL--LYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVT-VFFY 81 (285)
Q Consensus 5 ~~~~~~~~~~i~~~Ptl~~~~~~~~~--~y~g~~~~~~~i~~fi~~~~~p~~~~~v~~l~~~~f~~~~~~~~~~l-v~Fy 81 (285)
++++++.+|+|.+.||+++|++|..+ .|.|....+ ++..|++....- +.....+++++.+.+-...+++. +.||
T Consensus 65 ~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~-~l~~~i~~~~~~--~~~~~~L~~~~~~~l~~~~~pv~I~~F~ 141 (215)
T TIGR02187 65 EDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAGY-EFAALIEDIVRV--SQGEPGLSEKTVELLQSLDEPVRIEVFV 141 (215)
T ss_pred ccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCHH-HHHHHHHHHHHh--cCCCCCCCHHHHHHHHhcCCCcEEEEEE
Confidence 47899999999999999999999654 578865555 777777654221 11245677777777655555544 4599
Q ss_pred CCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHHHHHhh
Q psy159 82 ETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLIT 156 (285)
Q Consensus 82 a~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~~fi~~ 156 (285)
++||++|+.+.+.+++++.... ++.+..+| +++++++|+|.++||++++++|.. +.|....+ ++.+|+.+
T Consensus 142 a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~--~~G~~~~~-~l~~~l~~ 214 (215)
T TIGR02187 142 TPTCPYCPYAVLMAHKFALAND--KILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE--FVGAYPEE-QFLEYILS 214 (215)
T ss_pred CCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE--EECCCCHH-HHHHHHHh
Confidence 9999999999999999987743 36666666 789999999999999999977753 88887765 89988864
No 30
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.75 E-value=2.3e-17 Score=119.49 Aligned_cols=97 Identities=25% Similarity=0.544 Sum_probs=84.6
Q ss_pred cccccHHHHHHHHHh-CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEe
Q psy159 163 IELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 238 (285)
Q Consensus 163 v~~~~~~~~~~~~~~-~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~ 238 (285)
|..++.++|++.+.+ +++++|+||++||++|+.+.|.++++++++.+ ++.|+.+ +++.++++|+|+++|++++|+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 346788999999887 99999999999999999999999999999997 7999999 678999999999999999999
Q ss_pred CCeEE-EEecCCccchhHHHHHhhh
Q psy159 239 NGNPL-IFEGENKILKGTYIGTYIS 262 (285)
Q Consensus 239 ~g~~~-~y~g~~~~e~~~~~~~~~~ 262 (285)
+|+.. .|.|.++ .+.+..|+.+
T Consensus 80 ~g~~~~~~~g~~~--~~~l~~~i~~ 102 (103)
T PF00085_consen 80 NGKEVKRYNGPRN--AESLIEFIEK 102 (103)
T ss_dssp TTEEEEEEESSSS--HHHHHHHHHH
T ss_pred CCcEEEEEECCCC--HHHHHHHHHc
Confidence 99877 8999975 3335555543
No 31
>KOG0910|consensus
Probab=99.75 E-value=8.2e-18 Score=125.71 Aligned_cols=98 Identities=20% Similarity=0.342 Sum_probs=84.1
Q ss_pred cccccccHHHHHHH-HHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEE
Q psy159 161 DRIELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 161 ~~v~~~~~~~~~~~-~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~ 236 (285)
..+...+..+|++. ++++.||+|.|||+||++|+.+.|.+++++.++.+ .++++++ ++.+++.+|+|+.+||+++
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccccccchHhhcceeeeeEEEE
Confidence 45567888899885 66799999999999999999999999999999987 7999999 7899999999999999999
Q ss_pred EeCCeEE-EEecCCccchhHHHHHhhh
Q psy159 237 FRNGNPL-IFEGENKILKGTYIGTYIS 262 (285)
Q Consensus 237 ~~~g~~~-~y~g~~~~e~~~~~~~~~~ 262 (285)
|++|+.+ .+-|....+ .+..+++
T Consensus 122 fknGe~~d~~vG~~~~~---~l~~~i~ 145 (150)
T KOG0910|consen 122 FKNGEKVDRFVGAVPKE---QLRSLIK 145 (150)
T ss_pred EECCEEeeeecccCCHH---HHHHHHH
Confidence 9999988 777776522 2555544
No 32
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.75 E-value=2e-17 Score=119.76 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=78.8
Q ss_pred ecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC--ChhHHhhhCCCCCCeEEEEccccc
Q psy159 60 EVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--DPRYARKWGVTKLPAVVYFRHRFP 137 (285)
Q Consensus 60 ~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~--~~~l~~~~~i~~~Ptl~~~~~g~~ 137 (285)
.-|.++|+.++.++++++|.|||+||++|+.+.|.++++++.+++..+.++.+| +++++++|+|+++||+++|++|+.
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEE
Confidence 357899999998899999999999999999999999999998864445666554 788999999999999999999987
Q ss_pred e-eecCCCchhHHHHHHHhh
Q psy159 138 S-IYRGDLSEEEEVLQWLIT 156 (285)
Q Consensus 138 ~-~y~g~~~~~~~l~~fi~~ 156 (285)
. ...|. +.. .+.++|.+
T Consensus 84 ~~~~~G~-~~~-~~~~~i~~ 101 (102)
T cd02948 84 VAVIRGA-NAP-LLNKTITE 101 (102)
T ss_pred EEEEecC-ChH-HHHHHHhh
Confidence 4 45554 443 78888754
No 33
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.74 E-value=1.8e-17 Score=121.45 Aligned_cols=89 Identities=21% Similarity=0.410 Sum_probs=77.6
Q ss_pred cccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcC-----CeEEEEE---cChHHHHhcCCcccCeE
Q psy159 163 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-----GIHMVKI---QDPQLAKRYSIKTFPAL 234 (285)
Q Consensus 163 v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~-----~i~~~~i---~~~~~~~~~~v~~~Ptl 234 (285)
+..++.++|++.+.++++++|.|||+||++|+.+.|.|+++++.+++. ++.++.+ .+..++++|+|+++||+
T Consensus 3 v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl 82 (108)
T cd02996 3 IVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTL 82 (108)
T ss_pred eEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEE
Confidence 457789999999988999999999999999999999999999886421 4788888 57899999999999999
Q ss_pred EEEeCCeE--EEEecCCcc
Q psy159 235 VYFRNGNP--LIFEGENKI 251 (285)
Q Consensus 235 ~~~~~g~~--~~y~g~~~~ 251 (285)
++|++|+. ..|.|.++.
T Consensus 83 ~~~~~g~~~~~~~~g~~~~ 101 (108)
T cd02996 83 KLFRNGMMMKREYRGQRSV 101 (108)
T ss_pred EEEeCCcCcceecCCCCCH
Confidence 99999983 588898864
No 34
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.74 E-value=1.5e-17 Score=120.77 Aligned_cols=96 Identities=18% Similarity=0.335 Sum_probs=83.4
Q ss_pred eeecChhHHHHHHhc-CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC-CCcEEEEeC--ChhHHhhhCCCCCCeEEEEc
Q psy159 58 IEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA--DPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 58 v~~l~~~~f~~~~~~-~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~-~~v~~~~~~--~~~l~~~~~i~~~Ptl~~~~ 133 (285)
|.+++.++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+++ .++.++.+| ..+++..+++.++|++++|+
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFFP 81 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEEc
Confidence 788999999998755 58899999999999999999999999999855 458888877 45688899999999999999
Q ss_pred ccc---ceeecCCCchhHHHHHHH
Q psy159 134 HRF---PSIYRGDLSEEEEVLQWL 154 (285)
Q Consensus 134 ~g~---~~~y~g~~~~~~~l~~fi 154 (285)
+|+ ...|.|..+.. ++.+||
T Consensus 82 ~~~~~~~~~~~g~~~~~-~l~~fi 104 (104)
T cd02995 82 AGDKSNPIKYEGDRTLE-DLIKFI 104 (104)
T ss_pred CCCcCCceEccCCcCHH-HHHhhC
Confidence 886 46799999886 888885
No 35
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.74 E-value=1.7e-17 Score=119.46 Aligned_cols=80 Identities=15% Similarity=0.351 Sum_probs=70.0
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC----ChhHHhhhCCCCCCeEEEEccccceeecCCCchh
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEE 147 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~ 147 (285)
.+++++|.|||+||++|+.+.|.|+++++.+++ +.++.+| ++.++++|+|.++||+++|++|....|.|.++.+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~~~~ 94 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTRTLD 94 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCCCHH
Confidence 568899999999999999999999999999864 5555555 5789999999999999999999667899998886
Q ss_pred HHHHHHH
Q psy159 148 EEVLQWL 154 (285)
Q Consensus 148 ~~l~~fi 154 (285)
+|.+|+
T Consensus 95 -~l~~f~ 100 (100)
T cd02999 95 -SLAAFY 100 (100)
T ss_pred -HHHhhC
Confidence 898885
No 36
>PTZ00062 glutaredoxin; Provisional
Probab=99.74 E-value=2.6e-16 Score=126.44 Aligned_cols=168 Identities=14% Similarity=0.205 Sum_probs=116.5
Q ss_pred ChhHHHHHHhcC-CcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEccccce-e
Q psy159 62 NRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPS-I 139 (285)
Q Consensus 62 ~~~~f~~~~~~~-~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~~-~ 139 (285)
+.++++++++++ ..++++|+|+||+.|+.+.|.+.++++.+. ++.|+++|.. |+|.++|++++|++|+.+ +
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d-----~~V~~vPtfv~~~~g~~i~r 77 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA-----DANNEYGVFEFYQNSQLINS 77 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc-----cCcccceEEEEEECCEEEee
Confidence 567888888754 678899999999999999999999999884 4899998844 999999999999999874 5
Q ss_pred ecCCCchhHHHHHHHhhhccccccccccHHHHHHHHHhCCeEEEEE---ECCCChhhHHHHHHHHHHHhhcCcCCeEEEE
Q psy159 140 YRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYF---YKLNCNICDQILEGLEKVDDECDIYGIHMVK 216 (285)
Q Consensus 140 y~g~~~~~~~l~~fi~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~F---~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~ 216 (285)
+.|.... ++..++......+.... ..+-+++++++++.++..= ..|+|+.|+++...|++....|. ...
T Consensus 78 ~~G~~~~--~~~~~~~~~~~~~~~~~-~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~-----~~D 149 (204)
T PTZ00062 78 LEGCNTS--TLVSFIRGWAQKGSSED-TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYE-----TYN 149 (204)
T ss_pred eeCCCHH--HHHHHHHHHcCCCCHHH-HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEE-----EEE
Confidence 7776543 68999888766544321 2233455555544332222 23699999999998887643322 233
Q ss_pred E-cChH----HHHhcCCcccCeEEEEeCCeEEEEecCC
Q psy159 217 I-QDPQ----LAKRYSIKTFPALVYFRNGNPLIFEGEN 249 (285)
Q Consensus 217 i-~~~~----~~~~~~v~~~Ptl~~~~~g~~~~y~g~~ 249 (285)
+ ++++ +.+.-+-+.+|.+.+ +|+. -|+.
T Consensus 150 I~~d~~~~~~l~~~sg~~TvPqVfI--~G~~---IGG~ 182 (204)
T PTZ00062 150 IFEDPDLREELKVYSNWPTYPQLYV--NGEL---IGGH 182 (204)
T ss_pred cCCCHHHHHHHHHHhCCCCCCeEEE--CCEE---EcCh
Confidence 3 3333 333345567887765 6653 3554
No 37
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.74 E-value=2.7e-17 Score=119.57 Aligned_cols=87 Identities=16% Similarity=0.316 Sum_probs=76.1
Q ss_pred cccccHHHHHHHHH-hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEe
Q psy159 163 IELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 238 (285)
Q Consensus 163 v~~~~~~~~~~~~~-~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~ 238 (285)
+..++.++|++.+. ++++++|.||++||++|+.+.|.|+++++++.+ .+.|+.+ .+++++++++|+++||+++|+
T Consensus 3 v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 3 VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred ceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 45678899999765 467999999999999999999999999999976 6889999 678899999999999999999
Q ss_pred CC-eE-EEEecCCc
Q psy159 239 NG-NP-LIFEGENK 250 (285)
Q Consensus 239 ~g-~~-~~y~g~~~ 250 (285)
+| +. ..|.|.++
T Consensus 82 ~g~~~~~~~~G~~~ 95 (104)
T cd03004 82 GNASKYHSYNGWHR 95 (104)
T ss_pred CCCCCceEccCCCC
Confidence 87 54 48999875
No 38
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.73 E-value=5.7e-17 Score=117.75 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=70.7
Q ss_pred HHHHHHHHH--hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCeE
Q psy159 168 RVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 168 ~~~~~~~~~--~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~ 242 (285)
.+++++.+. ++++++|.|||+||++|+.|.|.+++++.++.+ .+.|+++ ++++++++|+|.++||+++|++|+.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence 456777776 478899999999999999999999999999986 5789999 7899999999999999999999997
Q ss_pred E-EEecCC
Q psy159 243 L-IFEGEN 249 (285)
Q Consensus 243 ~-~y~g~~ 249 (285)
+ ...|..
T Consensus 81 v~~~~G~~ 88 (114)
T cd02954 81 MKIDLGTG 88 (114)
T ss_pred EEEEcCCC
Confidence 7 444543
No 39
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.73 E-value=3.5e-17 Score=118.42 Aligned_cols=96 Identities=22% Similarity=0.379 Sum_probs=84.8
Q ss_pred cChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCC-CcEEEEeC---ChhHHhhhCCCCCCeEEEEcccc
Q psy159 61 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM-DITFVKMA---DPRYARKWGVTKLPAVVYFRHRF 136 (285)
Q Consensus 61 l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~-~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~ 136 (285)
|+.++|+..+.++++++|.||++||++|+.+.+.|+++++.+++. ++.++.+| ++.+|++|+|.++|++++|++|.
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 578899999888899999999999999999999999999999543 47888776 78899999999999999999887
Q ss_pred -ceeecCCCchhHHHHHHHhhh
Q psy159 137 -PSIYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 137 -~~~y~g~~~~~~~l~~fi~~~ 157 (285)
...|.|..+.+ +|..|+.++
T Consensus 81 ~~~~~~g~~~~~-~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGGRDLE-AIVEFVNEK 101 (102)
T ss_pred cceeecCCCCHH-HHHHHHHhc
Confidence 68899998886 899999764
No 40
>PHA02278 thioredoxin-like protein
Probab=99.73 E-value=4.4e-17 Score=117.38 Aligned_cols=91 Identities=8% Similarity=0.137 Sum_probs=73.3
Q ss_pred ChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC-CCcEEEEeCC-----hhHHhhhCCCCCCeEEEEccc
Q psy159 62 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMAD-----PRYARKWGVTKLPAVVYFRHR 135 (285)
Q Consensus 62 ~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~-~~v~~~~~~~-----~~l~~~~~i~~~Ptl~~~~~g 135 (285)
+.++|++.+.++++++|.|||+||++|+.+.|.++++++.+.. ..+..+.+|. +.++++|+|.+.||+++|++|
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 4577888888889999999999999999999999999987532 2355555552 689999999999999999999
Q ss_pred cce-eecCCCchhHHHHHH
Q psy159 136 FPS-IYRGDLSEEEEVLQW 153 (285)
Q Consensus 136 ~~~-~y~g~~~~~~~l~~f 153 (285)
+.+ +..|....+ .+.++
T Consensus 83 ~~v~~~~G~~~~~-~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPM-QLQEL 100 (103)
T ss_pred EEEEEEeCCCCHH-HHHhh
Confidence 874 577866654 55544
No 41
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.73 E-value=4e-17 Score=120.40 Aligned_cols=98 Identities=15% Similarity=0.262 Sum_probs=80.9
Q ss_pred cccccccHHHHHHHHHh-CCeEEEEEECCCChh--hH--HHHHHHHHHHhhc--CcCCeEEEEE---cChHHHHhcCCcc
Q psy159 161 DRIELITRVMLETMVEE-TQYLAVYFYKLNCNI--CD--QILEGLEKVDDEC--DIYGIHMVKI---QDPQLAKRYSIKT 230 (285)
Q Consensus 161 ~~v~~~~~~~~~~~~~~-~~~~~v~F~a~~c~~--c~--~~~~~~~~la~~~--~~~~i~~~~i---~~~~~~~~~~v~~ 230 (285)
..+..++.++|++.+.+ +.+++++|+++||++ |+ .+.|.+.++|.++ .+ ++.|+++ .+++++++|+|++
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCCHHHHHHcCCcc
Confidence 34557889999997665 557788888888865 99 8899999999988 54 6999999 7899999999999
Q ss_pred cCeEEEEeCCeEEEEecCCccchhHHHHHhh
Q psy159 231 FPALVYFRNGNPLIFEGENKILKGTYIGTYI 261 (285)
Q Consensus 231 ~Ptl~~~~~g~~~~y~g~~~~e~~~~~~~~~ 261 (285)
+||+++|++|+.+.|.|.++.+ .+..|+.
T Consensus 88 iPTl~lfk~G~~v~~~G~~~~~--~l~~~l~ 116 (120)
T cd03065 88 EDSIYVFKDDEVIEYDGEFAAD--TLVEFLL 116 (120)
T ss_pred ccEEEEEECCEEEEeeCCCCHH--HHHHHHH
Confidence 9999999999988999998643 3455543
No 42
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.73 E-value=3.9e-17 Score=118.68 Aligned_cols=96 Identities=17% Similarity=0.326 Sum_probs=83.2
Q ss_pred eeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC-CCcEEEEeC-----ChhHHhhhCCCCCCeEEE
Q psy159 58 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA-----DPRYARKWGVTKLPAVVY 131 (285)
Q Consensus 58 v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~-~~v~~~~~~-----~~~l~~~~~i~~~Ptl~~ 131 (285)
|.++++++|+..+.++++++|.||++||++|+++.|.+.++++.+.. ..+.++.+| +..++++++|+++||+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 67889999999998888999999999999999999999999998842 346777655 568999999999999999
Q ss_pred Eccccc-eeecCCCchhHHHHHHH
Q psy159 132 FRHRFP-SIYRGDLSEEEEVLQWL 154 (285)
Q Consensus 132 ~~~g~~-~~y~g~~~~~~~l~~fi 154 (285)
|++|+. ..|.|..+.+ ++.+|+
T Consensus 82 ~~~g~~~~~~~g~~~~~-~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTAE-DIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCHH-HHHhhC
Confidence 999874 6799988875 888875
No 43
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.73 E-value=5.8e-17 Score=117.19 Aligned_cols=87 Identities=23% Similarity=0.406 Sum_probs=75.5
Q ss_pred cccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeC
Q psy159 163 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239 (285)
Q Consensus 163 v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~ 239 (285)
+..++.++|++.+++ .++|.|||+||++|+.+.|.|++++..+++.++.++.+ +++.++++|+|+++||++++++
T Consensus 3 v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02994 3 VVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKD 80 (101)
T ss_pred eEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCC
Confidence 456789999987754 37899999999999999999999999877546888888 6788999999999999999999
Q ss_pred CeEEEEecCCcc
Q psy159 240 GNPLIFEGENKI 251 (285)
Q Consensus 240 g~~~~y~g~~~~ 251 (285)
|+...|.|.++.
T Consensus 81 g~~~~~~G~~~~ 92 (101)
T cd02994 81 GVFRRYQGPRDK 92 (101)
T ss_pred CCEEEecCCCCH
Confidence 987789998863
No 44
>PRK09381 trxA thioredoxin; Provisional
Probab=99.72 E-value=7.6e-17 Score=118.26 Aligned_cols=102 Identities=20% Similarity=0.311 Sum_probs=86.3
Q ss_pred ccceeecChhHHHHH-HhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEE
Q psy159 55 KNEIEEVNRRMLDKL-LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 130 (285)
Q Consensus 55 ~~~v~~l~~~~f~~~-~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~ 130 (285)
++.|.+++.++|++. ++.+++++|.||++||++|+.+.|.|+++++.+.+. +.++.+| .+.++++|++.++||++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 466899999999875 556789999999999999999999999999998543 6666665 68899999999999999
Q ss_pred EEccccc-eeecCCCchhHHHHHHHhhhc
Q psy159 131 YFRHRFP-SIYRGDLSEEEEVLQWLITQK 158 (285)
Q Consensus 131 ~~~~g~~-~~y~g~~~~~~~l~~fi~~~~ 158 (285)
+|++|+. ..+.|..+.+ +|.+++...+
T Consensus 81 ~~~~G~~~~~~~G~~~~~-~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAATKVGALSKG-QLKEFLDANL 108 (109)
T ss_pred EEeCCeEEEEecCCCCHH-HHHHHHHHhc
Confidence 9999987 4678887765 8999987654
No 45
>PHA02278 thioredoxin-like protein
Probab=99.72 E-value=7.4e-17 Score=116.23 Aligned_cols=83 Identities=18% Similarity=0.371 Sum_probs=70.6
Q ss_pred cHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--c-----ChHHHHhcCCcccCeEEEEeC
Q psy159 167 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-----DPQLAKRYSIKTFPALVYFRN 239 (285)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-----~~~~~~~~~v~~~Ptl~~~~~ 239 (285)
+.++|++.+.++++++|+|||+||++|+.+.|.++++++++.. .+.|+++ + .+.++++|+|.++||+++|++
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 4567888888899999999999999999999999999988553 4567766 2 268999999999999999999
Q ss_pred CeEE-EEecCCc
Q psy159 240 GNPL-IFEGENK 250 (285)
Q Consensus 240 g~~~-~y~g~~~ 250 (285)
|+.+ +..|..+
T Consensus 82 G~~v~~~~G~~~ 93 (103)
T PHA02278 82 GQLVKKYEDQVT 93 (103)
T ss_pred CEEEEEEeCCCC
Confidence 9987 7778654
No 46
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.7e-17 Score=135.03 Aligned_cols=103 Identities=21% Similarity=0.329 Sum_probs=90.7
Q ss_pred cceeecChhHHHHHH-h-c-CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeE
Q psy159 56 NEIEEVNRRMLDKLL-E-E-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAV 129 (285)
Q Consensus 56 ~~v~~l~~~~f~~~~-~-~-~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl 129 (285)
..|.++|+.||+..+ + + ..|++|+||+|||++|+.+.|.+++++..+++. +.++++| ++.++.+|||++.||+
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCcchhHHHHhCcCcCCeE
Confidence 349999999998875 2 3 359999999999999999999999999999765 8888877 8999999999999999
Q ss_pred EEEcccccee-ecCCCchhHHHHHHHhhhccc
Q psy159 130 VYFRHRFPSI-YRGDLSEEEEVLQWLITQKTE 160 (285)
Q Consensus 130 ~~~~~g~~~~-y~g~~~~~~~l~~fi~~~~~~ 160 (285)
+.|++|+++. |.|..... .+.+|+......
T Consensus 102 ~af~dGqpVdgF~G~qPes-qlr~~ld~~~~~ 132 (304)
T COG3118 102 YAFKDGQPVDGFQGAQPES-QLRQFLDKVLPA 132 (304)
T ss_pred EEeeCCcCccccCCCCcHH-HHHHHHHHhcCh
Confidence 9999999965 88888775 899999987754
No 47
>PRK10996 thioredoxin 2; Provisional
Probab=99.72 E-value=1.1e-16 Score=122.38 Aligned_cols=100 Identities=18% Similarity=0.369 Sum_probs=86.9
Q ss_pred cceeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEE
Q psy159 56 NEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 132 (285)
Q Consensus 56 ~~v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~ 132 (285)
..+..++.++|+.++.++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.+| +++++++|+|.++|++++|
T Consensus 35 ~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~ 113 (139)
T PRK10996 35 GEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIF 113 (139)
T ss_pred CCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEE
Confidence 3466789999999998899999999999999999999999999988854 37887776 7899999999999999999
Q ss_pred ccccce-eecCCCchhHHHHHHHhhh
Q psy159 133 RHRFPS-IYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 133 ~~g~~~-~y~g~~~~~~~l~~fi~~~ 157 (285)
++|+.+ .+.|....+ .+.+|+.+.
T Consensus 114 ~~G~~v~~~~G~~~~e-~l~~~l~~~ 138 (139)
T PRK10996 114 KNGQVVDMLNGAVPKA-PFDSWLNEA 138 (139)
T ss_pred ECCEEEEEEcCCCCHH-HHHHHHHHh
Confidence 999874 578887765 899998764
No 48
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.71 E-value=1e-16 Score=114.84 Aligned_cols=89 Identities=28% Similarity=0.432 Sum_probs=75.4
Q ss_pred HHHHHH-hc-CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccc-e
Q psy159 65 MLDKLL-EE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP-S 138 (285)
Q Consensus 65 ~f~~~~-~~-~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~-~ 138 (285)
+|++.+ ++ +++++|.||++||++|+.+.|.++++++.+++. +.++.+| ++.+|++|+|.++|++++|++|+. .
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEee
Confidence 566666 34 578999999999999999999999999998553 7777777 789999999999999999999877 4
Q ss_pred eecCCCchhHHHHHHHh
Q psy159 139 IYRGDLSEEEEVLQWLI 155 (285)
Q Consensus 139 ~y~g~~~~~~~l~~fi~ 155 (285)
.+.|..+.+ +|.+|++
T Consensus 81 ~~~g~~~~~-~l~~~l~ 96 (96)
T cd02956 81 GFQGAQPEE-QLRQMLD 96 (96)
T ss_pred eecCCCCHH-HHHHHhC
Confidence 688988775 8888863
No 49
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.70 E-value=8.5e-17 Score=116.96 Aligned_cols=92 Identities=14% Similarity=0.268 Sum_probs=78.0
Q ss_pred hHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC--CCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccce
Q psy159 64 RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPS 138 (285)
Q Consensus 64 ~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~--~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~ 138 (285)
++|+.. .+++.++|.||++||++|+.+.|.|+++++.++. .++.++.+| .+.+|++|+|.++||+++|++|...
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~ 85 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAY 85 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCce
Confidence 677775 4567999999999999999999999999998843 347777766 6899999999999999999888777
Q ss_pred eecCCCchhHHHHHHHhhh
Q psy159 139 IYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 139 ~y~g~~~~~~~l~~fi~~~ 157 (285)
.|.|..+.+ +|.+|+++.
T Consensus 86 ~~~G~~~~~-~l~~~~~~~ 103 (104)
T cd03000 86 NYRGPRTKD-DIVEFANRV 103 (104)
T ss_pred eecCCCCHH-HHHHHHHhh
Confidence 899988875 899998753
No 50
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.70 E-value=1.4e-16 Score=114.81 Aligned_cols=102 Identities=16% Similarity=0.227 Sum_probs=85.1
Q ss_pred HHHHhhcCCCcccccceeecChhHHHHHHhcCCcEEEEEeCCC--ChhHHHHHHHHHhHHhhcCCCCcEEEEeC---Chh
Q psy159 42 ILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETD--HKDSVKVLERLEKIDGETDNMDITFVKMA---DPR 116 (285)
Q Consensus 42 i~~fi~~~~~p~~~~~v~~l~~~~f~~~~~~~~~~lv~Fya~~--c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~ 116 (285)
+++++++... ..++|.+||++.+..+.+.+|.||++| |++|+.+.|.++++++++.+. +.++++| ++.
T Consensus 2 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~~ 74 (111)
T cd02965 2 LVARLQTRHG------WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQA 74 (111)
T ss_pred HhHHHHHhcC------CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCHH
Confidence 3456666555 667999999999988899999999997 999999999999999999654 6666665 789
Q ss_pred HHhhhCCCCCCeEEEEccccce-eecCCCchhHHHH
Q psy159 117 YARKWGVTKLPAVVYFRHRFPS-IYRGDLSEEEEVL 151 (285)
Q Consensus 117 l~~~~~i~~~Ptl~~~~~g~~~-~y~g~~~~~~~l~ 151 (285)
++.+|+|.+.||+++|++|+.. .+.|..... ++.
T Consensus 75 la~~f~V~sIPTli~fkdGk~v~~~~G~~~~~-e~~ 109 (111)
T cd02965 75 LAARFGVLRTPALLFFRDGRYVGVLAGIRDWD-EYV 109 (111)
T ss_pred HHHHcCCCcCCEEEEEECCEEEEEEeCccCHH-HHh
Confidence 9999999999999999999874 567876654 443
No 51
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.69 E-value=1.9e-16 Score=115.00 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=65.6
Q ss_pred hhHHHHHHh--cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccc
Q psy159 63 RRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP 137 (285)
Q Consensus 63 ~~~f~~~~~--~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~ 137 (285)
.++|+..+. ++++++|.|||+||++|+.+.|.+++++.++.+. +.|+++| +++++++|+|.+.||+++|++|+.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence 467888775 4678999999999999999999999999998654 6777776 889999999999999999999987
Q ss_pred e
Q psy159 138 S 138 (285)
Q Consensus 138 ~ 138 (285)
+
T Consensus 81 v 81 (114)
T cd02954 81 M 81 (114)
T ss_pred E
Confidence 4
No 52
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.69 E-value=1.8e-16 Score=141.86 Aligned_cols=101 Identities=14% Similarity=0.278 Sum_probs=84.6
Q ss_pred ccceeecChhHHHHHHh---cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---C-hhHH-hhhCCCCC
Q psy159 55 KNEIEEVNRRMLDKLLE---ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---D-PRYA-RKWGVTKL 126 (285)
Q Consensus 55 ~~~v~~l~~~~f~~~~~---~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~-~~l~-~~~~i~~~ 126 (285)
++.|.+||.+||+.++. .+++++|.||||||++|+.+.|.|+++|+.+++.++.++.+| + ..++ ++|+|.++
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 45699999999999985 678899999999999999999999999999965556776654 2 2454 68999999
Q ss_pred CeEEEEcccc--ceeecC-CCchhHHHHHHHhh
Q psy159 127 PAVVYFRHRF--PSIYRG-DLSEEEEVLQWLIT 156 (285)
Q Consensus 127 Ptl~~~~~g~--~~~y~g-~~~~~~~l~~fi~~ 156 (285)
||+++|++|. ++.|.| .++.+ +|+.||+.
T Consensus 430 PTii~Fk~g~~~~~~Y~~g~R~~e-~L~~Fv~~ 461 (463)
T TIGR00424 430 PTILFFPKHSSRPIKYPSEKRDVD-SLMSFVNL 461 (463)
T ss_pred ceEEEEECCCCCceeCCCCCCCHH-HHHHHHHh
Confidence 9999999875 478985 78775 99999874
No 53
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.69 E-value=2.9e-16 Score=120.79 Aligned_cols=92 Identities=20% Similarity=0.248 Sum_probs=78.4
Q ss_pred CcccccceeecChhHHHHHHhc--CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCC
Q psy159 51 VFEIKNEIEEVNRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTK 125 (285)
Q Consensus 51 ~p~~~~~v~~l~~~~f~~~~~~--~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~ 125 (285)
.|..++.+.++++++|++.+.. +++++|.||++||++|+.+.|.++++++.+.+.++.++++| +++++++|+|.+
T Consensus 23 ~~~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~ 102 (152)
T cd02962 23 LYMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVST 102 (152)
T ss_pred ccCCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCcee
Confidence 3444678999999999998753 36899999999999999999999999999865568888887 789999999988
Q ss_pred ------CCeEEEEccccce-eecC
Q psy159 126 ------LPAVVYFRHRFPS-IYRG 142 (285)
Q Consensus 126 ------~Ptl~~~~~g~~~-~y~g 142 (285)
+||+++|++|+.+ ++.|
T Consensus 103 ~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 103 SPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred cCCcCCCCEEEEEECCEEEEEEec
Confidence 9999999999874 4555
No 54
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.69 E-value=1.8e-16 Score=115.31 Aligned_cols=96 Identities=22% Similarity=0.408 Sum_probs=82.2
Q ss_pred eeecChhHHHHHHhc-CCcEEEEEeCCCChhHHHHHHHHHhHHhhcC-CCCcEEEEeC----ChhHHhhhCCCCCCeEEE
Q psy159 58 IEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKMA----DPRYARKWGVTKLPAVVY 131 (285)
Q Consensus 58 v~~l~~~~f~~~~~~-~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~-~~~v~~~~~~----~~~l~~~~~i~~~Ptl~~ 131 (285)
|.++++++|+..+.+ +++++|.||++||++|+++.|.|+++++.++ ..++.++.+| ++++|++++|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 678899999998865 4589999999999999999999999999985 3458888877 468999999999999999
Q ss_pred Ecccc--ceeecCCCchhHHHHHHH
Q psy159 132 FRHRF--PSIYRGDLSEEEEVLQWL 154 (285)
Q Consensus 132 ~~~g~--~~~y~g~~~~~~~l~~fi 154 (285)
|.+|. ...|.|.++.+ +|.+|+
T Consensus 82 ~~~~~~~~~~~~g~~~~~-~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLE-DLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHH-HHHhhC
Confidence 99873 47799998875 888875
No 55
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.69 E-value=7.1e-16 Score=111.63 Aligned_cols=84 Identities=19% Similarity=0.384 Sum_probs=73.5
Q ss_pred cccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--cChHHHHhcCCcccCeEEEEeCCeE
Q psy159 165 LITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~v~~~Ptl~~~~~g~~ 242 (285)
..+.++|+++++++++++|+|||+||++|+.+.|.+++++.++++..+.|+.+ +.++++++|+|+++||+++|++|+.
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEE
Confidence 45788899999889999999999999999999999999999997534778887 6788999999999999999999997
Q ss_pred E-EEecC
Q psy159 243 L-IFEGE 248 (285)
Q Consensus 243 ~-~y~g~ 248 (285)
+ ...|.
T Consensus 84 ~~~~~G~ 90 (102)
T cd02948 84 VAVIRGA 90 (102)
T ss_pred EEEEecC
Confidence 7 44553
No 56
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.68 E-value=4.3e-16 Score=112.93 Aligned_cols=90 Identities=17% Similarity=0.296 Sum_probs=73.5
Q ss_pred ChhHHHHHHhc--CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---C---hhHHhhhCCCCCCeEEEEc
Q psy159 62 NRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---D---PRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 62 ~~~~f~~~~~~--~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~---~~l~~~~~i~~~Ptl~~~~ 133 (285)
|.++|++.+.+ +++++|.|||+||++|+.+.|.++++++.+. ++.++.+| + ..++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 46788888864 6899999999999999999999999999983 47777765 2 3799999999999999999
Q ss_pred cccc-eeecCCCchhHHHHHHHh
Q psy159 134 HRFP-SIYRGDLSEEEEVLQWLI 155 (285)
Q Consensus 134 ~g~~-~~y~g~~~~~~~l~~fi~ 155 (285)
+|+. ..+.|.... +|.+-+.
T Consensus 80 ~G~~v~~~~G~~~~--~l~~~~~ 100 (103)
T cd02985 80 DGEKIHEEEGIGPD--ELIGDVL 100 (103)
T ss_pred CCeEEEEEeCCCHH--HHHHHHH
Confidence 9986 567885543 5666553
No 57
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.68 E-value=3.2e-16 Score=114.89 Aligned_cols=95 Identities=20% Similarity=0.342 Sum_probs=78.6
Q ss_pred cccccHHHHHHHHHh-CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---c--ChHHHHhcCCcccCeEEE
Q psy159 163 IELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---Q--DPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 163 v~~~~~~~~~~~~~~-~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~--~~~~~~~~~v~~~Ptl~~ 236 (285)
+..++.++|++.+.+ +++++|.||++||++|+.+.|.++++++.+.+ .+.++.+ . +..++++|+|+++|++++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 446888999998765 67799999999999999999999999999985 6778777 3 678999999999999999
Q ss_pred EeCCe------EEEEecCCccchhHHHHHh
Q psy159 237 FRNGN------PLIFEGENKILKGTYIGTY 260 (285)
Q Consensus 237 ~~~g~------~~~y~g~~~~e~~~~~~~~ 260 (285)
|++|+ ...|.|.++.+ .+..|+
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~--~l~~fi 108 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAK--AIVDFV 108 (109)
T ss_pred EeCCCcccccccccccCccCHH--HHHHHh
Confidence 99885 34889988633 345443
No 58
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.68 E-value=4.3e-16 Score=112.03 Aligned_cols=94 Identities=20% Similarity=0.363 Sum_probs=82.2
Q ss_pred ecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcC-CCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccc
Q psy159 60 EVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKMA---DPRYARKWGVTKLPAVVYFRHR 135 (285)
Q Consensus 60 ~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~-~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g 135 (285)
++|..+|.+.+.++++++|.||++||++|+.+.|.|+++++.++ ..++.++.+| +..+|++++|.++|++++|.++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 57889999999888899999999999999999999999999884 4458888887 5799999999999999999987
Q ss_pred --cceeecCCCchhHHHHHHH
Q psy159 136 --FPSIYRGDLSEEEEVLQWL 154 (285)
Q Consensus 136 --~~~~y~g~~~~~~~l~~fi 154 (285)
....|.|..+.+ ++.+|+
T Consensus 82 ~~~~~~~~g~~~~~-~i~~~~ 101 (101)
T cd02961 82 SKEPVKYEGPRTLE-SLVEFI 101 (101)
T ss_pred CcccccCCCCcCHH-HHHhhC
Confidence 447899988775 788774
No 59
>PLN02309 5'-adenylylsulfate reductase
Probab=99.68 E-value=3.7e-16 Score=139.75 Aligned_cols=101 Identities=14% Similarity=0.271 Sum_probs=86.5
Q ss_pred ccceeecChhHHHHHHh---cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC----ChhHHh-hhCCCCC
Q psy159 55 KNEIEEVNRRMLDKLLE---ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYAR-KWGVTKL 126 (285)
Q Consensus 55 ~~~v~~l~~~~f~~~~~---~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~----~~~l~~-~~~i~~~ 126 (285)
++.|.+++.++|+.++. .+++++|.||||||++|+.+.|.|+++++.+.+.++.++++| +..+|+ +|+|.++
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~ 423 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 423 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence 45689999999999874 578899999999999999999999999999966668888876 457886 5999999
Q ss_pred CeEEEEcccc--ceeecC-CCchhHHHHHHHhh
Q psy159 127 PAVVYFRHRF--PSIYRG-DLSEEEEVLQWLIT 156 (285)
Q Consensus 127 Ptl~~~~~g~--~~~y~g-~~~~~~~l~~fi~~ 156 (285)
||+++|++|. ++.|.| .++.+ +|++||+.
T Consensus 424 PTil~f~~g~~~~v~Y~~~~R~~~-~L~~fv~~ 455 (457)
T PLN02309 424 PTILLFPKNSSRPIKYPSEKRDVD-SLLSFVNS 455 (457)
T ss_pred eEEEEEeCCCCCeeecCCCCcCHH-HHHHHHHH
Confidence 9999999865 478986 57775 99999975
No 60
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.67 E-value=6e-16 Score=112.20 Aligned_cols=95 Identities=18% Similarity=0.343 Sum_probs=79.8
Q ss_pred cccccHHHHHHHHHh-CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEe
Q psy159 163 IELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 238 (285)
Q Consensus 163 v~~~~~~~~~~~~~~-~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~ 238 (285)
+..++.++|++.+.+ +.+++|+||++||++|+.+.|.|.++++++.+ .+.++.+ .++.++++|+|+++|++++|+
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 80 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKVFG 80 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence 346788999988765 55699999999999999999999999999886 6888888 678899999999999999999
Q ss_pred CC--eEEEEecCCccchhHHHHHh
Q psy159 239 NG--NPLIFEGENKILKGTYIGTY 260 (285)
Q Consensus 239 ~g--~~~~y~g~~~~e~~~~~~~~ 260 (285)
+| ....|.|.++.+ .+..|.
T Consensus 81 ~~~~~~~~~~g~~~~~--~l~~~~ 102 (103)
T cd03001 81 AGKNSPQDYQGGRTAK--AIVSAA 102 (103)
T ss_pred CCCcceeecCCCCCHH--HHHHHh
Confidence 88 456899988643 355664
No 61
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.67 E-value=7.9e-16 Score=113.10 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=72.6
Q ss_pred cccHHHHHHH-HH--hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEe
Q psy159 165 LITRVMLETM-VE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 238 (285)
Q Consensus 165 ~~~~~~~~~~-~~--~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~ 238 (285)
.++.++|++. +. .+++++|.||++||++|+.+.|.++++++++.+.++.++.+ .++.++++++|.++||+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 4567778654 43 47899999999999999999999999999998645888888 567899999999999999999
Q ss_pred CCeEE-EEecCCc
Q psy159 239 NGNPL-IFEGENK 250 (285)
Q Consensus 239 ~g~~~-~y~g~~~ 250 (285)
+|+.+ .+.|..+
T Consensus 88 ~g~~~~~~~G~~~ 100 (111)
T cd02963 88 NGQVTFYHDSSFT 100 (111)
T ss_pred CCEEEEEecCCCC
Confidence 99877 4467665
No 62
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.67 E-value=9.1e-16 Score=110.66 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=81.5
Q ss_pred HHHHhhhccccccccccHHHHHHHHHhCCeEEEEEECCC--ChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHh
Q psy159 151 LQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLN--CNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKR 225 (285)
Q Consensus 151 ~~fi~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~F~a~~--c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~ 225 (285)
++++....+ ...++..+|++.+..+.++++.||++| |++|+.+.|.++++++++.+ .+.|+++ +++.++.+
T Consensus 3 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~~~~la~~ 78 (111)
T cd02965 3 VARLQTRHG---WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRADEQALAAR 78 (111)
T ss_pred hHHHHHhcC---CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCCCHHHHHH
Confidence 444444443 335678889988888899999999997 99999999999999999986 6888888 78899999
Q ss_pred cCCcccCeEEEEeCCeEE-EEecCCc
Q psy159 226 YSIKTFPALVYFRNGNPL-IFEGENK 250 (285)
Q Consensus 226 ~~v~~~Ptl~~~~~g~~~-~y~g~~~ 250 (285)
|+|.++||+++|++|+.+ .+.|..+
T Consensus 79 f~V~sIPTli~fkdGk~v~~~~G~~~ 104 (111)
T cd02965 79 FGVLRTPALLFFRDGRYVGVLAGIRD 104 (111)
T ss_pred cCCCcCCEEEEEECCEEEEEEeCccC
Confidence 999999999999999987 7778665
No 63
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.66 E-value=1.1e-15 Score=109.44 Aligned_cols=80 Identities=20% Similarity=0.459 Sum_probs=70.0
Q ss_pred HHHHHHH-h-CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCeEE-
Q psy159 170 MLETMVE-E-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL- 243 (285)
Q Consensus 170 ~~~~~~~-~-~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~~- 243 (285)
+|++.+. + +++++|.||++||++|+.+.|.+++++..+.+ .+.++.+ .+..++++|+|.++|++++|++|+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEee
Confidence 4666554 4 57999999999999999999999999999986 6888888 68899999999999999999999876
Q ss_pred EEecCCc
Q psy159 244 IFEGENK 250 (285)
Q Consensus 244 ~y~g~~~ 250 (285)
.+.|.++
T Consensus 81 ~~~g~~~ 87 (96)
T cd02956 81 GFQGAQP 87 (96)
T ss_pred eecCCCC
Confidence 7888775
No 64
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.66 E-value=8.4e-16 Score=110.67 Aligned_cols=73 Identities=22% Similarity=0.467 Sum_probs=64.5
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE----cChHHHHhcCCcccCeEEEEeCCeEEEEecCCcc
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKI 251 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g~~~~ 251 (285)
.+++++|.|||+||++|+.+.|.++++++.+.+ +.++.+ .++.++++|+|.++||+++|++|...+|.|.++.
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~~~ 93 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTRTL 93 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCCCH
Confidence 378899999999999999999999999999874 667777 2578999999999999999999966699998763
No 65
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.66 E-value=2e-15 Score=109.43 Aligned_cols=81 Identities=15% Similarity=0.348 Sum_probs=70.2
Q ss_pred cHHHHHHHHHh--CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cC---hHHHHhcCCcccCeEEEEe
Q psy159 167 TRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QD---PQLAKRYSIKTFPALVYFR 238 (285)
Q Consensus 167 ~~~~~~~~~~~--~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~---~~~~~~~~v~~~Ptl~~~~ 238 (285)
+.++|++.+.+ +++++|.|||+||++|+.+.|.++++++++. ++.|+.+ ++ ..++++|+|+++||+++|+
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 46778887765 7899999999999999999999999999994 5888888 23 3789999999999999999
Q ss_pred CCeEE-EEecCC
Q psy159 239 NGNPL-IFEGEN 249 (285)
Q Consensus 239 ~g~~~-~y~g~~ 249 (285)
+|+.+ .+.|..
T Consensus 80 ~G~~v~~~~G~~ 91 (103)
T cd02985 80 DGEKIHEEEGIG 91 (103)
T ss_pred CCeEEEEEeCCC
Confidence 99876 788865
No 66
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.66 E-value=1.2e-15 Score=112.53 Aligned_cols=87 Identities=15% Similarity=0.170 Sum_probs=72.8
Q ss_pred ceeecChhHHHHHHhcC-CcEEEEEeCCCChhHHHHHHHHHhHHhhcCC-C-CcEEEEeC-----ChhHHhhhCCCCCCe
Q psy159 57 EIEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDN-M-DITFVKMA-----DPRYARKWGVTKLPA 128 (285)
Q Consensus 57 ~v~~l~~~~f~~~~~~~-~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~-~-~v~~~~~~-----~~~l~~~~~i~~~Pt 128 (285)
.+.+++.++|++.+.++ ++++|.||++||++|+.+.|.|+++++.++. . .+.++.+| +..+|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 47889999999997654 6899999999999999999999999998843 2 27777776 457999999999999
Q ss_pred EEEEccccc-----eeecCC
Q psy159 129 VVYFRHRFP-----SIYRGD 143 (285)
Q Consensus 129 l~~~~~g~~-----~~y~g~ 143 (285)
+++|++|.. ..|+|.
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~ 101 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGP 101 (114)
T ss_pred EEEECCCCccCCCCCcccCC
Confidence 999998764 346665
No 67
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.65 E-value=1.4e-15 Score=110.05 Aligned_cols=87 Identities=17% Similarity=0.452 Sum_probs=75.6
Q ss_pred cccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCc--CCeEEEEE---cChHHHHhcCCcccCeEEEE
Q psy159 163 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI--YGIHMVKI---QDPQLAKRYSIKTFPALVYF 237 (285)
Q Consensus 163 v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~--~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~ 237 (285)
+..++.++|++.+.++ +++|.||++||++|+.+.|.++++++++++ ..+.++.+ .+..++++|+|.++|++++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 3467889999988765 599999999999999999999999999875 24888888 56789999999999999999
Q ss_pred eCCeEE-EEecCCc
Q psy159 238 RNGNPL-IFEGENK 250 (285)
Q Consensus 238 ~~g~~~-~y~g~~~ 250 (285)
++|+.+ .|.|.++
T Consensus 81 ~~g~~~~~~~G~~~ 94 (102)
T cd03005 81 KDGEKVDKYKGTRD 94 (102)
T ss_pred eCCCeeeEeeCCCC
Confidence 999765 7999886
No 68
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.65 E-value=2.2e-15 Score=123.14 Aligned_cols=98 Identities=21% Similarity=0.425 Sum_probs=81.5
Q ss_pred cccccccHHHHHHHHHh-----CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccC
Q psy159 161 DRIELITRVMLETMVEE-----TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFP 232 (285)
Q Consensus 161 ~~v~~~~~~~~~~~~~~-----~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~P 232 (285)
..+..++.++|++.+.. +++++|+||++||++|+.+.|.|+++++++++ .+.++.+ .++.++++|+|+++|
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccHHHHHHcCCCcCC
Confidence 45678899999998753 47899999999999999999999999999986 6888888 678899999999999
Q ss_pred eEEEEeCCeEEEEe-cCCccchhHHHHHhh
Q psy159 233 ALVYFRNGNPLIFE-GENKILKGTYIGTYI 261 (285)
Q Consensus 233 tl~~~~~g~~~~y~-g~~~~e~~~~~~~~~ 261 (285)
|+++|++|+.+.|. |.++.+ .+..|..
T Consensus 109 Tl~~f~~G~~v~~~~G~~s~e--~L~~fi~ 136 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDRSTE--KLAAFAL 136 (224)
T ss_pred EEEEEECCEEEEeeCCCCCHH--HHHHHHH
Confidence 99999999988665 555532 2444443
No 69
>PRK10996 thioredoxin 2; Provisional
Probab=99.65 E-value=3.5e-15 Score=114.04 Aligned_cols=87 Identities=21% Similarity=0.455 Sum_probs=77.4
Q ss_pred cccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeC
Q psy159 163 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239 (285)
Q Consensus 163 v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~ 239 (285)
+..++..+|++.++++++++|.||++||++|+.+.|.++++++++.+ ++.++.+ .++.++++|+|.++|++++|++
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~ 115 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIFKN 115 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEEEC
Confidence 33567888999888899999999999999999999999999999886 6888888 6789999999999999999999
Q ss_pred CeEE-EEecCCc
Q psy159 240 GNPL-IFEGENK 250 (285)
Q Consensus 240 g~~~-~y~g~~~ 250 (285)
|+.+ .+.|...
T Consensus 116 G~~v~~~~G~~~ 127 (139)
T PRK10996 116 GQVVDMLNGAVP 127 (139)
T ss_pred CEEEEEEcCCCC
Confidence 9977 6678765
No 70
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.64 E-value=1.9e-15 Score=111.45 Aligned_cols=85 Identities=22% Similarity=0.348 Sum_probs=73.1
Q ss_pred cccccccHHHHHHHHHhC---CeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeE
Q psy159 161 DRIELITRVMLETMVEET---QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPAL 234 (285)
Q Consensus 161 ~~v~~~~~~~~~~~~~~~---~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl 234 (285)
+.+..++.++|.+.+.+. ++++|.||+|||++|+.+.|.+++++.++. ++.|+++ .+ .++++|+|+++||+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~-~l~~~~~i~~~Pt~ 80 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA-FLVNYLDIKVLPTL 80 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh-HHHHhcCCCcCCEE
Confidence 345567778998887664 899999999999999999999999999987 4888888 33 89999999999999
Q ss_pred EEEeCCeEE-EEecC
Q psy159 235 VYFRNGNPL-IFEGE 248 (285)
Q Consensus 235 ~~~~~g~~~-~y~g~ 248 (285)
++|++|+.+ .+.|.
T Consensus 81 ~~f~~G~~v~~~~G~ 95 (113)
T cd02957 81 LVYKNGELIDNIVGF 95 (113)
T ss_pred EEEECCEEEEEEecH
Confidence 999999987 66663
No 71
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.64 E-value=2.3e-15 Score=110.28 Aligned_cols=95 Identities=18% Similarity=0.450 Sum_probs=76.2
Q ss_pred cccccHHHHHHHHH---hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---c-ChHHHH-hcCCcccCeE
Q psy159 163 IELITRVMLETMVE---ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---Q-DPQLAK-RYSIKTFPAL 234 (285)
Q Consensus 163 v~~~~~~~~~~~~~---~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~-~~~~~~-~~~v~~~Ptl 234 (285)
+..++.++|+.+.. ++++++|.||++||++|+.+.|.|+++++.+++.++.++.+ . ...++. .++|.++||+
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti 82 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTI 82 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEE
Confidence 45788889988763 47899999999999999999999999999998645888888 2 456776 4999999999
Q ss_pred EEEeCCe--EEEEecC-CccchhHHHHH
Q psy159 235 VYFRNGN--PLIFEGE-NKILKGTYIGT 259 (285)
Q Consensus 235 ~~~~~g~--~~~y~g~-~~~e~~~~~~~ 259 (285)
++|++|. ...|+|. ++. ..++.|
T Consensus 83 ~~f~~~~~~~~~y~g~~~~~--~~l~~f 108 (109)
T cd02993 83 LFFPKNSRQPIKYPSEQRDV--DSLLMF 108 (109)
T ss_pred EEEcCCCCCceeccCCCCCH--HHHHhh
Confidence 9998763 5689995 542 334554
No 72
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.3e-15 Score=125.92 Aligned_cols=97 Identities=22% Similarity=0.477 Sum_probs=83.8
Q ss_pred ccccccHHHHHHH-HHh--CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEE
Q psy159 162 RIELITRVMLETM-VEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV 235 (285)
Q Consensus 162 ~v~~~~~~~~~~~-~~~--~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~ 235 (285)
.+..+|..+|+.. +.+ .+||+|+||+|||++|+.+.|.+++++.+++| .+.+++| .++.++.+|||.++||++
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 3778899999885 443 56999999999999999999999999999998 8999999 789999999999999999
Q ss_pred EEeCCeEE-EEecCCccchhHHHHHhhh
Q psy159 236 YFRNGNPL-IFEGENKILKGTYIGTYIS 262 (285)
Q Consensus 236 ~~~~g~~~-~y~g~~~~e~~~~~~~~~~ 262 (285)
+|++|+++ -|.|... |.+ +..|++
T Consensus 103 af~dGqpVdgF~G~qP-esq--lr~~ld 127 (304)
T COG3118 103 AFKDGQPVDGFQGAQP-ESQ--LRQFLD 127 (304)
T ss_pred EeeCCcCccccCCCCc-HHH--HHHHHH
Confidence 99999999 8888775 333 445544
No 73
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.64 E-value=1.4e-15 Score=110.80 Aligned_cols=92 Identities=15% Similarity=0.347 Sum_probs=76.4
Q ss_pred ccccHHHHHHHHHhCCeEEEEEEC--CCCh---hhHHHHHHHHHHHhhcCcCCeEEEEEc--------ChHHHHhcCCc-
Q psy159 164 ELITRVMLETMVEETQYLAVYFYK--LNCN---ICDQILEGLEKVDDECDIYGIHMVKIQ--------DPQLAKRYSIK- 229 (285)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~F~a--~~c~---~c~~~~~~~~~la~~~~~~~i~~~~i~--------~~~~~~~~~v~- 229 (285)
..++..+|++.+.+++.++|.||| |||+ +|+.++|.+.+.+.. +.++.++ +.++|++|+|+
T Consensus 4 v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-----v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 4 VDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-----LLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred eECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-----eEEEEEecccccchhhHHHHHHhCCCc
Confidence 478999999999999999999999 9999 999998888776533 7788882 37799999999
Q ss_pred -ccCeEEEEeCCe---EEEEecC-CccchhHHHHHhhh
Q psy159 230 -TFPALVYFRNGN---PLIFEGE-NKILKGTYIGTYIS 262 (285)
Q Consensus 230 -~~Ptl~~~~~g~---~~~y~g~-~~~e~~~~~~~~~~ 262 (285)
+||||++|++|. ++.|+|. ++. +.|+.|+.+
T Consensus 79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~--~~lv~~v~~ 114 (116)
T cd03007 79 ESYPVIYLFHGGDFENPVPYSGADVTV--DALQRFLKG 114 (116)
T ss_pred CCCCEEEEEeCCCcCCCccCCCCcccH--HHHHHHHHh
Confidence 999999999984 5799996 863 335666654
No 74
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.64 E-value=3.3e-15 Score=107.10 Aligned_cols=90 Identities=17% Similarity=0.355 Sum_probs=73.7
Q ss_pred ChhHHHHHHhcC--CcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEcccc
Q psy159 62 NRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF 136 (285)
Q Consensus 62 ~~~~f~~~~~~~--~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~ 136 (285)
+.++|++++... ++++|.||++||++|+++.|.++++++.+ ..++.++++| .+.++++|+|.++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 357788888766 89999999999999999999999999887 3358888887 67899999999999999999998
Q ss_pred cee-ecCCCchhHHHHHHH
Q psy159 137 PSI-YRGDLSEEEEVLQWL 154 (285)
Q Consensus 137 ~~~-y~g~~~~~~~l~~fi 154 (285)
.+. +.|. ..+ +|.+.+
T Consensus 80 ~~~~~~g~-~~~-~l~~~~ 96 (97)
T cd02984 80 IVDRVSGA-DPK-ELAKKV 96 (97)
T ss_pred EEEEEeCC-CHH-HHHHhh
Confidence 754 4554 333 566654
No 75
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.63 E-value=4.3e-15 Score=114.34 Aligned_cols=87 Identities=18% Similarity=0.314 Sum_probs=76.2
Q ss_pred cccccccHHHHHHHHHh--CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcc-----
Q psy159 161 DRIELITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKT----- 230 (285)
Q Consensus 161 ~~v~~~~~~~~~~~~~~--~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~----- 230 (285)
..+..++.++|++.+.+ +++++|.||++||++|+.+.|.++++++++.+.++.|+.+ .+++++++|+|++
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 45667888999998754 4689999999999999999999999999987545999999 6789999999988
Q ss_pred -cCeEEEEeCCeEE-EEec
Q psy159 231 -FPALVYFRNGNPL-IFEG 247 (285)
Q Consensus 231 -~Ptl~~~~~g~~~-~y~g 247 (285)
+||+++|++|+.+ ++.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 9999999999987 6666
No 76
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.63 E-value=3e-15 Score=108.65 Aligned_cols=88 Identities=23% Similarity=0.446 Sum_probs=76.3
Q ss_pred cccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCc-CCeEEEEE---c--ChHHHHhcCCcccCeEEE
Q psy159 163 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI---Q--DPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 163 v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i---~--~~~~~~~~~v~~~Ptl~~ 236 (285)
+..++..+|++.++++++++|.||++||++|+.+.|.++++++.+.. ..+.++.+ . +..++++++|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 34677889999998888999999999999999999999999998873 25778777 3 788999999999999999
Q ss_pred EeCCeEE-EEecCCc
Q psy159 237 FRNGNPL-IFEGENK 250 (285)
Q Consensus 237 ~~~g~~~-~y~g~~~ 250 (285)
|++|+.+ .|.|..+
T Consensus 82 ~~~g~~~~~~~g~~~ 96 (104)
T cd02997 82 FENGKFVEKYEGERT 96 (104)
T ss_pred EeCCCeeEEeCCCCC
Confidence 9999854 8888875
No 77
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.63 E-value=4e-15 Score=109.51 Aligned_cols=79 Identities=20% Similarity=0.407 Sum_probs=70.9
Q ss_pred cHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCeEE
Q psy159 167 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL 243 (285)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~~ 243 (285)
+.++|.+.+.++++++|+||++||++|+.+.|.++++++++. ++.|+++ .++.++++|+|.++||+++|++|+.+
T Consensus 11 ~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 11 DEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEE
Confidence 448899999888999999999999999999999999999987 4889999 67889999999999999999999877
Q ss_pred -EEec
Q psy159 244 -IFEG 247 (285)
Q Consensus 244 -~y~g 247 (285)
++.|
T Consensus 89 ~~~~g 93 (113)
T cd02989 89 DRIVG 93 (113)
T ss_pred EEEEC
Confidence 5554
No 78
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.63 E-value=2.5e-15 Score=110.88 Aligned_cols=85 Identities=18% Similarity=0.275 Sum_probs=72.2
Q ss_pred cceeecChhHHHHHHhcC---CcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC--ChhHHhhhCCCCCCeEE
Q psy159 56 NEIEEVNRRMLDKLLEEN---EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--DPRYARKWGVTKLPAVV 130 (285)
Q Consensus 56 ~~v~~l~~~~f~~~~~~~---~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~--~~~l~~~~~i~~~Ptl~ 130 (285)
+.+.++++++|...+.+. ++++|.||+|||++|+.+.|.++++|+.+.+ +.|+++| ...++++|+|.++||++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~~~~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAEKAFLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEchhhHHHHhcCCCcCCEEE
Confidence 347889999999887655 7899999999999999999999999999853 6777777 22899999999999999
Q ss_pred EEccccce-eecC
Q psy159 131 YFRHRFPS-IYRG 142 (285)
Q Consensus 131 ~~~~g~~~-~y~g 142 (285)
+|++|+.+ .+.|
T Consensus 82 ~f~~G~~v~~~~G 94 (113)
T cd02957 82 VYKNGELIDNIVG 94 (113)
T ss_pred EEECCEEEEEEec
Confidence 99999874 4444
No 79
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.63 E-value=2.1e-15 Score=109.63 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=75.0
Q ss_pred hHHHHHHhcCCcEEEEEeCCCChhHHHHHHHH---HhHHhhcCCCCcEEEEeC-------ChhHHhhhCCCCCCeEEEEc
Q psy159 64 RMLDKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-------DPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 64 ~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~---~~~a~~~~~~~v~~~~~~-------~~~l~~~~~i~~~Ptl~~~~ 133 (285)
+.|++.++++++++|.||++||++|+.+.+.+ .++++.+++ ++.++.+| ...++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 56788888999999999999999999999988 678887754 57777766 25789999999999999998
Q ss_pred --cccc-eeecCCCchhHHHHHHHh
Q psy159 134 --HRFP-SIYRGDLSEEEEVLQWLI 155 (285)
Q Consensus 134 --~g~~-~~y~g~~~~~~~l~~fi~ 155 (285)
+|+. ..+.|..+.+ ++.++++
T Consensus 81 ~~~g~~~~~~~G~~~~~-~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPGFLTAD-EFLEALE 104 (104)
T ss_pred CCCCCCCcccccccCHH-HHHHHhC
Confidence 5665 6788888875 7887763
No 80
>PRK09381 trxA thioredoxin; Provisional
Probab=99.62 E-value=8.8e-15 Score=107.25 Aligned_cols=89 Identities=27% Similarity=0.449 Sum_probs=76.7
Q ss_pred cccccccHHHHHHH-HHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEE
Q psy159 161 DRIELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 161 ~~v~~~~~~~~~~~-~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~ 236 (285)
+.+..++.++|++. ++.+++++|.||++||++|+.+.|.++++++++.+ ++.++.+ ..+.++++|+|.++|++++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 34556788888874 55588999999999999999999999999999986 6888888 6788999999999999999
Q ss_pred EeCCeEE-EEecCCc
Q psy159 237 FRNGNPL-IFEGENK 250 (285)
Q Consensus 237 ~~~g~~~-~y~g~~~ 250 (285)
|++|+.+ .+.|..+
T Consensus 82 ~~~G~~~~~~~G~~~ 96 (109)
T PRK09381 82 FKNGEVAATKVGALS 96 (109)
T ss_pred EeCCeEEEEecCCCC
Confidence 9999876 7778765
No 81
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.62 E-value=6e-15 Score=106.31 Aligned_cols=95 Identities=20% Similarity=0.352 Sum_probs=79.1
Q ss_pred cChhHHHHHHhc-CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEcccc
Q psy159 61 VNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF 136 (285)
Q Consensus 61 l~~~~f~~~~~~-~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~ 136 (285)
++.++|...+.+ +++++|.||++||++|+.+.|.++++++.+.+ ++.++.+| ++.++++|+|.++|++++|++|+
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 456788887755 45899999999999999999999999988853 37777776 67899999999999999999887
Q ss_pred c-eeecCCCchhHHHHHHHhhh
Q psy159 137 P-SIYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 137 ~-~~y~g~~~~~~~l~~fi~~~ 157 (285)
. ..+.|..+.+ .+.+|+.+.
T Consensus 80 ~~~~~~g~~~~~-~l~~~l~~~ 100 (101)
T TIGR01068 80 EVDRSVGALPKA-ALKQLINKN 100 (101)
T ss_pred EeeeecCCCCHH-HHHHHHHhh
Confidence 6 4567877765 899998764
No 82
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.62 E-value=4e-15 Score=107.98 Aligned_cols=89 Identities=17% Similarity=0.488 Sum_probs=75.8
Q ss_pred cccccHHHHHHHHHh-CCeEEEEEECCCChhhHHHHHHHHHHHhhcCc-CCeEEEEE--cChHHHHhcCCcccCeEEEEe
Q psy159 163 IELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI--QDPQLAKRYSIKTFPALVYFR 238 (285)
Q Consensus 163 v~~~~~~~~~~~~~~-~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i--~~~~~~~~~~v~~~Ptl~~~~ 238 (285)
+..++.++|++.+.+ +++++|+||++||++|+.+.|.++++++.+++ .++.++.+ +..+++..+++.++|++++|+
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFFP 81 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEEc
Confidence 457889999998765 58999999999999999999999999999876 25888888 445688899999999999999
Q ss_pred CCe---EEEEecCCcc
Q psy159 239 NGN---PLIFEGENKI 251 (285)
Q Consensus 239 ~g~---~~~y~g~~~~ 251 (285)
+|+ ...|.|..+.
T Consensus 82 ~~~~~~~~~~~g~~~~ 97 (104)
T cd02995 82 AGDKSNPIKYEGDRTL 97 (104)
T ss_pred CCCcCCceEccCCcCH
Confidence 886 4588998763
No 83
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.61 E-value=5.7e-15 Score=108.67 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=70.8
Q ss_pred ceeecCh-hHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEE
Q psy159 57 EIEEVNR-RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 132 (285)
Q Consensus 57 ~v~~l~~-~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~ 132 (285)
.+..+++ ++|++.+.++++++|.||+|||++|+.+.|.++++++.+.+ +.++++| .+.++++|+|.+.||+++|
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 3666765 89999998889999999999999999999999999998853 6777777 6789999999999999999
Q ss_pred ccccce
Q psy159 133 RHRFPS 138 (285)
Q Consensus 133 ~~g~~~ 138 (285)
++|+.+
T Consensus 83 k~G~~v 88 (113)
T cd02989 83 KNGKTV 88 (113)
T ss_pred ECCEEE
Confidence 999764
No 84
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.61 E-value=1.7e-13 Score=115.03 Aligned_cols=212 Identities=16% Similarity=0.285 Sum_probs=142.9
Q ss_pred ccceeecChhHHHHHHhcCCcEEEEEeCCCChhHHH-----HHH-HHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCC
Q psy159 55 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVK-----VLE-RLEKIDGETDNMDITFVKMA---DPRYARKWGVTK 125 (285)
Q Consensus 55 ~~~v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~-----~~~-~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~ 125 (285)
.+.|+.||..||.+.++..+..+|+|+.|--++-.. +.. .++-+|+-+...++.|+.+| +..+|+++|+..
T Consensus 33 kDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E 112 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE 112 (383)
T ss_dssp S--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S
T ss_pred ccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc
Confidence 445999999999999999888989999886443211 222 23334455566679999988 788999999999
Q ss_pred CCeEEEEccccceeecCCCchhHHHHHHHhhhccccccccccHHHHHHHHH-hCCeEEEEEECC-CChhhHHHHHHHHHH
Q psy159 126 LPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVE-ETQYLAVYFYKL-NCNICDQILEGLEKV 203 (285)
Q Consensus 126 ~Ptl~~~~~g~~~~y~g~~~~~~~l~~fi~~~~~~~~v~~~~~~~~~~~~~-~~~~~~v~F~a~-~c~~c~~~~~~~~~l 203 (285)
.+++.+|++|..+.|.|.++.. .+++|+.+....++-.+-+..+++.+-. +..+.+|-|+.+ .+.| ...|+++
T Consensus 113 ~~SiyVfkd~~~IEydG~~saD-tLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~----yk~FeeA 187 (383)
T PF01216_consen 113 EGSIYVFKDGEVIEYDGERSAD-TLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEH----YKEFEEA 187 (383)
T ss_dssp TTEEEEEETTEEEEE-S--SHH-HHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHH----HHHHHHH
T ss_pred cCcEEEEECCcEEEecCccCHH-HHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHH----HHHHHHH
Confidence 9999999999999999999986 9999999999866544445556655533 335666666655 4545 3567889
Q ss_pred HhhcCcCCeEEEEEcChHHHHhcCCcccCeEEEEeC--CeEEEEecCCccchhHHHHHhhhcCCCCCCCCCCCC
Q psy159 204 DDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN--GNPLIFEGENKILKGTYIGTYISTKAFSLIPFCFSE 275 (285)
Q Consensus 204 a~~~~~~~i~~~~i~~~~~~~~~~v~~~Ptl~~~~~--g~~~~y~g~~~~e~~~~~~~~~~~~~~~~~~e~~~~ 275 (285)
|+.|.+ .|+|+.+-++.+++++++. .-.+-+|+. .+|+..+|....+.. +..|++..+.|.+..++-+
T Consensus 188 Ae~F~p-~IkFfAtfd~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e~e--~~~fi~~h~rptlrkl~~~ 257 (383)
T PF01216_consen 188 AEHFQP-YIKFFATFDKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTEEE--LVEFIEEHKRPTLRKLRPE 257 (383)
T ss_dssp HHHCTT-TSEEEEE-SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--HHH--HHHHHHHT-S-SEEE--GG
T ss_pred HHhhcC-ceeEEEEecchhhhhcCcc-ccceeeeccccCCCccCCCCCCCHHH--HHHHHHHhchhHhhhCChh
Confidence 999997 6999999999999999997 778888864 678999887654543 6777777888887776644
No 85
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.60 E-value=8.6e-15 Score=105.77 Aligned_cols=94 Identities=23% Similarity=0.465 Sum_probs=79.1
Q ss_pred ccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcC-CeEEEEE---cChHHHHhcCCcccCeEEEEeCCe
Q psy159 166 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 241 (285)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~ 241 (285)
++.++|++.+.++++++|.||++||++|+.+.+.+++++..+++. ++.++.+ .++.++++|+|+++|++++|++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 467889998888899999999999999999999999999999864 3888887 678899999999999999998887
Q ss_pred -EEEEecCCccchhHHHHHhh
Q psy159 242 -PLIFEGENKILKGTYIGTYI 261 (285)
Q Consensus 242 -~~~y~g~~~~e~~~~~~~~~ 261 (285)
...|.|..+.+ .+..|+.
T Consensus 81 ~~~~~~g~~~~~--~l~~~i~ 99 (102)
T TIGR01126 81 KPVDYEGGRDLE--AIVEFVN 99 (102)
T ss_pred cceeecCCCCHH--HHHHHHH
Confidence 67899987633 2444443
No 86
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.58 E-value=1.6e-14 Score=110.67 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=76.7
Q ss_pred hhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC-CCcEEEEeCC---hhHHhhhCCCCCCeEEEEc-cccc
Q psy159 63 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMAD---PRYARKWGVTKLPAVVYFR-HRFP 137 (285)
Q Consensus 63 ~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~-~~v~~~~~~~---~~l~~~~~i~~~Ptl~~~~-~g~~ 137 (285)
...++..+..+++++|.|||+||++|+.+.|.+.++++.+.+ ..+..+.+|. ..++++|+|.++|++++|. +|+.
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 345777778889999999999999999999999999998843 3455555662 4789999999999999996 6776
Q ss_pred e-eecCCCchhHHHHHHHhhhcc
Q psy159 138 S-IYRGDLSEEEEVLQWLITQKT 159 (285)
Q Consensus 138 ~-~y~g~~~~~~~l~~fi~~~~~ 159 (285)
+ .+.|....+ ++.+++.....
T Consensus 90 v~~~~G~~~~~-~l~~~l~~l~~ 111 (142)
T cd02950 90 EGQSIGLQPKQ-VLAQNLDALVA 111 (142)
T ss_pred EEEEeCCCCHH-HHHHHHHHHHc
Confidence 4 577877664 78888877653
No 87
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.58 E-value=1.4e-14 Score=104.44 Aligned_cols=78 Identities=15% Similarity=0.315 Sum_probs=67.8
Q ss_pred HHHHHHHHH--hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCeE
Q psy159 168 RVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 168 ~~~~~~~~~--~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~ 242 (285)
.+++++.+. ++++++|.|+|+||++|+.+.|.++++|.++++ .+.|+++ +.+++++.|+|...||.++|++|+.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 356677655 489999999999999999999999999999984 3889888 7899999999999999999999987
Q ss_pred EEEe
Q psy159 243 LIFE 246 (285)
Q Consensus 243 ~~y~ 246 (285)
..-+
T Consensus 81 ~~~d 84 (114)
T cd02986 81 MKVD 84 (114)
T ss_pred EEEe
Confidence 6443
No 88
>KOG4277|consensus
Probab=99.58 E-value=3.2e-15 Score=122.80 Aligned_cols=91 Identities=20% Similarity=0.373 Sum_probs=75.2
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcC--CeEEEEE---cChHHHHhcCCcccCeEEEEeCCeEEEEecCCccc
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKIL 252 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g~~~~e 252 (285)
...|+|.||||||+||+++.|+|.+++.+++.. .++++++ ..+.++.+|+|+||||+.++++|-.+.|.|++..+
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~Kd 122 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREKD 122 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccHH
Confidence 567999999999999999999999999998853 4888888 78999999999999999999999999999999744
Q ss_pred hhHHHHHhhhcCCCCCCCC
Q psy159 253 KGTYIGTYISTKAFSLIPF 271 (285)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~e 271 (285)
+ ++ .|-+...-+.|.-
T Consensus 123 ~--ii-eFAhR~a~aiI~p 138 (468)
T KOG4277|consen 123 A--II-EFAHRCAAAIIEP 138 (468)
T ss_pred H--HH-HHHHhcccceeee
Confidence 3 34 4444444444433
No 89
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.58 E-value=1.5e-14 Score=105.05 Aligned_cols=81 Identities=14% Similarity=0.324 Sum_probs=68.8
Q ss_pred HHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCc--CCeEEEEE---cChHHHHhcCCcccCeEEEEeCCeEE
Q psy159 169 VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI--YGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL 243 (285)
Q Consensus 169 ~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~--~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~~ 243 (285)
++|++. .+++.++|.||++||++|+.+.|.++++++++++ ..+.++.+ ..+.++++|+|.++||+++|++|...
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~ 85 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAY 85 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCce
Confidence 567764 4467999999999999999999999999999853 24777777 57889999999999999999888777
Q ss_pred EEecCCc
Q psy159 244 IFEGENK 250 (285)
Q Consensus 244 ~y~g~~~ 250 (285)
.|.|.++
T Consensus 86 ~~~G~~~ 92 (104)
T cd03000 86 NYRGPRT 92 (104)
T ss_pred eecCCCC
Confidence 8899775
No 90
>PTZ00051 thioredoxin; Provisional
Probab=99.58 E-value=2.9e-14 Score=102.38 Aligned_cols=84 Identities=23% Similarity=0.445 Sum_probs=73.6
Q ss_pred ccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCC
Q psy159 164 ELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNG 240 (285)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g 240 (285)
...+.+++++.+.+++++++.||++||++|+.+.+.++++++++. ++.|+.+ .+..++++|+|+++|+++++++|
T Consensus 4 ~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 4 IVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDELSEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred EecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcchHHHHHHCCCceeeEEEEEeCC
Confidence 345677888888889999999999999999999999999999876 4788888 56789999999999999999999
Q ss_pred eEE-EEecCC
Q psy159 241 NPL-IFEGEN 249 (285)
Q Consensus 241 ~~~-~y~g~~ 249 (285)
+.+ .+.|..
T Consensus 82 ~~~~~~~G~~ 91 (98)
T PTZ00051 82 SVVDTLLGAN 91 (98)
T ss_pred eEEEEEeCCC
Confidence 877 777754
No 91
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.57 E-value=3.3e-14 Score=102.50 Aligned_cols=76 Identities=12% Similarity=0.297 Sum_probs=65.1
Q ss_pred hhHHHHHHh--cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccc
Q psy159 63 RRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP 137 (285)
Q Consensus 63 ~~~f~~~~~--~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~ 137 (285)
.+.+++.+. .+++++|.|+|+||++|+.+.|.++++|+++.+. +.|.++| .++++++|+|...||+++|++|+.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 356777665 4688999999999999999999999999999654 7777776 789999999999999999999876
Q ss_pred ee
Q psy159 138 SI 139 (285)
Q Consensus 138 ~~ 139 (285)
+.
T Consensus 81 ~~ 82 (114)
T cd02986 81 MK 82 (114)
T ss_pred EE
Confidence 43
No 92
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.57 E-value=4.6e-14 Score=101.09 Aligned_cols=82 Identities=21% Similarity=0.480 Sum_probs=70.6
Q ss_pred cHHHHHHHHHhC--CeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCe
Q psy159 167 TRVMLETMVEET--QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 241 (285)
Q Consensus 167 ~~~~~~~~~~~~--~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~ 241 (285)
+.+++++.+.+. ++++|.||++||++|+.+.+.++++++++.. .+.++.+ ..+.++++|+|.++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 356788887765 9999999999999999999999999999643 6889988 577899999999999999999998
Q ss_pred EE-EEecCC
Q psy159 242 PL-IFEGEN 249 (285)
Q Consensus 242 ~~-~y~g~~ 249 (285)
.+ .+.|..
T Consensus 80 ~~~~~~g~~ 88 (97)
T cd02984 80 IVDRVSGAD 88 (97)
T ss_pred EEEEEeCCC
Confidence 77 556643
No 93
>KOG0907|consensus
Probab=99.56 E-value=2.3e-14 Score=103.30 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=67.1
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccc-eeecCCCchhH
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP-SIYRGDLSEEE 148 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~-~~y~g~~~~~~ 148 (285)
++.++|.|||+|||+|+.+.|.+.++|.++.+ +.|+++| .+++|++++|...||+.+|++|+. ..+.|....
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~-- 96 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA-- 96 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH--
Confidence 48899999999999999999999999999965 7888777 489999999999999999999987 567776654
Q ss_pred HHHHHHh
Q psy159 149 EVLQWLI 155 (285)
Q Consensus 149 ~l~~fi~ 155 (285)
.+.+.+.
T Consensus 97 ~l~~~i~ 103 (106)
T KOG0907|consen 97 ELEKKIA 103 (106)
T ss_pred HHHHHHH
Confidence 4555554
No 94
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.56 E-value=7.9e-14 Score=106.84 Aligned_cols=98 Identities=15% Similarity=0.281 Sum_probs=75.0
Q ss_pred HHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--c---ChHHHHhcCCcccCeEEEEe-CCeE
Q psy159 169 VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q---DPQLAKRYSIKTFPALVYFR-NGNP 242 (285)
Q Consensus 169 ~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~---~~~~~~~~~v~~~Ptl~~~~-~g~~ 242 (285)
..+++.+.++++++|.||++||++|+.+.|.++++++++.+ .+.|+.+ + ...++++|+|.++|++++|. +|+.
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 34667777899999999999999999999999999999875 5667766 2 24788999999999999994 7887
Q ss_pred E-EEecCCccch-hHHHHHhhhcCCCC
Q psy159 243 L-IFEGENKILK-GTYIGTYISTKAFS 267 (285)
Q Consensus 243 ~-~y~g~~~~e~-~~~~~~~~~~~~~~ 267 (285)
+ .+.|....+. ..++..+++...++
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAGEPLP 116 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCCC
Confidence 7 7778764322 22345555544443
No 95
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.56 E-value=2.1e-14 Score=104.33 Aligned_cols=88 Identities=25% Similarity=0.527 Sum_probs=74.2
Q ss_pred ccccHHHHHHHHHh-CCeEEEEEECCCChhhHHHHHHHHHHHhhcCc-CCeEEEEE---c-ChHHHHhcCCcccCeEEEE
Q psy159 164 ELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI---Q-DPQLAKRYSIKTFPALVYF 237 (285)
Q Consensus 164 ~~~~~~~~~~~~~~-~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i---~-~~~~~~~~~v~~~Ptl~~~ 237 (285)
..++.+++++.+.+ ++++++.||++||++|+.+.|.++++++.++. ..+.++.+ . ++.++++|+|.++|++++|
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~ 82 (105)
T cd02998 3 VELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF 82 (105)
T ss_pred EEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEE
Confidence 46678888887765 55899999999999999999999999999873 25888888 4 6889999999999999999
Q ss_pred eCC--eEEEEecCCcc
Q psy159 238 RNG--NPLIFEGENKI 251 (285)
Q Consensus 238 ~~g--~~~~y~g~~~~ 251 (285)
++| +...|.|.++.
T Consensus 83 ~~~~~~~~~~~g~~~~ 98 (105)
T cd02998 83 PKGSTEPVKYEGGRDL 98 (105)
T ss_pred eCCCCCccccCCccCH
Confidence 877 34588888763
No 96
>PTZ00051 thioredoxin; Provisional
Probab=99.56 E-value=3.7e-14 Score=101.83 Aligned_cols=86 Identities=22% Similarity=0.274 Sum_probs=72.4
Q ss_pred eeec-ChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEc
Q psy159 58 IEEV-NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 58 v~~l-~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 133 (285)
+.++ +.+++++++.++++++|.||++||++|+.+.|.++++++.+.+ +.++.+| ...++++|+|.++||+++|+
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 3444 5678999998899999999999999999999999999987753 6777666 57899999999999999999
Q ss_pred cccce-eecCCCc
Q psy159 134 HRFPS-IYRGDLS 145 (285)
Q Consensus 134 ~g~~~-~y~g~~~ 145 (285)
+|+.. .+.|...
T Consensus 80 ~g~~~~~~~G~~~ 92 (98)
T PTZ00051 80 NGSVVDTLLGAND 92 (98)
T ss_pred CCeEEEEEeCCCH
Confidence 99874 5777543
No 97
>KOG1731|consensus
Probab=99.55 E-value=6.6e-15 Score=130.85 Aligned_cols=181 Identities=17% Similarity=0.228 Sum_probs=113.6
Q ss_pred ccceeecChhHHHHHHhc-CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCC--cEEEEeC-----ChhHHhhhCCCCC
Q psy159 55 KNEIEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMD--ITFVKMA-----DPRYARKWGVTKL 126 (285)
Q Consensus 55 ~~~v~~l~~~~f~~~~~~-~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~--v~~~~~~-----~~~l~~~~~i~~~ 126 (285)
.+.|++|+.++|+..+.. .+.++|.||++|||||++++|.|+++|+.+.+.. +.++.+| +..+|++|+|.+|
T Consensus 38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 477999999999998754 4589999999999999999999999999994433 5556666 7889999999999
Q ss_pred CeEEEEccccc-----eeecCCCchhHHHHHHHhhhcc----------ccccccccH----HHHHHHHHh-CCeEEEEEE
Q psy159 127 PAVVYFRHRFP-----SIYRGDLSEEEEVLQWLITQKT----------EDRIELITR----VMLETMVEE-TQYLAVYFY 186 (285)
Q Consensus 127 Ptl~~~~~g~~-----~~y~g~~~~~~~l~~fi~~~~~----------~~~v~~~~~----~~~~~~~~~-~~~~~v~F~ 186 (285)
|++.+|..+.. ..+.|..... ++.+.+..... .+..-.+.+ .++.+-+.+ ...+.+.|-
T Consensus 118 Ptlryf~~~~~~~~~G~~~~~~~~~~-ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e 196 (606)
T KOG1731|consen 118 PTLRYFPPDSQNKTDGSDVSGPVIPS-EIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFE 196 (606)
T ss_pred ceeeecCCccccCcCCCcccCCcchh-hHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEe
Confidence 99999976422 2344444333 55555544321 121112222 222222222 234455552
Q ss_pred CCCChhhHHHHHHHHHHHhhc--CcCCeEEEEE-cChHHHHhcCCcccCeEEEEeCCeEE
Q psy159 187 KLNCNICDQILEGLEKVDDEC--DIYGIHMVKI-QDPQLAKRYSIKTFPALVYFRNGNPL 243 (285)
Q Consensus 187 a~~c~~c~~~~~~~~~la~~~--~~~~i~~~~i-~~~~~~~~~~v~~~Ptl~~~~~g~~~ 243 (285)
.... .-.++.+-..+ ++..+..+.. ....+.. ++++.+|+.+++++|+..
T Consensus 197 ~~~s------~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q 249 (606)
T KOG1731|consen 197 TEPS------DLGWANLLNDLPSKQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQ 249 (606)
T ss_pred cCCc------ccHHHHHHhhccCCCcceEEEecchhccccc-cCCCCchhhhhhcCCccc
Confidence 2211 11223332233 3222333333 3334444 888999999999999755
No 98
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.55 E-value=6.6e-14 Score=105.67 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=65.0
Q ss_pred ChhHHHHHHh--cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEE-EEccc
Q psy159 62 NRRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV-YFRHR 135 (285)
Q Consensus 62 ~~~~f~~~~~--~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~-~~~~g 135 (285)
+.++|++.+. .+++++|.|||+||++|+.+.|.++++|+++.+. +.++++| .+++++.|+|.+.|+++ +|++|
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence 5788988874 4578999999999999999999999999998653 5556655 78999999999776666 89998
Q ss_pred c-cee-ecC
Q psy159 136 F-PSI-YRG 142 (285)
Q Consensus 136 ~-~~~-y~g 142 (285)
+ ... ..|
T Consensus 89 ~~~vd~~tG 97 (142)
T PLN00410 89 HIMIDLGTG 97 (142)
T ss_pred eEEEEEecc
Confidence 7 333 445
No 99
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.55 E-value=4.3e-14 Score=101.51 Aligned_cols=86 Identities=23% Similarity=0.502 Sum_probs=75.3
Q ss_pred cccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcC-cCCeEEEEE---cChHHHHhcCCcccCeEEEEeCC
Q psy159 165 LITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECD-IYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNG 240 (285)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~-~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g 240 (285)
.++.++|.+.+.++++++|.||++||++|+.+.+.++++++.++ ...+.++.+ .+..++++|+|+++|++++|++|
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 46788999999988899999999999999999999999999994 226889988 56899999999999999999887
Q ss_pred --eEEEEecCCc
Q psy159 241 --NPLIFEGENK 250 (285)
Q Consensus 241 --~~~~y~g~~~ 250 (285)
....|.|..+
T Consensus 82 ~~~~~~~~g~~~ 93 (101)
T cd02961 82 SKEPVKYEGPRT 93 (101)
T ss_pred CcccccCCCCcC
Confidence 4558888874
No 100
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.55 E-value=9.2e-14 Score=100.06 Aligned_cols=84 Identities=25% Similarity=0.508 Sum_probs=72.3
Q ss_pred ccHHHHHHHHHh-CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCe
Q psy159 166 ITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 241 (285)
Q Consensus 166 ~~~~~~~~~~~~-~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~ 241 (285)
++.+++++.+++ +++++|.||++||++|+.+.+.++++++++.+ ++.|+.+ .+..++++|+|.++|++++|++|+
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 356778887766 56999999999999999999999999988875 6889988 677899999999999999999998
Q ss_pred EE-EEecCCc
Q psy159 242 PL-IFEGENK 250 (285)
Q Consensus 242 ~~-~y~g~~~ 250 (285)
.. .+.|..+
T Consensus 80 ~~~~~~g~~~ 89 (101)
T TIGR01068 80 EVDRSVGALP 89 (101)
T ss_pred EeeeecCCCC
Confidence 66 6667765
No 101
>KOG0907|consensus
Probab=99.55 E-value=6.7e-14 Score=100.93 Aligned_cols=71 Identities=25% Similarity=0.572 Sum_probs=64.2
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCeEE-EEecCCc
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL-IFEGENK 250 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~~-~y~g~~~ 250 (285)
++.++++|||+|||+|+.+.|.+.+|+.+|.+ +.|.++ +..++++.++|...||++++++|+.+ .+-|...
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK 95 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH
Confidence 68999999999999999999999999999984 889988 45889999999999999999999876 7777653
No 102
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.54 E-value=3.1e-13 Score=108.35 Aligned_cols=149 Identities=25% Similarity=0.444 Sum_probs=121.5
Q ss_pred CccccchHHHHHcCCCCCCeEEEeecC--ccccccCCCcchHHHHHHhhcCCCcccccceeecChhHHHHHHhcCCc-EE
Q psy159 1 MVKISDTEAAAKYNIINLPSLVYFRKQ--VPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEF-VT 77 (285)
Q Consensus 1 ~~~~~~~~~~~~~~i~~~Ptl~~~~~~--~~~~y~g~~~~~~~i~~fi~~~~~p~~~~~v~~l~~~~f~~~~~~~~~-~l 77 (285)
|+.+.+.+++++++++. |+|++|+++ .+..|.|...+.++|.+||..+..|. +.++|.+++..+...+.+ ++
T Consensus 25 F~~~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~----v~~~t~~n~~~~~~~~~~~~~ 99 (184)
T PF13848_consen 25 FGVTFNEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPL----VPELTPENFEKLFSSPKPPVL 99 (184)
T ss_dssp EEEEE-HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTS----CEEESTTHHHHHHSTSSEEEE
T ss_pred EEEEcHHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccc----ccccchhhHHHHhcCCCceEE
Confidence 34567889999999988 999999985 56889998334459999999999999 999999999999988866 77
Q ss_pred EEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCC--CCCeEEEEcc--ccc-eeecCCCchhHH
Q psy159 78 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT--KLPAVVYFRH--RFP-SIYRGDLSEEEE 149 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~--~~Ptl~~~~~--g~~-~~y~g~~~~~~~ 149 (285)
+.|+.........+...++.+|+.+++. +.|+.+| .+.+++.+|+. .+|+++++.. ++. ..+.|..+.+ +
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~-~ 177 (184)
T PF13848_consen 100 ILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPE-S 177 (184)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHH-H
T ss_pred EEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHH-H
Confidence 8888777888899999999999999653 7777766 57899999998 7999999983 332 2347777775 8
Q ss_pred HHHHHhh
Q psy159 150 VLQWLIT 156 (285)
Q Consensus 150 l~~fi~~ 156 (285)
|.+|+.+
T Consensus 178 i~~Fl~d 184 (184)
T PF13848_consen 178 IEKFLND 184 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999864
No 103
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.53 E-value=4.8e-14 Score=104.03 Aligned_cols=87 Identities=15% Similarity=0.320 Sum_probs=71.9
Q ss_pred ccccccHHHHHHHHHh-CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcC--CeEEEEE-----cChHHHHhcCCcccCe
Q psy159 162 RIELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI-----QDPQLAKRYSIKTFPA 233 (285)
Q Consensus 162 ~v~~~~~~~~~~~~~~-~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i-----~~~~~~~~~~v~~~Pt 233 (285)
.+..++.++|++.+.+ +++++|.||++||++|+.+.|.|+++++++++. .+.|+.+ .+..++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 3557889999998766 569999999999999999999999999988642 3778777 2457899999999999
Q ss_pred EEEEeCCeEE-----EEecC
Q psy159 234 LVYFRNGNPL-----IFEGE 248 (285)
Q Consensus 234 l~~~~~g~~~-----~y~g~ 248 (285)
+++|++|... .|+|.
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~ 101 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGP 101 (114)
T ss_pred EEEECCCCccCCCCCcccCC
Confidence 9999988643 55555
No 104
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.53 E-value=1.3e-13 Score=104.16 Aligned_cols=82 Identities=16% Similarity=0.207 Sum_probs=69.5
Q ss_pred ccHHHHHHHHH--hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEE-EEeC
Q psy159 166 ITRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV-YFRN 239 (285)
Q Consensus 166 ~~~~~~~~~~~--~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~-~~~~ 239 (285)
-+..++++.+. ++++++|.|||+||++|+.+.|.++++++++++ .+.|+++ +++++++.|+|.+.|+++ +|++
T Consensus 9 ~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 9 HSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN-FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred CCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 46778988775 478899999999999999999999999999986 5778888 789999999999777666 9999
Q ss_pred Ce-EE-EEecC
Q psy159 240 GN-PL-IFEGE 248 (285)
Q Consensus 240 g~-~~-~y~g~ 248 (285)
|+ .+ ...|.
T Consensus 88 g~~~vd~~tG~ 98 (142)
T PLN00410 88 KHIMIDLGTGN 98 (142)
T ss_pred CeEEEEEeccc
Confidence 98 55 44563
No 105
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.53 E-value=1.1e-13 Score=99.26 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=71.3
Q ss_pred HhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccc-eeecCCCc
Q psy159 70 LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP-SIYRGDLS 145 (285)
Q Consensus 70 ~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~-~~y~g~~~ 145 (285)
.+.++++++.||++||+.|+.+.|.++++++.+.+ ++.++.+| +++++++++|.++|++++|++|+. ..+.|...
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~ 88 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKM 88 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCcc
Confidence 35678899999999999999999999999998854 37777766 778999999999999999998876 45788777
Q ss_pred hhHHHHHHHh
Q psy159 146 EEEEVLQWLI 155 (285)
Q Consensus 146 ~~~~l~~fi~ 155 (285)
.+ ++.+|++
T Consensus 89 ~~-~~~~~l~ 97 (97)
T cd02949 89 KS-EYREFIE 97 (97)
T ss_pred HH-HHHHhhC
Confidence 75 7888763
No 106
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.52 E-value=2e-13 Score=101.73 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=74.9
Q ss_pred eeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCC------------hhHHhhhC---
Q psy159 58 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD------------PRYARKWG--- 122 (285)
Q Consensus 58 v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~------------~~l~~~~~--- 122 (285)
+..++.++|.+.+.+++.++|+|+++||++|+.+.|.++++++.. +..+..+.+|. .++.++|+
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~ 86 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT 86 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcc
Confidence 667888999999999999999999999999999999999999884 33366666651 14456665
Q ss_pred -CCCCCeEEEEccccce-eecCCCchhHHHHHHHh
Q psy159 123 -VTKLPAVVYFRHRFPS-IYRGDLSEEEEVLQWLI 155 (285)
Q Consensus 123 -i~~~Ptl~~~~~g~~~-~y~g~~~~~~~l~~fi~ 155 (285)
|.+.||+++|++|+.+ ...|.....++|.+|+.
T Consensus 87 ~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 87 SFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 4559999999999874 45675443347887763
No 107
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.51 E-value=2.2e-13 Score=107.78 Aligned_cols=85 Identities=14% Similarity=0.295 Sum_probs=71.0
Q ss_pred cccccccH-HHHHHHHHhC---CeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--cChHHHHhcCCcccCeE
Q psy159 161 DRIELITR-VMLETMVEET---QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPAL 234 (285)
Q Consensus 161 ~~v~~~~~-~~~~~~~~~~---~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~v~~~Ptl 234 (285)
+.+..++. ++|.+.+... .+++|.||++||++|+.+.|.+++||.++. .++|++| +...++.+|+|.++||+
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~~l~~~f~v~~vPTl 139 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASATGASDEFDTDALPAL 139 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccchhhHHhCCCCCCCEE
Confidence 45556666 8898877653 389999999999999999999999999986 5999999 22278999999999999
Q ss_pred EEEeCCeEE-EEec
Q psy159 235 VYFRNGNPL-IFEG 247 (285)
Q Consensus 235 ~~~~~g~~~-~y~g 247 (285)
++|++|+.+ .+.|
T Consensus 140 llyk~G~~v~~~vG 153 (175)
T cd02987 140 LVYKGGELIGNFVR 153 (175)
T ss_pred EEEECCEEEEEEec
Confidence 999999977 4443
No 108
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.51 E-value=1.3e-13 Score=101.48 Aligned_cols=89 Identities=17% Similarity=0.195 Sum_probs=71.4
Q ss_pred HHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccc---ee
Q psy159 66 LDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP---SI 139 (285)
Q Consensus 66 f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~---~~ 139 (285)
|.+.+.++..++|.||++||++|+.+.|.++++++..+. +.+..+| .+.++++|+|.+.||+++|++|.. +.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~--i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDK--LKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCc--eEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 545556677788999999999999999999999987633 5566555 789999999999999999997543 46
Q ss_pred ecCCCchhHHHHHHHhhh
Q psy159 140 YRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 140 y~g~~~~~~~l~~fi~~~ 157 (285)
|.|-.... ++.+|+...
T Consensus 93 ~~G~~~~~-el~~~i~~i 109 (113)
T cd02975 93 YYGLPAGY-EFASLIEDI 109 (113)
T ss_pred EEecCchH-HHHHHHHHH
Confidence 88877665 788887654
No 109
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.51 E-value=1.3e-13 Score=123.50 Aligned_cols=99 Identities=13% Similarity=0.399 Sum_probs=79.1
Q ss_pred ccccccccHHHHHHHHH---hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--c-C-hHH-HHhcCCccc
Q psy159 160 EDRIELITRVMLETMVE---ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-D-PQL-AKRYSIKTF 231 (285)
Q Consensus 160 ~~~v~~~~~~~~~~~~~---~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-~-~~~-~~~~~v~~~ 231 (285)
...+..++.++|+..++ .+++++|.||||||++|+.+.|.|+++++++++.++.|+.+ + + ..+ +++|+|.++
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 45667899999999875 58899999999999999999999999999998644788888 2 2 234 468999999
Q ss_pred CeEEEEeCCe--EEEEec-CCccchhHHHHHh
Q psy159 232 PALVYFRNGN--PLIFEG-ENKILKGTYIGTY 260 (285)
Q Consensus 232 Ptl~~~~~g~--~~~y~g-~~~~e~~~~~~~~ 260 (285)
||+++|++|. ++.|.| .++.+ .++.|+
T Consensus 430 PTii~Fk~g~~~~~~Y~~g~R~~e--~L~~Fv 459 (463)
T TIGR00424 430 PTILFFPKHSSRPIKYPSEKRDVD--SLMSFV 459 (463)
T ss_pred ceEEEEECCCCCceeCCCCCCCHH--HHHHHH
Confidence 9999999884 578985 67533 344443
No 110
>PLN02309 5'-adenylylsulfate reductase
Probab=99.50 E-value=1.7e-13 Score=122.70 Aligned_cols=101 Identities=15% Similarity=0.413 Sum_probs=81.9
Q ss_pred cccccccccHHHHHHHHH---hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--c--ChHHHH-hcCCcc
Q psy159 159 TEDRIELITRVMLETMVE---ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q--DPQLAK-RYSIKT 230 (285)
Q Consensus 159 ~~~~v~~~~~~~~~~~~~---~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~--~~~~~~-~~~v~~ 230 (285)
+...+..++.++|++++. .+++++|.||+|||++|+.+.|.|+++++++.+.++.|+++ + +..++. +|+|.+
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence 345677899999999874 58899999999999999999999999999998656999999 3 456776 599999
Q ss_pred cCeEEEEeCCe--EEEEec-CCccchhHHHHHhh
Q psy159 231 FPALVYFRNGN--PLIFEG-ENKILKGTYIGTYI 261 (285)
Q Consensus 231 ~Ptl~~~~~g~--~~~y~g-~~~~e~~~~~~~~~ 261 (285)
+||+++|++|. ++.|.| .++. ..++.|+.
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~--~~L~~fv~ 454 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDV--DSLLSFVN 454 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCH--HHHHHHHH
Confidence 99999998774 569986 5653 33565553
No 111
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.50 E-value=1.1e-13 Score=100.49 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=68.8
Q ss_pred HHHHHHHHhCCeEEEEEECCCChhhHHHHHHH---HHHHhhcCcCCeEEEEE---c----ChHHHHhcCCcccCeEEEEe
Q psy159 169 VMLETMVEETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI---Q----DPQLAKRYSIKTFPALVYFR 238 (285)
Q Consensus 169 ~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i---~----~~~~~~~~~v~~~Ptl~~~~ 238 (285)
+.|++.++++++++|.||++||++|+.+.+.+ .++++.+.+ ++.++.+ . ...++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 45778888899999999999999999999887 578888875 6888877 2 46789999999999999998
Q ss_pred --CCeEE-EEecCCcc
Q psy159 239 --NGNPL-IFEGENKI 251 (285)
Q Consensus 239 --~g~~~-~y~g~~~~ 251 (285)
+|+.. ++.|.++.
T Consensus 81 ~~~g~~~~~~~G~~~~ 96 (104)
T cd02953 81 PGGEPEPLRLPGFLTA 96 (104)
T ss_pred CCCCCCCcccccccCH
Confidence 67654 77887763
No 112
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.49 E-value=6e-13 Score=95.34 Aligned_cols=76 Identities=25% Similarity=0.438 Sum_probs=66.8
Q ss_pred HHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCeEE-EEecCC
Q psy159 174 MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL-IFEGEN 249 (285)
Q Consensus 174 ~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~~-~y~g~~ 249 (285)
+.+++++++++|+++||+.|+.+.|.++++++++.+ ++.+..+ .+++++++++|.++|+++++++|+.+ .+.|..
T Consensus 9 ~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~ 87 (97)
T cd02949 9 YHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVK 87 (97)
T ss_pred HHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence 345688999999999999999999999999999875 6888888 57889999999999999999999876 677876
Q ss_pred c
Q psy159 250 K 250 (285)
Q Consensus 250 ~ 250 (285)
+
T Consensus 88 ~ 88 (97)
T cd02949 88 M 88 (97)
T ss_pred c
Confidence 5
No 113
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.48 E-value=4.2e-13 Score=94.54 Aligned_cols=87 Identities=23% Similarity=0.411 Sum_probs=72.7
Q ss_pred HHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccc-eee
Q psy159 65 MLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP-SIY 140 (285)
Q Consensus 65 ~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~-~~y 140 (285)
+|++.+..+++++|.||++||++|+.+.+.++++++.. .++.++.+| ...+++++++.++|+++++.+|+. ..+
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEY--PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHC--CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 56777777789999999999999999999999998873 347777666 588999999999999999999875 567
Q ss_pred cCCCchhHHHHHHH
Q psy159 141 RGDLSEEEEVLQWL 154 (285)
Q Consensus 141 ~g~~~~~~~l~~fi 154 (285)
.|..+.+ .|.+++
T Consensus 80 ~g~~~~~-~l~~~i 92 (93)
T cd02947 80 VGADPKE-ELEEFL 92 (93)
T ss_pred ecCCCHH-HHHHHh
Confidence 7777654 788876
No 114
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.46 E-value=6.5e-13 Score=96.18 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=75.2
Q ss_pred hHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCC--CCCeEEEEcc--cc
Q psy159 64 RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT--KLPAVVYFRH--RF 136 (285)
Q Consensus 64 ~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~--~~Ptl~~~~~--g~ 136 (285)
+++......++++++.|+++||++|+.+.|.++++|+++++. +.|+.+| ++.+++.+||. ++|+++++++ |+
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~ 81 (103)
T cd02982 3 ETFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGK 81 (103)
T ss_pred hHHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHhhHHHHHHcCCChhhCCEEEEEeccccc
Confidence 344444444789999999999999999999999999999754 8898888 56799999999 9999999998 66
Q ss_pred ceeecCCC-chhHHHHHHHhhh
Q psy159 137 PSIYRGDL-SEEEEVLQWLITQ 157 (285)
Q Consensus 137 ~~~y~g~~-~~~~~l~~fi~~~ 157 (285)
.+.+.+.. +.+ +|.+|+.+.
T Consensus 82 k~~~~~~~~~~~-~l~~fi~~~ 102 (103)
T cd02982 82 KYLMPEEELTAE-SLEEFVEDF 102 (103)
T ss_pred ccCCCccccCHH-HHHHHHHhh
Confidence 66665554 554 899998753
No 115
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.46 E-value=3e-13 Score=107.08 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=70.9
Q ss_pred ccceeecCh-hHHHHHHhcC---CcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCC--hhHHhhhCCCCCCe
Q psy159 55 KNEIEEVNR-RMLDKLLEEN---EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD--PRYARKWGVTKLPA 128 (285)
Q Consensus 55 ~~~v~~l~~-~~f~~~~~~~---~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~--~~l~~~~~i~~~Pt 128 (285)
.+.+.++++ ++|...+... .+++|.||++||++|+.+.|.++++|+.+. ++.|+++|. ..++.+|+|...||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASATGASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccchhhHHhCCCCCCCE
Confidence 466888988 9999887653 389999999999999999999999999885 388888873 26899999999999
Q ss_pred EEEEccccce
Q psy159 129 VVYFRHRFPS 138 (285)
Q Consensus 129 l~~~~~g~~~ 138 (285)
+++|++|+.+
T Consensus 139 lllyk~G~~v 148 (175)
T cd02987 139 LLVYKGGELI 148 (175)
T ss_pred EEEEECCEEE
Confidence 9999999864
No 116
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.46 E-value=1.4e-12 Score=97.08 Aligned_cols=88 Identities=15% Similarity=0.296 Sum_probs=67.7
Q ss_pred ccccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEc-C-----------hHHHHhcC--
Q psy159 162 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-D-----------PQLAKRYS-- 227 (285)
Q Consensus 162 ~v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-~-----------~~~~~~~~-- 227 (285)
.+..++.+++.+.+++++.++|+|+++||++|+.+.|.+++++++.+. .+.++.++ + ..+.+.|+
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~-~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKA-PIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCC-cEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 345678889999999999999999999999999999999999998432 34444442 1 13445655
Q ss_pred --CcccCeEEEEeCCeEE-EEecCCc
Q psy159 228 --IKTFPALVYFRNGNPL-IFEGENK 250 (285)
Q Consensus 228 --v~~~Ptl~~~~~g~~~-~y~g~~~ 250 (285)
|.+.||+++|++|+.+ ...|...
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~ 111 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCGSST 111 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCC
Confidence 4569999999999988 6668544
No 117
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.45 E-value=9.8e-13 Score=105.49 Aligned_cols=85 Identities=22% Similarity=0.390 Sum_probs=70.3
Q ss_pred cccccccHHHHHHHHH-hC--CeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcChHHHHhcCCcccCeEEEE
Q psy159 161 DRIELITRVMLETMVE-ET--QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYF 237 (285)
Q Consensus 161 ~~v~~~~~~~~~~~~~-~~--~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~v~~~Ptl~~~ 237 (285)
+.+..++..+|...+. ++ .+++|.||++||++|+.+.|.|++||.++. .++|+++.......+|++.++||+++|
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~~~~~~i~~lPTlliy 159 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQCIPNYPDKNLPTILVY 159 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHhHhhCCCCCCCEEEEE
Confidence 4556677888876543 33 479999999999999999999999999987 589999944455789999999999999
Q ss_pred eCCeEE-EEec
Q psy159 238 RNGNPL-IFEG 247 (285)
Q Consensus 238 ~~g~~~-~y~g 247 (285)
++|+.+ .+.|
T Consensus 160 k~G~~v~~ivG 170 (192)
T cd02988 160 RNGDIVKQFIG 170 (192)
T ss_pred ECCEEEEEEeC
Confidence 999977 5554
No 118
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.43 E-value=1.7e-12 Score=104.17 Aligned_cols=82 Identities=16% Similarity=0.256 Sum_probs=70.9
Q ss_pred ccceeecChhHHHHHHh-cC--CcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEE
Q psy159 55 KNEIEEVNRRMLDKLLE-EN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVY 131 (285)
Q Consensus 55 ~~~v~~l~~~~f~~~~~-~~--~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~ 131 (285)
.+.|.+++.++|...+. ++ .+++|.||++||++|+.+.|.|+++|+.+. .+.|++++....+..|++.+.||+++
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~~~~~~i~~lPTlli 158 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQCIPNYPDKNLPTILV 158 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHhHhhCCCCCCCEEEE
Confidence 46799999999987654 33 479999999999999999999999999985 38899998666678999999999999
Q ss_pred Eccccce
Q psy159 132 FRHRFPS 138 (285)
Q Consensus 132 ~~~g~~~ 138 (285)
|++|+.+
T Consensus 159 yk~G~~v 165 (192)
T cd02988 159 YRNGDIV 165 (192)
T ss_pred EECCEEE
Confidence 9999864
No 119
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.43 E-value=4.3e-11 Score=95.87 Aligned_cols=156 Identities=21% Similarity=0.389 Sum_probs=126.4
Q ss_pred HHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEcc--ccceeecCC-CchhHHHHHHHhhhccccccccc
Q psy159 90 KVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRH--RFPSIYRGD-LSEEEEVLQWLITQKTEDRIELI 166 (285)
Q Consensus 90 ~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~~--g~~~~y~g~-~~~~~~l~~fi~~~~~~~~v~~~ 166 (285)
.....|.++|+.+.+. +.|+.+.+.++|+++++.. |++++|++ +++..|.|. .+.+ +|.+||..+.-|. +..+
T Consensus 7 ~~~~~f~~~A~~~~~~-~~F~~~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~-~l~~fI~~~~~P~-v~~~ 82 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGD-YQFGVTFNEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPE-ELKKFIKKNSFPL-VPEL 82 (184)
T ss_dssp HHHHHHHHHHHHHTTT-SEEEEEE-HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHH-HHHHHHHHHSSTS-CEEE
T ss_pred HHHHHHHHHHHhCcCC-cEEEEEcHHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHH-HHHHHHHHhcccc-cccc
Confidence 3567889999999654 9999999999999999999 99999998 345889998 6664 9999999998777 5588
Q ss_pred cHHHHHHHHHhCCe-EEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCc--ccCeEEEEe--
Q psy159 167 TRVMLETMVEETQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIK--TFPALVYFR-- 238 (285)
Q Consensus 167 ~~~~~~~~~~~~~~-~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~--~~Ptl~~~~-- 238 (285)
+.+++..+...+.+ +++.|..........+...++.+|+++++ .+.|+.+ ..+.+++.+++. .+|+++++.
T Consensus 83 t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~ 161 (184)
T PF13848_consen 83 TPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG-KINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSN 161 (184)
T ss_dssp STTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT-TSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETT
T ss_pred chhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC-eEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECC
Confidence 89999999888766 77777777777788899999999999997 7889888 467899999998 899999997
Q ss_pred CCeEE-EEecCCc
Q psy159 239 NGNPL-IFEGENK 250 (285)
Q Consensus 239 ~g~~~-~y~g~~~ 250 (285)
.++.. .+.|..+
T Consensus 162 ~~~~~~~~~~~~~ 174 (184)
T PF13848_consen 162 KGKYYYLPEGEIT 174 (184)
T ss_dssp TSEEEE--SSCGC
T ss_pred CCcEEcCCCCCCC
Confidence 33322 2355554
No 120
>KOG0908|consensus
Probab=99.41 E-value=1.6e-12 Score=104.43 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=78.9
Q ss_pred eeec-ChhHHHHHHhc--CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEE
Q psy159 58 IEEV-NRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 131 (285)
Q Consensus 58 v~~l-~~~~f~~~~~~--~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~ 131 (285)
|..+ ++..|+.-+.. .+.++|.|+|.|||+|+.++|.|+.++.+|. +..|.++| .+..+..+||...||+++
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 4444 56778887754 3689999999999999999999999999994 37788877 678899999999999999
Q ss_pred Eccccce-eecCCCchhHHHHHHHhhhc
Q psy159 132 FRHRFPS-IYRGDLSEEEEVLQWLITQK 158 (285)
Q Consensus 132 ~~~g~~~-~y~g~~~~~~~l~~fi~~~~ 158 (285)
|++|..+ .+.|.... .|.+.+.++.
T Consensus 81 f~ng~kid~~qGAd~~--gLe~kv~~~~ 106 (288)
T KOG0908|consen 81 FRNGVKIDQIQGADAS--GLEEKVAKYA 106 (288)
T ss_pred EecCeEeeeecCCCHH--HHHHHHHHHh
Confidence 9999885 47776543 5777777765
No 121
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.39 E-value=4.3e-12 Score=93.40 Aligned_cols=78 Identities=18% Similarity=0.407 Sum_probs=64.3
Q ss_pred HHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCe---EEE
Q psy159 171 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN---PLI 244 (285)
Q Consensus 171 ~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~---~~~ 244 (285)
+.+.+.....+++.|+++||++|+.+.|.+++++..+. .+.+..+ .++.++++|+|.++||++++++|+ .+.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSD--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 44445566778899999999999999999999998863 5778887 788999999999999999999864 236
Q ss_pred EecCCc
Q psy159 245 FEGENK 250 (285)
Q Consensus 245 y~g~~~ 250 (285)
|.|-..
T Consensus 93 ~~G~~~ 98 (113)
T cd02975 93 YYGLPA 98 (113)
T ss_pred EEecCc
Confidence 878554
No 122
>KOG0908|consensus
Probab=99.39 E-value=2.4e-12 Score=103.42 Aligned_cols=98 Identities=15% Similarity=0.282 Sum_probs=77.0
Q ss_pred ccccccHHHHHHHHHh--CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEE
Q psy159 162 RIELITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 162 ~v~~~~~~~~~~~~~~--~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~ 236 (285)
++.+-++++|+..+.. .+.++|.|+|.||++|+.++|+|+.++.+|.+ ..|.++ .+...+..+||...||+++
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 3344566778776654 66899999999999999999999999999985 678888 6788899999999999999
Q ss_pred EeCCeEE-EEecCCccchhHHHHHhh
Q psy159 237 FRNGNPL-IFEGENKILKGTYIGTYI 261 (285)
Q Consensus 237 ~~~g~~~-~y~g~~~~e~~~~~~~~~ 261 (285)
|+||+.+ .+.|.--.-...++..+.
T Consensus 81 f~ng~kid~~qGAd~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 81 FRNGVKIDQIQGADASGLEEKVAKYA 106 (288)
T ss_pred EecCeEeeeecCCCHHHHHHHHHHHh
Confidence 9999877 777754322333344443
No 123
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.39 E-value=3.5e-12 Score=95.82 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=70.4
Q ss_pred hHHHHHHhcC-CcEEEEEeCCCChhHHHHHHHHH---hHHhhcCCCCcEEEEeC--C--------------hhHHhhhCC
Q psy159 64 RMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLE---KIDGETDNMDITFVKMA--D--------------PRYARKWGV 123 (285)
Q Consensus 64 ~~f~~~~~~~-~~~lv~Fya~~c~~C~~~~~~~~---~~a~~~~~~~v~~~~~~--~--------------~~l~~~~~i 123 (285)
+.++...+++ ++++|.||++||++|+++.|.+. ++.+.+++ ++.++.+| . ..++.+|+|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 4566777888 99999999999999999999885 45555532 35555554 2 578999999
Q ss_pred CCCCeEEEEccc--cc-eeecCCCchhHHHHHHHhhhc
Q psy159 124 TKLPAVVYFRHR--FP-SIYRGDLSEEEEVLQWLITQK 158 (285)
Q Consensus 124 ~~~Ptl~~~~~g--~~-~~y~g~~~~~~~l~~fi~~~~ 158 (285)
.++||++++.++ +. ..+.|....+ .+.++++...
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~-~~~~~l~~~~ 119 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLPPD-EFLAYLEYVQ 119 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCCHH-HHHHHHHHHH
Confidence 999999999874 55 4678877764 6777766543
No 124
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.38 E-value=7.2e-12 Score=88.15 Aligned_cols=79 Identities=25% Similarity=0.605 Sum_probs=67.9
Q ss_pred HHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCeEE-EE
Q psy159 170 MLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL-IF 245 (285)
Q Consensus 170 ~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~~-~y 245 (285)
+|+..++.+++++|.||++||++|+.+.+.++++++. .+ ++.++.+ ....+++.|++.++|+++++++|+.+ .+
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP-KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC-CceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 4667777779999999999999999999999999988 32 6888888 56889999999999999999999855 77
Q ss_pred ecCCc
Q psy159 246 EGENK 250 (285)
Q Consensus 246 ~g~~~ 250 (285)
.|..+
T Consensus 80 ~g~~~ 84 (93)
T cd02947 80 VGADP 84 (93)
T ss_pred ecCCC
Confidence 77664
No 125
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.38 E-value=3.9e-12 Score=86.60 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=60.8
Q ss_pred EEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHHHHH
Q psy159 78 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 154 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~~fi 154 (285)
|.||++||++|+.+.|.+++++++++. .+.++++|+.+.+.++|+.+.||+++ +|+.. +.|.....+.+.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVTDMNEILEAGVTATPGVAV--DGELV-IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHcCCCcCCEEEE--CCEEE-EEeccCCHHHHHHHh
Confidence 789999999999999999999999854 38899999888899999999999998 77665 777544323676665
No 126
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.34 E-value=9.2e-12 Score=91.61 Aligned_cols=78 Identities=9% Similarity=0.152 Sum_probs=66.0
Q ss_pred cccHHHHHHHHHh--CCeEEEEEEC-------CCChhhHHHHHHHHHHHhhcCcCCeEEEEE---c-------ChHHHHh
Q psy159 165 LITRVMLETMVEE--TQYLAVYFYK-------LNCNICDQILEGLEKVDDECDIYGIHMVKI---Q-------DPQLAKR 225 (285)
Q Consensus 165 ~~~~~~~~~~~~~--~~~~~v~F~a-------~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~-------~~~~~~~ 225 (285)
.-+.++|.+.+.+ +++++|.||| +||++|+.+.|.+++++.++.+ ++.|+++ + +..+...
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhHhc
Confidence 3456778887776 6799999999 9999999999999999999985 5888888 2 3588999
Q ss_pred cCCc-ccCeEEEEeCCeEE
Q psy159 226 YSIK-TFPALVYFRNGNPL 243 (285)
Q Consensus 226 ~~v~-~~Ptl~~~~~g~~~ 243 (285)
++|. ++||+++|+.|+.+
T Consensus 85 ~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred cCcccCCCEEEEEcCCcee
Confidence 9998 99999999887643
No 127
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.34 E-value=1e-11 Score=85.95 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=62.6
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHHHH
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQW 153 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~~f 153 (285)
+..|+++||++|+.+.|.++++++.++.. +.+..+| ++++++++|+.++|++++ +|+ ..+.|..+.+ ++.++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~~~~G~~~~~-~l~~~ 77 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-VEFIGAPTKE-ELVEA 77 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-EEEecCCCHH-HHHHH
Confidence 57899999999999999999999888543 6777766 788999999999999986 665 4788877765 78888
Q ss_pred Hhhh
Q psy159 154 LITQ 157 (285)
Q Consensus 154 i~~~ 157 (285)
+...
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 7653
No 128
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.33 E-value=8.9e-12 Score=91.69 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=62.3
Q ss_pred ChhHHHHHHhc--CCcEEEEEeC-------CCChhHHHHHHHHHhHHhhcCCCCcEEEEeC----------ChhHHhhhC
Q psy159 62 NRRMLDKLLEE--NEFVTVFFYE-------TDHKDSVKVLERLEKIDGETDNMDITFVKMA----------DPRYARKWG 122 (285)
Q Consensus 62 ~~~~f~~~~~~--~~~~lv~Fya-------~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~----------~~~l~~~~~ 122 (285)
+.++|.+.+.+ +++++|.||| +||++|+.+.|.+++++..+.+ ++.++++| +.+++++++
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhHhccC
Confidence 56778787765 6799999999 9999999999999999998863 26666665 248899999
Q ss_pred CC-CCCeEEEEccccc
Q psy159 123 VT-KLPAVVYFRHRFP 137 (285)
Q Consensus 123 i~-~~Ptl~~~~~g~~ 137 (285)
|. +.||+++|+.|..
T Consensus 87 I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 87 LTTGVPTLLRWKTPQR 102 (119)
T ss_pred cccCCCEEEEEcCCce
Confidence 98 9999999987654
No 129
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.32 E-value=2.6e-11 Score=91.06 Aligned_cols=81 Identities=19% Similarity=0.374 Sum_probs=63.8
Q ss_pred HHHHHHHHhC-CeEEEEEECCCChhhHHHHHHHH---HHHhhcCcCCeEEEEE--c--------------ChHHHHhcCC
Q psy159 169 VMLETMVEET-QYLAVYFYKLNCNICDQILEGLE---KVDDECDIYGIHMVKI--Q--------------DPQLAKRYSI 228 (285)
Q Consensus 169 ~~~~~~~~~~-~~~~v~F~a~~c~~c~~~~~~~~---~la~~~~~~~i~~~~i--~--------------~~~~~~~~~v 228 (285)
+.+++.++++ ++++|.||++||++|+.+.+.+. .+.+.+.+ ++.+..+ + ...++.+|+|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 4567778888 99999999999999999998874 56555553 5666666 2 2578999999
Q ss_pred cccCeEEEEeC--CeEE-EEecCCc
Q psy159 229 KTFPALVYFRN--GNPL-IFEGENK 250 (285)
Q Consensus 229 ~~~Ptl~~~~~--g~~~-~y~g~~~ 250 (285)
.++||++++.+ |+.+ ++.|..+
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~ 107 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLP 107 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCC
Confidence 99999999975 4665 7778765
No 130
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.30 E-value=2.6e-11 Score=87.74 Aligned_cols=70 Identities=16% Similarity=0.289 Sum_probs=61.9
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCc--ccCeEEEEeC--CeEEEEecC
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIK--TFPALVYFRN--GNPLIFEGE 248 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~--~~Ptl~~~~~--g~~~~y~g~ 248 (285)
++++++.|+++||++|+.+.+.++++|+++++ ++.|+.+ +++.+++.|+|. ++|+++++++ |+.+.+.+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~ 88 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEE 88 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcc
Confidence 68899999999999999999999999999997 7999999 567799999999 9999999998 665555444
No 131
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.29 E-value=4.9e-10 Score=104.79 Aligned_cols=179 Identities=15% Similarity=0.275 Sum_probs=130.8
Q ss_pred Cc-EEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEc-cccc--eeecCCCch
Q psy159 74 EF-VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR-HRFP--SIYRGDLSE 146 (285)
Q Consensus 74 ~~-~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~-~g~~--~~y~g~~~~ 146 (285)
.+ .++.|+.+.|..|.++...+++++..-+. +.+...| +..++++|++...|++.++. +|.. +.|.|-..-
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~--i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G 443 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFASLSEK--LNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG 443 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHhcCCc--EEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence 44 57788999999999999999999854443 4444333 67899999999999999995 4533 889997776
Q ss_pred hHHHHHHHhhhcccc-ccccccHHHHHHHHHhCCeE-EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cChHHH
Q psy159 147 EEEVLQWLITQKTED-RIELITRVMLETMVEETQYL-AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLA 223 (285)
Q Consensus 147 ~~~l~~fi~~~~~~~-~v~~~~~~~~~~~~~~~~~~-~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~ 223 (285)
. ++..||....+-+ .-..++.+..+.+.+=++++ +-.|.+++|++|..+...+++++....+....+..+ ..++++
T Consensus 444 ~-Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 522 (555)
T TIGR03143 444 H-ELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLK 522 (555)
T ss_pred H-hHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHH
Confidence 5 7888888766532 33355666665554335665 445689999999999999999998865323444444 789999
Q ss_pred HhcCCcccCeEEEEeCCeEEEEecCCccchhHHHHHh
Q psy159 224 KRYSIKTFPALVYFRNGNPLIFEGENKILKGTYIGTY 260 (285)
Q Consensus 224 ~~~~v~~~Ptl~~~~~g~~~~y~g~~~~e~~~~~~~~ 260 (285)
++|+|.++|++++ ||+ +.+.|..+ .+ .++.|+
T Consensus 523 ~~~~v~~vP~~~i--~~~-~~~~G~~~-~~-~~~~~~ 554 (555)
T TIGR03143 523 DEYGIMSVPAIVV--DDQ-QVYFGKKT-IE-EMLELI 554 (555)
T ss_pred HhCCceecCEEEE--CCE-EEEeeCCC-HH-HHHHhh
Confidence 9999999999988 665 55778774 33 345543
No 132
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.28 E-value=3.2e-09 Score=89.63 Aligned_cols=230 Identities=19% Similarity=0.276 Sum_probs=153.6
Q ss_pred cchHHHHHcCCCCCCeEEEeecCccccccCCCcchHHHHHHhhcCCCcccccceeecC-hhHHHHHHh-cCCcEEEEEeC
Q psy159 5 SDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVN-RRMLDKLLE-ENEFVTVFFYE 82 (285)
Q Consensus 5 ~~~~~~~~~~i~~~Ptl~~~~~~~~~~y~g~~~~~~~i~~fi~~~~~p~~~~~v~~l~-~~~f~~~~~-~~~~~lv~Fya 82 (285)
.+.++++++|+..-+++.+|++|..+.|+|.+... -++.||..-...+ |..++ ..++...-. ....-+|-|+.
T Consensus 100 Kd~klAKKLgv~E~~SiyVfkd~~~IEydG~~saD-tLVeFl~dl~edP----VeiIn~~~e~~~Fe~ied~~klIGyFk 174 (383)
T PF01216_consen 100 KDAKLAKKLGVEEEGSIYVFKDGEVIEYDGERSAD-TLVEFLLDLLEDP----VEIINNKHELKAFERIEDDIKLIGYFK 174 (383)
T ss_dssp TTHHHHHHHT--STTEEEEEETTEEEEE-S--SHH-HHHHHHHHHHSSS----EEEE-SHHHHHHHHH--SS-EEEEE-S
T ss_pred HHHHHHHhcCccccCcEEEEECCcEEEecCccCHH-HHHHHHHHhcccc----hhhhcChhhhhhhhhcccceeEEEEeC
Confidence 46799999999999999999999999999998777 9999998865434 76665 444444432 23566777776
Q ss_pred CC-ChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEcc--ccceeecCCCchhHHHHHHHhhhcc
Q psy159 83 TD-HKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRH--RFPSIYRGDLSEEEEVLQWLITQKT 159 (285)
Q Consensus 83 ~~-c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~~--g~~~~y~g~~~~~~~l~~fi~~~~~ 159 (285)
+. ..| ...|+++|..+... |.|..+-++.+|++++++ .-.+-+|.+ ..|+...|...++.++++|+.++..
T Consensus 175 ~~~s~~----yk~FeeAAe~F~p~-IkFfAtfd~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r 248 (383)
T PF01216_consen 175 SEDSEH----YKEFEEAAEHFQPY-IKFFATFDKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR 248 (383)
T ss_dssp STTSHH----HHHHHHHHHHCTTT-SEEEEE-SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S
T ss_pred CCCcHH----HHHHHHHHHhhcCc-eeEEEEecchhhhhcCcc-ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhch
Confidence 64 444 44678899999776 999999999999999997 778888886 5677777766666799999999986
Q ss_pred ccccccccHHHHHHHHHh-CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcC-CeEEEEE---c----ChHHHHhcCCc-
Q psy159 160 EDRIELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI---Q----DPQLAKRYSIK- 229 (285)
Q Consensus 160 ~~~v~~~~~~~~~~~~~~-~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i---~----~~~~~~~~~v~- 229 (285)
+...+.-..+.|+.+-.. +...+|-|....-+....+..+++++|+..... ++.|..| + -+-+.+.|+|.
T Consensus 249 ptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl 328 (383)
T PF01216_consen 249 PTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDL 328 (383)
T ss_dssp -SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-T
T ss_pred hHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccc
Confidence 655544444446666554 666777787778888899999999999997753 4888888 2 23456778886
Q ss_pred ccCeEEEEe--CCeEEEE
Q psy159 230 TFPALVYFR--NGNPLIF 245 (285)
Q Consensus 230 ~~Ptl~~~~--~g~~~~y 245 (285)
.-|.|-+.. +...+=+
T Consensus 329 ~~PqIGvVnvtdadsvW~ 346 (383)
T PF01216_consen 329 SRPQIGVVNVTDADSVWM 346 (383)
T ss_dssp TS-EEEEEETTTSEEEEC
T ss_pred cCCceeEEeccccccchh
Confidence 349888885 3444433
No 133
>KOG0912|consensus
Probab=99.27 E-value=9.6e-12 Score=102.65 Aligned_cols=95 Identities=19% Similarity=0.387 Sum_probs=79.6
Q ss_pred cHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCc----CCeEEEEE---cChHHHHhcCCcccCeEEEEeC
Q psy159 167 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI----YGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 239 (285)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~----~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~ 239 (285)
+.++++.++.+.+.++|.|||+||.-.+.+.|+|+++|..++. .++.++++ .+..++.+|.|..|||+.+|++
T Consensus 2 t~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 2 TSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred ccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 4567888899999999999999999999999999999988763 25788888 6788999999999999999999
Q ss_pred CeEE--EEecCCccchhHHHHHhhhc
Q psy159 240 GNPL--IFEGENKILKGTYIGTYIST 263 (285)
Q Consensus 240 g~~~--~y~g~~~~e~~~~~~~~~~~ 263 (285)
|... .|.|.|+- .+++.+..++
T Consensus 82 G~~~~rEYRg~RsV--eaL~efi~kq 105 (375)
T KOG0912|consen 82 GEMMKREYRGQRSV--EALIEFIEKQ 105 (375)
T ss_pred cchhhhhhccchhH--HHHHHHHHHH
Confidence 9865 79999974 3445555443
No 134
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.26 E-value=2e-11 Score=90.31 Aligned_cols=75 Identities=4% Similarity=0.095 Sum_probs=57.1
Q ss_pred hhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhc-CCCCcEEEEeC--ChhHHhhhCCCC--CCeEEEEc-ccc
Q psy159 63 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGET-DNMDITFVKMA--DPRYARKWGVTK--LPAVVYFR-HRF 136 (285)
Q Consensus 63 ~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~-~~~~v~~~~~~--~~~l~~~~~i~~--~Ptl~~~~-~g~ 136 (285)
.+.+.....++++++|.|||+||++|+.+.|.+.+.+... ...++..+.++ ......+|++.+ +||++++. +|+
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 3445555677899999999999999999999998876654 22346666666 234567899987 99999997 676
Q ss_pred c
Q psy159 137 P 137 (285)
Q Consensus 137 ~ 137 (285)
.
T Consensus 89 ~ 89 (117)
T cd02959 89 V 89 (117)
T ss_pred C
Confidence 5
No 135
>PTZ00062 glutaredoxin; Provisional
Probab=99.26 E-value=5.9e-11 Score=95.62 Aligned_cols=77 Identities=12% Similarity=0.248 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHhC-CeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcChHHHHhcCCcccCeEEEEeCCeEE-
Q psy159 166 ITRVMLETMVEET-QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL- 243 (285)
Q Consensus 166 ~~~~~~~~~~~~~-~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~v~~~Ptl~~~~~g~~~- 243 (285)
.+.+++++.++++ +.++++|+|+||++|+.+.+.+.+|++++. .+.|+.++.. |+|.++|++++|++|+.+
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d-----~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA-----DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc-----cCcccceEEEEEECCEEEe
Confidence 4567788888754 778999999999999999999999999997 5999999433 999999999999999987
Q ss_pred EEecCC
Q psy159 244 IFEGEN 249 (285)
Q Consensus 244 ~y~g~~ 249 (285)
++.|..
T Consensus 77 r~~G~~ 82 (204)
T PTZ00062 77 SLEGCN 82 (204)
T ss_pred eeeCCC
Confidence 777754
No 136
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.26 E-value=6.9e-11 Score=80.44 Aligned_cols=65 Identities=17% Similarity=0.323 Sum_probs=56.5
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcChHHHHhcCCcccCeEEEEeCCeEEEEecCCc
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGENK 250 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g~~~ 250 (285)
.|.||++||++|+.+.|.++++++++.. ++.+.++++.+.+.++++.+.|++++ +|+.+ +.|...
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~ 66 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVTDMNEILEAGVTATPGVAV--DGELV-IMGKIP 66 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHcCCCcCCEEEE--CCEEE-EEeccC
Confidence 3789999999999999999999999875 68899997677788999999999999 88766 777543
No 137
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.20 E-value=2.1e-10 Score=79.26 Aligned_cols=66 Identities=29% Similarity=0.457 Sum_probs=56.6
Q ss_pred EEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCeEEEEecCCc
Q psy159 181 LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENK 250 (285)
Q Consensus 181 ~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g~~~ 250 (285)
.+..|+++||++|+.+.+.++++++++.. .+.+..+ .+++++++++++++|++++ +|+ ..+.|..+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~~~~G~~~ 70 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-VEFIGAPT 70 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-EEEecCCC
Confidence 46789999999999999999999999875 5778888 6788999999999999986 776 47788764
No 138
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.17 E-value=1.3e-10 Score=86.02 Aligned_cols=73 Identities=11% Similarity=0.314 Sum_probs=54.0
Q ss_pred HHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE----cChHHHHhcCCcc--cCeEEEEe-CCeE
Q psy159 170 MLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----QDPQLAKRYSIKT--FPALVYFR-NGNP 242 (285)
Q Consensus 170 ~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----~~~~~~~~~~v~~--~Ptl~~~~-~g~~ 242 (285)
.++....++++++|.|||+||++|+.+.|.+.+.+..... ...|+.+ ......+.|++.+ +||++++. +|+.
T Consensus 11 al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 11 GIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 3444556689999999999999999999999987665432 2334444 2224557888876 99999995 8876
Q ss_pred E
Q psy159 243 L 243 (285)
Q Consensus 243 ~ 243 (285)
+
T Consensus 90 ~ 90 (117)
T cd02959 90 H 90 (117)
T ss_pred c
Confidence 4
No 139
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.13 E-value=3.5e-10 Score=105.52 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=72.9
Q ss_pred ChhHHHHHHh----cCCcEEEEEeCCCChhHHHHHHHH---HhHHhhcCCCCcEEEEeC-------ChhHHhhhCCCCCC
Q psy159 62 NRRMLDKLLE----ENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-------DPRYARKWGVTKLP 127 (285)
Q Consensus 62 ~~~~f~~~~~----~~~~~lv~Fya~~c~~C~~~~~~~---~~~a~~~~~~~v~~~~~~-------~~~l~~~~~i~~~P 127 (285)
+.+++++.++ ++++++|+|||+||++|+.+++.. +++.+.+++ +.++++| +.+++++|++.++|
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~--~~~v~vDvt~~~~~~~~l~~~~~v~g~P 536 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD--TVLLQADVTANNAEDVALLKHYNVLGLP 536 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC--CEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence 5677777653 368999999999999999999875 667777653 6666665 35789999999999
Q ss_pred eEEEEc-cccc---eeecCCCchhHHHHHHHhhh
Q psy159 128 AVVYFR-HRFP---SIYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 128 tl~~~~-~g~~---~~y~g~~~~~~~l~~fi~~~ 157 (285)
|+++|+ +|+. .++.|..+.+ ++.+++++.
T Consensus 537 t~~~~~~~G~~i~~~r~~G~~~~~-~f~~~L~~~ 569 (571)
T PRK00293 537 TILFFDAQGQEIPDARVTGFMDAA-AFAAHLRQL 569 (571)
T ss_pred EEEEECCCCCCcccccccCCCCHH-HHHHHHHHh
Confidence 999997 5765 3678888775 888888764
No 140
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.11 E-value=3e-10 Score=83.43 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=55.2
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHh---HHhhcCCCCcEEEEeC--C---------------------hhHHhhhCCCC
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEK---IDGETDNMDITFVKMA--D---------------------PRYARKWGVTK 125 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~---~a~~~~~~~v~~~~~~--~---------------------~~l~~~~~i~~ 125 (285)
+++++++.|++|||++|+++.+.+.+ +...++. ++.++.++ + ..+++++||.+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 56889999999999999999998875 4444421 24444333 2 34888999999
Q ss_pred CCeEEEEc-cccce-eecCCCchhHHHHHHH
Q psy159 126 LPAVVYFR-HRFPS-IYRGDLSEEEEVLQWL 154 (285)
Q Consensus 126 ~Ptl~~~~-~g~~~-~y~g~~~~~~~l~~fi 154 (285)
+||++++. +|+.+ .+.|..+.+ +|.+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~-~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPE-ELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HH-HHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHH-HHHhhC
Confidence 99999997 57764 688988875 777654
No 141
>PHA02125 thioredoxin-like protein
Probab=99.10 E-value=6.7e-10 Score=75.41 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=45.9
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccc-eeecCC
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP-SIYRGD 143 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~-~~y~g~ 143 (285)
++.||++||++|+.+.|.+++++ +.++++| .++++++|+|.++||++ +|+. -.+.|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~ 62 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGV 62 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence 68999999999999999998763 3456665 68899999999999987 4554 356674
No 142
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.09 E-value=9.1e-10 Score=81.92 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=58.0
Q ss_pred ChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHH-H--HhHHhhcCCCCcEEEEeC---ChhHHh--------hhCCCCCC
Q psy159 62 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLER-L--EKIDGETDNMDITFVKMA---DPRYAR--------KWGVTKLP 127 (285)
Q Consensus 62 ~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~-~--~~~a~~~~~~~v~~~~~~---~~~l~~--------~~~i~~~P 127 (285)
+++.+....+++++++|.|+++||+.|+.|.+. | .++++.+.. ++.++.+| .+++++ .||+.++|
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 567788888899999999999999999999874 4 456666633 36777776 445554 35899999
Q ss_pred eEEEEcc-ccce
Q psy159 128 AVVYFRH-RFPS 138 (285)
Q Consensus 128 tl~~~~~-g~~~ 138 (285)
+++++.+ |+++
T Consensus 83 t~vfl~~~G~~~ 94 (124)
T cd02955 83 LNVFLTPDLKPF 94 (124)
T ss_pred EEEEECCCCCEE
Confidence 9999976 6653
No 143
>PHA02125 thioredoxin-like protein
Probab=99.01 E-value=2e-09 Score=73.09 Aligned_cols=57 Identities=26% Similarity=0.447 Sum_probs=46.9
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCeEE-EEecC
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL-IFEGE 248 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~~-~y~g~ 248 (285)
++.|+++||++|+.+.|.+++++ ..++++ .+.+++++|+|.++||++ +|+.+ .+.|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~ 62 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGV 62 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence 68999999999999999998763 345666 578899999999999987 67765 67774
No 144
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.01 E-value=5.5e-09 Score=77.73 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=55.7
Q ss_pred cHHHHHHHHHhCCeEEEEEECCCChhhHHHHH-HHH--HHHhhcCcCCeEEEEE---cChHHHH--------hcCCcccC
Q psy159 167 TRVMLETMVEETQYLAVYFYKLNCNICDQILE-GLE--KVDDECDIYGIHMVKI---QDPQLAK--------RYSIKTFP 232 (285)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~-~~~--~la~~~~~~~i~~~~i---~~~~~~~--------~~~v~~~P 232 (285)
+.+.++...+++++++|.|+++||+.|+.|.+ .|. +++..+.. +..++.+ +.+++.+ .|++.++|
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 45667788888999999999999999999976 333 45555443 4556666 4455544 35899999
Q ss_pred eEEEE-eCCeEE
Q psy159 233 ALVYF-RNGNPL 243 (285)
Q Consensus 233 tl~~~-~~g~~~ 243 (285)
+++++ .+|+++
T Consensus 83 t~vfl~~~G~~~ 94 (124)
T cd02955 83 LNVFLTPDLKPF 94 (124)
T ss_pred EEEEECCCCCEE
Confidence 99999 467765
No 145
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.01 E-value=2.1e-09 Score=90.99 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=66.5
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCC------------hhHHhhhCCCCCCeEEEEcc-ccce-
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD------------PRYARKWGVTKLPAVVYFRH-RFPS- 138 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~------------~~l~~~~~i~~~Ptl~~~~~-g~~~- 138 (285)
+++++|.||++||++|+.+.|.+++++++++ ..+..+.+|. ..+++++||.++|+++++++ |+.+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 5789999999999999999999999999885 3355556552 46889999999999999986 5443
Q ss_pred -eecCCCchhHHHHHHHhhhcc
Q psy159 139 -IYRGDLSEEEEVLQWLITQKT 159 (285)
Q Consensus 139 -~y~g~~~~~~~l~~fi~~~~~ 159 (285)
...|..+.+ +|.+.+.....
T Consensus 245 ~v~~G~~s~~-eL~~~i~~~a~ 265 (271)
T TIGR02740 245 PIGFGVMSAD-ELVDRILLAAH 265 (271)
T ss_pred EEEeCCCCHH-HHHHHHHHHhc
Confidence 355777664 78887765543
No 146
>KOG1731|consensus
Probab=99.01 E-value=1.1e-10 Score=104.46 Aligned_cols=81 Identities=19% Similarity=0.401 Sum_probs=67.8
Q ss_pred ccccccccHHHHHHHHHh-CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcC-C-eEEEEE-----cChHHHHhcCCccc
Q psy159 160 EDRIELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-G-IHMVKI-----QDPQLAKRYSIKTF 231 (285)
Q Consensus 160 ~~~v~~~~~~~~~~~~~~-~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~-~-i~~~~i-----~~~~~~~~~~v~~~ 231 (285)
.+.+..++..+|+..+.. .+..+|.||++|||||+.++|.|+++|+.+..- . +.++.| .|..+|+.|+|+++
T Consensus 38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 356678999999998766 448899999999999999999999999998742 1 555555 68889999999999
Q ss_pred CeEEEEeCC
Q psy159 232 PALVYFRNG 240 (285)
Q Consensus 232 Ptl~~~~~g 240 (285)
|+|.+|+.+
T Consensus 118 Ptlryf~~~ 126 (606)
T KOG1731|consen 118 PTLRYFPPD 126 (606)
T ss_pred ceeeecCCc
Confidence 999999643
No 147
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.99 E-value=1.6e-09 Score=98.73 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=67.8
Q ss_pred HhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEe------------------------------C-ChhHH
Q psy159 70 LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM------------------------------A-DPRYA 118 (285)
Q Consensus 70 ~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~------------------------------~-~~~l~ 118 (285)
+..+++++|.|||+||++|++..|.+++++++++..++.++.+ | +..++
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 3467899999999999999999999999999885333333221 1 45688
Q ss_pred hhhCCCCCCeEEEEc-cccc-eeecCCCchhHHHHHHHhhh
Q psy159 119 RKWGVTKLPAVVYFR-HRFP-SIYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 119 ~~~~i~~~Ptl~~~~-~g~~-~~y~g~~~~~~~l~~fi~~~ 157 (285)
+.|+|.++|+++++. +|+. ..+.|....+ +|.++|+..
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~e-eL~a~Ie~~ 172 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEA-QALALIRNP 172 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHH-HHHHHHHHh
Confidence 899999999997764 6766 4578888875 899998843
No 148
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.99 E-value=3.5e-09 Score=70.15 Aligned_cols=61 Identities=26% Similarity=0.490 Sum_probs=49.8
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCeEEEEec
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEG 247 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g 247 (285)
+..|+++||++|+.+.+.+++++.... ++.+..+ +++++++++++.++|++++ +| .+.|.|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~-~~~~~g 66 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAAEFPDLADEYGVMSVPAIVI--NG-KVEFVG 66 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcccCHhHHHHcCCcccCEEEE--CC-EEEEec
Confidence 678999999999999999999987654 4777777 5678999999999999876 45 355554
No 149
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.99 E-value=1.8e-09 Score=79.25 Aligned_cols=74 Identities=20% Similarity=0.376 Sum_probs=51.7
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHH---HHhhcCcCCeEEEEE--cC---------------------hHHHHhcCCcc
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEK---VDDECDIYGIHMVKI--QD---------------------PQLAKRYSIKT 230 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~---la~~~~~~~i~~~~i--~~---------------------~~~~~~~~v~~ 230 (285)
++++++++|+++||++|+++.+.+.. +...++. ++.+..+ .. ..+.+.++|++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 47889999999999999999988874 4555543 3455555 11 34889999999
Q ss_pred cCeEEEEe-CCeEE-EEecCCcc
Q psy159 231 FPALVYFR-NGNPL-IFEGENKI 251 (285)
Q Consensus 231 ~Ptl~~~~-~g~~~-~y~g~~~~ 251 (285)
+||++++. +|+.+ .+.|..+.
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~ 105 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSP 105 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--H
T ss_pred cCEEEEEcCCCCEEEEecCCCCH
Confidence 99999995 78866 78898864
No 150
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.97 E-value=1e-08 Score=79.28 Aligned_cols=85 Identities=13% Similarity=0.252 Sum_probs=61.3
Q ss_pred HhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCC-------------hhHH-hhh---CCCCCCeEEEE
Q psy159 70 LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD-------------PRYA-RKW---GVTKLPAVVYF 132 (285)
Q Consensus 70 ~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~-------------~~l~-~~~---~i~~~Ptl~~~ 132 (285)
+..++..+|.|||+||++|++..|.+++++++++ ..+..+.+|. .... ..+ ++.++|+.+++
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 3445667999999999999999999999998873 3354555552 2233 345 78999999999
Q ss_pred cc-ccc-e-eecCCCchhHHHHHHHhh
Q psy159 133 RH-RFP-S-IYRGDLSEEEEVLQWLIT 156 (285)
Q Consensus 133 ~~-g~~-~-~y~g~~~~~~~l~~fi~~ 156 (285)
.. |.. . .+.|..+.+ ++.+.+.+
T Consensus 126 D~~G~~i~~~~~G~~s~~-~l~~~I~~ 151 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEA-ELANRMDE 151 (153)
T ss_pred eCCCCEEEEEeecccCHH-HHHHHHHH
Confidence 75 443 3 477888765 67666654
No 151
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.96 E-value=2.2e-09 Score=71.15 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=44.2
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEE
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 131 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~ 131 (285)
++.|+++||++|+.+.+.+++++....+ +.+..+| ++++++++|+.+.|++++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~--i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPN--ISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCc--eEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 6789999999999999999999776533 5555554 678999999999999866
No 152
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.93 E-value=7.4e-09 Score=82.10 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=66.6
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-------------------------ChhHHhhhCCCCC
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------------------------DPRYARKWGVTKL 126 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-------------------------~~~l~~~~~i~~~ 126 (285)
.+++++|.||++||+.|+...+.+.++.+++.+.++.++.++ +..+++.|++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 467899999999999999999999999999855445444332 3467899999999
Q ss_pred CeEEEEcc-ccce-eecCCCchhHHHHHHHhhh
Q psy159 127 PAVVYFRH-RFPS-IYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 127 Ptl~~~~~-g~~~-~y~g~~~~~~~l~~fi~~~ 157 (285)
|+++++.+ |+.. .+.|....+ ++.+++.+.
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~-~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEE-QLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHH-HHHHHHHHh
Confidence 99998874 6553 578888775 788887653
No 153
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.90 E-value=7.8e-09 Score=77.15 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=60.7
Q ss_pred hHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCc---------------------EEEEeCChhHHhhhC
Q psy159 64 RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDI---------------------TFVKMADPRYARKWG 122 (285)
Q Consensus 64 ~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v---------------------~~~~~~~~~l~~~~~ 122 (285)
+.+......+++++|.||++||++|+.+.|.+.++++.+.-..+ .++.-.+..++++|+
T Consensus 11 ~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (123)
T cd03011 11 EQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWG 90 (123)
T ss_pred CEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCC
Confidence 33333333558899999999999999999999988776421111 111112457999999
Q ss_pred CCCCCeEEEEccccc-eeecCCCchhHHHHH
Q psy159 123 VTKLPAVVYFRHRFP-SIYRGDLSEEEEVLQ 152 (285)
Q Consensus 123 i~~~Ptl~~~~~g~~-~~y~g~~~~~~~l~~ 152 (285)
|.+.|+++++.+++. ..+.|..+.+ +|.+
T Consensus 91 i~~~P~~~vid~~gi~~~~~g~~~~~-~~~~ 120 (123)
T cd03011 91 VSVTPAIVIVDPGGIVFVTTGVTSEW-GLRL 120 (123)
T ss_pred CCcccEEEEEcCCCeEEEEeccCCHH-HHHh
Confidence 999999999987553 3466766654 5543
No 154
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.90 E-value=6.3e-09 Score=78.66 Aligned_cols=67 Identities=13% Similarity=0.253 Sum_probs=52.0
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC--CCcE--EEEeC-C------------------------hhHHhhhC
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDIT--FVKMA-D------------------------PRYARKWG 122 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~--~~v~--~~~~~-~------------------------~~l~~~~~ 122 (285)
.+++++|.||++||+.|++..|.+.++.+++.. .++. .+.+| . ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 467899999999999999999999999888742 2343 34444 1 35678899
Q ss_pred CCCCCeEEEEc-cccce
Q psy159 123 VTKLPAVVYFR-HRFPS 138 (285)
Q Consensus 123 i~~~Ptl~~~~-~g~~~ 138 (285)
+.++|+++++. +|+.+
T Consensus 97 v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 97 IEGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCCEEEEECCCCCEE
Confidence 99999999997 46543
No 155
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.89 E-value=3.3e-07 Score=85.31 Aligned_cols=173 Identities=14% Similarity=0.146 Sum_probs=120.8
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEccccc--eeecCCCchhHHH
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFP--SIYRGDLSEEEEV 150 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~--~~y~g~~~~~~~l 150 (285)
..++-+.++.+.|..|.++...+++++..-.+ +.+...+.. ...|++.+..+|.. +.|.|-..-. ++
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~--i~~~~~~~~--------~~~p~~~~~~~~~~~~i~f~g~P~g~-Ef 86 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLSDK--ITVEEDSLD--------VRKPSFSITRPGEDTGVRFAGIPMGH-EF 86 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEccCC--------CCCCEEEEEcCCccceEEEEecCccH-HH
Confidence 34554444445899999999999998876543 443222211 34799999876643 7899977765 89
Q ss_pred HHHHhhhcc-ccccccccHHHHHHHHHhCCe-EEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHh
Q psy159 151 LQWLITQKT-EDRIELITRVMLETMVEETQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKR 225 (285)
Q Consensus 151 ~~fi~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~ 225 (285)
..||....+ ...-..++.+..+.+.+=+++ -+..|.++.|++|..+...+++++.... ++..-.+ ..++++++
T Consensus 87 ~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~~~~~~~ 164 (517)
T PRK15317 87 TSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALFQDEVEA 164 (517)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhCHhHHHh
Confidence 999887665 223345566665544332444 4778999999999999999999988644 4665555 78999999
Q ss_pred cCCcccCeEEEEeCCeEEEEecCCccchhHHHHHhhhc
Q psy159 226 YSIKTFPALVYFRNGNPLIFEGENKILKGTYIGTYIST 263 (285)
Q Consensus 226 ~~v~~~Ptl~~~~~g~~~~y~g~~~~e~~~~~~~~~~~ 263 (285)
|++.++|++++ +|+ ..+.|....+ .++..+.+.
T Consensus 165 ~~v~~VP~~~i--~~~-~~~~g~~~~~--~~~~~~~~~ 197 (517)
T PRK15317 165 RNIMAVPTVFL--NGE-EFGQGRMTLE--EILAKLDTG 197 (517)
T ss_pred cCCcccCEEEE--CCc-EEEecCCCHH--HHHHHHhcc
Confidence 99999999976 565 4577777533 356666543
No 156
>KOG0913|consensus
Probab=98.89 E-value=7.3e-10 Score=88.55 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=90.9
Q ss_pred cccccceeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCe
Q psy159 52 FEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPA 128 (285)
Q Consensus 52 p~~~~~v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Pt 128 (285)
|..+..+..+|.+|...+++. -|+++|+||||+.|+.+.|.|++.|.--.+++|.++.+| ++-|..+|-+...||
T Consensus 20 ~~r~s~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLpt 97 (248)
T KOG0913|consen 20 PRRSSKLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPT 97 (248)
T ss_pred ccccceeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecce
Confidence 333446888999999887654 589999999999999999999999988777889999888 889999999999999
Q ss_pred EEEEccccceeecCCCchhHHHHHHHhhhc
Q psy159 129 VVYFRHRFPSIYRGDLSEEEEVLQWLITQK 158 (285)
Q Consensus 129 l~~~~~g~~~~y~g~~~~~~~l~~fi~~~~ 158 (285)
|.-.++|.--+|.|.|+.. +++.|+..+.
T Consensus 98 IYHvkDGeFrrysgaRdk~-dfisf~~~r~ 126 (248)
T KOG0913|consen 98 IYHVKDGEFRRYSGARDKN-DFISFEEHRE 126 (248)
T ss_pred EEEeeccccccccCcccch-hHHHHHHhhh
Confidence 9999999999999999986 8999987653
No 157
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.88 E-value=2.3e-08 Score=74.47 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=80.7
Q ss_pred eeecChhHHHHHHhcCCcEEEEEeCC--CChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEE
Q psy159 58 IEEVNRRMLDKLLEENEFVTVFFYET--DHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 132 (285)
Q Consensus 58 v~~l~~~~f~~~~~~~~~~lv~Fya~--~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~ 132 (285)
...++..+++.++......+++|-.+ .++.+...+-.++++++++.+.++.++++| ++.++.+|||.++||+++|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred CCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 34477788999987776665555433 567788889999999999964447777776 8999999999999999999
Q ss_pred ccccce-eecCCCchhHHHHHHHhhhccc
Q psy159 133 RHRFPS-IYRGDLSEEEEVLQWLITQKTE 160 (285)
Q Consensus 133 ~~g~~~-~y~g~~~~~~~l~~fi~~~~~~ 160 (285)
++|+.+ ...|..... .+.++|.+.+..
T Consensus 99 kdGk~v~~i~G~~~k~-~l~~~I~~~L~~ 126 (132)
T PRK11509 99 TGGNYRGVLNGIHPWA-ELINLMRGLVEP 126 (132)
T ss_pred ECCEEEEEEeCcCCHH-HHHHHHHHHhcC
Confidence 999985 577877775 899999877653
No 158
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.87 E-value=1.6e-08 Score=74.45 Aligned_cols=40 Identities=13% Similarity=0.307 Sum_probs=33.1
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
++++++|.||++||++|+...|.++++++++.+ ++.+..+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEE
Confidence 468899999999999999999999999888764 4555444
No 159
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.86 E-value=1.1e-08 Score=75.25 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=39.2
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEe-C-----ChhHHhhhCCCCCCeE
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM-A-----DPRYARKWGVTKLPAV 129 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~-~-----~~~l~~~~~i~~~Ptl 129 (285)
++++++|.||++||++|++..|.++++++.+.+ ++.++.+ + ...+++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 468899999999999999999999999887733 2333322 1 2234455555555543
No 160
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.86 E-value=1.3e-08 Score=72.32 Aligned_cols=64 Identities=23% Similarity=0.510 Sum_probs=50.6
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcC-cCCeEEEEE----------------------------cChHHHHhcCC
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECD-IYGIHMVKI----------------------------QDPQLAKRYSI 228 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~-~~~i~~~~i----------------------------~~~~~~~~~~v 228 (285)
+++++|+||++||++|+...|.+.++.++++ +.++.+..+ ....+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4789999999999999999999999999999 336777777 12347778889
Q ss_pred cccCeEEEEe-CCe
Q psy159 229 KTFPALVYFR-NGN 241 (285)
Q Consensus 229 ~~~Ptl~~~~-~g~ 241 (285)
.++|+++++. +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999988885 453
No 161
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.86 E-value=3.2e-08 Score=83.83 Aligned_cols=72 Identities=25% Similarity=0.374 Sum_probs=56.7
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEc------------ChHHHHhcCCcccCeEEEEeC-CeEE-
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ------------DPQLAKRYSIKTFPALVYFRN-GNPL- 243 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~------------~~~~~~~~~v~~~Ptl~~~~~-g~~~- 243 (285)
+++++|+||++||++|+.+.|.++++++++.- .+..+.++ +..++++++|.++|++++++. |+.+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~-~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI-EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCc-EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 67899999999999999999999999999852 34334442 246889999999999999985 5544
Q ss_pred -EEecCCc
Q psy159 244 -IFEGENK 250 (285)
Q Consensus 244 -~y~g~~~ 250 (285)
...|..+
T Consensus 245 ~v~~G~~s 252 (271)
T TIGR02740 245 PIGFGVMS 252 (271)
T ss_pred EEEeCCCC
Confidence 3457665
No 162
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.86 E-value=1.1e-08 Score=93.20 Aligned_cols=75 Identities=17% Similarity=0.368 Sum_probs=59.8
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-------------------------------cChHHHHh
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-------------------------------QDPQLAKR 225 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------------------------------~~~~~~~~ 225 (285)
.+++++|.|||+||++|+.+.|.+++++++++..++.+..+ .+..+.+.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 57899999999999999999999999999887333443322 34568889
Q ss_pred cCCcccCeEEEE-eCCeEE-EEecCCcc
Q psy159 226 YSIKTFPALVYF-RNGNPL-IFEGENKI 251 (285)
Q Consensus 226 ~~v~~~Ptl~~~-~~g~~~-~y~g~~~~ 251 (285)
|+|.++|+++++ ++|+.+ .+.|.+..
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~ 162 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISE 162 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCH
Confidence 999999999666 788876 77788753
No 163
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.86 E-value=1.5e-08 Score=94.65 Aligned_cols=82 Identities=17% Similarity=0.342 Sum_probs=63.7
Q ss_pred cHHHHHHHHH----hCCeEEEEEECCCChhhHHHHHHH---HHHHhhcCcCCeEEEEE--c-----ChHHHHhcCCcccC
Q psy159 167 TRVMLETMVE----ETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI--Q-----DPQLAKRYSIKTFP 232 (285)
Q Consensus 167 ~~~~~~~~~~----~~~~~~v~F~a~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i--~-----~~~~~~~~~v~~~P 232 (285)
+.+++++.++ ++++++|+|||+||++|+.+.+.. .++.++++ ++.+.++ + +.+++++|++.++|
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~P 536 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLP 536 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence 5567777654 368999999999999999998864 56777776 3667666 1 35788999999999
Q ss_pred eEEEEe-CCeEE---EEecCCc
Q psy159 233 ALVYFR-NGNPL---IFEGENK 250 (285)
Q Consensus 233 tl~~~~-~g~~~---~y~g~~~ 250 (285)
++++|+ +|+.+ ++.|..+
T Consensus 537 t~~~~~~~G~~i~~~r~~G~~~ 558 (571)
T PRK00293 537 TILFFDAQGQEIPDARVTGFMD 558 (571)
T ss_pred EEEEECCCCCCcccccccCCCC
Confidence 999996 78763 6678775
No 164
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.85 E-value=9.7e-09 Score=78.48 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=50.1
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC-------CCcEEEEeC----------------------------Chh
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-------MDITFVKMA----------------------------DPR 116 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~-------~~v~~~~~~----------------------------~~~ 116 (285)
.+++++|.|||+||+.|++..|.+.++.+.++. .++.++.++ ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 568999999999999999999999998765521 134444221 125
Q ss_pred HHhhhCCCCCCeEEEEcc-ccce
Q psy159 117 YARKWGVTKLPAVVYFRH-RFPS 138 (285)
Q Consensus 117 l~~~~~i~~~Ptl~~~~~-g~~~ 138 (285)
++++|++.++|+++++.. |+.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEE
Confidence 778899999999999985 5443
No 165
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.84 E-value=1.7e-08 Score=71.78 Aligned_cols=62 Identities=19% Similarity=0.400 Sum_probs=47.6
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhcC-CCCcEEEEe--C--------------------------ChhHHhhhCC
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKM--A--------------------------DPRYARKWGV 123 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~-~~~v~~~~~--~--------------------------~~~l~~~~~i 123 (285)
+++++|.|||+||++|++..|.+.++.++++ +.++.++.+ | ...+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4789999999999999999999999999996 444555532 2 2346677888
Q ss_pred CCCCeEEEEcc
Q psy159 124 TKLPAVVYFRH 134 (285)
Q Consensus 124 ~~~Ptl~~~~~ 134 (285)
.++|+++++.+
T Consensus 81 ~~iP~~~lld~ 91 (95)
T PF13905_consen 81 NGIPTLVLLDP 91 (95)
T ss_dssp TSSSEEEEEET
T ss_pred CcCCEEEEECC
Confidence 88998888865
No 166
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.83 E-value=1.8e-08 Score=76.26 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=51.1
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCC--CcEE--EEeCC--------------------------hhHHhhh
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITF--VKMAD--------------------------PRYARKW 121 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~--~v~~--~~~~~--------------------------~~l~~~~ 121 (285)
.++.++|.||++||++|+...|.++++++.+++. ++.+ +.+|. ..+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4688999999999999999999999998888432 4444 33331 1356679
Q ss_pred CCCCCCeEEEEcc-ccce
Q psy159 122 GVTKLPAVVYFRH-RFPS 138 (285)
Q Consensus 122 ~i~~~Ptl~~~~~-g~~~ 138 (285)
++.++|+++++.. |+.+
T Consensus 96 ~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred CCCCCCEEEEECCCCCEE
Confidence 9999999999974 5443
No 167
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.83 E-value=2.7e-08 Score=69.68 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=53.5
Q ss_pred CcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-ChhHHhhhCCCCCCeEEEEccccceeecCCCch
Q psy159 74 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSE 146 (285)
Q Consensus 74 ~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~ 146 (285)
..-+..|+++||++|....+.+++++....+..+..+.++ .++++.+|||.+.|++++ +|+. .+.|..+.
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-~~~G~~~~ 83 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-FGFGRMTL 83 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-EEeCCCCH
Confidence 3457889999999999999999999987754334444444 678999999999999965 6654 44675543
No 168
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.83 E-value=2.2e-08 Score=76.59 Aligned_cols=71 Identities=17% Similarity=0.331 Sum_probs=53.0
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcC-------CeEEEEE--------------------------c--ChH
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-------GIHMVKI--------------------------Q--DPQ 221 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~-------~i~~~~i--------------------------~--~~~ 221 (285)
.+++++|+|||+||++|++..|.+.++.+++++. ++.+..+ . ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4689999999999999999999999887655421 2444444 0 125
Q ss_pred HHHhcCCcccCeEEEEe-CCeEEEEec
Q psy159 222 LAKRYSIKTFPALVYFR-NGNPLIFEG 247 (285)
Q Consensus 222 ~~~~~~v~~~Ptl~~~~-~g~~~~y~g 247 (285)
+++.|++.++|+++++. +|+.+.-.|
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~~~ 130 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAANA 130 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEeeCh
Confidence 77889999999999995 777654444
No 169
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.83 E-value=2.2e-08 Score=75.65 Aligned_cols=67 Identities=21% Similarity=0.436 Sum_probs=53.0
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcC--CeEEEEE--c-C------------------------hHHHHhcC
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI--Q-D------------------------PQLAKRYS 227 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i--~-~------------------------~~~~~~~~ 227 (285)
.+++++|+||++||++|+...|.+.++.+++... ++.+..+ + . ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4678999999999999999999999998887642 3545544 1 1 35778899
Q ss_pred CcccCeEEEEe-CCeEE
Q psy159 228 IKTFPALVYFR-NGNPL 243 (285)
Q Consensus 228 v~~~Ptl~~~~-~g~~~ 243 (285)
|.++|+++++. +|+.+
T Consensus 97 v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 97 IEGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCCEEEEECCCCCEE
Confidence 99999999996 77654
No 170
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.82 E-value=2.9e-08 Score=78.79 Aligned_cols=85 Identities=11% Similarity=0.071 Sum_probs=60.5
Q ss_pred hcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEE-----------------------EEeC-ChhHHhhhCCCCC
Q psy159 71 EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITF-----------------------VKMA-DPRYARKWGVTKL 126 (285)
Q Consensus 71 ~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~-----------------------~~~~-~~~l~~~~~i~~~ 126 (285)
..+++++|.||++||++|+++.|.++++++. +..+.. +..| +..++++|++.++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 3578999999999999999999999888654 111111 1123 4466778999999
Q ss_pred CeEEEEc-cccc-eeecCCCchhHHHHHHHhhhc
Q psy159 127 PAVVYFR-HRFP-SIYRGDLSEEEEVLQWLITQK 158 (285)
Q Consensus 127 Ptl~~~~-~g~~-~~y~g~~~~~~~l~~fi~~~~ 158 (285)
|+.+++. +|+. ..+.|..+.+ ++.+++.+..
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~-~l~~~l~~~~ 171 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNE-VWTEGFLPAM 171 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHH-HHHHHHHHHh
Confidence 9766664 6765 4577877765 7888776543
No 171
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.81 E-value=7.9e-08 Score=71.61 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=71.4
Q ss_pred cccccHHHHHHHHHhCCeEEEEEECC--CChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEE
Q psy159 163 IELITRVMLETMVEETQYLAVYFYKL--NCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 237 (285)
Q Consensus 163 v~~~~~~~~~~~~~~~~~~~v~F~a~--~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~ 237 (285)
...++..+++.++......+++|-.+ .++.+.-+.-++++++++|.+.+++++++ .++.++.+|+|.++||+++|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred CCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 33456688888888877776666432 45666678888999999998545899999 78999999999999999999
Q ss_pred eCCeEE-EEecCCcc
Q psy159 238 RNGNPL-IFEGENKI 251 (285)
Q Consensus 238 ~~g~~~-~y~g~~~~ 251 (285)
++|+.+ ...|.+..
T Consensus 99 kdGk~v~~i~G~~~k 113 (132)
T PRK11509 99 TGGNYRGVLNGIHPW 113 (132)
T ss_pred ECCEEEEEEeCcCCH
Confidence 999988 77787653
No 172
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.81 E-value=2.9e-08 Score=75.13 Aligned_cols=70 Identities=19% Similarity=0.389 Sum_probs=53.4
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcC--CeEEEEE--c-C-------------------------hHHHHhc
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI--Q-D-------------------------PQLAKRY 226 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i--~-~-------------------------~~~~~~~ 226 (285)
.+++++|.||++||++|+...|.++++.+++++. ++.+..+ + . ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3689999999999999999999999998887752 3555444 1 1 2456679
Q ss_pred CCcccCeEEEEe-CCeEEEEe
Q psy159 227 SIKTFPALVYFR-NGNPLIFE 246 (285)
Q Consensus 227 ~v~~~Ptl~~~~-~g~~~~y~ 246 (285)
+|.++|+++++. +|+.+...
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCCEEEEECCCCCEEchh
Confidence 999999999995 67655333
No 173
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.80 E-value=1.9e-08 Score=73.50 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=53.5
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEe--CC------------------------hhHHhhhCCCCC
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--AD------------------------PRYARKWGVTKL 126 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~--~~------------------------~~l~~~~~i~~~ 126 (285)
+++++|.||++||++|+...+.+.++.+.++..++.++.+ +. ..+++.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 6789999999999999999999999999985444555544 43 678899999999
Q ss_pred CeEEEEcc-ccc
Q psy159 127 PAVVYFRH-RFP 137 (285)
Q Consensus 127 Ptl~~~~~-g~~ 137 (285)
|+++++.+ |+.
T Consensus 99 P~~~l~d~~g~v 110 (116)
T cd02966 99 PTTFLIDRDGRI 110 (116)
T ss_pred ceEEEECCCCcE
Confidence 99999974 544
No 174
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.80 E-value=2.6e-08 Score=74.80 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=55.0
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEE-------------------------eC-ChhHHhhhCCCC
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK-------------------------MA-DPRYARKWGVTK 125 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~-------------------------~~-~~~l~~~~~i~~ 125 (285)
.+++++|.||++||++|++..|.++++++..+ +.++. .| +..+++.|++.+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~---~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~ 100 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR---VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG 100 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC---cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC
Confidence 36789999999999999999999999987652 22221 22 456788899999
Q ss_pred CCeEEEEc-cccc-eeecCCCchh
Q psy159 126 LPAVVYFR-HRFP-SIYRGDLSEE 147 (285)
Q Consensus 126 ~Ptl~~~~-~g~~-~~y~g~~~~~ 147 (285)
+|+.+++. +|+. ..+.|..+.+
T Consensus 101 ~P~~~~ld~~G~v~~~~~G~~~~~ 124 (127)
T cd03010 101 VPETFLIDGDGIIRYKHVGPLTPE 124 (127)
T ss_pred CCeEEEECCCceEEEEEeccCChH
Confidence 99666664 6765 4677877653
No 175
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.77 E-value=9.2e-08 Score=66.98 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=53.7
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCeEEEEecCC
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGEN 249 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g~~ 249 (285)
+..-+..|+++||++|..+.+.+++++..+. ++.+..+ +.++++.+|+|.++|++++ +|+ ..+.|..
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~-~~~~G~~ 81 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE-LFGFGRM 81 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE-EEEeCCC
Confidence 3445777899999999999999999998875 3666655 6778999999999999975 776 4556744
No 176
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.77 E-value=5.3e-08 Score=78.12 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=58.4
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC--------------------------ChhHHhhhCCCC
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------------------------DPRYARKWGVTK 125 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~--------------------------~~~l~~~~~i~~ 125 (285)
.+++++|.||++||++|++..|.+.++++. ++.++.++ ...+++.|++.+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 578899999999999999999999888652 23333321 123455789999
Q ss_pred CCeEEEEc-cccc-eeecCCCchhHHHHHHHhhh
Q psy159 126 LPAVVYFR-HRFP-SIYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 126 ~Ptl~~~~-~g~~-~~y~g~~~~~~~l~~fi~~~ 157 (285)
+|+.+++. +|+. ..+.|..+.+ .+.+.++..
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~-~l~~~i~~~ 175 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPR-VWESEIKPL 175 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHH-HHHHHHHHH
Confidence 99777775 6765 5677888765 666666543
No 177
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.76 E-value=4.1e-08 Score=71.63 Aligned_cols=70 Identities=24% Similarity=0.438 Sum_probs=57.4
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--cC------------------------hHHHHhcCCccc
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QD------------------------PQLAKRYSIKTF 231 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~------------------------~~~~~~~~v~~~ 231 (285)
++++++.||++||++|+...+.+.++..++...++.++.+ +. ..+.+.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 6789999999999999999999999999986435777777 33 678999999999
Q ss_pred CeEEEEe-CCeEE-EEec
Q psy159 232 PALVYFR-NGNPL-IFEG 247 (285)
Q Consensus 232 Ptl~~~~-~g~~~-~y~g 247 (285)
|+++++. +|+.+ .|.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 9999984 67654 4443
No 178
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.74 E-value=4.6e-08 Score=97.47 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=68.0
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEe-----C-------------------------ChhHHhhh
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM-----A-------------------------DPRYARKW 121 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~-----~-------------------------~~~l~~~~ 121 (285)
.+++++|.|||+||++|+...|.++++.+++++.++.++.+ | ...+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 47899999999999999999999999999996555655543 1 23567789
Q ss_pred CCCCCCeEEEEc-cccc-eeecCCCchhHHHHHHHhhhc
Q psy159 122 GVTKLPAVVYFR-HRFP-SIYRGDLSEEEEVLQWLITQK 158 (285)
Q Consensus 122 ~i~~~Ptl~~~~-~g~~-~~y~g~~~~~~~l~~fi~~~~ 158 (285)
+|.++|+++++. +|+. ..+.|....+ .+.+++...+
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~-~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRK-DLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHH-HHHHHHHHHH
Confidence 999999999995 6776 4577877664 7888877653
No 179
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.72 E-value=4.2e-08 Score=73.65 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=54.8
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--------------------------cChHHHHhcCCcc
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--------------------------QDPQLAKRYSIKT 230 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------------------------~~~~~~~~~~v~~ 230 (285)
.+++++|.||++||++|+...|.++++++++. +.+..+ ....+++.|++.+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~---~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~ 100 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR---VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG 100 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC---cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC
Confidence 36889999999999999999999999987762 222222 3456788899999
Q ss_pred cCeEEEE-eCCeEE-EEecCCc
Q psy159 231 FPALVYF-RNGNPL-IFEGENK 250 (285)
Q Consensus 231 ~Ptl~~~-~~g~~~-~y~g~~~ 250 (285)
+|+.+++ ++|+.+ .+.|..+
T Consensus 101 ~P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 101 VPETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred CCeEEEECCCceEEEEEeccCC
Confidence 9966666 688865 7778775
No 180
>KOG0914|consensus
Probab=98.71 E-value=3e-08 Score=78.44 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=71.0
Q ss_pred cccceeec-ChhHHHHHHhc--CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCC---
Q psy159 54 IKNEIEEV-NRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT--- 124 (285)
Q Consensus 54 ~~~~v~~l-~~~~f~~~~~~--~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~--- 124 (285)
.++.+..+ +.+.++..+.. ...|+|.||+-|.+.|.++.|.+.+++.++...+..|+++| .++.+.+|+|.
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCc
Confidence 35678888 56666666644 36799999999999999999999999999977779999998 78999999886
Q ss_pred ---CCCeEEEEccccc
Q psy159 125 ---KLPAVVYFRHRFP 137 (285)
Q Consensus 125 ---~~Ptl~~~~~g~~ 137 (285)
..||+++|++|+.
T Consensus 202 ~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKE 217 (265)
T ss_pred ccccCCeEEEEccchh
Confidence 4799999999875
No 181
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.70 E-value=2e-07 Score=68.59 Aligned_cols=89 Identities=18% Similarity=0.332 Sum_probs=66.3
Q ss_pred HHHHHhcCCcEEEEEeCCCChhHHHHHHH-H--HhHHhhcCCCCcEEEEeC-----ChhHHhhhCCCCCCeEEEEcc--c
Q psy159 66 LDKLLEENEFVTVFFYETDHKDSVKVLER-L--EKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFRH--R 135 (285)
Q Consensus 66 f~~~~~~~~~~lv~Fya~~c~~C~~~~~~-~--~~~a~~~~~~~v~~~~~~-----~~~l~~~~~i~~~Ptl~~~~~--g 135 (285)
++...+++++++|+|+++||..|+.+... | +++.+.++. +..+..+| ...++..|++.++|++.++.+ |
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g 88 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTG 88 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccC
Confidence 34445667899999999999999999774 4 556666643 35555555 347899999999999999975 5
Q ss_pred cc-eeecCCCchhHHHHHHHhh
Q psy159 136 FP-SIYRGDLSEEEEVLQWLIT 156 (285)
Q Consensus 136 ~~-~~y~g~~~~~~~l~~fi~~ 156 (285)
.. ....|..+.+ ++++.+.+
T Consensus 89 ~~l~~~~G~~~~~-~f~~~L~~ 109 (114)
T cd02958 89 EVLKVWSGNITPE-DLLSQLIE 109 (114)
T ss_pred cEeEEEcCCCCHH-HHHHHHHH
Confidence 55 4578888775 77776654
No 182
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.70 E-value=2e-07 Score=72.00 Aligned_cols=75 Identities=17% Similarity=0.410 Sum_probs=53.1
Q ss_pred HhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcC-------------hHHH-Hhc---CCcccCeEEEEe
Q psy159 176 EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQD-------------PQLA-KRY---SIKTFPALVYFR 238 (285)
Q Consensus 176 ~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~-------------~~~~-~~~---~v~~~Ptl~~~~ 238 (285)
..++..+|.|||+||++|++..|.+++++++++ ..+....++. .... ..+ ++.++|+.+++.
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 335667999999999999999999999999875 2333333321 2232 345 789999999995
Q ss_pred -CCeE-E-EEecCCcc
Q psy159 239 -NGNP-L-IFEGENKI 251 (285)
Q Consensus 239 -~g~~-~-~y~g~~~~ 251 (285)
+|+. + .+.|..+.
T Consensus 127 ~~G~~i~~~~~G~~s~ 142 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDE 142 (153)
T ss_pred CCCCEEEEEeecccCH
Confidence 4553 3 56787763
No 183
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.69 E-value=1.2e-07 Score=75.13 Aligned_cols=74 Identities=14% Similarity=0.393 Sum_probs=60.1
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--c-----------------------ChHHHHhcCCccc
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-----------------------DPQLAKRYSIKTF 231 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-----------------------~~~~~~~~~v~~~ 231 (285)
.+++++|.||++||++|+...+.+.++.+++.+.++.+..+ + +..+++.|++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 46789999999999999999999999999987544666666 1 2467899999999
Q ss_pred CeEEEEe-CCeEE-EEecCCc
Q psy159 232 PALVYFR-NGNPL-IFEGENK 250 (285)
Q Consensus 232 Ptl~~~~-~g~~~-~y~g~~~ 250 (285)
|+++++. +|+.+ .+.|..+
T Consensus 140 P~~~lid~~g~i~~~~~g~~~ 160 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMT 160 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCC
Confidence 9988885 67766 6678775
No 184
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.67 E-value=9.7e-08 Score=71.18 Aligned_cols=73 Identities=18% Similarity=0.408 Sum_probs=54.5
Q ss_pred HhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEE---------------------EE--cChHHHHhcCCcccC
Q psy159 176 EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMV---------------------KI--QDPQLAKRYSIKTFP 232 (285)
Q Consensus 176 ~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~---------------------~i--~~~~~~~~~~v~~~P 232 (285)
..+++++|.||++||++|+.+.|.+.++++++.- +.+. .+ .+..+++.|+|.++|
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 95 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPV--VSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTP 95 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhCCE--EEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCccc
Confidence 3468899999999999999999999988877431 1111 11 345799999999999
Q ss_pred eEEEEeCCeEE-EEecCCc
Q psy159 233 ALVYFRNGNPL-IFEGENK 250 (285)
Q Consensus 233 tl~~~~~g~~~-~y~g~~~ 250 (285)
+++++.+|+.. .+.|..+
T Consensus 96 ~~~vid~~gi~~~~~g~~~ 114 (123)
T cd03011 96 AIVIVDPGGIVFVTTGVTS 114 (123)
T ss_pred EEEEEcCCCeEEEEeccCC
Confidence 99999766532 5566664
No 185
>KOG0914|consensus
Probab=98.66 E-value=2.8e-08 Score=78.57 Aligned_cols=84 Identities=13% Similarity=0.328 Sum_probs=68.4
Q ss_pred ccccccc-cHHHHHHHHHh--CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCc----
Q psy159 160 EDRIELI-TRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIK---- 229 (285)
Q Consensus 160 ~~~v~~~-~~~~~~~~~~~--~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~---- 229 (285)
++.++.. +.+.+++.+.. ...|+|.|++-|.+.|....|.|.+|+.+|....++||++ ..++.+.+|+|.
T Consensus 123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~ 202 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPG 202 (265)
T ss_pred chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcc
Confidence 3444455 44455555543 5569999999999999999999999999999767999999 678899999984
Q ss_pred --ccCeEEEEeCCeEE
Q psy159 230 --TFPALVYFRNGNPL 243 (285)
Q Consensus 230 --~~Ptl~~~~~g~~~ 243 (285)
++||+++|++|+.+
T Consensus 203 srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 203 SRQLPTYILFQKGKEV 218 (265)
T ss_pred cccCCeEEEEccchhh
Confidence 68999999999755
No 186
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.65 E-value=1.1e-07 Score=65.70 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=48.2
Q ss_pred hHHHHHHhcCCcEEEEEeCCCChhHHHHHHHH---HhHHhhcCCCCcEEEEeC--ChhHHhhhCCCCCCeEEEEc
Q psy159 64 RMLDKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA--DPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 64 ~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~---~~~a~~~~~~~v~~~~~~--~~~l~~~~~i~~~Ptl~~~~ 133 (285)
+.+....+++++++|.|+++||+.|+.+...+ .++.+.+. .++..+.+| ..+--.++...++|+++++.
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 34555667889999999999999999999877 45555443 247777776 22211132227799999985
No 187
>smart00594 UAS UAS domain.
Probab=98.64 E-value=3.7e-07 Score=68.02 Aligned_cols=87 Identities=15% Similarity=0.291 Sum_probs=64.3
Q ss_pred HHHHHhcCCcEEEEEeCCCChhHHHHHHHH---HhHHhhcCCCCcEEEEeC-----ChhHHhhhCCCCCCeEEEEcc-c-
Q psy159 66 LDKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFRH-R- 135 (285)
Q Consensus 66 f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~---~~~a~~~~~~~v~~~~~~-----~~~l~~~~~i~~~Ptl~~~~~-g- 135 (285)
.+...++++.++|+|+++||..|+.+.... .++.+.++. ++.+..+| ...++.++++.++|++.++.. |
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g 98 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTG 98 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCC
Confidence 344446678999999999999999998754 556666644 46665555 457899999999999999964 3
Q ss_pred c-----ceeecCCCchhHHHHHHH
Q psy159 136 F-----PSIYRGDLSEEEEVLQWL 154 (285)
Q Consensus 136 ~-----~~~y~g~~~~~~~l~~fi 154 (285)
. .....|..+.+ ++++++
T Consensus 99 ~~~~~~~~~~~G~~~~~-~l~~~l 121 (122)
T smart00594 99 QRVIEWVGVVEGEISPE-ELMTFL 121 (122)
T ss_pred ceeEEEeccccCCCCHH-HHHHhh
Confidence 1 13577888875 787765
No 188
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.63 E-value=4.2e-06 Score=77.86 Aligned_cols=170 Identities=15% Similarity=0.203 Sum_probs=117.8
Q ss_pred CcE-EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEccccc--eeecCCCchhHHH
Q psy159 74 EFV-TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFP--SIYRGDLSEEEEV 150 (285)
Q Consensus 74 ~~~-lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~--~~y~g~~~~~~~l 150 (285)
.++ ++.|.. .|..|.++...+++++..-++ +.+..-+ ++....|++.+..+|.. +.|.|-..-. ++
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~k--i~~~~~~-------~~~~~~p~~~~~~~~~~~~i~f~g~P~g~-Ef 87 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASLSDK--ISLTQNT-------ADTLRKPSFTILRDGADTGIRFAGIPGGH-EF 87 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHhCCC--eEEEEec-------CCcCCCCeEEEecCCcccceEEEecCCcH-HH
Confidence 444 455555 789999999988888876543 4432222 11245699999877653 8899977765 78
Q ss_pred HHHHhhhccc-cccccccHHHHHHHHHhCCe-EEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHh
Q psy159 151 LQWLITQKTE-DRIELITRVMLETMVEETQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKR 225 (285)
Q Consensus 151 ~~fi~~~~~~-~~v~~~~~~~~~~~~~~~~~-~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~ 225 (285)
..|+....+- ..-..++++..+.+.+=+++ -+..|.++.|++|..+...+.+++.... ++..-.+ ..++++++
T Consensus 88 ~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~~ 165 (515)
T TIGR03140 88 TSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVEA 165 (515)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHHh
Confidence 8888876542 22345666666554432444 5778999999999999999999988755 4655555 78999999
Q ss_pred cCCcccCeEEEEeCCeEEEEecCCccchhHHHHHhh
Q psy159 226 YSIKTFPALVYFRNGNPLIFEGENKILKGTYIGTYI 261 (285)
Q Consensus 226 ~~v~~~Ptl~~~~~g~~~~y~g~~~~e~~~~~~~~~ 261 (285)
|++.++|++++ +|+ ..+.|..+.+ .++..+.
T Consensus 166 ~~v~~VP~~~i--~~~-~~~~g~~~~~--~~~~~l~ 196 (515)
T TIGR03140 166 LGIQGVPAVFL--NGE-EFHNGRMDLA--ELLEKLE 196 (515)
T ss_pred cCCcccCEEEE--CCc-EEEecCCCHH--HHHHHHh
Confidence 99999999976 555 4577776533 2344444
No 189
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.63 E-value=3.3e-07 Score=68.69 Aligned_cols=71 Identities=20% Similarity=0.350 Sum_probs=54.1
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE------------------------------cChHHHHhc
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------------QDPQLAKRY 226 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------------~~~~~~~~~ 226 (285)
.+++++|.||+.||+.|+...|.++++.++++..++.+..+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 46899999999999999999999999999998545555543 123456678
Q ss_pred CCcccCeEEEE-eCCeEE-EEec
Q psy159 227 SIKTFPALVYF-RNGNPL-IFEG 247 (285)
Q Consensus 227 ~v~~~Ptl~~~-~~g~~~-~y~g 247 (285)
++.++|+.+++ ++|+.+ .+.|
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEec
Confidence 88889999888 467644 4434
No 190
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.62 E-value=2.3e-07 Score=69.58 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=51.5
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC------------------------------ChhHHhhh
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------------------------DPRYARKW 121 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~------------------------------~~~l~~~~ 121 (285)
.+++++|.||++||+.|.+..|.+.++.++++..++.++.++ ...+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 568899999999999999999999999999965555554331 23466778
Q ss_pred CCCCCCeEEEEcc-ccc
Q psy159 122 GVTKLPAVVYFRH-RFP 137 (285)
Q Consensus 122 ~i~~~Ptl~~~~~-g~~ 137 (285)
++.++|+.+++.+ |+.
T Consensus 102 ~v~~~P~~~vid~~G~v 118 (126)
T cd03012 102 GNQYWPALYLIDPTGNV 118 (126)
T ss_pred CCCcCCeEEEECCCCcE
Confidence 8888898888864 544
No 191
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.62 E-value=4.1e-07 Score=72.96 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=52.4
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---c-----------------------ChHHHHhcCCcc
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---Q-----------------------DPQLAKRYSIKT 230 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~-----------------------~~~~~~~~~v~~ 230 (285)
.+++++|.||++||++|+...|.+.++.++ ++.+..+ + ...+...|++.+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 578899999999999999999999998653 2444444 1 112445789999
Q ss_pred cCeEEEE-eCCeEE-EEecCCcc
Q psy159 231 FPALVYF-RNGNPL-IFEGENKI 251 (285)
Q Consensus 231 ~Ptl~~~-~~g~~~-~y~g~~~~ 251 (285)
+|+.+++ ++|+.. .+.|..+.
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~ 165 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNP 165 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCH
Confidence 9976666 588755 66787753
No 192
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.60 E-value=3.7e-07 Score=72.42 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=52.4
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--------------------------cChHHHHhcCCcc
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--------------------------QDPQLAKRYSIKT 230 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------------------------~~~~~~~~~~v~~ 230 (285)
.+++++|+||++||++|+.+.|.++++.++ ++.+..+ ....+.+.|++.+
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 468999999999999999999999988764 1222222 2345677899999
Q ss_pred cCeEEEE-eCCeEE-EEecCCcc
Q psy159 231 FPALVYF-RNGNPL-IFEGENKI 251 (285)
Q Consensus 231 ~Ptl~~~-~~g~~~-~y~g~~~~ 251 (285)
+|+.+++ ++|+.+ .+.|..+.
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~ 160 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNN 160 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCH
Confidence 9976666 688755 66787653
No 193
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.60 E-value=4.3e-07 Score=73.11 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=57.6
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---------------------ChhHHhhhCCCCCCeEE
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---------------------DPRYARKWGVTKLPAVV 130 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---------------------~~~l~~~~~i~~~Ptl~ 130 (285)
.+++++|.||++||+.|++..|.+.++.+.. +.++.++..+ ..++++.|++.+.|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 5678999999999999999999999887654 2334444311 34677889999999988
Q ss_pred EEccccceeecCCCchhHHHHHHHh
Q psy159 131 YFRHRFPSIYRGDLSEEEEVLQWLI 155 (285)
Q Consensus 131 ~~~~g~~~~y~g~~~~~~~l~~fi~ 155 (285)
++.+...+.+.|.....+.+.+.++
T Consensus 152 lID~~G~I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 152 LLDQDGKIRAKGLTNTREHLESLLE 176 (189)
T ss_pred EECCCCeEEEccCCCCHHHHHHHHH
Confidence 8775445555665433324444443
No 194
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.60 E-value=1.3e-07 Score=85.78 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=71.9
Q ss_pred eecChh-HHHHHHhcCC--cEEEEEeCCCChhHHHHHHHH-HhHHhhcCCCCcEEEEeC-------ChhHHhhhCCCCCC
Q psy159 59 EEVNRR-MLDKLLEENE--FVTVFFYETDHKDSVKVLERL-EKIDGETDNMDITFVKMA-------DPRYARKWGVTKLP 127 (285)
Q Consensus 59 ~~l~~~-~f~~~~~~~~--~~lv~Fya~~c~~C~~~~~~~-~~~a~~~~~~~v~~~~~~-------~~~l~~~~~i~~~P 127 (285)
..++.. .+++.+.+++ +++++|||+||-.||.+++.. .+.....+-.++...+.| +.++-++||+-+.|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 444444 8888887766 999999999999999998854 333333333457777776 45677899999999
Q ss_pred eEEEEcc-ccc-eeecCCCchhHHHHHHHhhh
Q psy159 128 AVVYFRH-RFP-SIYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 128 tl~~~~~-g~~-~~y~g~~~~~~~l~~fi~~~ 157 (285)
++++|.. |.. ....|..+.+ .+.+++++.
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~-~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTAD-AFLEHLERA 567 (569)
T ss_pred EEEEECCCCCcCcCCcceecHH-HHHHHHHHh
Confidence 9999984 443 4467777764 788887654
No 195
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.56 E-value=5.8e-07 Score=70.88 Aligned_cols=80 Identities=8% Similarity=0.079 Sum_probs=58.3
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC--------------ChhHHhhhCC--CCCCeEEEEcc-ccce-
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------------DPRYARKWGV--TKLPAVVYFRH-RFPS- 138 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~--------------~~~l~~~~~i--~~~Ptl~~~~~-g~~~- 138 (285)
+|.||++||++|++..|.+.+++++++ ..+..+.+| ...+.+.|++ .++|+.+++.. |+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 788999999999999999999999874 223223333 1235678885 69999999964 6552
Q ss_pred -eecCCCchhHHHHHHHhhhc
Q psy159 139 -IYRGDLSEEEEVLQWLITQK 158 (285)
Q Consensus 139 -~y~g~~~~~~~l~~fi~~~~ 158 (285)
.+.|..+.. ++.+.+....
T Consensus 152 ~~~~G~~~~~-~L~~~I~~ll 171 (181)
T PRK13728 152 PLLQGATDAA-GFMARMDTVL 171 (181)
T ss_pred EEEECCCCHH-HHHHHHHHHH
Confidence 588988875 6766665544
No 196
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.54 E-value=4.4e-07 Score=90.57 Aligned_cols=74 Identities=19% Similarity=0.392 Sum_probs=59.9
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE------------------------------cChHHHHhc
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------------QDPQLAKRY 226 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------------~~~~~~~~~ 226 (285)
.+++++|.|||+||++|+...|.++++.+++++.++.+..+ ....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 37899999999999999999999999999998634555443 123467789
Q ss_pred CCcccCeEEEE-eCCeEE-EEecCCc
Q psy159 227 SIKTFPALVYF-RNGNPL-IFEGENK 250 (285)
Q Consensus 227 ~v~~~Ptl~~~-~~g~~~-~y~g~~~ 250 (285)
+|.++|+++++ ++|+.+ ++.|...
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~ 524 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGH 524 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccC
Confidence 99999999999 689876 6777654
No 197
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.54 E-value=4e-07 Score=67.80 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=46.1
Q ss_pred hHHHHHHhcCCcEEEEEeCCCChhHHHHHHHH---HhHHhhcCCCCcEEEEeC----ChhHHhhhCCCCCCeEEEEcc
Q psy159 64 RMLDKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRH 134 (285)
Q Consensus 64 ~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~---~~~a~~~~~~~v~~~~~~----~~~l~~~~~i~~~Ptl~~~~~ 134 (285)
+.++...+++++++|.|+++||++|+.+.... .++.+.++. ++..+.++ +.... ..+ .++||++++..
T Consensus 14 eal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~ 88 (130)
T cd02960 14 EGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDP 88 (130)
T ss_pred HHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC-ccC-cccCeEEEECC
Confidence 44555567789999999999999999999865 445555532 35544444 11121 234 68999999965
No 198
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.51 E-value=6.2e-07 Score=61.85 Aligned_cols=68 Identities=16% Similarity=0.347 Sum_probs=45.6
Q ss_pred HHHHHHHhCCeEEEEEECCCChhhHHHHHHH---HHHHhhcCcCCeEEEEE--cChHHHHhcCCcccCeEEEEe
Q psy159 170 MLETMVEETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPALVYFR 238 (285)
Q Consensus 170 ~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i--~~~~~~~~~~v~~~Ptl~~~~ 238 (285)
.+....+++++++|+|+++||+.|+.+...+ .++.+.+.. ++....+ +..+-...+...++|+++++.
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 3455667799999999999999999998776 344443343 5666666 222211122226799999975
No 199
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.50 E-value=1.6e-06 Score=63.75 Aligned_cols=81 Identities=12% Similarity=0.229 Sum_probs=57.9
Q ss_pred HHHHHHhCCeEEEEEECCCChhhHHHHHH-HH--HHHhhcCcCCeEEEEE-----cChHHHHhcCCcccCeEEEEe--CC
Q psy159 171 LETMVEETQYLAVYFYKLNCNICDQILEG-LE--KVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALVYFR--NG 240 (285)
Q Consensus 171 ~~~~~~~~~~~~v~F~a~~c~~c~~~~~~-~~--~la~~~~~~~i~~~~i-----~~~~~~~~~~v~~~Ptl~~~~--~g 240 (285)
++...+++++++|+|+++||..|+.+... |. ++.+.++. +..+..+ +...++..|++.++|+++++. +|
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g 88 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTG 88 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccC
Confidence 34445568999999999999999998653 33 44444543 3334444 345789999999999999995 57
Q ss_pred eEE-EEecCCccc
Q psy159 241 NPL-IFEGENKIL 252 (285)
Q Consensus 241 ~~~-~y~g~~~~e 252 (285)
+.+ +..|..+.+
T Consensus 89 ~~l~~~~G~~~~~ 101 (114)
T cd02958 89 EVLKVWSGNITPE 101 (114)
T ss_pred cEeEEEcCCCCHH
Confidence 765 777887643
No 200
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.50 E-value=1.9e-06 Score=80.80 Aligned_cols=143 Identities=15% Similarity=0.261 Sum_probs=101.2
Q ss_pred cchHHHHHcCCCCCCeEEEee-cCc--cccccCCCcchHHHHHHhhcCCCcccccceeecChhHHHHHHhcCCcEEE-EE
Q psy159 5 SDTEAAAKYNIINLPSLVYFR-KQV--PLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTV-FF 80 (285)
Q Consensus 5 ~~~~~~~~~~i~~~Ptl~~~~-~~~--~~~y~g~~~~~~~i~~fi~~~~~p~~~~~v~~l~~~~f~~~~~~~~~~lv-~F 80 (285)
++++++.+|+|+..|++.+.+ +|. -+.|.|--.-. ++..|+..-..- +..-..++++..+.+-.=++++-| .|
T Consensus 407 ~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~-Ef~s~i~~i~~~--~~~~~~l~~~~~~~i~~~~~~~~i~v~ 483 (555)
T TIGR03143 407 EEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGH-ELNSFILALYNA--AGPGQPLGEELLEKIKKITKPVNIKIG 483 (555)
T ss_pred cchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccH-hHHHHHHHHHHh--cCCCCCCCHHHHHHHHhcCCCeEEEEE
Confidence 356788999999999999985 443 36688766656 677776542110 011234677777776544556544 56
Q ss_pred eCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-ChhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHHHHH
Q psy159 81 YETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 154 (285)
Q Consensus 81 ya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~~fi 154 (285)
.+++|++|.+....+.+++....+....++.+. .++++.+|+|.+.|++++ ||+ ..+.|..+.+ ++++++
T Consensus 484 ~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~-~~~~G~~~~~-~~~~~~ 554 (555)
T TIGR03143 484 VSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ-QVYFGKKTIE-EMLELI 554 (555)
T ss_pred ECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCE-EEEeeCCCHH-HHHHhh
Confidence 899999999999999999887654434455444 789999999999999876 454 4567877654 888876
No 201
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.48 E-value=8.1e-07 Score=66.19 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=45.5
Q ss_pred HHHHHHhCCeEEEEEECCCChhhHHHHHHHH---HHHhhcCcCCeEEEEE--c--ChHHHHhcCCcccCeEEEE-eCCeE
Q psy159 171 LETMVEETQYLAVYFYKLNCNICDQILEGLE---KVDDECDIYGIHMVKI--Q--DPQLAKRYSIKTFPALVYF-RNGNP 242 (285)
Q Consensus 171 ~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~---~la~~~~~~~i~~~~i--~--~~~~~~~~~v~~~Ptl~~~-~~g~~ 242 (285)
++...+++++++|+|+++||++|+++...+- ++.+.... +...+.+ + ..... ..+ .++|+++|+ .+|+.
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~v 92 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTV 92 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCC
Confidence 3344556999999999999999999987632 33333322 2333333 1 11111 233 579999999 46654
Q ss_pred E-EEecCC
Q psy159 243 L-IFEGEN 249 (285)
Q Consensus 243 ~-~y~g~~ 249 (285)
+ ...|..
T Consensus 93 i~~i~Gy~ 100 (130)
T cd02960 93 RADITGRY 100 (130)
T ss_pred cccccccc
Confidence 3 444443
No 202
>KOG0913|consensus
Probab=98.47 E-value=4.7e-08 Score=78.32 Aligned_cols=114 Identities=15% Similarity=0.294 Sum_probs=89.4
Q ss_pred ccccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEe
Q psy159 162 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 238 (285)
Q Consensus 162 ~v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~ 238 (285)
.+..++.++..+++. ..+++.|++|||+.|+...+.|+..|.--.+..+.++.+ .++.+.-+|-++..|||.-.+
T Consensus 25 ~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvk 102 (248)
T KOG0913|consen 25 KLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVK 102 (248)
T ss_pred eeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEee
Confidence 455677777766664 458899999999999999999999987766656777777 789999999999999999999
Q ss_pred CCeEEEEecCCccchhHHHHHhhhcCCCCCCCCCCCCCCCCc
Q psy159 239 NGNPLIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGA 280 (285)
Q Consensus 239 ~g~~~~y~g~~~~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 280 (285)
+|..-+|.|.++. +.+++++.. .+...++-+...+||..
T Consensus 103 DGeFrrysgaRdk--~dfisf~~~-r~w~~i~p~p~w~~p~S 141 (248)
T KOG0913|consen 103 DGEFRRYSGARDK--NDFISFEEH-REWQSIDPVPEWEKPDS 141 (248)
T ss_pred ccccccccCcccc--hhHHHHHHh-hhhhccCCcchhcCCCc
Confidence 9998899999974 334655543 45556666777777753
No 203
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.46 E-value=7.4e-07 Score=68.55 Aligned_cols=66 Identities=20% Similarity=0.236 Sum_probs=51.8
Q ss_pred cCCcEEEEEeCC-CChhHHHHHHHHHhHHhhcCCCCcEEEE--eC----------------------ChhHHhhhCCC--
Q psy159 72 ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFVK--MA----------------------DPRYARKWGVT-- 124 (285)
Q Consensus 72 ~~~~~lv~Fya~-~c~~C~~~~~~~~~~a~~~~~~~v~~~~--~~----------------------~~~l~~~~~i~-- 124 (285)
.+++++|.||++ ||++|....|.+.++++.++..++.++. .+ ...+.+++++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 568899999999 9999999999999998887444444442 11 45688899988
Q ss_pred -------CCCeEEEEcc-ccc
Q psy159 125 -------KLPAVVYFRH-RFP 137 (285)
Q Consensus 125 -------~~Ptl~~~~~-g~~ 137 (285)
++|+++++.. |+.
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V 127 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKV 127 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBE
T ss_pred cccccCCeecEEEEEECCCEE
Confidence 9999888765 554
No 204
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.44 E-value=1.8e-06 Score=66.37 Aligned_cols=74 Identities=20% Similarity=0.396 Sum_probs=57.5
Q ss_pred hCCeEEEEEECC-CChhhHHHHHHHHHHHhhcCcCCeEEEEE------------------------cChHHHHhcCCc--
Q psy159 177 ETQYLAVYFYKL-NCNICDQILEGLEKVDDECDIYGIHMVKI------------------------QDPQLAKRYSIK-- 229 (285)
Q Consensus 177 ~~~~~~v~F~a~-~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------~~~~~~~~~~v~-- 229 (285)
.+++++|.||+. ||++|+...|.+.++.+.++..++.+..+ ....+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 468899999999 99999999999999988877545666555 235688899988
Q ss_pred -------ccCeEEEE-eCCeEE-EEecCCc
Q psy159 230 -------TFPALVYF-RNGNPL-IFEGENK 250 (285)
Q Consensus 230 -------~~Ptl~~~-~~g~~~-~y~g~~~ 250 (285)
++|+++++ ++|+.+ .+.|...
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99988777 577655 4455554
No 205
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.37 E-value=6.5e-06 Score=58.55 Aligned_cols=89 Identities=24% Similarity=0.459 Sum_probs=72.4
Q ss_pred ChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEcc--cccee
Q psy159 62 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRH--RFPSI 139 (285)
Q Consensus 62 ~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~~--g~~~~ 139 (285)
+.+.++.++...+.++|.|+.++|+ .....|.++|+.++.. +.|+.+.+.++++++++.. |++.+|++ ..+..
T Consensus 6 s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~-~~F~~~~~~~~~~~~~~~~-~~i~l~~~~~~~~~~ 80 (97)
T cd02981 6 SKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDD-YGFGHTSDKEVAKKLKVKP-GSVVLFKPFEEEPVE 80 (97)
T ss_pred CHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccC-CeEEEEChHHHHHHcCCCC-CceEEeCCcccCCcc
Confidence 4556777788889999999999987 4778999999988653 8999999999999988754 88999986 34477
Q ss_pred ecCCCchhHHHHHHHhh
Q psy159 140 YRGDLSEEEEVLQWLIT 156 (285)
Q Consensus 140 y~g~~~~~~~l~~fi~~ 156 (285)
|.|..+.+ +|.+|+..
T Consensus 81 y~g~~~~~-~l~~fi~~ 96 (97)
T cd02981 81 YDGEFTEE-SLVEFIKD 96 (97)
T ss_pred CCCCCCHH-HHHHHHHh
Confidence 99988764 89999864
No 206
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.36 E-value=4.1e-06 Score=67.39 Aligned_cols=71 Identities=13% Similarity=0.329 Sum_probs=52.5
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---------------------cChHHHHhcCCcccCeEE
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---------------------QDPQLAKRYSIKTFPALV 235 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---------------------~~~~~~~~~~v~~~Ptl~ 235 (285)
.+++++|+||++||++|+...|.+.++.++.. .++.+... ...++.+.|++.+.|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~-~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE-TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 46789999999999999999999999877643 23433331 234677889999999887
Q ss_pred EEe-CCeEEEEecCC
Q psy159 236 YFR-NGNPLIFEGEN 249 (285)
Q Consensus 236 ~~~-~g~~~~y~g~~ 249 (285)
++. +|+ +.+.|..
T Consensus 152 lID~~G~-I~~~g~~ 165 (189)
T TIGR02661 152 LLDQDGK-IRAKGLT 165 (189)
T ss_pred EECCCCe-EEEccCC
Confidence 774 665 4566654
No 207
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.34 E-value=3.3e-06 Score=66.61 Aligned_cols=66 Identities=14% Similarity=0.264 Sum_probs=50.4
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--c--------------ChHHHHhcCC--cccCeEEEE-eCCeE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q--------------DPQLAKRYSI--KTFPALVYF-RNGNP 242 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~--------------~~~~~~~~~v--~~~Ptl~~~-~~g~~ 242 (285)
+|.||++||++|++..|.++++++++. +.+.-+ + ...+...|++ .++|+.+++ ++|+.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g---~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i 149 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG---FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLE 149 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC---CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcE
Confidence 678999999999999999999999975 333333 1 1235668885 699999999 67876
Q ss_pred E--EEecCCc
Q psy159 243 L--IFEGENK 250 (285)
Q Consensus 243 ~--~y~g~~~ 250 (285)
+ .+.|..+
T Consensus 150 ~~~~~~G~~~ 159 (181)
T PRK13728 150 ALPLLQGATD 159 (181)
T ss_pred EEEEEECCCC
Confidence 4 5788876
No 208
>smart00594 UAS UAS domain.
Probab=98.34 E-value=6.6e-06 Score=61.27 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=53.8
Q ss_pred HHHHhCCeEEEEEECCCChhhHHHHHH-HH--HHHhhcCcCCeEEEEE-----cChHHHHhcCCcccCeEEEEe-CC-e-
Q psy159 173 TMVEETQYLAVYFYKLNCNICDQILEG-LE--KVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALVYFR-NG-N- 241 (285)
Q Consensus 173 ~~~~~~~~~~v~F~a~~c~~c~~~~~~-~~--~la~~~~~~~i~~~~i-----~~~~~~~~~~v~~~Ptl~~~~-~g-~- 241 (285)
...++.+.++|+|+++||..|+.+... |. ++.+.+.. +..+..+ +...++..|+++++|+++++. +| +
T Consensus 22 ~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~ 100 (122)
T smart00594 22 EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQR 100 (122)
T ss_pred HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCce
Confidence 344568899999999999999998754 22 33334443 3444333 556799999999999999994 44 2
Q ss_pred ---EE-EEecCCcc
Q psy159 242 ---PL-IFEGENKI 251 (285)
Q Consensus 242 ---~~-~y~g~~~~ 251 (285)
.+ ...|..+.
T Consensus 101 ~~~~~~~~~G~~~~ 114 (122)
T smart00594 101 VIEWVGVVEGEISP 114 (122)
T ss_pred eEEEeccccCCCCH
Confidence 12 66777763
No 209
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.32 E-value=6.5e-06 Score=55.82 Aligned_cols=74 Identities=18% Similarity=0.353 Sum_probs=54.2
Q ss_pred EEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHHHHHh
Q psy159 78 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLI 155 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~~fi~ 155 (285)
|..++++|++|..+...+++++..++ .++.+..+.+..-+.+|||.+.|++++ +|+ ..+.|...+.+++.++++
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~-~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEIEKYGVMSVPALVI--NGK-VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHHHHTT-SSSSEEEE--TTE-EEEESS--HHHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHHHHcCCCCCCEEEE--CCE-EEEEecCCCHHHHHHHhC
Confidence 34478889999999999999988884 556666666655559999999999955 554 678885444457888764
No 210
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.26 E-value=4.5e-06 Score=55.78 Aligned_cols=65 Identities=20% Similarity=0.158 Sum_probs=44.9
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---Ch----hHHhhhCCCCCCeEEEEccccceeecCCCchhHH
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DP----RYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEE 149 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~----~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~ 149 (285)
+..|+++||++|+++.+.+++. ++.+..+| ++ .+++++++.++|++.+. |+. ..|. +.+ .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g~-~~~-~ 68 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVGF-DPE-K 68 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--EeeC-CHH-H
Confidence 4689999999999999888763 24444433 22 35677999999999875 433 4553 333 6
Q ss_pred HHHHH
Q psy159 150 VLQWL 154 (285)
Q Consensus 150 l~~fi 154 (285)
|.+++
T Consensus 69 i~~~i 73 (74)
T TIGR02196 69 LDQLL 73 (74)
T ss_pred HHHHh
Confidence 77776
No 211
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.24 E-value=4.4e-06 Score=62.15 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=50.3
Q ss_pred cCCcEEEEEeCC-CChhHHHHHHHHHhHHhhcCCCCcEEEEe--C----------------------ChhHHhhhCCC--
Q psy159 72 ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFVKM--A----------------------DPRYARKWGVT-- 124 (285)
Q Consensus 72 ~~~~~lv~Fya~-~c~~C~~~~~~~~~~a~~~~~~~v~~~~~--~----------------------~~~l~~~~~i~-- 124 (285)
.+++++|.||+. ||++|....+.+.++.++++..++.++.+ | +..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 568999999999 99999999999999999886555555532 2 34556667766
Q ss_pred ----CCCeEEEEccccceee
Q psy159 125 ----KLPAVVYFRHRFPSIY 140 (285)
Q Consensus 125 ----~~Ptl~~~~~g~~~~y 140 (285)
..|+++++.++..+.|
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 6677777665444443
No 212
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.23 E-value=8.4e-06 Score=68.65 Aligned_cols=102 Identities=17% Similarity=0.348 Sum_probs=68.2
Q ss_pred cccccc-cHHHHHHHHHh---CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--cChHHHHhcCCcccCeE
Q psy159 161 DRIELI-TRVMLETMVEE---TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPAL 234 (285)
Q Consensus 161 ~~v~~~-~~~~~~~~~~~---~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~v~~~Ptl 234 (285)
+.+..+ +.+.|-+.+.. ...++|.||.+.+..|..+...|..||.+|. .++|.+| ..-.+..+|.+..+|||
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~~~~~~~~f~~~~LPtl 202 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP--EVKFVKIRASKCPASENFPDKNLPTL 202 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEECGCCTTTTS-TTC-SEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEEehhccCcccCCcccCCCEE
Confidence 344444 45677666543 3468999999999999999999999999998 5999999 22227789999999999
Q ss_pred EEEeCCeEE-EEec-----CCccchhHHHHHhhhcCC
Q psy159 235 VYFRNGNPL-IFEG-----ENKILKGTYIGTYISTKA 265 (285)
Q Consensus 235 ~~~~~g~~~-~y~g-----~~~~e~~~~~~~~~~~~~ 265 (285)
++|++|+.+ .+-| +...... -+.+++.+..
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~-dlE~~L~~~G 238 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTE-DLEAFLIEYG 238 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HH-HHHHHHHTTT
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHH-HHHHHHHHcC
Confidence 999999866 4443 1111222 2677765443
No 213
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.21 E-value=8.5e-06 Score=66.06 Aligned_cols=41 Identities=5% Similarity=0.187 Sum_probs=35.4
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEe
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 112 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~ 112 (285)
.+++++|.|||+||+.|.+..|.+.++.++++..++.++.+
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv 78 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAF 78 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEe
Confidence 46899999999999999999999999999996666666655
No 214
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.18 E-value=6e-06 Score=59.99 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=52.6
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC----ChhHHhhhC--CCCCCeEEEEccccc
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWG--VTKLPAVVYFRHRFP 137 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~----~~~l~~~~~--i~~~Ptl~~~~~g~~ 137 (285)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..++ .+.+...++ +..+|++.++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 67888999999999999999999999999854 24444333 578889999 999999998887755
No 215
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.18 E-value=2e-05 Score=62.28 Aligned_cols=71 Identities=18% Similarity=0.327 Sum_probs=53.7
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC--------------------------------ChhHHh
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------------------------------DPRYAR 119 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~--------------------------------~~~l~~ 119 (285)
.++++|+.||++||+.|....+.+.++.+++.+.++.++.+. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 567899999999999999999999999999864455554331 234567
Q ss_pred hhCCCCCCeEEEEccccceeecC
Q psy159 120 KWGVTKLPAVVYFRHRFPSIYRG 142 (285)
Q Consensus 120 ~~~i~~~Ptl~~~~~g~~~~y~g 142 (285)
.|++...|+++++.+...+.|.+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEee
Confidence 88999999999997544444443
No 216
>KOG0911|consensus
Probab=98.18 E-value=2.7e-05 Score=62.47 Aligned_cols=176 Identities=13% Similarity=0.209 Sum_probs=104.4
Q ss_pred ChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccce
Q psy159 62 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPS 138 (285)
Q Consensus 62 ~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~ 138 (285)
..+.| +.+..+..++.|+++||..|+.+...+..+++.. .++.+++++ .+.++..+.+...|.+.++..|...
T Consensus 8 ~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v 83 (227)
T KOG0911|consen 8 FQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKV 83 (227)
T ss_pred hHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhh
Confidence 34556 5556778899999999999999999999999988 457788776 6889999999999999999877653
Q ss_pred -eecCCCchhH-HHHHHHhhhcc-------cccccc-c--cHHHHHHHHHh---CCeEEEEE-E---CCCChhhHHHHHH
Q psy159 139 -IYRGDLSEEE-EVLQWLITQKT-------EDRIEL-I--TRVMLETMVEE---TQYLAVYF-Y---KLNCNICDQILEG 199 (285)
Q Consensus 139 -~y~g~~~~~~-~l~~fi~~~~~-------~~~v~~-~--~~~~~~~~~~~---~~~~~v~F-~---a~~c~~c~~~~~~ 199 (285)
+..|...... .....+..... ...+.. . +...++..+.. .+++.++. . .|.||-.+++..+
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~i 163 (227)
T KOG0911|consen 84 DRLSGADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGI 163 (227)
T ss_pred hhhhccCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHHHHHH
Confidence 3344332210 11122221111 011111 0 00012223222 33443332 2 3589988888888
Q ss_pred HHHHHhhcCcCCeEEEEE-cChHHHHhcCC-cccCeE-EEEeCCeEEEEecCC
Q psy159 200 LEKVDDECDIYGIHMVKI-QDPQLAKRYSI-KTFPAL-VYFRNGNPLIFEGEN 249 (285)
Q Consensus 200 ~~~la~~~~~~~i~~~~i-~~~~~~~~~~v-~~~Ptl-~~~~~g~~~~y~g~~ 249 (285)
++.+.- ++.+..| .++++.+..+. ..+||+ =+|-+|+ |.|+.
T Consensus 164 L~~~nV-----~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE---FiGGl 208 (227)
T KOG0911|consen 164 LQSHNV-----NYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE---FIGGL 208 (227)
T ss_pred HHHcCC-----CeeEEeccCCHHHHHHhhhhcCCCCccceeECCE---eccCc
Confidence 877642 3455666 66666444322 233442 1334674 55655
No 217
>KOG1672|consensus
Probab=98.17 E-value=8.6e-06 Score=63.63 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=69.9
Q ss_pred ccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCC
Q psy159 164 ELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNG 240 (285)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g 240 (285)
.+-+..+|=+..+.+.-+++.||-|....|+-|..-++.||+.+-+ .+|.++ ..|-++.+++|..+|++++|++|
T Consensus 70 ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvnae~~PFlv~kL~IkVLP~v~l~k~g 147 (211)
T KOG1672|consen 70 EVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNAEKAPFLVTKLNIKVLPTVALFKNG 147 (211)
T ss_pred EeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEecccCceeeeeeeeeEeeeEEEEEcC
Confidence 3445777777777778889999999999999999999999999874 789999 67889999999999999999999
Q ss_pred eEEEEe
Q psy159 241 NPLIFE 246 (285)
Q Consensus 241 ~~~~y~ 246 (285)
+.+.|-
T Consensus 148 ~~~D~i 153 (211)
T KOG1672|consen 148 KTVDYV 153 (211)
T ss_pred EEEEEE
Confidence 987554
No 218
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.16 E-value=4.6e-05 Score=55.33 Aligned_cols=99 Identities=15% Similarity=0.325 Sum_probs=68.4
Q ss_pred ceeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhh-c-CCCCcEEEEeC--------ChhHHhhhCC--C
Q psy159 57 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGE-T-DNMDITFVKMA--------DPRYARKWGV--T 124 (285)
Q Consensus 57 ~v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~-~-~~~~v~~~~~~--------~~~l~~~~~i--~ 124 (285)
....|++-+|++++..-+.+||.|=... ++- .-..+|.++|++ . ...++.++.+. +.+|+++|+| .
T Consensus 5 G~v~LD~~tFdKvi~kf~~~LVKFD~ay-PyG-eKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke 82 (126)
T PF07912_consen 5 GCVPLDELTFDKVIPKFKYVLVKFDVAY-PYG-EKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKE 82 (126)
T ss_dssp TSEEESTTHHHHHGGGSSEEEEEEEESS---C-HHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCC
T ss_pred ceeeccceehhheeccCceEEEEEeccC-CCc-chHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcc
Confidence 3678999999999999999999995332 111 134567777733 3 33345555442 7899999999 4
Q ss_pred CCCeEEEEccc--cceee--cCCCchhHHHHHHHhhhc
Q psy159 125 KLPAVVYFRHR--FPSIY--RGDLSEEEEVLQWLITQK 158 (285)
Q Consensus 125 ~~Ptl~~~~~g--~~~~y--~g~~~~~~~l~~fi~~~~ 158 (285)
.+|.+.+|..| .++.| .|+.+.+ +|..|+.++.
T Consensus 83 ~fPv~~LF~~~~~~pv~~p~~~~~t~~-~l~~fvk~~t 119 (126)
T PF07912_consen 83 DFPVIYLFVGDKEEPVRYPFDGDVTAD-NLQRFVKSNT 119 (126)
T ss_dssp C-SEEEEEESSTTSEEEE-TCS-S-HH-HHHHHHHHTS
T ss_pred cCCEEEEecCCCCCCccCCccCCccHH-HHHHHHHhCC
Confidence 58999999954 35778 8888886 9999998874
No 219
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.15 E-value=5.7e-06 Score=75.42 Aligned_cols=94 Identities=18% Similarity=0.352 Sum_probs=64.1
Q ss_pred ccccHH-HHHHHHHhCC--eEEEEEECCCChhhHHHHHH-HHH--HHhhcCcCCeEEEEE-------cChHHHHhcCCcc
Q psy159 164 ELITRV-MLETMVEETQ--YLAVYFYKLNCNICDQILEG-LEK--VDDECDIYGIHMVKI-------QDPQLAKRYSIKT 230 (285)
Q Consensus 164 ~~~~~~-~~~~~~~~~~--~~~v~F~a~~c~~c~~~~~~-~~~--la~~~~~~~i~~~~i-------~~~~~~~~~~v~~ 230 (285)
..++.. .+++.+.+++ +++++|||+||-.||.+.+. +.+ ...++. ++...+. ....+.++|++-+
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~--~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ--DVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC--CeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 344444 7888888866 99999999999999998765 322 333333 4555555 3455788999999
Q ss_pred cCeEEEEe-CCe-EEEEecCCccchhHHHHHhh
Q psy159 231 FPALVYFR-NGN-PLIFEGENKILKGTYIGTYI 261 (285)
Q Consensus 231 ~Ptl~~~~-~g~-~~~y~g~~~~e~~~~~~~~~ 261 (285)
.|++++|. +|+ +..-+|-++ .+..+.++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~--a~~~~~~l~ 565 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLT--ADAFLEHLE 565 (569)
T ss_pred CCEEEEECCCCCcCcCCcceec--HHHHHHHHH
Confidence 99999997 554 335667665 233455543
No 220
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.2e-05 Score=59.18 Aligned_cols=87 Identities=16% Similarity=0.405 Sum_probs=60.9
Q ss_pred HHHhCCeEEEEEECCCChhhHHHHHHHH---HHHhhcCcCCeEEEEE-------------------cChHHHHhcCCccc
Q psy159 174 MVEETQYLAVYFYKLNCNICDQILEGLE---KVDDECDIYGIHMVKI-------------------QDPQLAKRYSIKTF 231 (285)
Q Consensus 174 ~~~~~~~~~v~F~a~~c~~c~~~~~~~~---~la~~~~~~~i~~~~i-------------------~~~~~~~~~~v~~~ 231 (285)
+..+++-.+++|-++.|..|.++...+. ++.+-+++ ++.++.+ +..++++.|+|+++
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 3445788999999999999999987643 44444444 3334333 45689999999999
Q ss_pred CeEEEEe-CCeEE-EEecCCccchhHHHHHhh
Q psy159 232 PALVYFR-NGNPL-IFEGENKILKGTYIGTYI 261 (285)
Q Consensus 232 Ptl~~~~-~g~~~-~y~g~~~~e~~~~~~~~~ 261 (285)
|++++|. .|+.+ ..+|-+..++-..+..++
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 9999995 56766 557877655543344444
No 221
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.11 E-value=1.7e-05 Score=64.93 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=60.3
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC------------ChhHHhhhCCCCCCeEEEEcccc--c-
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------DPRYARKWGVTKLPAVVYFRHRF--P- 137 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~------------~~~l~~~~~i~~~Ptl~~~~~g~--~- 137 (285)
++.-|++||.+.|+.|+.+.|.+..+++.++ ..+..+.+| +..+++++||..+|++++...+. .
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG-FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWY 198 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEE
Confidence 4567899999999999999999999999984 346666666 47789999999999999998643 2
Q ss_pred eeecCCCchhHHHHH
Q psy159 138 SIYRGDLSEEEEVLQ 152 (285)
Q Consensus 138 ~~y~g~~~~~~~l~~ 152 (285)
..-.|-.+.. +|.+
T Consensus 199 pv~~G~~s~~-~L~~ 212 (215)
T PF13728_consen 199 PVSQGFMSLD-ELED 212 (215)
T ss_pred EEeeecCCHH-HHHH
Confidence 2345666553 5554
No 222
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.11 E-value=2.9e-05 Score=64.27 Aligned_cols=41 Identities=2% Similarity=0.046 Sum_probs=34.8
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEe
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 112 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~ 112 (285)
.+++++|.||++||+.|....|.++++.++++..++.++.+
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV 138 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAF 138 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46889999999999999999999999999996656665543
No 223
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.09 E-value=1.2e-05 Score=51.42 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=42.6
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHH---hhhCCCCCCeEEEEccc
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYA---RKWGVTKLPAVVYFRHR 135 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~---~~~~i~~~Ptl~~~~~g 135 (285)
++.|+++||++|.++.+.+.++ .....++.++.++ ..... ..+++.+.|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999988 2322346666554 23333 47899999999999876
No 224
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.07 E-value=1.5e-05 Score=57.76 Aligned_cols=65 Identities=23% Similarity=0.528 Sum_probs=54.8
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--c--ChHHHHhcC--CcccCeEEEEeCCeEE
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q--DPQLAKRYS--IKTFPALVYFRNGNPL 243 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~--~~~~~~~~~--v~~~Ptl~~~~~g~~~ 243 (285)
++++++.||++||++|+.+.|.+.++++++.. .+.+..+ . ...+...++ +..+|+++++.+|...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence 67888998999999999999999999999875 4566666 2 578888999 8999999988888654
No 225
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.06 E-value=6.6e-05 Score=53.28 Aligned_cols=88 Identities=19% Similarity=0.321 Sum_probs=68.0
Q ss_pred cHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcChHHHHhcCCcccCeEEEEeC--CeEEE
Q psy159 167 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN--GNPLI 244 (285)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~v~~~Ptl~~~~~--g~~~~ 244 (285)
+.+.++.++..++.++|-|+..+++ .....|.++|..+++ .+.|+.+.++.+.+++++. -|++++|+. ..+..
T Consensus 6 s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~~ 80 (97)
T cd02981 6 SKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTSDKEVAKKLKVK-PGSVVLFKPFEEEPVE 80 (97)
T ss_pred CHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEChHHHHHHcCCC-CCceEEeCCcccCCcc
Confidence 4556777788888899999998886 567889999999986 6999999888888888875 489999976 34568
Q ss_pred EecCCccchhHHHHHhh
Q psy159 245 FEGENKILKGTYIGTYI 261 (285)
Q Consensus 245 y~g~~~~e~~~~~~~~~ 261 (285)
|+|+++ ...+..|+.
T Consensus 81 y~g~~~--~~~l~~fi~ 95 (97)
T cd02981 81 YDGEFT--EESLVEFIK 95 (97)
T ss_pred CCCCCC--HHHHHHHHH
Confidence 999886 333455543
No 226
>KOG2501|consensus
Probab=98.06 E-value=4e-06 Score=63.82 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=52.0
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC----CCcEEEEeC--------------------------ChhHHhhh
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN----MDITFVKMA--------------------------DPRYARKW 121 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~----~~v~~~~~~--------------------------~~~l~~~~ 121 (285)
.++.+.++|.|.||++|+.|-|.+.++-.+++. ..|.|+.-| ..+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 458899999999999999999988777666622 347777533 25678899
Q ss_pred CCCCCCeEEEEcc-cccee
Q psy159 122 GVTKLPAVVYFRH-RFPSI 139 (285)
Q Consensus 122 ~i~~~Ptl~~~~~-g~~~~ 139 (285)
+|.+.|++.+.++ |..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 9999999999875 54433
No 227
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.06 E-value=6.2e-05 Score=59.50 Aligned_cols=70 Identities=26% Similarity=0.518 Sum_probs=54.3
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--c------------------------------ChHHHH
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q------------------------------DPQLAK 224 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~------------------------------~~~~~~ 224 (285)
.+++++++||++||+.|....+.+.++..++.+.++.|..+ + ...+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 56889999999999999999999999999987545666665 1 123466
Q ss_pred hcCCcccCeEEEEe-CCeEEEEec
Q psy159 225 RYSIKTFPALVYFR-NGNPLIFEG 247 (285)
Q Consensus 225 ~~~v~~~Ptl~~~~-~g~~~~y~g 247 (285)
.|++...|+++++. +|+ +.|.+
T Consensus 104 ~~~v~~~P~~~lid~~G~-v~~~~ 126 (171)
T cd02969 104 AYGAACTPDFFLFDPDGK-LVYRG 126 (171)
T ss_pred HcCCCcCCcEEEECCCCe-EEEee
Confidence 88899999999995 565 44543
No 228
>PLN02412 probable glutathione peroxidase
Probab=98.05 E-value=2.4e-05 Score=61.59 Aligned_cols=41 Identities=2% Similarity=0.029 Sum_probs=35.4
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEe
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 112 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~ 112 (285)
.+++++|.||++||+.|++..|.+.++.+++++.++.++.+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv 68 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAF 68 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEe
Confidence 45789999999999999999999999999997666776655
No 229
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.05 E-value=3.4e-05 Score=57.30 Aligned_cols=69 Identities=20% Similarity=0.484 Sum_probs=52.7
Q ss_pred hCCeEEEEEECC-CChhhHHHHHHHHHHHhhcCcCCeEEEEE------------------------cChHHHHhcCCc--
Q psy159 177 ETQYLAVYFYKL-NCNICDQILEGLEKVDDECDIYGIHMVKI------------------------QDPQLAKRYSIK-- 229 (285)
Q Consensus 177 ~~~~~~v~F~a~-~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------~~~~~~~~~~v~-- 229 (285)
.+++++|.||+. ||++|+...+.+.++..+++..++.+..+ ....+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 468999999999 99999999999999999888545777766 234567777777
Q ss_pred ----ccCeEEEEeCCeEEEE
Q psy159 230 ----TFPALVYFRNGNPLIF 245 (285)
Q Consensus 230 ----~~Ptl~~~~~g~~~~y 245 (285)
.+|+..++..+..++|
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 7787777754444444
No 230
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.04 E-value=3.8e-05 Score=51.86 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=38.4
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-ChhHHhh-----hCCCCCCeEEEEccccc
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARK-----WGVTKLPAVVYFRHRFP 137 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~~l~~~-----~~i~~~Ptl~~~~~g~~ 137 (285)
++.|+++||++|+++.+.+.+++-. ...+.++ +...... +++.+.|++ ++.+|..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~-----~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~ 62 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAA-----YEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSF 62 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCc-----eEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeE
Confidence 5789999999999999998876433 3344444 3333433 388999997 4666643
No 231
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.03 E-value=3.2e-05 Score=49.43 Aligned_cols=57 Identities=32% Similarity=0.630 Sum_probs=43.1
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHH---HhcCCcccCeEEEEeCC
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLA---KRYSIKTFPALVYFRNG 240 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~---~~~~v~~~Ptl~~~~~g 240 (285)
++.|++.||++|+.+.+.+.++. ... .++.+..+ ...... ..+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELA-LLN-KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHH-hhC-CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 46899999999999999999882 222 25777777 233332 37899999999999877
No 232
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.02 E-value=2.3e-05 Score=63.50 Aligned_cols=41 Identities=7% Similarity=0.311 Sum_probs=35.1
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
.+++++|.|||+||+.|+...|.++++.+++.+.++.+.-+
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv 78 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAF 78 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEe
Confidence 36799999999999999999999999999998645666555
No 233
>KOG2501|consensus
Probab=98.01 E-value=9.5e-06 Score=61.80 Aligned_cols=68 Identities=22% Similarity=0.422 Sum_probs=50.5
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCC--eEEEEE----------------------------cChHHHHhc
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYG--IHMVKI----------------------------QDPQLAKRY 226 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~--i~~~~i----------------------------~~~~~~~~~ 226 (285)
.++.+.++|-|.||++|+.+.|.+.++-++.+..+ +.+..+ ...+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 35899999999999999999988887766665421 333333 124577899
Q ss_pred CCcccCeEEEEe-CCeEEE
Q psy159 227 SIKTFPALVYFR-NGNPLI 244 (285)
Q Consensus 227 ~v~~~Ptl~~~~-~g~~~~ 244 (285)
+|.+.|++++.+ +|+.+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 999999999985 676553
No 234
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.00 E-value=2e-05 Score=59.06 Aligned_cols=92 Identities=15% Similarity=0.253 Sum_probs=51.3
Q ss_pred cChhHHHHHHh-cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-ChhHHhh---hCCCCCCeEEEEcc-
Q psy159 61 VNRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARK---WGVTKLPAVVYFRH- 134 (285)
Q Consensus 61 l~~~~f~~~~~-~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~~l~~~---~~i~~~Ptl~~~~~- 134 (285)
++++....+-. .++.-++.|..+|||.|....|.+.++|+...+..+.++..| +.++..+ .|....|+++++.+
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 45555554432 234456778899999999999999999998765557777666 5565554 46788999999965
Q ss_pred ccceeecCCCchhHHHHHHH
Q psy159 135 RFPSIYRGDLSEEEEVLQWL 154 (285)
Q Consensus 135 g~~~~y~g~~~~~~~l~~fi 154 (285)
|+...-=|++.. .+.+++
T Consensus 108 ~~~lg~wgerP~--~~~~~~ 125 (129)
T PF14595_consen 108 GKELGRWGERPK--EVQELV 125 (129)
T ss_dssp --EEEEEESS-H--HHH---
T ss_pred CCEeEEEcCCCH--HHhhcc
Confidence 555544556543 344444
No 235
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.98 E-value=7.7e-05 Score=50.51 Aligned_cols=63 Identities=24% Similarity=0.567 Sum_probs=46.3
Q ss_pred EEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcChHHHHhcCCcccCeEEEEeCCeEEEEecCCc
Q psy159 184 YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGENK 250 (285)
Q Consensus 184 ~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g~~~ 250 (285)
.+++++|++|..+...+++++..+. .++.+..+....-..+|||.+.|++++ ||+ +.|.|...
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~-~~~~G~~p 66 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEIEKYGVMSVPALVI--NGK-VVFVGRVP 66 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHHHHTT-SSSSEEEE--TTE-EEEESS--
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHHHHcCCCCCCEEEE--CCE-EEEEecCC
Confidence 3468889999999999999998885 356666664444449999999999966 675 67888544
No 236
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.97 E-value=8.4e-05 Score=54.56 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=46.7
Q ss_pred HHHHHHHH----hCCeEEEEEECC-------CChhhHHHHHHHHHHHhhcCcCCeEEEEE--------c--ChHHHH--h
Q psy159 169 VMLETMVE----ETQYLAVYFYKL-------NCNICDQILEGLEKVDDECDIYGIHMVKI--------Q--DPQLAK--R 225 (285)
Q Consensus 169 ~~~~~~~~----~~~~~~v~F~a~-------~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------~--~~~~~~--~ 225 (285)
++|.++++ ++++++|+|++. ||+.|....|.+++.-..... +..++.+ . +..... .
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCceEcce
Confidence 34555543 357888999854 999999999999988776543 5666655 2 223333 4
Q ss_pred cCCcccCeEEEEeCCe
Q psy159 226 YSIKTFPALVYFRNGN 241 (285)
Q Consensus 226 ~~v~~~Ptl~~~~~g~ 241 (285)
++|+++|||+-+..++
T Consensus 85 ~~l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 85 LKLKGIPTLIRWETGE 100 (119)
T ss_dssp C---SSSEEEECTSS-
T ss_pred eeeeecceEEEECCCC
Confidence 9999999999998774
No 237
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.96 E-value=9e-05 Score=54.12 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=74.9
Q ss_pred eeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhh---cCCCCcEEEEeC---ChhHHhhhCCCC--CCeE
Q psy159 58 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGE---TDNMDITFVKMA---DPRYARKWGVTK--LPAV 129 (285)
Q Consensus 58 v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~---~~~~~v~~~~~~---~~~l~~~~~i~~--~Ptl 129 (285)
|.++|.++.+.+..++.+..++|+.+ ..-..+...+.++|+. +++. +.|+.+| .....+.||+.. .|.+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgk-i~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGA-INFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCce-EEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 56789999999998888877777733 2347789999999999 8654 8888877 344888999997 8999
Q ss_pred EEEcccc--cee-ecCCCchhHHHHHHHhhhc
Q psy159 130 VYFRHRF--PSI-YRGDLSEEEEVLQWLITQK 158 (285)
Q Consensus 130 ~~~~~g~--~~~-y~g~~~~~~~l~~fi~~~~ 158 (285)
.+..... .+. +.+..+.+ +|.+|+.+..
T Consensus 78 ~i~~~~~~~Ky~~~~~~~t~~-~i~~Fv~~~~ 108 (111)
T cd03072 78 AIDSFRHMYLFPDFEDVYVPG-KLKQFVLDLH 108 (111)
T ss_pred EEEcchhcCcCCCCccccCHH-HHHHHHHHHh
Confidence 9987643 344 55777775 8999998754
No 238
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.95 E-value=4e-05 Score=51.77 Aligned_cols=55 Identities=25% Similarity=0.435 Sum_probs=38.5
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cChHHHHh-----cCCcccCeEEEEeCCeE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKR-----YSIKTFPALVYFRNGNP 242 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~-----~~v~~~Ptl~~~~~g~~ 242 (285)
++.|+++||++|+++.+.+.+++..+ ....+ +.+..... +++.++|++ ++.+|..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~-----~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~ 62 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAY-----EWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSF 62 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCce-----EEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeE
Confidence 56899999999999999998775443 23334 34333333 388899997 5677754
No 239
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.94 E-value=5.2e-05 Score=58.21 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=30.5
Q ss_pred CcEEEE-EeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC
Q psy159 74 EFVTVF-FYETDHKDSVKVLERLEKIDGETDNMDITFVKMA 113 (285)
Q Consensus 74 ~~~lv~-Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~ 113 (285)
++++|. |++.||+.|+...|.+.++.+++...++.++.+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~ 64 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVG 64 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEe
Confidence 445444 4699999999999999999999855556666544
No 240
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.94 E-value=5.5e-05 Score=60.07 Aligned_cols=80 Identities=9% Similarity=0.148 Sum_probs=54.6
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhh-cCC--CCc-EEEE-----------------------------eC-ChhH
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGE-TDN--MDI-TFVK-----------------------------MA-DPRY 117 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~-~~~--~~v-~~~~-----------------------------~~-~~~l 117 (285)
.++.++|.|||.||+.|+.-.|.+.+++++ +.. ... ..+. +| +..+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 488999999999999999999999998653 211 000 1111 22 3456
Q ss_pred HhhhCCCCCCeE-EEEcc-ccc-eeecCCCchhHHHHH
Q psy159 118 ARKWGVTKLPAV-VYFRH-RFP-SIYRGDLSEEEEVLQ 152 (285)
Q Consensus 118 ~~~~~i~~~Ptl-~~~~~-g~~-~~y~g~~~~~~~l~~ 152 (285)
+..|++.+.|+. +++.. |+. ..+.|..+.+ ++.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~e-e~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDS-DIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHH-HHHH
Confidence 678999999777 55554 655 5678887765 4444
No 241
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.92 E-value=6e-05 Score=63.54 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=59.1
Q ss_pred ccceeecC-hhHHHHHHhc---CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCCh--hHHhhhCCCCCCe
Q psy159 55 KNEIEEVN-RRMLDKLLEE---NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADP--RYARKWGVTKLPA 128 (285)
Q Consensus 55 ~~~v~~l~-~~~f~~~~~~---~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~--~l~~~~~i~~~Pt 128 (285)
-+.|.+++ .+.|-..+.. ...++|.||.+.+..|..+...|..||+.+.. +.|+++... .+...|.+...||
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~~~~~~~f~~~~LPt 201 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRASKCPASENFPDKNLPT 201 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECGCCTTTTS-TTC-SE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhccCcccCCcccCCCE
Confidence 34678885 5777777644 24588999999999999999999999999854 788877632 2678899999999
Q ss_pred EEEEccccc
Q psy159 129 VVYFRHRFP 137 (285)
Q Consensus 129 l~~~~~g~~ 137 (285)
|++|++|..
T Consensus 202 llvYk~G~l 210 (265)
T PF02114_consen 202 LLVYKNGDL 210 (265)
T ss_dssp EEEEETTEE
T ss_pred EEEEECCEE
Confidence 999999875
No 242
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.91 E-value=8.5e-05 Score=56.47 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=51.8
Q ss_pred CCcEEEEEe-CCCChhHHHHHHHHHhHHhhcCCCCcEEEEe--C----------------------ChhHHhhhCCCCC-
Q psy159 73 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM--A----------------------DPRYARKWGVTKL- 126 (285)
Q Consensus 73 ~~~~lv~Fy-a~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~--~----------------------~~~l~~~~~i~~~- 126 (285)
+++++|.|| +.||+.|....+.+.++.+.+...++.++.+ | ...+++.||+...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 678889998 5899999999999999988885444555432 2 3456777887777
Q ss_pred --------CeEEEEcc-ccc-eeecCCCc
Q psy159 127 --------PAVVYFRH-RFP-SIYRGDLS 145 (285)
Q Consensus 127 --------Ptl~~~~~-g~~-~~y~g~~~ 145 (285)
|+.+++.+ |+. ..+.|...
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~ 131 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKP 131 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCc
Confidence 77777764 554 34555543
No 243
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.91 E-value=0.00019 Score=58.84 Aligned_cols=72 Identities=26% Similarity=0.463 Sum_probs=56.0
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEc------------ChHHHHhcCCcccCeEEEEeCC--eEE
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ------------DPQLAKRYSIKTFPALVYFRNG--NPL 243 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~------------~~~~~~~~~v~~~Ptl~~~~~g--~~~ 243 (285)
++.-+++||.+.|++|+.+.|++..++.++.- .+..+.++ +..++++++|..+|+++++..+ +..
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~-~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGF-SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWY 198 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC-EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEE
Confidence 56678999999999999999999999999852 45555552 4778999999999999999643 333
Q ss_pred -EEecCCc
Q psy159 244 -IFEGENK 250 (285)
Q Consensus 244 -~y~g~~~ 250 (285)
.-.|..+
T Consensus 199 pv~~G~~s 206 (215)
T PF13728_consen 199 PVSQGFMS 206 (215)
T ss_pred EEeeecCC
Confidence 3346664
No 244
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.90 E-value=7.2e-05 Score=59.40 Aligned_cols=75 Identities=5% Similarity=0.042 Sum_probs=52.3
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhh-cCcCC---eEEEEE------------------------------cChHHH
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDE-CDIYG---IHMVKI------------------------------QDPQLA 223 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~-~~~~~---i~~~~i------------------------------~~~~~~ 223 (285)
+++.+|.|||.||++|+.-.|.+.+++.+ +.-.+ .....+ ....+.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~ 138 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK 138 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence 88999999999999999999999999654 22100 011111 233466
Q ss_pred HhcCCcccCeE-EEE-eCCeEE-EEecCCccc
Q psy159 224 KRYSIKTFPAL-VYF-RNGNPL-IFEGENKIL 252 (285)
Q Consensus 224 ~~~~v~~~Ptl-~~~-~~g~~~-~y~g~~~~e 252 (285)
..|++.+.|+. +++ ++|+.+ .+.|..+.+
T Consensus 139 ~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~e 170 (184)
T TIGR01626 139 NAWQLNSEDSAIIVLDKTGKVKFVKEGALSDS 170 (184)
T ss_pred HhcCCCCCCceEEEECCCCcEEEEEeCCCCHH
Confidence 78999999876 455 678765 777887644
No 245
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.89 E-value=7.3e-05 Score=57.85 Aligned_cols=93 Identities=17% Similarity=0.287 Sum_probs=56.3
Q ss_pred HHHHHhhhccccc-cccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHH-HHH--HHHhhcCcCCeEEEEE---cChHH
Q psy159 150 VLQWLITQKTEDR-IELITRVMLETMVEETQYLAVYFYKLNCNICDQILE-GLE--KVDDECDIYGIHMVKI---QDPQL 222 (285)
Q Consensus 150 l~~fi~~~~~~~~-v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~-~~~--~la~~~~~~~i~~~~i---~~~~~ 222 (285)
--.|+..+...++ ....+.+.++...+++++++|.++.+||+.|+.|.. .|+ ++|+.+.. +..-+++ +.+++
T Consensus 8 ~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~Pdi 86 (163)
T PF03190_consen 8 KSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREERPDI 86 (163)
T ss_dssp --HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT-HHH
T ss_pred CCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccCccH
Confidence 3456666665443 466777889889899999999999999999999875 333 44555543 2333344 56778
Q ss_pred HHhc--------CCcccCeEEEE-eCCeEE
Q psy159 223 AKRY--------SIKTFPALVYF-RNGNPL 243 (285)
Q Consensus 223 ~~~~--------~v~~~Ptl~~~-~~g~~~ 243 (285)
...| +..|+|+.+++ .+|+++
T Consensus 87 d~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 87 DKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp HHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 7777 78899987777 578776
No 246
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.86 E-value=7.9e-05 Score=55.88 Aligned_cols=71 Identities=20% Similarity=0.390 Sum_probs=44.0
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhc---CCcccCeEEEEe-CCeEEEEecCCc
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRY---SIKTFPALVYFR-NGNPLIFEGENK 250 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~---~v~~~Ptl~~~~-~g~~~~y~g~~~ 250 (285)
.+..++.|..+|||.|....|.+.++++... ++.+-.+ ++.++.++| +...+|+++++. +|+.+--=|++.
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wgerP 118 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGERP 118 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS-
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcCCC
Confidence 4456777889999999999999999999864 3555444 455555544 567899999995 566664446664
No 247
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00035 Score=52.86 Aligned_cols=86 Identities=15% Similarity=0.313 Sum_probs=57.2
Q ss_pred HhcCCcEEEEEeCCCChhHHHHHHHH---HhHHhhcCCCCcEEEE-------------------eCChhHHhhhCCCCCC
Q psy159 70 LEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVK-------------------MADPRYARKWGVTKLP 127 (285)
Q Consensus 70 ~~~~~~~lv~Fya~~c~~C~~~~~~~---~~~a~~~~~~~v~~~~-------------------~~~~~l~~~~~i~~~P 127 (285)
...++..++.|-++.|..|.++.... .++...+.+ ++.++. +...+||+.|++++.|
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 34567889999999999999998766 233333322 133322 2256899999999999
Q ss_pred eEEEEcc-cccee-ecCCCchhH--HHHHHHhh
Q psy159 128 AVVYFRH-RFPSI-YRGDLSEEE--EVLQWLIT 156 (285)
Q Consensus 128 tl~~~~~-g~~~~-y~g~~~~~~--~l~~fi~~ 156 (285)
++++|.. |+.+- ..|-...++ .++.|+.+
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999986 66643 455555441 34555544
No 248
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.82 E-value=8.1e-05 Score=57.58 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=56.0
Q ss_pred HHHhhcCCCcccccceeecChhHHHHHHhcCCcEEEEEeCCCChhHHHHHH-HH--HhHHhhcCCCCcEEEEeC---Chh
Q psy159 43 LTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLE-RL--EKIDGETDNMDITFVKMA---DPR 116 (285)
Q Consensus 43 ~~fi~~~~~p~~~~~v~~l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~-~~--~~~a~~~~~~~v~~~~~~---~~~ 116 (285)
..+++...... =.=...+++.|+..-+.+++++|.++.+||+.|+.|.. .| .++|+.+... +.-+++| .++
T Consensus 9 Spyl~~ha~~~--V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-FI~VkvDree~Pd 85 (163)
T PF03190_consen 9 SPYLRQHAHNP--VNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-FIPVKVDREERPD 85 (163)
T ss_dssp -HHHHTTTTSS--S--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH--EEEEEETTT-HH
T ss_pred CHHHHHhccCC--CCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-EEEEEeccccCcc
Confidence 34555554322 01234567889998889999999999999999999986 44 5677776432 6666676 577
Q ss_pred HHhhh--------CCCCCCeEEEEcc-ccc
Q psy159 117 YARKW--------GVTKLPAVVYFRH-RFP 137 (285)
Q Consensus 117 l~~~~--------~i~~~Ptl~~~~~-g~~ 137 (285)
+.+.| |.-|+|+.++..+ |++
T Consensus 86 id~~y~~~~~~~~~~gGwPl~vfltPdg~p 115 (163)
T PF03190_consen 86 IDKIYMNAVQAMSGSGGWPLTVFLTPDGKP 115 (163)
T ss_dssp HHHHHHHHHHHHHS---SSEEEEE-TTS-E
T ss_pred HHHHHHHHHHHhcCCCCCCceEEECCCCCe
Confidence 77776 7889999999876 655
No 249
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.81 E-value=5.6e-05 Score=50.35 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=39.3
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cCh----HHHHhcCCcccCeEEEEeCCeEEEEec
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDP----QLAKRYSIKTFPALVYFRNGNPLIFEG 247 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~----~~~~~~~v~~~Ptl~~~~~g~~~~y~g 247 (285)
+..|+++||++|+++.+.+++. ++.+..+ .++ .+.+.+++.++|++++. |+. ..|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g 63 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVG 63 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--Eee
Confidence 4678999999999999888764 2444444 232 35667999999999884 653 555
No 250
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.78 E-value=0.00011 Score=50.48 Aligned_cols=56 Identities=25% Similarity=0.370 Sum_probs=40.6
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cCh-----HHHHhcCCcccCeEEEEeCCeE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDP-----QLAKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~-----~~~~~~~v~~~Ptl~~~~~g~~ 242 (285)
++.|+++||++|+++.+.++++... + ...+..+ .+. .+.+.+++.++|++. -+|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~--~-~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK--P-AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC--C-CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEE
Confidence 4679999999999999999998722 1 2556666 122 266667999999984 46753
No 251
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.78 E-value=0.00015 Score=60.58 Aligned_cols=79 Identities=20% Similarity=0.290 Sum_probs=58.8
Q ss_pred CcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC------------ChhHHhhhCCCCCCeEEEEcccc--ce-
Q psy159 74 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------DPRYARKWGVTKLPAVVYFRHRF--PS- 138 (285)
Q Consensus 74 ~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~------------~~~l~~~~~i~~~Ptl~~~~~g~--~~- 138 (285)
+.-|++||.+.|++|.++.|.+..++++++- .+..+.+| +..+++++||..+|++++..... ..
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~ygi-~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYGI-SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhCC-eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEE
Confidence 5678999999999999999999999999852 35556666 24588899999999999987642 22
Q ss_pred eecCCCchhHHHHHHH
Q psy159 139 IYRGDLSEEEEVLQWL 154 (285)
Q Consensus 139 ~y~g~~~~~~~l~~fi 154 (285)
.-.|..+.+ +|.+=+
T Consensus 230 v~~G~iS~d-eL~~Ri 244 (256)
T TIGR02739 230 LAYGFISQD-ELKERI 244 (256)
T ss_pred EeeccCCHH-HHHHHH
Confidence 234555553 565444
No 252
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.76 E-value=4.5e-05 Score=59.07 Aligned_cols=41 Identities=7% Similarity=0.100 Sum_probs=34.5
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA 113 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~ 113 (285)
.+++++|.|||+||+ |....|.++++.+++++.++.++.++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~ 61 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFP 61 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEec
Confidence 368899999999999 99999999999999966566666543
No 253
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.75 E-value=0.0002 Score=57.09 Aligned_cols=121 Identities=15% Similarity=0.205 Sum_probs=71.2
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC----------C----hhHHh-hhCCCCCCeEEEEcccc
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----------D----PRYAR-KWGVTKLPAVVYFRHRF 136 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~----------~----~~l~~-~~~i~~~Ptl~~~~~g~ 136 (285)
.++++||.|+|+||+.|++ .|.++++.++++..++.++.+. . ...|+ ++++. +|.+. +
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~---k-- 96 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFS---K-- 96 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEE---E--
Confidence 4689999999999999975 8899999999966666665442 1 23454 46653 55332 1
Q ss_pred ceeecCCCchhHHHHHHHhhhcccc--------------------ccccccHHHHHHHHHhCCeEEEEEECCCChhh-HH
Q psy159 137 PSIYRGDLSEEEEVLQWLITQKTED--------------------RIELITRVMLETMVEETQYLAVYFYKLNCNIC-DQ 195 (285)
Q Consensus 137 ~~~y~g~~~~~~~l~~fi~~~~~~~--------------------~v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c-~~ 195 (285)
+.-+|.... .+-+|++...... ....+.. +|.+++-+....+|..|+|...+- ..
T Consensus 97 -~dvnG~~~~--pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~W-NF~KFLv~~~G~vv~r~~~~~~p~~~~ 172 (183)
T PRK10606 97 -IEVNGEGRH--PLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILW-NFEKFLVGRDGQVIQRFSPDMTPEDPI 172 (183)
T ss_pred -EccCCCCCC--HHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccc-cCEEEEECCCCcEEEEECCCCCCCHHH
Confidence 233444443 4778887655310 0111222 477765554455667777766542 23
Q ss_pred HHHHHHHH
Q psy159 196 ILEGLEKV 203 (285)
Q Consensus 196 ~~~~~~~l 203 (285)
+...++++
T Consensus 173 i~~~i~~~ 180 (183)
T PRK10606 173 VMESIKLA 180 (183)
T ss_pred HHHHHHHH
Confidence 44444433
No 254
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.75 E-value=7.4e-05 Score=51.39 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=39.5
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---Ch-----hHHhhhCCCCCCeEEEEcccc
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DP-----RYARKWGVTKLPAVVYFRHRF 136 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~-----~l~~~~~i~~~Ptl~~~~~g~ 136 (285)
++.|+++||++|+++.+.+.+++ ... .+.+..++ +. .+.+..|+.++|+++ .+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence 47899999999999999999875 221 25566655 22 256667999999974 3554
No 255
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.74 E-value=0.00025 Score=54.36 Aligned_cols=39 Identities=28% Similarity=0.554 Sum_probs=30.6
Q ss_pred CeEEEEE-ECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 179 QYLAVYF-YKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 179 ~~~~v~F-~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
++++|.| ++.||+.|+...+.+.++.+++...++.++.+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V 63 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAV 63 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEE
Confidence 4444554 58999999999999999999986545777766
No 256
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.74 E-value=0.00047 Score=64.31 Aligned_cols=132 Identities=12% Similarity=0.128 Sum_probs=93.5
Q ss_pred CCCeEEEeecC--ccccccCCCcchHHHHHHhhcCCCcccccceeecChhHHHHHHhcCCc-EEEEEeCCCChhHHHHHH
Q psy159 17 NLPSLVYFRKQ--VPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEF-VTVFFYETDHKDSVKVLE 93 (285)
Q Consensus 17 ~~Ptl~~~~~~--~~~~y~g~~~~~~~i~~fi~~~~~p~~~~~v~~l~~~~f~~~~~~~~~-~lv~Fya~~c~~C~~~~~ 93 (285)
..|++.+.++| .-+.|.|--.-. ++..|+..-..- +..-..|+++..+.+-.=+++ -+-.|+++.|++|.....
T Consensus 60 ~~p~~~~~~~~~~~~i~f~g~P~g~-Ef~s~i~~i~~~--~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~ 136 (517)
T PRK15317 60 RKPSFSITRPGEDTGVRFAGIPMGH-EFTSLVLALLQV--GGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQ 136 (517)
T ss_pred CCCEEEEEcCCccceEEEEecCccH-HHHHHHHHHHHh--cCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHH
Confidence 47999998776 345687766656 777776542110 111334677776666443344 477899999999999999
Q ss_pred HHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHHHHHhhh
Q psy159 94 RLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 94 ~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~~fi~~~ 157 (285)
.+.++|.... +|..-.+| .++++.+|++.+.|++++ +|+ ..+.|....+ ++++.+.+.
T Consensus 137 ~~~~~a~~~~--~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~-~~~~g~~~~~-~~~~~~~~~ 197 (517)
T PRK15317 137 ALNLMAVLNP--NITHTMIDGALFQDEVEARNIMAVPTVFL--NGE-EFGQGRMTLE-EILAKLDTG 197 (517)
T ss_pred HHHHHHHhCC--CceEEEEEchhCHhHHHhcCCcccCEEEE--CCc-EEEecCCCHH-HHHHHHhcc
Confidence 9999877544 46666666 899999999999999865 454 4577877775 788888753
No 257
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.73 E-value=0.00024 Score=53.91 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=53.7
Q ss_pred CCeEEEEEE-CCCChhhHHHHHHHHHHHhhcCcCCeEEEEE------------------------cChHHHHhcCCccc-
Q psy159 178 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------QDPQLAKRYSIKTF- 231 (285)
Q Consensus 178 ~~~~~v~F~-a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------~~~~~~~~~~v~~~- 231 (285)
+++++|.|| +.||+.|....+.+.++..++...++.++.+ ....+.+.|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 678899999 5899999999999998888876544666555 23457778888877
Q ss_pred --------CeEEEEe-CCeEE-EEecCC
Q psy159 232 --------PALVYFR-NGNPL-IFEGEN 249 (285)
Q Consensus 232 --------Ptl~~~~-~g~~~-~y~g~~ 249 (285)
|+.+++. +|+.+ .|.|..
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~ 130 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVK 130 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCC
Confidence 8888885 57654 666655
No 258
>KOG3425|consensus
Probab=97.71 E-value=0.00028 Score=50.87 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=51.9
Q ss_pred HHHHHHHHh---CCeEEEEEECC--------CChhhHHHHHHHHHHHhhcCcCCeEEEEE----------cChHHHHhcC
Q psy159 169 VMLETMVEE---TQYLAVYFYKL--------NCNICDQILEGLEKVDDECDIYGIHMVKI----------QDPQLAKRYS 227 (285)
Q Consensus 169 ~~~~~~~~~---~~~~~v~F~a~--------~c~~c~~~~~~~~~la~~~~~~~i~~~~i----------~~~~~~~~~~ 227 (285)
++|++.+++ ++.++++|++. ||+.|.+..|.+.+.-+.... ++.|+.+ .+..+....+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcccCCCCccccCCC
Confidence 456666543 55588999864 999999999999988775554 6777777 2344555666
Q ss_pred C-cccCeEEEEeC
Q psy159 228 I-KTFPALVYFRN 239 (285)
Q Consensus 228 v-~~~Ptl~~~~~ 239 (285)
+ +++|||+=+++
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 6 89999999875
No 259
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.69 E-value=0.00056 Score=48.85 Aligned_cols=80 Identities=23% Similarity=0.360 Sum_probs=55.9
Q ss_pred cccHHHHHHHHHh--CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-------cChHHHHhcCCcc-cCeE
Q psy159 165 LITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-------QDPQLAKRYSIKT-FPAL 234 (285)
Q Consensus 165 ~~~~~~~~~~~~~--~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------~~~~~~~~~~v~~-~Ptl 234 (285)
.-+.+++++++++ .++++|+=++..|+-.......|++......+ .+.++.+ -...++++|||.+ -|.+
T Consensus 4 L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~-~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 4 LTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD-EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp --SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred cCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc-cceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 3467789998887 88888888999999999999999988887764 2555555 3456899999975 6999
Q ss_pred EEEeCCeEEEE
Q psy159 235 VYFRNGNPLIF 245 (285)
Q Consensus 235 ~~~~~g~~~~y 245 (285)
+++++|+.+-.
T Consensus 83 ili~~g~~v~~ 93 (105)
T PF11009_consen 83 ILIKNGKVVWH 93 (105)
T ss_dssp EEEETTEEEEE
T ss_pred EEEECCEEEEE
Confidence 99999987633
No 260
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.69 E-value=0.00024 Score=59.01 Aligned_cols=80 Identities=14% Similarity=0.282 Sum_probs=58.4
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC------------ChhHHhhhCCCCCCeEEEEcccc--ce
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------DPRYARKWGVTKLPAVVYFRHRF--PS 138 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~------------~~~l~~~~~i~~~Ptl~~~~~g~--~~ 138 (285)
++.-|++||.+.|++|.++.|.+..++++++- .+..+.+| +...++++||..+|++++..... ..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~-~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL-SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC-eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence 35678999999999999999999999999853 25556665 23466789999999999987643 22
Q ss_pred -eecCCCchhHHHHHHH
Q psy159 139 -IYRGDLSEEEEVLQWL 154 (285)
Q Consensus 139 -~y~g~~~~~~~l~~fi 154 (285)
.-.|..+.. +|.+=+
T Consensus 222 pv~~G~iS~d-eL~~Ri 237 (248)
T PRK13703 222 PLSYGFITQD-DLAKRF 237 (248)
T ss_pred EEeeccCCHH-HHHHHH
Confidence 234555553 565444
No 261
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.68 E-value=6.4e-05 Score=58.29 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=35.2
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA 113 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~ 113 (285)
.+++++|.|+++||+.|++..|.+.++.++++..++.++.++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~ 62 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFP 62 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEe
Confidence 467889999999999999999999999999966566665543
No 262
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.68 E-value=0.00027 Score=51.92 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=40.2
Q ss_pred cCCcEEEEEeCC-------CChhHHHHHHHHHhHHhhcCCCCcEEEE--eC------Ch--hHHh--hhCCCCCCeEEEE
Q psy159 72 ENEFVTVFFYET-------DHKDSVKVLERLEKIDGETDNMDITFVK--MA------DP--RYAR--KWGVTKLPAVVYF 132 (285)
Q Consensus 72 ~~~~~lv~Fya~-------~c~~C~~~~~~~~~~a~~~~~~~v~~~~--~~------~~--~l~~--~~~i~~~Ptl~~~ 132 (285)
++++++|+|+++ ||+.|....|.++++-..... +..++. +. ++ ..-+ +++|+++|||+-+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 457888999865 999999999999887666522 355543 32 22 2333 4999999999998
Q ss_pred ccc
Q psy159 133 RHR 135 (285)
Q Consensus 133 ~~g 135 (285)
..+
T Consensus 97 ~~~ 99 (119)
T PF06110_consen 97 ETG 99 (119)
T ss_dssp TSS
T ss_pred CCC
Confidence 766
No 263
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.66 E-value=0.00041 Score=48.42 Aligned_cols=94 Identities=15% Similarity=0.285 Sum_probs=70.2
Q ss_pred ChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCC-cEEEEeC---ChhHHhhhCCC----CCC-eEEEE
Q psy159 62 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMD-ITFVKMA---DPRYARKWGVT----KLP-AVVYF 132 (285)
Q Consensus 62 ~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~-v~~~~~~---~~~l~~~~~i~----~~P-tl~~~ 132 (285)
+...|.+++.....+||+|..+--. -.+....+.++|+..++.+ +.++.+. ...||+++.+. .-| +|.-|
T Consensus 8 d~KdfKKLLRTr~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHY 86 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSKSAKS-AEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHY 86 (112)
T ss_pred chHHHHHHHhhcCcEEEEEecchhh-HHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcc
Confidence 4578999999999999999876543 3445558899999997764 4444443 46899999998 555 34447
Q ss_pred ccccc-eeecCCCchhHHHHHHHhhh
Q psy159 133 RHRFP-SIYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 133 ~~g~~-~~y~g~~~~~~~l~~fi~~~ 157 (285)
++|.- ..|+-..+.. +|+.|+.+.
T Consensus 87 KdG~fHkdYdR~~t~k-Smv~FlrDP 111 (112)
T cd03067 87 KDGDFHTEYNRQLTFK-SMVAFLRDP 111 (112)
T ss_pred cCCCccccccchhhHH-HHHHHhhCC
Confidence 78875 6788888876 999998753
No 264
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.66 E-value=0.00066 Score=49.51 Aligned_cols=95 Identities=11% Similarity=0.131 Sum_probs=66.7
Q ss_pred eecChhHHHHHHhcCCcEEEEEe----CCCChhHHHHHHHHHhHHhhcC-CCCcEEEEeC---ChhHHhhhCCCC----C
Q psy159 59 EEVNRRMLDKLLEENEFVTVFFY----ETDHKDSVKVLERLEKIDGETD-NMDITFVKMA---DPRYARKWGVTK----L 126 (285)
Q Consensus 59 ~~l~~~~f~~~~~~~~~~lv~Fy----a~~c~~C~~~~~~~~~~a~~~~-~~~v~~~~~~---~~~l~~~~~i~~----~ 126 (285)
.++|.++..... ..+.++.|| +..-..-..+...+.++|+.++ +. +.|+.+| .....+.||+.. .
T Consensus 2 ~~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gk-i~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 2 GHRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRK-LNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred CeeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCe-EEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 456778877774 334445544 2233445778999999999998 44 8888888 345788899984 9
Q ss_pred CeEEEEcc-ccceeecCCC-chhHHHHHHHhhh
Q psy159 127 PAVVYFRH-RFPSIYRGDL-SEEEEVLQWLITQ 157 (285)
Q Consensus 127 Ptl~~~~~-g~~~~y~g~~-~~~~~l~~fi~~~ 157 (285)
|++.++.. ++.+...+.. +.+ +|.+|+.+.
T Consensus 79 P~~~i~~~~~~KY~~~~~~~t~e-~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKGKKYVMEEEFSDVD-ALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCCCccCCCcccCCHH-HHHHHHHHh
Confidence 99999874 3334446666 664 899998763
No 265
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.63 E-value=0.00038 Score=55.11 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=31.3
Q ss_pred cCCcEEEEEe-CCCChhHHHHHHHHHhHHhhcCCCCcEEE
Q psy159 72 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFV 110 (285)
Q Consensus 72 ~~~~~lv~Fy-a~~c~~C~~~~~~~~~~a~~~~~~~v~~~ 110 (285)
.++.++|.|| +.||+.|....+.+.++.+++...++.++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv 67 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVL 67 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEE
Confidence 3578889999 89999999999999999888854444444
No 266
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.61 E-value=0.0012 Score=49.52 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=70.9
Q ss_pred eeecChhH-HHHHHhcCCcEEEEEeCC--CChh-H-HHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCC--CC
Q psy159 58 IEEVNRRM-LDKLLEENEFVTVFFYET--DHKD-S-VKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTK--LP 127 (285)
Q Consensus 58 v~~l~~~~-f~~~~~~~~~~lv~Fya~--~c~~-C-~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~--~P 127 (285)
|.+|++++ ++..-.++...+|.|... .|.. + ..+...+.++|+.+++..+.|+.+| ...+.+.|||.+ +|
T Consensus 4 ~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P 83 (130)
T cd02983 4 IIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYP 83 (130)
T ss_pred eEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCC
Confidence 67776554 454443444444555432 2332 2 5678899999999976557888777 556899999954 99
Q ss_pred eEEEEcccc-cee-ecCCCchhHHHHHHHhhhccc
Q psy159 128 AVVYFRHRF-PSI-YRGDLSEEEEVLQWLITQKTE 160 (285)
Q Consensus 128 tl~~~~~g~-~~~-y~g~~~~~~~l~~fi~~~~~~ 160 (285)
+++++...+ .+. +.|+.+.+ ++.+|+.+....
T Consensus 84 ~v~i~~~~~~KY~~~~~~~t~e-~i~~Fv~~~l~G 117 (130)
T cd02983 84 AMVAINFRKMKFATLKGSFSED-GINEFLRELSYG 117 (130)
T ss_pred EEEEEecccCccccccCccCHH-HHHHHHHHHHcC
Confidence 999998754 343 67888886 999999987753
No 267
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.59 E-value=0.00043 Score=57.50 Aligned_cols=79 Identities=15% Similarity=0.253 Sum_probs=55.3
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEE----------------------------------------Ee
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV----------------------------------------KM 112 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~----------------------------------------~~ 112 (285)
++..++.|..|.|++|+++.+.+.++.+. +..+.+. .+
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c 184 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC 184 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence 46788999999999999999998776431 0001000 01
Q ss_pred C-----ChhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHHHHHhhh
Q psy159 113 A-----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 113 ~-----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~~fi~~~ 157 (285)
+ +..+++++||++.|+++ +.+|+.+ .|....+ .|.+++.+.
T Consensus 185 ~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~--~G~~~~~-~L~~~l~~~ 230 (232)
T PRK10877 185 DVDIADHYALGVQFGVQGTPAIV-LSNGTLV--PGYQGPK-EMKAFLDEH 230 (232)
T ss_pred cchHHHhHHHHHHcCCccccEEE-EcCCeEe--eCCCCHH-HHHHHHHHc
Confidence 1 56688899999999988 6677653 6776665 788887653
No 268
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.58 E-value=0.00072 Score=56.58 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=54.2
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEc------------ChHHHHhcCCcccCeEEEEeCC--eEE
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ------------DPQLAKRYSIKTFPALVYFRNG--NPL 243 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~------------~~~~~~~~~v~~~Ptl~~~~~g--~~~ 243 (285)
++--+++||...|++|+++.|+++.+++++.- .+..+.++ +...+++++|+.+|++++...+ +..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi-~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~ 228 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI-SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMS 228 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCC-eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEE
Confidence 45678999999999999999999999999863 44444441 2457889999999999988643 333
Q ss_pred -EEecCCc
Q psy159 244 -IFEGENK 250 (285)
Q Consensus 244 -~y~g~~~ 250 (285)
.-.|-.+
T Consensus 229 pv~~G~iS 236 (256)
T TIGR02739 229 PLAYGFIS 236 (256)
T ss_pred EEeeccCC
Confidence 3346665
No 269
>KOG1672|consensus
Probab=97.57 E-value=0.00019 Score=56.20 Aligned_cols=83 Identities=23% Similarity=0.338 Sum_probs=69.5
Q ss_pred cceeec-ChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEE
Q psy159 56 NEIEEV-NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 131 (285)
Q Consensus 56 ~~v~~l-~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~ 131 (285)
+...++ +...|-........+++.||-|.-..|+-|-..++.+|+..- +..|++++ .|=++.+++|.-.|++.+
T Consensus 66 G~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~--eTrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV--ETRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred ceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc--cceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 446666 477777777777889999999999999999999999998873 36777777 677899999999999999
Q ss_pred Eccccceee
Q psy159 132 FRHRFPSIY 140 (285)
Q Consensus 132 ~~~g~~~~y 140 (285)
|++|....|
T Consensus 144 ~k~g~~~D~ 152 (211)
T KOG1672|consen 144 FKNGKTVDY 152 (211)
T ss_pred EEcCEEEEE
Confidence 999987543
No 270
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.57 E-value=0.00064 Score=52.62 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=31.7
Q ss_pred cCCcEEEEEeCC-CChhHHHHHHHHHhHHhhcCCCCcEEEEe
Q psy159 72 ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFVKM 112 (285)
Q Consensus 72 ~~~~~lv~Fya~-~c~~C~~~~~~~~~~a~~~~~~~v~~~~~ 112 (285)
.+++++|.||+. ||+.|....+.+.++.+.++..++.++.+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~I 70 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGI 70 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 457899999976 68889999999999988885555655543
No 271
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.55 E-value=0.00056 Score=49.10 Aligned_cols=85 Identities=19% Similarity=0.298 Sum_probs=59.4
Q ss_pred ccccccHHHHHHHHHhCCeEEEEEECC--CChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEE
Q psy159 162 RIELITRVMLETMVEETQYLAVYFYKL--NCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 162 ~v~~~~~~~~~~~~~~~~~~~v~F~a~--~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~ 236 (285)
....++.++++.++......+++|..+ .+.-+..+.=++-+|.+.+.+ ....+.+ ....+..+|++..+|++++
T Consensus 10 g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~-~~~~avv~~~~e~~L~~r~gv~~~PaLvf 88 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG-RFRGAVVARAAERALAARFGVRRWPALVF 88 (107)
T ss_dssp TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT-SEEEEEEEHHHHHHHHHHHT-TSSSEEEE
T ss_pred CCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC-ccceEEECchhHHHHHHHhCCccCCeEEE
Confidence 344567778888888877765555432 234444555577788888886 5665555 6778999999999999999
Q ss_pred EeCCeEE-EEec
Q psy159 237 FRNGNPL-IFEG 247 (285)
Q Consensus 237 ~~~g~~~-~y~g 247 (285)
+++|+++ .-.|
T Consensus 89 ~R~g~~lG~i~g 100 (107)
T PF07449_consen 89 FRDGRYLGAIEG 100 (107)
T ss_dssp EETTEEEEEEES
T ss_pred EECCEEEEEecC
Confidence 9999877 3344
No 272
>KOG3425|consensus
Probab=97.54 E-value=0.00057 Score=49.29 Aligned_cols=70 Identities=17% Similarity=0.334 Sum_probs=48.6
Q ss_pred hHHHHHH---hcCCcEEEEEeCC--------CChhHHHHHHHHHhHHhhcCCCCcEEEEeC--C--------hhHHhhhC
Q psy159 64 RMLDKLL---EENEFVTVFFYET--------DHKDSVKVLERLEKIDGETDNMDITFVKMA--D--------PRYARKWG 122 (285)
Q Consensus 64 ~~f~~~~---~~~~~~lv~Fya~--------~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~--~--------~~l~~~~~ 122 (285)
++|++++ .+++.++|+|+++ ||+.|.+..|.+.++-+... .++.|+.++ + -.+.+..+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecCCCcccCCCCccccCCC
Confidence 4565554 3456699999975 99999999999998877552 235555543 2 23444556
Q ss_pred C-CCCCeEEEEcc
Q psy159 123 V-TKLPAVVYFRH 134 (285)
Q Consensus 123 i-~~~Ptl~~~~~ 134 (285)
+ .+.|||+=+.+
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 6 88999988765
No 273
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.53 E-value=0.0019 Score=48.56 Aligned_cols=90 Identities=22% Similarity=0.323 Sum_probs=64.4
Q ss_pred ccccccHHHHHHHHHhCCeEEEEEECC--CChh-h-HHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCc--ccC
Q psy159 162 RIELITRVMLETMVEETQYLAVYFYKL--NCNI-C-DQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIK--TFP 232 (285)
Q Consensus 162 ~v~~~~~~~~~~~~~~~~~~~v~F~a~--~c~~-c-~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~--~~P 232 (285)
+++..+.+.+++...+++.++|.|... .|.. + ..+...++++|+++++..+.|+.+ ....+.+.|||. ++|
T Consensus 4 ~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P 83 (130)
T cd02983 4 IIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYP 83 (130)
T ss_pred eEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCC
Confidence 444555666677777777788888654 3332 3 457889999999999833899998 556699999996 499
Q ss_pred eEEEEeCCe-EEE-EecCCcc
Q psy159 233 ALVYFRNGN-PLI-FEGENKI 251 (285)
Q Consensus 233 tl~~~~~g~-~~~-y~g~~~~ 251 (285)
+++++...+ .+. +.|..+.
T Consensus 84 ~v~i~~~~~~KY~~~~~~~t~ 104 (130)
T cd02983 84 AMVAINFRKMKFATLKGSFSE 104 (130)
T ss_pred EEEEEecccCccccccCccCH
Confidence 999997544 333 6687764
No 274
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.51 E-value=0.00045 Score=49.57 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=56.4
Q ss_pred eeecChhHHHHHHhcCCcEEEEEeCCCC---hhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEE
Q psy159 58 IEEVNRRMLDKLLEENEFVTVFFYETDH---KDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 131 (285)
Q Consensus 58 v~~l~~~~f~~~~~~~~~~lv~Fya~~c---~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~ 131 (285)
...++.++++.++..+...+ .|.+..| +.+...+-.+.++.+.+.+. +..+.+. +..+..+||+..+|++++
T Consensus 11 ~~~vd~~~ld~~l~~~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~~-~~~avv~~~~e~~L~~r~gv~~~PaLvf 88 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPGDAV-LFFAGDPARFPETADVAVILPELVKAFPGR-FRGAVVARAAERALAARFGVRRWPALVF 88 (107)
T ss_dssp EEEE-CCCHHHHHHCCSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTTS-EEEEEEEHHHHHHHHHHHT-TSSSEEEE
T ss_pred CeeechhhHHHHHhCCCcEE-EEECCCCCcCcccccceeEcHHHHHhhhCc-cceEEECchhHHHHHHHhCCccCCeEEE
Confidence 67788999999988866654 4444444 45666666788888888554 3333333 788999999999999999
Q ss_pred Eccccce
Q psy159 132 FRHRFPS 138 (285)
Q Consensus 132 ~~~g~~~ 138 (285)
+++|+..
T Consensus 89 ~R~g~~l 95 (107)
T PF07449_consen 89 FRDGRYL 95 (107)
T ss_dssp EETTEEE
T ss_pred EECCEEE
Confidence 9999764
No 275
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.50 E-value=0.0015 Score=50.18 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=31.7
Q ss_pred CeEEEEEE-CCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 179 QYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 179 ~~~~v~F~-a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
++++|.|| +.||+.|....+.++++.+++...++.+..+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~v 68 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGI 68 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 67777777 8999999999999999998887545666555
No 276
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.49 E-value=0.0019 Score=46.51 Aligned_cols=89 Identities=21% Similarity=0.397 Sum_probs=67.8
Q ss_pred ChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEcc-------
Q psy159 62 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRH------- 134 (285)
Q Consensus 62 ~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~~------- 134 (285)
+.++++.++...+..+|-|+..--+ .....|.++|..++.. ..|+......++..+++ .|++++|++
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d-~~F~~~~~~~~~~~~~~--~~~ivl~~p~~~~~k~ 80 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRES-FRFAHTSDKQLLEKYGY--GEGVVLFRPPRLSNKF 80 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhc-CEEEEEChHHHHHhcCC--CCceEEEechhhhccc
Confidence 5677888887778888888866443 4677888999888543 78988888899999998 688888843
Q ss_pred -ccceeecCCCchhHHHHHHHhhh
Q psy159 135 -RFPSIYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 135 -g~~~~y~g~~~~~~~l~~fi~~~ 157 (285)
.....|.|..+.+ +|.+||..+
T Consensus 81 de~~~~y~g~~~~~-~l~~fi~~~ 103 (104)
T cd03069 81 EDSSVKFDGDLDSS-KIKKFIREN 103 (104)
T ss_pred CcccccccCcCCHH-HHHHHHHhh
Confidence 2235699988764 899999764
No 277
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.49 E-value=0.00051 Score=47.50 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=49.4
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCC-----hhHHhhhC--CCCCCeEEEEccccceeecCCCchhHH
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD-----PRYARKWG--VTKLPAVVYFRHRFPSIYRGDLSEEEE 149 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~-----~~l~~~~~--i~~~Ptl~~~~~g~~~~y~g~~~~~~~ 149 (285)
++.|+.+||++|+++...+++++..+++..+..+.++. ..+.+..+ ...+|+++ .+|+. -|+. ++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~---igg~---~~ 74 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKH---IGGC---TD 74 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEE---EcCH---HH
Confidence 67899999999999999999988765444455555542 23544444 47899975 36644 2332 36
Q ss_pred HHHHHhhhc
Q psy159 150 VLQWLITQK 158 (285)
Q Consensus 150 l~~fi~~~~ 158 (285)
+.+++..+.
T Consensus 75 ~~~~~~~~~ 83 (85)
T PRK11200 75 FEAYVKENL 83 (85)
T ss_pred HHHHHHHhc
Confidence 777776543
No 278
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.49 E-value=0.00062 Score=52.29 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=30.5
Q ss_pred CcEEEEEe-CCCChhHHHHHHHHHhHHhhcCCCCcEEEE
Q psy159 74 EFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVK 111 (285)
Q Consensus 74 ~~~lv~Fy-a~~c~~C~~~~~~~~~~a~~~~~~~v~~~~ 111 (285)
++++|.|| ++||+.|....|.+.++.++++..++.++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~ 67 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLG 67 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 66777776 899999999999999999888544565554
No 279
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.47 E-value=0.00042 Score=55.63 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=30.8
Q ss_pred cCCcEEEEEe-CCCChhHHHHHHHHHhHHhhcCCCCcEE
Q psy159 72 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITF 109 (285)
Q Consensus 72 ~~~~~lv~Fy-a~~c~~C~~~~~~~~~~a~~~~~~~v~~ 109 (285)
.+++++|.|| +.||+.|..-.+.+.++.+.++..++.+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~v 68 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEV 68 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcE
Confidence 4678899999 9999999999999999888884444433
No 280
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.47 E-value=0.0011 Score=55.15 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=53.5
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEc------------ChHHHHhcCCcccCeEEEEeCC--eEE
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ------------DPQLAKRYSIKTFPALVYFRNG--NPL 243 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~------------~~~~~~~~~v~~~Ptl~~~~~g--~~~ 243 (285)
++--+++||...|++|+++.|+++.+++++.- .+.-+.++ +...+++++|..+|++++...+ +..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~-~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL-SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC-eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence 44678999999999999999999999999873 34444441 3346678999999999998543 333
Q ss_pred -EEecCCc
Q psy159 244 -IFEGENK 250 (285)
Q Consensus 244 -~y~g~~~ 250 (285)
.-.|..+
T Consensus 222 pv~~G~iS 229 (248)
T PRK13703 222 PLSYGFIT 229 (248)
T ss_pred EEeeccCC
Confidence 3346665
No 281
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.46 E-value=0.00026 Score=54.78 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=33.9
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
+++++|.||+.||+ |....|.++++.+++++.++.+.-+
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v 60 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGF 60 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEe
Confidence 68899999999999 9999999999999997545666665
No 282
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.44 E-value=0.00068 Score=51.37 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=32.0
Q ss_pred cCCcEEEEEe-CCCChhHHHHHHHHHhHHhhcCCCCcEEEE
Q psy159 72 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVK 111 (285)
Q Consensus 72 ~~~~~lv~Fy-a~~c~~C~~~~~~~~~~a~~~~~~~v~~~~ 111 (285)
.+++++|.|| +.||+.|....|.+.++.++++..++.++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~ 61 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLG 61 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5678888888 789999999999999999888443455553
No 283
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.44 E-value=0.00032 Score=55.21 Aligned_cols=38 Identities=5% Similarity=0.074 Sum_probs=31.3
Q ss_pred cCCcEEEEEeCCC-ChhHHHHHHHHHhHHhhcCCCCcEEEE
Q psy159 72 ENEFVTVFFYETD-HKDSVKVLERLEKIDGETDNMDITFVK 111 (285)
Q Consensus 72 ~~~~~lv~Fya~~-c~~C~~~~~~~~~~a~~~~~~~v~~~~ 111 (285)
.+++++|.||+.| |+.|....|.+.++++.+. ++.++.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~ 81 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLC 81 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEE
Confidence 4678999999999 9999999999999988874 344443
No 284
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.43 E-value=0.0007 Score=46.80 Aligned_cols=59 Identities=25% Similarity=0.431 Sum_probs=41.1
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEc-C----hHHHHhcC--CcccCeEEEEeCCeE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-D----PQLAKRYS--IKTFPALVYFRNGNP 242 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-~----~~~~~~~~--v~~~Ptl~~~~~g~~ 242 (285)
++.|..+||++|+++.+.++++..++.+..+....+. . ..+.+..+ +.++|+++ .+|+.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ 68 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKH 68 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEE
Confidence 6788999999999999999999877654234444442 2 24554444 47899976 47764
No 285
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.42 E-value=0.0017 Score=52.09 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=48.0
Q ss_pred CCeEEEEEE-CCCChhhHHHHHHHHHHHhhcCcCCeEEEEE----------------------------cChHHHHhcCC
Q psy159 178 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI----------------------------QDPQLAKRYSI 228 (285)
Q Consensus 178 ~~~~~v~F~-a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----------------------------~~~~~~~~~~v 228 (285)
+++++|.|| +.||+.|....+.+.++..++...++.+..+ ....+++.|++
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 578999999 8999999999999998888876433443333 23356778887
Q ss_pred c------ccCeEEEE-eCCeEE
Q psy159 229 K------TFPALVYF-RNGNPL 243 (285)
Q Consensus 229 ~------~~Ptl~~~-~~g~~~ 243 (285)
. ..|+.+++ ++|+..
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~ 132 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQ 132 (187)
T ss_pred cccCCCceeeEEEEECCCCEEE
Confidence 5 35887777 577654
No 286
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.40 E-value=0.001 Score=42.57 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=37.0
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cC----hHHHHhcCCcccCeEEEEeCCeE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QD----PQLAKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~----~~~~~~~~v~~~Ptl~~~~~g~~ 242 (285)
++.|..++|++|+++...|++..- ...+..+ .. ..+.+..+..++|++.+ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i-----~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGI-----PYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTB-----EEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCC-----eeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 467899999999999988866532 2334444 22 22344449999999887 7764
No 287
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.39 E-value=0.003 Score=58.96 Aligned_cols=133 Identities=13% Similarity=0.157 Sum_probs=92.7
Q ss_pred CCCCeEEEeecCc--cccccCCCcchHHHHHHhhcCCCcccccceeecChhHHHHHHhcCCc-EEEEEeCCCChhHHHHH
Q psy159 16 INLPSLVYFRKQV--PLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEF-VTVFFYETDHKDSVKVL 92 (285)
Q Consensus 16 ~~~Ptl~~~~~~~--~~~y~g~~~~~~~i~~fi~~~~~p~~~~~v~~l~~~~f~~~~~~~~~-~lv~Fya~~c~~C~~~~ 92 (285)
...|++.+.++|. -+.|.|--.-. ++..|+..-..- +..-..|+++..+.+-.=.++ -+-.|+.+.|++|....
T Consensus 60 ~~~p~~~~~~~~~~~~i~f~g~P~g~-Ef~s~i~~i~~~--~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v 136 (515)
T TIGR03140 60 LRKPSFTILRDGADTGIRFAGIPGGH-EFTSLVLAILQV--GGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVV 136 (515)
T ss_pred CCCCeEEEecCCcccceEEEecCCcH-HHHHHHHHHHHh--cCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHH
Confidence 4579998887763 46687766656 777777552111 111344677777666433334 46789999999999999
Q ss_pred HHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHHHHHhhh
Q psy159 93 ERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 93 ~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~~fi~~~ 157 (285)
..+.+++.... +|..-.+| .++++.+|++.+.|++++ +|+ ..+.|..... ++++.+...
T Consensus 137 ~~~~~~a~~~p--~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~-~~~~g~~~~~-~~~~~l~~~ 198 (515)
T TIGR03140 137 QALNQMALLNP--NISHTMIDGALFQDEVEALGIQGVPAVFL--NGE-EFHNGRMDLA-ELLEKLEET 198 (515)
T ss_pred HHHHHHHHhCC--CceEEEEEchhCHHHHHhcCCcccCEEEE--CCc-EEEecCCCHH-HHHHHHhhc
Confidence 99988876654 46655566 899999999999999876 444 4577877765 777777654
No 288
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.37 E-value=0.0016 Score=47.82 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=59.7
Q ss_pred HHHHhcCCcEEEEEeCC----CChhHHHHHHHHHhHHhhcCCCCcEEEEeC-----ChhHHhhhCCCCCCeEEEEc--cc
Q psy159 67 DKLLEENEFVTVFFYET----DHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFR--HR 135 (285)
Q Consensus 67 ~~~~~~~~~~lv~Fya~----~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-----~~~l~~~~~i~~~Ptl~~~~--~g 135 (285)
...-++.+.++|+++++ ||..|+... .=+++.+.++. ++.+...| ...++..+++.++|++.++. ++
T Consensus 11 ~~ak~e~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~-~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~ 88 (116)
T cd02991 11 NDAKQELRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINT-RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDN 88 (116)
T ss_pred HHHHhhCCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHc-CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCC
Confidence 33345678999999999 788886543 11445555543 35555544 35689999999999999984 23
Q ss_pred cc---eeecCCCchhHHHHHHHhh
Q psy159 136 FP---SIYRGDLSEEEEVLQWLIT 156 (285)
Q Consensus 136 ~~---~~y~g~~~~~~~l~~fi~~ 156 (285)
+. ....|..+.+ +++..+..
T Consensus 89 ~~~vv~~i~G~~~~~-~ll~~L~~ 111 (116)
T cd02991 89 RMTIVGRLEGLIQPE-DLINRLTF 111 (116)
T ss_pred ceEEEEEEeCCCCHH-HHHHHHHH
Confidence 32 4588988886 77777654
No 289
>KOG3414|consensus
Probab=97.36 E-value=0.0011 Score=48.25 Aligned_cols=76 Identities=13% Similarity=0.281 Sum_probs=60.3
Q ss_pred cHHHHHHHHHh--CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCe
Q psy159 167 TRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 241 (285)
Q Consensus 167 ~~~~~~~~~~~--~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~ 241 (285)
+....+..+.+ .+.+++-|...|-+.|.++...+.++++..++. ..++-+ +-+.+.+.|++...|++++|=+++
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 45566676543 778899999999999999999999999998863 333333 567788999999999999997776
Q ss_pred EE
Q psy159 242 PL 243 (285)
Q Consensus 242 ~~ 243 (285)
..
T Consensus 89 Hm 90 (142)
T KOG3414|consen 89 HM 90 (142)
T ss_pred eE
Confidence 54
No 290
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.34 E-value=0.00053 Score=52.36 Aligned_cols=39 Identities=8% Similarity=0.144 Sum_probs=31.5
Q ss_pred cCCcEEEEEeCCC-ChhHHHHHHHHHhHHhhcCCCCcEEEEe
Q psy159 72 ENEFVTVFFYETD-HKDSVKVLERLEKIDGETDNMDITFVKM 112 (285)
Q Consensus 72 ~~~~~lv~Fya~~-c~~C~~~~~~~~~~a~~~~~~~v~~~~~ 112 (285)
.++++++.||+.| |++|....|.+.++.++++ ++.++.+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~I 64 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTI 64 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEE
Confidence 4678999999998 6999999999999988875 3555443
No 291
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.32 E-value=0.0025 Score=50.45 Aligned_cols=40 Identities=10% Similarity=0.287 Sum_probs=32.2
Q ss_pred CCeEEEEEE-CCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 178 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 178 ~~~~~v~F~-a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
++.++|.|| +.||++|....+.+.++.+++...++.+..+
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~I 69 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGV 69 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 578899999 7899999999999999988886534555544
No 292
>KOG2603|consensus
Probab=97.31 E-value=0.0014 Score=55.23 Aligned_cols=102 Identities=12% Similarity=0.209 Sum_probs=75.7
Q ss_pred ceeecChhHHHHHHhcC---CcEEEEEeCC----CChhHHHHHHHHHhHHhhcC--CC-----CcEEEEeC---ChhHHh
Q psy159 57 EIEEVNRRMLDKLLEEN---EFVTVFFYET----DHKDSVKVLERLEKIDGETD--NM-----DITFVKMA---DPRYAR 119 (285)
Q Consensus 57 ~v~~l~~~~f~~~~~~~---~~~lv~Fya~----~c~~C~~~~~~~~~~a~~~~--~~-----~v~~~~~~---~~~l~~ 119 (285)
.|..+|+++|..++.+. -.++|+|.|. .|.-|+.+..+|.-+|.... .. .+=|..+| .+++.+
T Consensus 41 ~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq 120 (331)
T KOG2603|consen 41 GVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQ 120 (331)
T ss_pred CeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHH
Confidence 48999999999998753 3477889876 79999999999999988762 11 24456666 688999
Q ss_pred hhCCCCCCeEEEEcc--ccc---ee---ecCCCchhHHHHHHHhhhcc
Q psy159 120 KWGVTKLPAVVYFRH--RFP---SI---YRGDLSEEEEVLQWLITQKT 159 (285)
Q Consensus 120 ~~~i~~~Ptl~~~~~--g~~---~~---y~g~~~~~~~l~~fi~~~~~ 159 (285)
+++++..|++.+|.+ |.+ .. ++-.... +++.+|+++...
T Consensus 121 ~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~A-e~iaqfv~~~tk 167 (331)
T KOG2603|consen 121 QLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEA-EQIAQFVADRTK 167 (331)
T ss_pred HhcccCCCeEEEeCCCccccccCccchhhhcchhH-HHHHHHHHHhhh
Confidence 999999999999965 221 11 2222234 389999998764
No 293
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.30 E-value=0.0069 Score=43.40 Aligned_cols=94 Identities=19% Similarity=0.367 Sum_probs=70.0
Q ss_pred eeec-ChhHHHHHHh-cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEcc-
Q psy159 58 IEEV-NRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRH- 134 (285)
Q Consensus 58 v~~l-~~~~f~~~~~-~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~~- 134 (285)
+..+ +.+.++.++. .....+|-|+..--+ .....|.++|..++.. ..|+...+..++..+++. .|++.++++
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d-~~F~~~~~~~~~~~~~~~-~~~i~l~~~~ 76 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPY-IKFFATFDSKVAKKLGLK-MNEVDFYEPF 76 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcC-CEEEEECcHHHHHHcCCC-CCcEEEeCCC
Confidence 3445 5677999998 777777777766443 3567889999988543 789888888888888775 688999876
Q ss_pred cc-ceee-cCCCchhHHHHHHHhhh
Q psy159 135 RF-PSIY-RGDLSEEEEVLQWLITQ 157 (285)
Q Consensus 135 g~-~~~y-~g~~~~~~~l~~fi~~~ 157 (285)
.. ...| .|..+.+ .|.+||..+
T Consensus 77 ~e~~~~y~~g~~~~~-~l~~fi~~~ 100 (102)
T cd03066 77 MEEPVTIPDKPYSEE-ELVDFVEEH 100 (102)
T ss_pred CCCCcccCCCCCCHH-HHHHHHHHh
Confidence 33 3568 7776664 899999764
No 294
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.28 E-value=0.0034 Score=48.56 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=49.8
Q ss_pred hCCeEEEEEECC-CChhhHHHHHHHHHHHhhcCcCCeEEEEE------------------------cChHHHHhcCCccc
Q psy159 177 ETQYLAVYFYKL-NCNICDQILEGLEKVDDECDIYGIHMVKI------------------------QDPQLAKRYSIKTF 231 (285)
Q Consensus 177 ~~~~~~v~F~a~-~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------~~~~~~~~~~v~~~ 231 (285)
.+++++|.||+. ||+.|....+.+.++.+++++.++.+..+ ....+.+.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 357889999976 68889998888888888876545666655 23346677776543
Q ss_pred ------------CeEEEE-eCCeEE-EEecCC
Q psy159 232 ------------PALVYF-RNGNPL-IFEGEN 249 (285)
Q Consensus 232 ------------Ptl~~~-~~g~~~-~y~g~~ 249 (285)
|+.+++ ++|+.+ .|.|..
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~ 140 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFK 140 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCC
Confidence 555555 477655 666643
No 295
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.27 E-value=0.00052 Score=56.88 Aligned_cols=41 Identities=10% Similarity=0.239 Sum_probs=35.0
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
.+++++|.||++||+.|....|.++++.+++++.++.+.-+
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV 138 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAF 138 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 36899999999999999999999999999998645666555
No 296
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.27 E-value=0.0014 Score=52.45 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=31.6
Q ss_pred cCCcEEEEEe-CCCChhHHHHHHHHHhHHhhcCCCCcEEE
Q psy159 72 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFV 110 (285)
Q Consensus 72 ~~~~~lv~Fy-a~~c~~C~~~~~~~~~~a~~~~~~~v~~~ 110 (285)
.++++++.|| +.||+.|..-.+.+.++.+++...++.++
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vi 69 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVY 69 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3567888889 99999999999999999988855555444
No 297
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.26 E-value=0.00057 Score=52.93 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=33.8
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
+++++|.|+++||++|+...|.+.++.++++..++.+..+
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i 61 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAF 61 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEE
Confidence 6788999999999999999999999999998545665544
No 298
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.25 E-value=0.0012 Score=53.40 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=49.7
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEE-----------------------------------------E
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV-----------------------------------------K 111 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~-----------------------------------------~ 111 (285)
++..++.|++++|++|+++.+.+.+... +..+.+. .
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~---~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNAD---GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccC---ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 4788999999999999999998864110 0000000 0
Q ss_pred eC-----ChhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHHHH
Q psy159 112 MA-----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQW 153 (285)
Q Consensus 112 ~~-----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~~f 153 (285)
++ +..+++++||++.|+++ +.+|.. ..|....+ .|.++
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~--~~G~~~~~-~l~~~ 196 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGRV--VPGAPPAA-QLEAL 196 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCeE--ecCCCCHH-HHHhh
Confidence 00 45688899999999997 777755 45666554 66655
No 299
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.24 E-value=0.0027 Score=45.33 Aligned_cols=77 Identities=22% Similarity=0.334 Sum_probs=54.5
Q ss_pred ChhHHHHHHhc--CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC-CCcEEEEeC-----ChhHHhhhCCCC-CCeEEEE
Q psy159 62 NRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA-----DPRYARKWGVTK-LPAVVYF 132 (285)
Q Consensus 62 ~~~~f~~~~~~--~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~-~~v~~~~~~-----~~~l~~~~~i~~-~Ptl~~~ 132 (285)
|.+.++.+++. .++++|+=.+..|+-.......|++......+ ..+.++.+- ...+|.+|||.. -|.++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 57889998876 67888888999999999999999888777643 334444432 456789999975 8999999
Q ss_pred ccccce
Q psy159 133 RHRFPS 138 (285)
Q Consensus 133 ~~g~~~ 138 (285)
++|+.+
T Consensus 86 ~~g~~v 91 (105)
T PF11009_consen 86 KNGKVV 91 (105)
T ss_dssp ETTEEE
T ss_pred ECCEEE
Confidence 999874
No 300
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.23 E-value=0.0018 Score=42.71 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=34.9
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-ChhHHhh----hCCCCCCeEEE
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARK----WGVTKLPAVVY 131 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~~l~~~----~~i~~~Ptl~~ 131 (285)
++.|+++||++|.++...+.+. +..+..+.++ +...... .+..++|++.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5789999999999998888764 2234455555 3443333 36789999875
No 301
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.23 E-value=0.015 Score=42.40 Aligned_cols=96 Identities=16% Similarity=0.340 Sum_probs=64.2
Q ss_pred ccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHH-hhcC-cCCeEEEEE--------cChHHHHhcCC--ccc
Q psy159 164 ELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVD-DECD-IYGIHMVKI--------QDPQLAKRYSI--KTF 231 (285)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la-~~~~-~~~i~~~~i--------~~~~~~~~~~v--~~~ 231 (285)
..++.-+|++.+...+.++|.|-.... .=.-...|.++| +... ..++-++.+ +|.+++++|+| ..+
T Consensus 7 v~LD~~tFdKvi~kf~~~LVKFD~ayP--yGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~f 84 (126)
T PF07912_consen 7 VPLDELTFDKVIPKFKYVLVKFDVAYP--YGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDF 84 (126)
T ss_dssp EEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-
T ss_pred eeccceehhheeccCceEEEEEeccCC--CcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccC
Confidence 367788999999999999999964322 112345566676 3332 236888888 78999999999 569
Q ss_pred CeEEEEeCC--eEEEE--ecCCccchhHHHHHhhhc
Q psy159 232 PALVYFRNG--NPLIF--EGENKILKGTYIGTYIST 263 (285)
Q Consensus 232 Ptl~~~~~g--~~~~y--~g~~~~e~~~~~~~~~~~ 263 (285)
|.+.+|..| +++.| .|..+ .+.+..|..++
T Consensus 85 Pv~~LF~~~~~~pv~~p~~~~~t--~~~l~~fvk~~ 118 (126)
T PF07912_consen 85 PVIYLFVGDKEEPVRYPFDGDVT--ADNLQRFVKSN 118 (126)
T ss_dssp SEEEEEESSTTSEEEE-TCS-S---HHHHHHHHHHT
T ss_pred CEEEEecCCCCCCccCCccCCcc--HHHHHHHHHhC
Confidence 999999854 58899 67675 33455555554
No 302
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.21 E-value=0.00058 Score=54.61 Aligned_cols=42 Identities=5% Similarity=0.017 Sum_probs=32.8
Q ss_pred cCCcE-EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC
Q psy159 72 ENEFV-TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA 113 (285)
Q Consensus 72 ~~~~~-lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~ 113 (285)
.++++ ++.++|+||+.|.+..|.++++.+++++.++.++.++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEe
Confidence 35554 4566999999999999999999999966566666543
No 303
>KOG0911|consensus
Probab=97.21 E-value=0.00037 Score=56.06 Aligned_cols=79 Identities=13% Similarity=0.336 Sum_probs=65.0
Q ss_pred cHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccCeEEEEeCCeEE
Q psy159 167 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL 243 (285)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~Ptl~~~~~g~~~ 243 (285)
....| +....+..++.||++||..|+++...+..+++..+ ++.+.++ ..+.++..+.+...|...++..|+.+
T Consensus 8 ~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v 83 (227)
T KOG0911|consen 8 FQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKV 83 (227)
T ss_pred hHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhh
Confidence 34445 44467788999999999999999999999999985 5888888 67889999999999999999888766
Q ss_pred -EEecCC
Q psy159 244 -IFEGEN 249 (285)
Q Consensus 244 -~y~g~~ 249 (285)
+..|..
T Consensus 84 ~~l~~~~ 90 (227)
T KOG0911|consen 84 DRLSGAD 90 (227)
T ss_pred hhhhccC
Confidence 444443
No 304
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.20 E-value=0.0027 Score=49.92 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=31.1
Q ss_pred CCeEEEEEECCC-ChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 178 TQYLAVYFYKLN-CNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 178 ~~~~~v~F~a~~-c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
+++++|.||+.| |+.|....+.+.++.+++. ++.+..+
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~v 82 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCI 82 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEE
Confidence 678999999999 9999999999999988874 3444444
No 305
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.19 E-value=0.0026 Score=51.74 Aligned_cols=83 Identities=8% Similarity=0.107 Sum_probs=52.0
Q ss_pred CCcEE-EEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEe--C----------------------------ChhHHhhh
Q psy159 73 NEFVT-VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--A----------------------------DPRYARKW 121 (285)
Q Consensus 73 ~~~~l-v~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~--~----------------------------~~~l~~~~ 121 (285)
++.++ +.|++.||+.|..-.+.+.++.++++..++.++.+ | +..+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 44444 45789999999999999988887774444433321 1 34566777
Q ss_pred CCC------CCCeEEEEccccceee------cCCCchhHHHHHHHhh
Q psy159 122 GVT------KLPAVVYFRHRFPSIY------RGDLSEEEEVLQWLIT 156 (285)
Q Consensus 122 ~i~------~~Ptl~~~~~g~~~~y------~g~~~~~~~l~~fi~~ 156 (285)
|+. ..|+.+++.+...+.+ .+.++.+ ++++.+..
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~-ellr~l~~ 152 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNID-EIIRITKA 152 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHH-HHHHHHHH
Confidence 774 4688888865333221 3345554 67666654
No 306
>KOG3171|consensus
Probab=97.18 E-value=0.0015 Score=52.11 Aligned_cols=80 Identities=19% Similarity=0.368 Sum_probs=66.6
Q ss_pred ccccccHHHHHHHHHh---CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--cChHHHHhcCCcccCeEEE
Q psy159 162 RIELITRVMLETMVEE---TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 162 ~v~~~~~~~~~~~~~~---~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~v~~~Ptl~~ 236 (285)
+.+.-+.+.|-+.+.. .-.++|..|-+-..-|..+...+.-||.+|. .++|.++ .+....++|...++|+|++
T Consensus 140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP--~vKFckikss~~gas~~F~~n~lP~Lli 217 (273)
T KOG3171|consen 140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP--IVKFCKIKSSNTGASDRFSLNVLPTLLI 217 (273)
T ss_pred EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC--ceeEEEeeeccccchhhhcccCCceEEE
Confidence 4455577788777654 3357788999999999999999999999998 5899999 6677788999999999999
Q ss_pred EeCCeEE
Q psy159 237 FRNGNPL 243 (285)
Q Consensus 237 ~~~g~~~ 243 (285)
|++|+.+
T Consensus 218 YkgGeLI 224 (273)
T KOG3171|consen 218 YKGGELI 224 (273)
T ss_pred eeCCchh
Confidence 9999754
No 307
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.17 E-value=0.0033 Score=52.24 Aligned_cols=68 Identities=16% Similarity=0.377 Sum_probs=47.6
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEE----------------------------------------E
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVK----------------------------------------I 217 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~----------------------------------------i 217 (285)
.+..++.|..+.|++|+++.+.+.++.+. +..+.+.. +
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c 184 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC 184 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence 56678899999999999999887776431 00111100 0
Q ss_pred -----cChHHHHhcCCcccCeEEEEeCCeEEEEecCCc
Q psy159 218 -----QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENK 250 (285)
Q Consensus 218 -----~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g~~~ 250 (285)
.+..+++++||++.|+++ +.+|+.+ .|...
T Consensus 185 ~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~--~G~~~ 219 (232)
T PRK10877 185 DVDIADHYALGVQFGVQGTPAIV-LSNGTLV--PGYQG 219 (232)
T ss_pred cchHHHhHHHHHHcCCccccEEE-EcCCeEe--eCCCC
Confidence 345578899999999998 6788744 77664
No 308
>PLN02412 probable glutathione peroxidase
Probab=97.16 E-value=0.0008 Score=52.96 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=34.8
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
+++++|.||++||+.|+...|.++++.+++++.++.+.-+
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv 68 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAF 68 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEe
Confidence 5889999999999999999999999999998655666665
No 309
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.15 E-value=0.0034 Score=47.50 Aligned_cols=41 Identities=17% Similarity=0.428 Sum_probs=33.4
Q ss_pred hCCeEEEEEE-CCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 177 ETQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 177 ~~~~~~v~F~-a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
.+++++|.|| +.||+.|....+.+.++..+++..++.+..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~i 62 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGV 62 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4678899999 7899999999999999998885435666666
No 310
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.14 E-value=0.0022 Score=41.02 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=34.9
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-Ch----hHHhhhCCCCCCeEEE
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DP----RYARKWGVTKLPAVVY 131 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~----~l~~~~~i~~~Ptl~~ 131 (285)
++.|..+||++|++....+++.. .......++ ++ .+.+..|..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~-----i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKG-----IPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT-----BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcC-----CeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 47899999999999998886542 224445554 32 3334459999999875
No 311
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.12 E-value=0.0073 Score=43.44 Aligned_cols=88 Identities=18% Similarity=0.264 Sum_probs=62.5
Q ss_pred ccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcChHHHHhcCCcccCeEEEEeC------
Q psy159 166 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN------ 239 (285)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~v~~~Ptl~~~~~------ 239 (285)
.+.+++++++..++.++|-|+...-+ .....|.++|..++. +..|+......+...+++ .|++++|+.
T Consensus 6 ~s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~~~~~~~~~~~--~~~ivl~~p~~~~~k 79 (104)
T cd03069 6 RTEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTSDKQLLEKYGY--GEGVVLFRPPRLSNK 79 (104)
T ss_pred CCHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEChHHHHHhcCC--CCceEEEechhhhcc
Confidence 35667888887777777777765332 467788899999975 689988877888889988 688888832
Q ss_pred --CeEEEEecCCccchhHHHHHhh
Q psy159 240 --GNPLIFEGENKILKGTYIGTYI 261 (285)
Q Consensus 240 --g~~~~y~g~~~~e~~~~~~~~~ 261 (285)
...+.|.|+.+ ...+..|+.
T Consensus 80 ~de~~~~y~g~~~--~~~l~~fi~ 101 (104)
T cd03069 80 FEDSSVKFDGDLD--SSKIKKFIR 101 (104)
T ss_pred cCcccccccCcCC--HHHHHHHHH
Confidence 23457999875 233455543
No 312
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.10 E-value=0.0019 Score=44.04 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=38.3
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cC-----hHHHHhcCCcccCeEEEEeCCeE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QD-----PQLAKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~-----~~~~~~~~v~~~Ptl~~~~~g~~ 242 (285)
++.|+++||++|+.+.+.++++...+ .+..+ .. ..+.+..+..++|.+ |-+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKP-----AVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCc-----EEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 47789999999999999999987643 34444 22 134455688899997 446754
No 313
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.06 E-value=0.0093 Score=47.78 Aligned_cols=66 Identities=14% Similarity=0.257 Sum_probs=48.7
Q ss_pred CCeEEEEEE-CCCChhhHHHHHHHHHHHhhcCcCCeEEEEE----------------------------cChHHHHhcCC
Q psy159 178 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI----------------------------QDPQLAKRYSI 228 (285)
Q Consensus 178 ~~~~~v~F~-a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----------------------------~~~~~~~~~~v 228 (285)
++.++|.|| +.||+.|....+.+.++..++...++.+.-+ .+..+++.|++
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 567889999 8999999999999999988886433443333 23467888888
Q ss_pred ----ccc--CeEEEEe-CCeEE
Q psy159 229 ----KTF--PALVYFR-NGNPL 243 (285)
Q Consensus 229 ----~~~--Ptl~~~~-~g~~~ 243 (285)
.++ |+.+++. +|+..
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~ 132 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQ 132 (187)
T ss_pred CcccCCceeeEEEEECCCCEEE
Confidence 356 8888885 77643
No 314
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.06 E-value=0.00063 Score=46.46 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=37.0
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---C-h----hHHhhhCCCCCCeEEEEcccc
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---D-P----RYARKWGVTKLPAVVYFRHRF 136 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~-~----~l~~~~~i~~~Ptl~~~~~g~ 136 (285)
++.|+++||++|+.+...++++... ..+..++ + . .+.+..|..++|++ |.+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-----PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-----cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 5789999999999999999887542 3444443 2 2 23455688899986 44553
No 315
>PRK15000 peroxidase; Provisional
Probab=97.05 E-value=0.0039 Score=50.55 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=31.7
Q ss_pred cCCcEEEEEeCC-CChhHHHHHHHHHhHHhhcCCCCcEEE
Q psy159 72 ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFV 110 (285)
Q Consensus 72 ~~~~~lv~Fya~-~c~~C~~~~~~~~~~a~~~~~~~v~~~ 110 (285)
.++.+++.||+. ||+.|..-.+.+.+..++++..++.++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vi 72 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVV 72 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 457888999995 999999999999999888865555554
No 316
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.03 E-value=0.012 Score=42.16 Aligned_cols=90 Identities=12% Similarity=0.242 Sum_probs=63.2
Q ss_pred ccHHHHHHHHH-hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcChHHHHhcCCcccCeEEEEeC-C-eE
Q psy159 166 ITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN-G-NP 242 (285)
Q Consensus 166 ~~~~~~~~~~~-~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~v~~~Ptl~~~~~-g-~~ 242 (285)
.+.++++.++. ++..++|-|+...-+ .....|.++|..++. +..|+...+..+...+++. .|+++++++ . ..
T Consensus 6 ~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~~~~~~~~~~~~-~~~i~l~~~~~e~~ 80 (102)
T cd03066 6 NSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFATFDSKVAKKLGLK-MNEVDFYEPFMEEP 80 (102)
T ss_pred CCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEECcHHHHHHcCCC-CCcEEEeCCCCCCC
Confidence 36677889998 777777777765333 456778999999975 6899888888888888775 699999975 3 34
Q ss_pred EEE-ecCCccchhHHHHHhhhc
Q psy159 243 LIF-EGENKILKGTYIGTYIST 263 (285)
Q Consensus 243 ~~y-~g~~~~e~~~~~~~~~~~ 263 (285)
+.| .|..+. .. |..|++.
T Consensus 81 ~~y~~g~~~~--~~-l~~fi~~ 99 (102)
T cd03066 81 VTIPDKPYSE--EE-LVDFVEE 99 (102)
T ss_pred cccCCCCCCH--HH-HHHHHHH
Confidence 579 665542 33 4455543
No 317
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.97 E-value=0.0026 Score=44.03 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=47.1
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-C----hhHHhhhCC--CCCCeEEEEccccceeecCCCchhHH
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D----PRYARKWGV--TKLPAVVYFRHRFPSIYRGDLSEEEE 149 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~----~~l~~~~~i--~~~Ptl~~~~~g~~~~y~g~~~~~~~ 149 (285)
++.|..+||++|.++...+.++.....+..+..+.++ + ..+....|- ...|++++ +|+. -|+. ++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~---igG~---~d 73 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH---VGGC---TD 73 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE---ecCH---HH
Confidence 6789999999999999999887544322223344443 1 235555563 78999843 4533 3433 36
Q ss_pred HHHHHhhhc
Q psy159 150 VLQWLITQK 158 (285)
Q Consensus 150 l~~fi~~~~ 158 (285)
|.+++.++.
T Consensus 74 l~~~~~~~~ 82 (86)
T TIGR02183 74 FEQLVKENF 82 (86)
T ss_pred HHHHHHhcc
Confidence 888877654
No 318
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.95 E-value=0.0032 Score=41.52 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=32.9
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cChHHHH----hcCCcccCeEEE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAK----RYSIKTFPALVY 236 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~----~~~v~~~Ptl~~ 236 (285)
++.|+++||++|..+...+.+..- ......+ ......+ ..++.++|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i-----~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGI-----PFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCC-----CeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 467899999999999888876421 2333334 2333333 236789999876
No 319
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.93 E-value=0.0026 Score=48.48 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=31.6
Q ss_pred CCeEEEEEECCC-ChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 178 TQYLAVYFYKLN-CNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 178 ~~~~~v~F~a~~-c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
+++++|.||+.| |++|+...+.+.++.+++.+ +.+..+
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~--~~vi~I 64 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN--TVVLTI 64 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC--CEEEEE
Confidence 578999999998 69999999999999998863 555554
No 320
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.93 E-value=0.012 Score=43.23 Aligned_cols=75 Identities=15% Similarity=0.241 Sum_probs=50.1
Q ss_pred HHHhCCeEEEEEECC----CChhhHHHH--HHHHHHHhhcCcCCeEEEEE-----cChHHHHhcCCcccCeEEEE--eCC
Q psy159 174 MVEETQYLAVYFYKL----NCNICDQIL--EGLEKVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALVYF--RNG 240 (285)
Q Consensus 174 ~~~~~~~~~v~F~a~----~c~~c~~~~--~~~~~la~~~~~~~i~~~~i-----~~~~~~~~~~v~~~Ptl~~~--~~g 240 (285)
..++.+.++|++|++ ||..|+... |.+.+. +.. +..+... +...++..++++++|+++++ +++
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---ln~-~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~ 88 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---INT-RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDN 88 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---HHc-CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCC
Confidence 345688999999999 888887643 333333 332 3333333 44668999999999999998 244
Q ss_pred eE--E-EEecCCccc
Q psy159 241 NP--L-IFEGENKIL 252 (285)
Q Consensus 241 ~~--~-~y~g~~~~e 252 (285)
+. + +..|..+.+
T Consensus 89 ~~~vv~~i~G~~~~~ 103 (116)
T cd02991 89 RMTIVGRLEGLIQPE 103 (116)
T ss_pred ceEEEEEEeCCCCHH
Confidence 32 2 778988644
No 321
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.90 E-value=0.0014 Score=49.82 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=29.3
Q ss_pred cCCcEEEEEeCCCChh-HHHHHHHHHhHHhhcCC
Q psy159 72 ENEFVTVFFYETDHKD-SVKVLERLEKIDGETDN 104 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~-C~~~~~~~~~~a~~~~~ 104 (285)
.++.++|.||++||+. |....+.+.++.++++.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~ 54 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA 54 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH
Confidence 5678999999999997 99999999999888844
No 322
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.87 E-value=0.015 Score=42.99 Aligned_cols=77 Identities=13% Similarity=0.276 Sum_probs=57.9
Q ss_pred cHHHHHHHHHh--CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhcCCcccC-eEEEEeCC
Q psy159 167 TRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFP-ALVYFRNG 240 (285)
Q Consensus 167 ~~~~~~~~~~~--~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~v~~~P-tl~~~~~g 240 (285)
+.-..++.+.+ ++.+++-|..+|-+.|.++...+.+++++.++. ..++.+ +-+++.+.|.+. -| |+++|-++
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn 84 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN 84 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence 45567776543 788999999999999999999999999999863 455555 567778889998 67 57777677
Q ss_pred eEEEE
Q psy159 241 NPLIF 245 (285)
Q Consensus 241 ~~~~y 245 (285)
+...-
T Consensus 85 khm~v 89 (133)
T PF02966_consen 85 KHMMV 89 (133)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 76533
No 323
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.85 E-value=0.012 Score=42.88 Aligned_cols=85 Identities=14% Similarity=0.073 Sum_probs=61.9
Q ss_pred cccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhh---cCcCCeEEEEE---cChHHHHhcCCcc--cCeE
Q psy159 163 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDE---CDIYGIHMVKI---QDPQLAKRYSIKT--FPAL 234 (285)
Q Consensus 163 v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~---~~~~~i~~~~i---~~~~~~~~~~v~~--~Ptl 234 (285)
|+.++.++.+.+..+..+..+.|+. -..-..+...++++|++ +++ ++.|+.+ ......+.||++. +|.+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHD--KDDLESLKEFKQAVARQLISEKG-AINFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 3567788888888877776666672 23346788999999999 997 6889888 3344888999987 8999
Q ss_pred EEEeCCeEEEE---ecCCc
Q psy159 235 VYFRNGNPLIF---EGENK 250 (285)
Q Consensus 235 ~~~~~g~~~~y---~g~~~ 250 (285)
++.......+| .+..+
T Consensus 78 ~i~~~~~~~Ky~~~~~~~t 96 (111)
T cd03072 78 AIDSFRHMYLFPDFEDVYV 96 (111)
T ss_pred EEEcchhcCcCCCCccccC
Confidence 99865433344 35554
No 324
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.77 E-value=0.0046 Score=42.80 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=38.7
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEc-----ChHHHHhcCC--cccCeEEEEeCCe
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-----DPQLAKRYSI--KTFPALVYFRNGN 241 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-----~~~~~~~~~v--~~~Ptl~~~~~g~ 241 (285)
++.|..+||++|.++...++++..+..+..+....+. ...+.+..+- .++|.+++ +|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~ 66 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEK 66 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCE
Confidence 5678899999999999999998765432123333342 2245555553 78999854 665
No 325
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.71 E-value=0.0064 Score=41.30 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=37.9
Q ss_pred eEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-c---ChHHHHhcCCcccCeEEEEeCCeE
Q psy159 180 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-Q---DPQLAKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 180 ~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~---~~~~~~~~~v~~~Ptl~~~~~g~~ 242 (285)
.-++.|..+||++|++....|++..-.| ....+ . ...+.+..+..++|.+.+ +|+.
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y-----~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 67 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDF-----EEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL 67 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCc-----EEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE
Confidence 3467889999999999999988654332 23333 1 234555568889999854 6753
No 326
>PRK13189 peroxiredoxin; Provisional
Probab=96.70 E-value=0.011 Score=48.83 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=28.6
Q ss_pred CC-cEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEE
Q psy159 73 NE-FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV 110 (285)
Q Consensus 73 ~~-~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~ 110 (285)
++ .+|+.|++.||+.|....+.+.+++++++..++.++
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~Vi 73 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELI 73 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 44 344567899999999999999999888854455444
No 327
>PRK15000 peroxidase; Provisional
Probab=96.69 E-value=0.019 Score=46.54 Aligned_cols=66 Identities=18% Similarity=0.353 Sum_probs=48.1
Q ss_pred CCeEEEEEECC-CChhhHHHHHHHHHHHhhcCcCCeEEEEE-------------------------------cChHHHHh
Q psy159 178 TQYLAVYFYKL-NCNICDQILEGLEKVDDECDIYGIHMVKI-------------------------------QDPQLAKR 225 (285)
Q Consensus 178 ~~~~~v~F~a~-~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------------------------------~~~~~~~~ 225 (285)
++.++|.||+. ||+.|....+.|.++..+++..++.+..+ ....+++.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ 113 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA 113 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence 57899999995 99999999999999988887534555444 12245666
Q ss_pred cCCc------ccCeEEEEe-CCeEE
Q psy159 226 YSIK------TFPALVYFR-NGNPL 243 (285)
Q Consensus 226 ~~v~------~~Ptl~~~~-~g~~~ 243 (285)
|++. ..|+.+++. +|+..
T Consensus 114 ygv~~~~~g~~~r~tfiID~~G~I~ 138 (200)
T PRK15000 114 YGIEHPDEGVALRGSFLIDANGIVR 138 (200)
T ss_pred cCCccCCCCcEEeEEEEECCCCEEE
Confidence 7776 578888885 67644
No 328
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.67 E-value=0.0083 Score=40.75 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=43.4
Q ss_pred CcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-C---hhHHhhhCCCCCCeEEEEccccceeecCCCchhHH
Q psy159 74 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D---PRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEE 149 (285)
Q Consensus 74 ~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~---~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~ 149 (285)
+.-++.|..+||++|.+....+.+. +.....+.++ + ..+.+..|...+|++.+ +|+. -|+. ++
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~---igG~---~~ 73 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL---IGGS---DE 73 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE---EcCH---HH
Confidence 3446899999999999999888754 2223444444 2 34445568899999854 5532 2332 25
Q ss_pred HHHHH
Q psy159 150 VLQWL 154 (285)
Q Consensus 150 l~~fi 154 (285)
|.+|+
T Consensus 74 l~~~l 78 (79)
T TIGR02190 74 LEAYL 78 (79)
T ss_pred HHHHh
Confidence 66665
No 329
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.67 E-value=0.013 Score=49.21 Aligned_cols=81 Identities=7% Similarity=0.129 Sum_probs=52.3
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEE-----------------------------------------
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK----------------------------------------- 111 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~----------------------------------------- 111 (285)
.+..++.|..+.|++|+++.+.+.++.+. ++..+..+-
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~ 195 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPA 195 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCccc
Confidence 35688999999999999998887653321 100010000
Q ss_pred -eC---------ChhHHhhhCCCCCCeEEEEcc-ccceeecCCCchhHHHHHHHh
Q psy159 112 -MA---------DPRYARKWGVTKLPAVVYFRH-RFPSIYRGDLSEEEEVLQWLI 155 (285)
Q Consensus 112 -~~---------~~~l~~~~~i~~~Ptl~~~~~-g~~~~y~g~~~~~~~l~~fi~ 155 (285)
.. +..+++++||++.|++++-.. |......|....+ +|.+.+.
T Consensus 196 ~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~-~L~~~l~ 249 (251)
T PRK11657 196 SIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPA-QLAEIMG 249 (251)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHH-HHHHHhC
Confidence 00 233667799999999988763 6555677877664 6776653
No 330
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.63 E-value=0.0039 Score=49.84 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=31.5
Q ss_pred CCe-EEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 178 TQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 178 ~~~-~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
+++ +++.++|.||++|+...|.++++.+++++.++.+.-+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~v 80 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAF 80 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEE
Confidence 454 4456699999999999999999999998645666555
No 331
>PHA03050 glutaredoxin; Provisional
Probab=96.62 E-value=0.013 Score=42.45 Aligned_cols=66 Identities=17% Similarity=0.373 Sum_probs=43.4
Q ss_pred HHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEc----C----hHHHHhcCCcccCeEEEEeCCeE
Q psy159 171 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ----D----PQLAKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 171 ~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~----~----~~~~~~~~v~~~Ptl~~~~~g~~ 242 (285)
.++.+++++ ++.|..+||++|+++...|.++..... .+....++ . ..+.+.-|-+++|++++ +|+.
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~ 79 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG--AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTS 79 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEE
Confidence 344454444 567899999999999999988865432 23444442 2 23555567789999844 6653
No 332
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.58 E-value=0.011 Score=38.64 Aligned_cols=54 Identities=26% Similarity=0.377 Sum_probs=35.5
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cCh----HHHHhcCCcccCeEEEEeCCeE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDP----QLAKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~----~~~~~~~v~~~Ptl~~~~~g~~ 242 (285)
++.|.++||++|+.+...+.+..- .+....+ .++ .+.+..+..++|++. .+|+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i-----~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ 60 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGI-----EFEEIDILEDGELREELKELSGWPTVPQIF--INGEF 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCC-----cEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 467889999999999999887752 2333444 233 234445667888774 46653
No 333
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.57 E-value=0.0083 Score=39.27 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=34.8
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-Ch----hHHhhhCCCCCCeEEEEcccc
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DP----RYARKWGVTKLPAVVYFRHRF 136 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~----~l~~~~~i~~~Ptl~~~~~g~ 136 (285)
++.|+++||++|+++...+.+.. ..+....++ +. .+.+..+...+|++. .+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIF--INGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 57899999999999999888763 223344444 23 233445777888774 3553
No 334
>PHA03050 glutaredoxin; Provisional
Probab=96.54 E-value=0.015 Score=42.06 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=40.0
Q ss_pred HHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCC----h----hHHhhhCCCCCCeEEE
Q psy159 66 LDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD----P----RYARKWGVTKLPAVVY 131 (285)
Q Consensus 66 f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~----~----~l~~~~~i~~~Ptl~~ 131 (285)
.++++++++ ++.|..+||++|++....|.+..-.. ..+..+.++. . .+.+.-|-...|++++
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~--~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR--GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc--CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 344555543 68999999999999998887763211 1245555552 2 2444467788999844
No 335
>KOG3414|consensus
Probab=96.52 E-value=0.042 Score=40.16 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=57.2
Q ss_pred hhHHHHHHhc--CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCC-cEEEEeC-ChhHHhhhCCCCCCeEEEEccccc
Q psy159 63 RRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMD-ITFVKMA-DPRYARKWGVTKLPAVVYFRHRFP 137 (285)
Q Consensus 63 ~~~f~~~~~~--~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~-v~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~ 137 (285)
....+..+.+ .+.+++-|-..|-+.|.++...+..++..+.+.- +-++.++ -+++.+-|++...|++.+|-+++.
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 3455665533 4667888999999999999999999999885542 3344455 567788899999999999877654
No 336
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.52 E-value=0.017 Score=46.96 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=28.5
Q ss_pred EEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEE
Q psy159 76 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV 110 (285)
Q Consensus 76 ~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~ 110 (285)
+|+.|++.||+.|....+.+.++.++++..++.++
T Consensus 29 vlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vi 63 (203)
T cd03016 29 ILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLI 63 (203)
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEE
Confidence 45578899999999999999999988855555544
No 337
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.50 E-value=0.012 Score=47.48 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=21.4
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHH
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEK 202 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~ 202 (285)
.+..++.|..+.|++|+++.+.+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 5678899999999999999887664
No 338
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.50 E-value=0.0056 Score=46.45 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=34.5
Q ss_pred hCCeEEEEEECCCChh-hHHHHHHHHHHHhhcCcC---CeEEEEE
Q psy159 177 ETQYLAVYFYKLNCNI-CDQILEGLEKVDDECDIY---GIHMVKI 217 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~-c~~~~~~~~~la~~~~~~---~i~~~~i 217 (285)
.++.++|.||++||+. |....+.++++.++++.. ++.+..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~v 65 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFI 65 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEE
Confidence 4678999999999997 999999999999988753 2777666
No 339
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.49 E-value=0.012 Score=49.56 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=28.8
Q ss_pred CCcEEEEEe-CCCChhHHHHHHHHHhHHhhcCCCCcEEE
Q psy159 73 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFV 110 (285)
Q Consensus 73 ~~~~lv~Fy-a~~c~~C~~~~~~~~~~a~~~~~~~v~~~ 110 (285)
++.+++.|| +.||+.|..-.+.+.++.++++..++.++
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~Vi 136 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVL 136 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 456667777 89999999999999988888854444433
No 340
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=96.48 E-value=0.07 Score=38.54 Aligned_cols=94 Identities=9% Similarity=0.211 Sum_probs=66.8
Q ss_pred eec-ChhHHHHHHhcC-CcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEccc-
Q psy159 59 EEV-NRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHR- 135 (285)
Q Consensus 59 ~~l-~~~~f~~~~~~~-~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~~g- 135 (285)
.++ +.++++.++... +..+|-|+..--+ .....|.++|..++.. +.|+...+..+.+++++. .|.+++|++.
T Consensus 3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd-~~F~~t~~~~~~~~~~~~-~~~vvl~rp~~ 77 (107)
T cd03068 3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRED-YKFHHTFDSEIFKSLKVS-PGQLVVFQPEK 77 (107)
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccC-CEEEEEChHHHHHhcCCC-CCceEEECcHH
Confidence 344 567788887766 7777777766433 3567888999888543 889888888999999886 4667777542
Q ss_pred -------cceeecCC-CchhHHHHHHHhhh
Q psy159 136 -------FPSIYRGD-LSEEEEVLQWLITQ 157 (285)
Q Consensus 136 -------~~~~y~g~-~~~~~~l~~fi~~~ 157 (285)
....|.|. ...+++|..|+.++
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 22568887 56653599999753
No 341
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.43 E-value=0.03 Score=38.21 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=50.8
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-ChhHHhhhCCCCCCeEEEEcccc---ceeecCCCchhHHHHH
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVTKLPAVVYFRHRF---PSIYRGDLSEEEEVLQ 152 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~---~~~y~g~~~~~~~l~~ 152 (285)
+++|..+.|+-|..+...+++++.... ..+..+.++ ++.+..+|+. ..|.+.+-..+. .....+..+.+ .+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~-~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEE-QLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HH-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHH-HHHH
Confidence 688999999999999999988754432 235555555 7889999995 799876633111 23445556654 7888
Q ss_pred HHh
Q psy159 153 WLI 155 (285)
Q Consensus 153 fi~ 155 (285)
|++
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 764
No 342
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.38 E-value=0.027 Score=46.18 Aligned_cols=38 Identities=5% Similarity=-0.011 Sum_probs=29.2
Q ss_pred CCcEE-EEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEE
Q psy159 73 NEFVT-VFFYETDHKDSVKVLERLEKIDGETDNMDITFV 110 (285)
Q Consensus 73 ~~~~l-v~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~ 110 (285)
++.++ +.|.++||+.|....+.+.+++.+++..++.++
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~Vi 71 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELI 71 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEE
Confidence 44444 477899999999999999999988855555554
No 343
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.37 E-value=0.036 Score=45.04 Aligned_cols=65 Identities=14% Similarity=0.262 Sum_probs=43.6
Q ss_pred CCeEEE-EEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE------------------------------cChHHHHhc
Q psy159 178 TQYLAV-YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------------QDPQLAKRY 226 (285)
Q Consensus 178 ~~~~~v-~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------------~~~~~~~~~ 226 (285)
++.++| .|++.||+.|....+.+.++..+++..++.+..+ ....+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 454544 5789999999998888888777765322333222 234577778
Q ss_pred CCc------ccCeEEEEe-CCeE
Q psy159 227 SIK------TFPALVYFR-NGNP 242 (285)
Q Consensus 227 ~v~------~~Ptl~~~~-~g~~ 242 (285)
++. .+|+.+++. +|+.
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I 129 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIV 129 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEE
Confidence 874 479988885 6654
No 344
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.36 E-value=0.012 Score=39.13 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=33.8
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-Ch----hHHhhhCCCCCCeEEE
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DP----RYARKWGVTKLPAVVY 131 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~----~l~~~~~i~~~Ptl~~ 131 (285)
++.|+.+||++|++....+++. +..+....++ ++ .+.+..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5789999999999998888764 2224444444 23 3445557778898743
No 345
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.35 E-value=0.015 Score=47.78 Aligned_cols=39 Identities=3% Similarity=0.043 Sum_probs=30.1
Q ss_pred CCc-EEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEE
Q psy159 73 NEF-VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK 111 (285)
Q Consensus 73 ~~~-~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~ 111 (285)
++. +|+.|++.||+.|..-.+.+.++..++...++.++.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vig 67 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIG 67 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 344 467889999999999999999998888555555543
No 346
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.27 E-value=0.031 Score=45.27 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=30.7
Q ss_pred cCCcEEEEEeC-CCChhHHHHHHHHHhHHhhcCCCCcEEEE
Q psy159 72 ENEFVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVK 111 (285)
Q Consensus 72 ~~~~~lv~Fya-~~c~~C~~~~~~~~~~a~~~~~~~v~~~~ 111 (285)
.++.+++.||+ .||.+|....+.+.++++++...++.++.
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~ 75 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLA 75 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 35677888885 78999998889999998888655555553
No 347
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.26 E-value=0.0082 Score=47.86 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=32.6
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
+++++|.|+|.||+.|++ .+.++++.++|++.++.+.-+
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~ 63 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGF 63 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEe
Confidence 689999999999999975 789999999998645666655
No 348
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.26 E-value=0.019 Score=38.10 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=33.2
Q ss_pred EEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-ChhHHhh---hCCCCCCeEEE
Q psy159 78 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARK---WGVTKLPAVVY 131 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~~l~~~---~~i~~~Ptl~~ 131 (285)
..|..++|++|++....+++. +..+....++ ++..... .|..+.|++.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 578889999999998888754 2224445554 4444443 47788999755
No 349
>KOG3170|consensus
Probab=96.25 E-value=0.046 Score=43.36 Aligned_cols=102 Identities=17% Similarity=0.266 Sum_probs=71.1
Q ss_pred ccccccccHHHHHHHH--HhCCe-EEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcChHHHHhcCCcccCeEEE
Q psy159 160 EDRIELITRVMLETMV--EETQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 160 ~~~v~~~~~~~~~~~~--~~~~~-~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~v~~~Ptl~~ 236 (285)
-+.|..+++.++-.-+ ++... |+|..|..--+.|.-+...++.||.+|. .++|+++-...-...|.=...|||++
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp--~iKFVki~at~cIpNYPe~nlPTl~V 167 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP--QIKFVKIPATTCIPNYPESNLPTLLV 167 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC--cceEEecccccccCCCcccCCCeEEE
Confidence 4566688888875533 23444 5667888888999999999999999998 49999994333445677778999999
Q ss_pred EeCCeEE-------EEecCCccchhHHHHHhhhcCC
Q psy159 237 FRNGNPL-------IFEGENKILKGTYIGTYISTKA 265 (285)
Q Consensus 237 ~~~g~~~-------~y~g~~~~e~~~~~~~~~~~~~ 265 (285)
|.+|... .+-|....-++ +.|++-+..
T Consensus 168 Y~~G~lk~q~igll~lgG~n~t~ed--~e~~L~qag 201 (240)
T KOG3170|consen 168 YHHGALKKQMIGLLELGGMNLTMED--VEDFLVQAG 201 (240)
T ss_pred eecchHHhheehhhhhcCCcCCHHH--HHHHHHhcc
Confidence 9998532 34444443332 667765444
No 350
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.24 E-value=0.024 Score=39.37 Aligned_cols=55 Identities=25% Similarity=0.316 Sum_probs=40.8
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-----cC------------------------------hHHHHhc
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-----QD------------------------------PQLAKRY 226 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-----~~------------------------------~~~~~~~ 226 (285)
+..|+++.|++|..+.+.++++.....+ ++.+... .. .......
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL 79 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 3678999999999999999998755444 4555544 11 2356778
Q ss_pred CCcccCeEEEE
Q psy159 227 SIKTFPALVYF 237 (285)
Q Consensus 227 ~v~~~Ptl~~~ 237 (285)
|+.+.|++++-
T Consensus 80 g~~g~Pt~v~~ 90 (98)
T cd02972 80 GVTGTPTFVVN 90 (98)
T ss_pred CCCCCCEEEEC
Confidence 99999999884
No 351
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.21 E-value=0.018 Score=38.91 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=33.7
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-Chh----HHhhhCCCCCCeEEE
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPR----YARKWGVTKLPAVVY 131 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~~----l~~~~~i~~~Ptl~~ 131 (285)
++.|..+||++|.+....+++.. .......++ ++. +.+..|...+|++.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~-----i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG-----VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC-----CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 36788999999999998887652 234555555 333 333457788998743
No 352
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.13 E-value=0.023 Score=40.43 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=34.5
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-C---hh----HHhhhCCCCCCeEEEEccc
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D---PR----YARKWGVTKLPAVVYFRHR 135 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~---~~----l~~~~~i~~~Ptl~~~~~g 135 (285)
++.|..+||++|.++...+.+.. .....+.+| + .+ +.+..|-..+|+++ -+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g 69 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG-----VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGG 69 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECC
Confidence 67899999999999998777652 224555555 2 11 23334677899873 455
No 353
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.12 E-value=0.018 Score=38.33 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=35.5
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cCh----HHHHhcCCcccCeEEEEeCCe
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDP----QLAKRYSIKTFPALVYFRNGN 241 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~----~~~~~~~v~~~Ptl~~~~~g~ 241 (285)
++.|..++|++|+++...+++..-. .....+ ..+ .+.+..+-..+|++++ +|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~-----~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLP-----YVEINIDIFPERKAELEERTGSSVVPQIFF--NEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCc-----eEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 4678889999999999988875322 333344 223 3555556678898844 564
No 354
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.11 E-value=0.021 Score=37.97 Aligned_cols=49 Identities=20% Similarity=0.387 Sum_probs=32.5
Q ss_pred EEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cChHHHHh---cCCcccCeEEE
Q psy159 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKR---YSIKTFPALVY 236 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~---~~v~~~Ptl~~ 236 (285)
..|..++|++|++....+++..-. .....+ .++..... .|..++|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~i~-----~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHGIA-----FEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCc-----eEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 467889999999999888765322 334444 34433333 37788999755
No 355
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.09 E-value=0.086 Score=38.36 Aligned_cols=81 Identities=12% Similarity=0.073 Sum_probs=53.5
Q ss_pred cccHHHHHHHHHhCCeEEEEEE----CCCChhhHHHHHHHHHHHhhcC-cCCeEEEEE---cChHHHHhcCCcc----cC
Q psy159 165 LITRVMLETMVEETQYLAVYFY----KLNCNICDQILEGLEKVDDECD-IYGIHMVKI---QDPQLAKRYSIKT----FP 232 (285)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~F~----a~~c~~c~~~~~~~~~la~~~~-~~~i~~~~i---~~~~~~~~~~v~~----~P 232 (285)
.++.++..... ..+.++.|+ +..-..-..+...+.++|++++ + .+.|+.+ +...+.+.||+++ +|
T Consensus 3 ~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 3 HRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDFSHELEEFGLDFSGGEKP 79 (111)
T ss_pred eeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence 34555655553 233444443 2333445678899999999999 6 6889888 3445888999984 99
Q ss_pred eEEEEeCCeEEEE--ecCC
Q psy159 233 ALVYFRNGNPLIF--EGEN 249 (285)
Q Consensus 233 tl~~~~~g~~~~y--~g~~ 249 (285)
++++...+. .+| .+..
T Consensus 80 ~~~i~~~~~-~KY~~~~~~ 97 (111)
T cd03073 80 VVAIRTAKG-KKYVMEEEF 97 (111)
T ss_pred EEEEEeCCC-CccCCCccc
Confidence 999986433 345 4444
No 356
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.08 E-value=0.027 Score=37.54 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=32.7
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-ChhH----HhhhCCC-CCCeEE
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRY----ARKWGVT-KLPAVV 130 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~~l----~~~~~i~-~~Ptl~ 130 (285)
++.|..+||++|.+....|.+. +..+....++ +++. .+..+.. ++|+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 5789999999999998888764 2234455554 3333 2335666 899774
No 357
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.08 E-value=0.02 Score=39.83 Aligned_cols=56 Identities=27% Similarity=0.238 Sum_probs=39.4
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-----------------------------------ChhHHhhh
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----------------------------------DPRYARKW 121 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-----------------------------------~~~l~~~~ 121 (285)
++.|+++.|++|..+.+.+.++.....+ ++.+.... +...+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL 79 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 3689999999999999999998644322 23333211 12356678
Q ss_pred CCCCCCeEEEEc
Q psy159 122 GVTKLPAVVYFR 133 (285)
Q Consensus 122 ~i~~~Ptl~~~~ 133 (285)
|+.+.|++++..
T Consensus 80 g~~g~Pt~v~~~ 91 (98)
T cd02972 80 GVTGTPTFVVNG 91 (98)
T ss_pred CCCCCCEEEECC
Confidence 999999988754
No 358
>KOG2640|consensus
Probab=96.06 E-value=0.0037 Score=52.84 Aligned_cols=118 Identities=15% Similarity=0.205 Sum_probs=83.3
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC----ChhHHhhhCCCCCCeEEEEccccceeecCCCchhH
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEE 148 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~ 148 (285)
..++-..||+.||+..+...|++.-....+.. +....++ .+.+..++++.+.|++.+....-+..|.|.+.-.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~--i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l~- 152 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS--IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDLA- 152 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc--cccccHHHHhhcccchhccccccCCcceeeccccchhhcccccHH-
Confidence 46788999999999998888888766655531 3333343 5678899999999999998777778899999886
Q ss_pred HHHHHHhhhccccccccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHH
Q psy159 149 EVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLE 201 (285)
Q Consensus 149 ~l~~fi~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~ 201 (285)
+|++|..+.++-.+...+ ..-.......+|.+||++-....|...
T Consensus 153 sLv~fy~~i~~~~v~ie~--------~d~~~~~~~~ry~~~~~~t~l~~p~~~ 197 (319)
T KOG2640|consen 153 SLVNFYTEITPMSVLIEI--------LDCTSCLEPVRYVPEGGPTILLAPDGN 197 (319)
T ss_pred HHHHHHHhhccchhcccc--------cCcccceeeeEeccccCcccccCcCCC
Confidence 999998877753321111 111124567789999986554554433
No 359
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.98 E-value=0.013 Score=44.79 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=27.0
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGETDN 104 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~ 104 (285)
.+..++.|++++|++|.++.|.+.++.....+
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 46788999999999999999999987766543
No 360
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=95.97 E-value=0.097 Score=44.16 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=46.4
Q ss_pred CCeEEEEEE-CCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-------------------------------cChHHHHh
Q psy159 178 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI-------------------------------QDPQLAKR 225 (285)
Q Consensus 178 ~~~~~v~F~-a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------------------------------~~~~~~~~ 225 (285)
++.+++.|| +.||+.|....+.|.++..+++..++.+.-+ .+..+++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 456777777 7999999998888888888775323333333 23457788
Q ss_pred cCCc-----ccCeEEEEe-CCeEE
Q psy159 226 YSIK-----TFPALVYFR-NGNPL 243 (285)
Q Consensus 226 ~~v~-----~~Ptl~~~~-~g~~~ 243 (285)
||+. ..|+.+++. +|+..
T Consensus 178 yGv~~~~g~a~R~tFIID~dG~I~ 201 (261)
T PTZ00137 178 FGLLRDEGFSHRASVLVDKAGVVK 201 (261)
T ss_pred cCCCCcCCceecEEEEECCCCEEE
Confidence 8874 479888885 77644
No 361
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.89 E-value=0.047 Score=38.70 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=35.4
Q ss_pred HHHHHHhcCCcEEEEEe-----CCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-Ch----hHHhhhCCCCCCeEEE
Q psy159 65 MLDKLLEENEFVTVFFY-----ETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DP----RYARKWGVTKLPAVVY 131 (285)
Q Consensus 65 ~f~~~~~~~~~~lv~Fy-----a~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~----~l~~~~~i~~~Ptl~~ 131 (285)
-.++++.++ ++ |.|. +|||++|.+....+.+..- ....+.++ ++ .+.+..|-..+|++++
T Consensus 4 ~v~~~i~~~-~V-vvf~kg~~~~~~Cp~C~~ak~lL~~~~i-----~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 4 RIKEQIKEN-PV-VLYMKGTPQFPQCGFSARAVQILKACGV-----PFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred HHHHHhccC-CE-EEEEccCCCCCCCchHHHHHHHHHHcCC-----CEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 344555554 34 3443 3899999999988877522 23333443 22 3444567778898743
No 362
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.87 E-value=0.044 Score=36.26 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=34.9
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cC---hHHHHhcCCcccCeEEEEeCCeE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QD---PQLAKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~---~~~~~~~~v~~~Ptl~~~~~g~~ 242 (285)
++.|..+||+.|.+....+++.... .....+ .+ ..+....+..++|.+. -+|+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i~-----~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~ 60 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGIS-----YEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGEL 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCC-----cEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEE
Confidence 5678899999999999888865322 223333 12 2233445788999974 46753
No 363
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.85 E-value=0.011 Score=40.02 Aligned_cols=52 Identities=17% Similarity=0.345 Sum_probs=35.0
Q ss_pred EEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cChH----HHHhcCCcccCeEEEEeCCe
Q psy159 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQ----LAKRYSIKTFPALVYFRNGN 241 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~----~~~~~~v~~~Ptl~~~~~g~ 241 (285)
..|..+||++|.++...+++..-. .....+ .++. +.+..+..++|++.+ +|+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~i~-----~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~ 58 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKGVT-----FTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDV 58 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcCCC-----cEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 567889999999999999876433 334445 3333 334447788999744 665
No 364
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.84 E-value=0.046 Score=38.73 Aligned_cols=69 Identities=19% Similarity=0.370 Sum_probs=40.8
Q ss_pred HHHHHHHhCCeEEEEEE----CCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cCh----HHHHhcCCcccCeEEEEeCC
Q psy159 170 MLETMVEETQYLAVYFY----KLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDP----QLAKRYSIKTFPALVYFRNG 240 (285)
Q Consensus 170 ~~~~~~~~~~~~~v~F~----a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~----~~~~~~~v~~~Ptl~~~~~g 240 (285)
..++++++++ ++|+-. .|||++|.++...|.++...| ....+ +++ .+.+..|-+.+|.+.+ +|
T Consensus 4 ~v~~~i~~~~-Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~-----~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g 75 (97)
T TIGR00365 4 RIKEQIKENP-VVLYMKGTPQFPQCGFSARAVQILKACGVPF-----AYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KG 75 (97)
T ss_pred HHHHHhccCC-EEEEEccCCCCCCCchHHHHHHHHHHcCCCE-----EEEECCCCHHHHHHHHHHhCCCCCCEEEE--CC
Confidence 3445555554 434332 289999999999998874332 23333 333 3444456678898754 66
Q ss_pred eEEEEecCC
Q psy159 241 NPLIFEGEN 249 (285)
Q Consensus 241 ~~~~y~g~~ 249 (285)
+ +-|+.
T Consensus 76 ~---~iGG~ 81 (97)
T TIGR00365 76 E---FVGGC 81 (97)
T ss_pred E---EEeCh
Confidence 5 44554
No 365
>KOG2603|consensus
Probab=95.83 E-value=0.057 Score=45.87 Aligned_cols=111 Identities=17% Similarity=0.288 Sum_probs=77.0
Q ss_pred ccccccccccHHHHHHHHHh---CCeEEEEEECC----CChhhHHHHHHHHHHHhhcCcC-------CeEEEEE---cCh
Q psy159 158 KTEDRIELITRVMLETMVEE---TQYLAVYFYKL----NCNICDQILEGLEKVDDECDIY-------GIHMVKI---QDP 220 (285)
Q Consensus 158 ~~~~~v~~~~~~~~~~~~~~---~~~~~v~F~a~----~c~~c~~~~~~~~~la~~~~~~-------~i~~~~i---~~~ 220 (285)
.++..+..++++.+..++.. +-.++++|.|. .|.-|+.....+..+|..+... ++-|..+ +.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 44566778999999998775 33477888775 7999999999999998886531 3556666 778
Q ss_pred HHHHhcCCcccCeEEEEeC--CeEE---EEe-cCCccchhHHHHHhhhcCCCCC
Q psy159 221 QLAKRYSIKTFPALVYFRN--GNPL---IFE-GENKILKGTYIGTYISTKAFSL 268 (285)
Q Consensus 221 ~~~~~~~v~~~Ptl~~~~~--g~~~---~y~-g~~~~e~~~~~~~~~~~~~~~~ 268 (285)
++.+.+++.+.|++.+|+. |++. .++ +....+.+.+..|..+..+...
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 9999999999999999943 2222 222 2233344445666555555443
No 366
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.83 E-value=0.099 Score=36.74 Aligned_cols=91 Identities=12% Similarity=0.180 Sum_probs=62.3
Q ss_pred cHHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-----cChHHHHhcCCc----ccC-eEEE
Q psy159 167 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-----QDPQLAKRYSIK----TFP-ALVY 236 (285)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-----~~~~~~~~~~v~----~~P-tl~~ 236 (285)
+-.+|.+++.....+++.|..+--. -......+.++|+..+|. -.++.+ +...+|+++.|. .-| +|.-
T Consensus 8 d~KdfKKLLRTr~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG~-gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH 85 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSKSAKS-AEALLKLLSDVAQAVKGQ-GTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH 85 (112)
T ss_pred chHHHHHHHhhcCcEEEEEecchhh-HHHHHHHHHHHHHHhcCc-eeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence 4568888888888888887665332 234556889999999973 344444 457799999998 444 5777
Q ss_pred EeCCeEE-EEecCCccchhHHHHHhh
Q psy159 237 FRNGNPL-IFEGENKILKGTYIGTYI 261 (285)
Q Consensus 237 ~~~g~~~-~y~g~~~~e~~~~~~~~~ 261 (285)
|++|... .|+-..+ ..++++|+.
T Consensus 86 YKdG~fHkdYdR~~t--~kSmv~Flr 109 (112)
T cd03067 86 YKDGDFHTEYNRQLT--FKSMVAFLR 109 (112)
T ss_pred ccCCCccccccchhh--HHHHHHHhh
Confidence 8999866 6765443 445666654
No 367
>PRK13599 putative peroxiredoxin; Provisional
Probab=95.80 E-value=0.091 Score=43.09 Aligned_cols=65 Identities=6% Similarity=0.146 Sum_probs=44.9
Q ss_pred CCe-EEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE------------------------------cChHHHHhc
Q psy159 178 TQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------------QDPQLAKRY 226 (285)
Q Consensus 178 ~~~-~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------------~~~~~~~~~ 226 (285)
++. +++.|++.||+.|....+.+.++..+|...++.+.-+ ....+++.|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 344 4567789999999999899998888875433444333 234567778
Q ss_pred CCc-------ccCeEEEEe-CCeE
Q psy159 227 SIK-------TFPALVYFR-NGNP 242 (285)
Q Consensus 227 ~v~-------~~Ptl~~~~-~g~~ 242 (285)
++. ..|+++++. +|+.
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~I 131 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTI 131 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEE
Confidence 873 578888885 6764
No 368
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.77 E-value=0.032 Score=37.18 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=34.7
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cChH----HHHhcCCc-ccCeEEEEeCCeE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQ----LAKRYSIK-TFPALVYFRNGNP 242 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~----~~~~~~v~-~~Ptl~~~~~g~~ 242 (285)
+..|..++|++|..+...|++..-. .....+ .+++ +.+..+.. ++|+++ -+|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~-----~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVD-----YEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCc-----EEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEE
Confidence 4678889999999999988875322 334444 3333 33345665 899774 46653
No 369
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.75 E-value=0.054 Score=35.83 Aligned_cols=65 Identities=9% Similarity=0.140 Sum_probs=40.0
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCC----hhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHHH
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD----PRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQ 152 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~----~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~~ 152 (285)
++.|..+||+.|.+....+.+. +.......++. ..+....|...+|++. .+|+. -|+. +++.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~---igg~---~~l~~ 69 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGEL---IGGS---DDLEK 69 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEE---EeCH---HHHHH
Confidence 5789999999999998877754 22233444442 1223335888999873 45543 2332 36777
Q ss_pred HH
Q psy159 153 WL 154 (285)
Q Consensus 153 fi 154 (285)
|+
T Consensus 70 ~l 71 (72)
T cd03029 70 YF 71 (72)
T ss_pred Hh
Confidence 65
No 370
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.74 E-value=0.1 Score=43.96 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=47.0
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE----------------------------------------
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---------------------------------------- 217 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---------------------------------------- 217 (285)
.+.+++.|..+.|++|+++.+.+..+.+.- ++.+..+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g---~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDSG---KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhcC---ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 456788899999999999988766543321 1222111
Q ss_pred -------------cChHHHHhcCCcccCeEEEEe-CCeEEEEecCCc
Q psy159 218 -------------QDPQLAKRYSIKTFPALVYFR-NGNPLIFEGENK 250 (285)
Q Consensus 218 -------------~~~~~~~~~~v~~~Ptl~~~~-~g~~~~y~g~~~ 250 (285)
.+..+.+++||++.|++++-. +|+.....|...
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~ 240 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPD 240 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCC
Confidence 112256679999999999875 466557778764
No 371
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=95.64 E-value=0.32 Score=36.11 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=52.4
Q ss_pred ChhHHHHHHh--cCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC---ChhHHhhhCCCCCCe-EEEEccc
Q psy159 62 NRRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPA-VVYFRHR 135 (285)
Q Consensus 62 ~~~~f~~~~~--~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~---~~~l~~~~~i~~~Pt-l~~~~~g 135 (285)
+....|+.+. ..+.+++-|-.+|-+.|.++-..+.++|..+++. ..+..+| -+++.+.|.+. -|. +.+|-++
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn 84 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN 84 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence 4456667653 3467889999999999999999999999999765 4444444 56778889999 664 5555344
Q ss_pred cc
Q psy159 136 FP 137 (285)
Q Consensus 136 ~~ 137 (285)
+.
T Consensus 85 kh 86 (133)
T PF02966_consen 85 KH 86 (133)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 372
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.64 E-value=0.043 Score=37.48 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=33.6
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-ChhHH---hhhCCCCCCeEEE
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYA---RKWGVTKLPAVVY 131 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~~l~---~~~~i~~~Ptl~~ 131 (285)
+..|..+||++|+.....+.+. +..+..+.++ +++.. +..|....|++.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-----gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-----GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 5688999999999988888653 2234445555 34333 3356778999865
No 373
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.62 E-value=0.024 Score=40.38 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=35.6
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEc-C---h----HHHHhcCCcccCeEEEEeCCeE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-D---P----QLAKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-~---~----~~~~~~~v~~~Ptl~~~~~g~~ 242 (285)
++.|..+||++|.++...|.++...+ ....++ . . .+.+..+.+++|.+ |-+|+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~-----~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~ 71 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNP-----AVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKL 71 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCC-----EEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEE
Confidence 56788999999999999888774333 344441 2 1 23333467889997 446753
No 374
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.42 E-value=0.048 Score=43.27 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=24.2
Q ss_pred EEeCCCChhHHHHHHHHHhHHhhcCC-CCcEEE
Q psy159 79 FFYETDHKDSVKVLERLEKIDGETDN-MDITFV 110 (285)
Q Consensus 79 ~Fya~~c~~C~~~~~~~~~~a~~~~~-~~v~~~ 110 (285)
+|..|.|+.|-.+.|.|.++...++. ..+.++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 69999999999999999999999943 334444
No 375
>PRK13189 peroxiredoxin; Provisional
Probab=95.39 E-value=0.15 Score=42.14 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=43.3
Q ss_pred CCe-EEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE------------------------------cChHHHHhc
Q psy159 178 TQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------------QDPQLAKRY 226 (285)
Q Consensus 178 ~~~-~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------------~~~~~~~~~ 226 (285)
++. +++.|++.||+.|....+.|.++..+|+..++.+.-+ ....+++.|
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~y 114 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKL 114 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHh
Confidence 443 4445679999999998888888888876433444333 123467777
Q ss_pred CCc-------ccCeEEEEe-CCeE
Q psy159 227 SIK-------TFPALVYFR-NGNP 242 (285)
Q Consensus 227 ~v~-------~~Ptl~~~~-~g~~ 242 (285)
++. ..|+.+++. +|+.
T Consensus 115 gv~~~~~~~~~~r~tfIID~~G~I 138 (222)
T PRK13189 115 GMISPGKGTNTVRAVFIIDPKGII 138 (222)
T ss_pred CCCccccCCCceeEEEEECCCCeE
Confidence 764 357777775 6764
No 376
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.34 E-value=0.53 Score=33.92 Aligned_cols=91 Identities=8% Similarity=0.096 Sum_probs=61.7
Q ss_pred cccHHHHHHHHHhC-CeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcChHHHHhcCCcccCeEEEEeCC---
Q psy159 165 LITRVMLETMVEET-QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNG--- 240 (285)
Q Consensus 165 ~~~~~~~~~~~~~~-~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~v~~~Ptl~~~~~g--- 240 (285)
.-+.++++.++.+. ...+|-|+...-+ .....|.++|..++. +..|+.+....+..++++. .|.+++|+..
T Consensus 5 i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~~~~~~~~~~~~-~~~vvl~rp~~~~ 79 (107)
T cd03068 5 LQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTFDSEIFKSLKVS-PGQLVVFQPEKFQ 79 (107)
T ss_pred cCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEEChHHHHHhcCCC-CCceEEECcHHHh
Confidence 34666788887765 6777777765332 456778899999976 6899888778888899876 5777777432
Q ss_pred -----eEEEEecC-CccchhHHHHHhh
Q psy159 241 -----NPLIFEGE-NKILKGTYIGTYI 261 (285)
Q Consensus 241 -----~~~~y~g~-~~~e~~~~~~~~~ 261 (285)
+...|.|. .+.++ .|..|+.
T Consensus 80 ~k~e~~~~~~~~~~~~~~~-~~~~f~~ 105 (107)
T cd03068 80 SKYEPKSHVLNKKDSTSED-ELKDFFK 105 (107)
T ss_pred hhcCcceeeeeccccchHH-HHHHHHh
Confidence 34578877 55443 2444443
No 377
>PRK10638 glutaredoxin 3; Provisional
Probab=95.24 E-value=0.089 Score=35.94 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=33.6
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-Ch----hHHhhhCCCCCCeEEE
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DP----RYARKWGVTKLPAVVY 131 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~----~l~~~~~i~~~Ptl~~ 131 (285)
++.|..+||++|.+....+++. +.......++ +. .+.+..|...+|++.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5678889999999999888765 2234445554 22 2344457778998743
No 378
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.21 E-value=0.07 Score=36.40 Aligned_cols=48 Identities=13% Similarity=0.414 Sum_probs=32.3
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEE--EE-cChHH---HHhcCCcccCeEEE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMV--KI-QDPQL---AKRYSIKTFPALVY 236 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~--~i-~~~~~---~~~~~v~~~Ptl~~ 236 (285)
+..|..+||++|..+...|++. ++.|- .+ ..++. .+..+..++|++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 5678889999999998888664 24443 33 33332 23446778999865
No 379
>PRK13191 putative peroxiredoxin; Provisional
Probab=95.21 E-value=0.21 Score=40.97 Aligned_cols=40 Identities=8% Similarity=0.149 Sum_probs=28.7
Q ss_pred CCeEEE-EEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 178 TQYLAV-YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 178 ~~~~~v-~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
++.++| .|++.||+.|....+.|.+++.+|+..++.+.-+
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~Vigv 73 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGL 73 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 344444 6679999999999999999988886433444444
No 380
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=95.00 E-value=0.2 Score=40.66 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=28.8
Q ss_pred eEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 180 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 180 ~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
.+++.|++.||+.|....+.+.++..+++..++.+.-+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigv 65 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGL 65 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 34456789999999999999999988887544555444
No 381
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.97 E-value=0.13 Score=35.83 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=31.6
Q ss_pred CCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cCh----HHHHhcCCcccCeEEEEeCCeE
Q psy159 188 LNCNICDQILEGLEKVDDECDIYGIHMVKI-QDP----QLAKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 188 ~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~----~~~~~~~v~~~Ptl~~~~~g~~ 242 (285)
+||++|+++...|++....| ....+ .++ .+.+..+-+++|.+ |.+|+.
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y-----~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~ 73 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDF-----GTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGEL 73 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCe-----EEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEE
Confidence 79999999999998875333 33334 233 34444577789997 447753
No 382
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=94.94 E-value=0.16 Score=41.16 Aligned_cols=40 Identities=8% Similarity=0.228 Sum_probs=30.9
Q ss_pred CCeEEEEEEC-CCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 178 TQYLAVYFYK-LNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 178 ~~~~~v~F~a-~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
++.++|.||+ .||..|....+.+.++.+++...++.+..+
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~I 76 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLAC 76 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 5678889995 689999988788888888887545555555
No 383
>PRK10638 glutaredoxin 3; Provisional
Probab=94.93 E-value=0.11 Score=35.53 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=34.9
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cC----hHHHHhcCCcccCeEEEEeCCe
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QD----PQLAKRYSIKTFPALVYFRNGN 241 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~----~~~~~~~~v~~~Ptl~~~~~g~ 241 (285)
++.|..+||++|+++...+++....| ....+ .+ ..+.+..+..++|++.+ +|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y-----~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSF-----QEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCc-----EEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 45677899999999998888764332 23344 22 23445557778998744 664
No 384
>KOG3171|consensus
Probab=94.92 E-value=0.13 Score=41.30 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=62.7
Q ss_pred cceeec-ChhHHHHHHhcC---CcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC--ChhHHhhhCCCCCCeE
Q psy159 56 NEIEEV-NRRMLDKLLEEN---EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--DPRYARKWGVTKLPAV 129 (285)
Q Consensus 56 ~~v~~l-~~~~f~~~~~~~---~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~--~~~l~~~~~i~~~Ptl 129 (285)
..|.++ +...|-..+... ..++|..|-+.-.-|..+...+.-+|..+.. +.|.++- ..-...+|..+..|+|
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~--vKFckikss~~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI--VKFCKIKSSNTGASDRFSLNVLPTL 215 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc--eeEEEeeeccccchhhhcccCCceE
Confidence 357777 456776666543 4577999999999999999999999988854 6666655 5556788999999999
Q ss_pred EEEccccc
Q psy159 130 VYFRHRFP 137 (285)
Q Consensus 130 ~~~~~g~~ 137 (285)
++|++|..
T Consensus 216 liYkgGeL 223 (273)
T KOG3171|consen 216 LIYKGGEL 223 (273)
T ss_pred EEeeCCch
Confidence 99999865
No 385
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.63 E-value=0.077 Score=40.48 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=26.7
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcC
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECD 208 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~ 208 (285)
.+..++.|+.++|++|+.+.+.+.++...+.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 4678889999999999999999999876664
No 386
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.068 Score=36.38 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=34.7
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEc--C-hHHHHhc-CCcccCeEEEEeCCe
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ--D-PQLAKRY-SIKTFPALVYFRNGN 241 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~--~-~~~~~~~-~v~~~Ptl~~~~~g~ 241 (285)
++.|..++|++|++....+.+..-.|.. +.+..-. . .+..++- |.+++|.|.+ +|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~~~--i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDYEE--IDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCcEE--EEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence 4567789999999999988866444331 1111111 1 1334444 7889998877 454
No 387
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.21 Score=33.97 Aligned_cols=50 Identities=8% Similarity=0.217 Sum_probs=32.3
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC--C----hhHHhhh-CCCCCCeEEE
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--D----PRYARKW-GVTKLPAVVY 131 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~--~----~~l~~~~-~i~~~Ptl~~ 131 (285)
++.|..++|++|++....+.+.. .....+.++ . .+..++- |....|+|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g-----~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKG-----VDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcC-----CCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 57889999999999887777442 223333333 2 1333444 7889998766
No 388
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.37 E-value=0.15 Score=35.50 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=29.9
Q ss_pred CCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-C----hhHHhhhCCCCCCeEEEEcccc
Q psy159 83 TDHKDSVKVLERLEKIDGETDNMDITFVKMA-D----PRYARKWGVTKLPAVVYFRHRF 136 (285)
Q Consensus 83 ~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~----~~l~~~~~i~~~Ptl~~~~~g~ 136 (285)
|||++|++....+.+..- ....+.++ + ..+.+..|-..+|+++ .+|+
T Consensus 21 ~~Cp~C~~ak~~L~~~~i-----~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~ 72 (90)
T cd03028 21 PRCGFSRKVVQILNQLGV-----DFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGE 72 (90)
T ss_pred CCCcHHHHHHHHHHHcCC-----CeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCE
Confidence 799999998888876632 23333433 2 2344456778899874 3554
No 389
>PRK10824 glutaredoxin-4; Provisional
Probab=94.13 E-value=0.17 Score=37.00 Aligned_cols=66 Identities=24% Similarity=0.461 Sum_probs=39.3
Q ss_pred HHHHHHHhCCeEEEEEEC----CCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cChH----HHHhcCCcccCeEEEEeCC
Q psy159 170 MLETMVEETQYLAVYFYK----LNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQ----LAKRYSIKTFPALVYFRNG 240 (285)
Q Consensus 170 ~~~~~~~~~~~~~v~F~a----~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~----~~~~~~v~~~Ptl~~~~~g 240 (285)
-.++.+++++ ++|+--. |||++|+++...|..+...|. ...+ .++. +.+.-+-+.+|.+.+ +|
T Consensus 7 ~v~~~I~~~~-Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~-----~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G 78 (115)
T PRK10824 7 KIQRQIAENP-ILLYMKGSPKLPSCGFSAQAVQALSACGERFA-----YVDILQNPDIRAELPKYANWPTFPQLWV--DG 78 (115)
T ss_pred HHHHHHhcCC-EEEEECCCCCCCCCchHHHHHHHHHHcCCCce-----EEEecCCHHHHHHHHHHhCCCCCCeEEE--CC
Confidence 3455566654 3333332 699999999999988754432 3344 3333 333346677888766 67
Q ss_pred eEE
Q psy159 241 NPL 243 (285)
Q Consensus 241 ~~~ 243 (285)
+.+
T Consensus 79 ~~I 81 (115)
T PRK10824 79 ELV 81 (115)
T ss_pred EEE
Confidence 543
No 390
>KOG3170|consensus
Probab=94.11 E-value=0.58 Score=37.32 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=67.8
Q ss_pred ceeecChhHHHHH-HhcC-Cc-EEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEc
Q psy159 57 EIEEVNRRMLDKL-LEEN-EF-VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFR 133 (285)
Q Consensus 57 ~v~~l~~~~f~~~-~~~~-~~-~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~ 133 (285)
.|..++...+-+- .+.+ .. ++|..|...-+.|.-+...++.+|..|.. +.|+++-.......|--...|||++|.
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~at~cIpNYPe~nlPTl~VY~ 169 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPATTCIPNYPESNLPTLLVYH 169 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecccccccCCCcccCCCeEEEee
Confidence 4777776666443 3333 33 56778999999999999999999999853 778877655555566667889999999
Q ss_pred cccc-------eeecCCCchhHHHHHHHhh
Q psy159 134 HRFP-------SIYRGDLSEEEEVLQWLIT 156 (285)
Q Consensus 134 ~g~~-------~~y~g~~~~~~~l~~fi~~ 156 (285)
.|.. ..+-|.....+++..++.+
T Consensus 170 ~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 170 HGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred cchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 8743 2355555554344444443
No 391
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.08 E-value=0.2 Score=34.09 Aligned_cols=53 Identities=32% Similarity=0.621 Sum_probs=40.8
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cChHHHHhcCCcccCeEEE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~~~v~~~Ptl~~ 236 (285)
+++|..+.|+-|..+...++.++.... ..+....| +++.+..+|+. .+|.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~ 55 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHI 55 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEE
Confidence 577889999999999999998765544 23555555 78889999996 6998666
No 392
>PRK10824 glutaredoxin-4; Provisional
Probab=93.86 E-value=0.46 Score=34.73 Aligned_cols=60 Identities=12% Similarity=0.275 Sum_probs=34.8
Q ss_pred HHHHHHhcCCcEEEEEeC-----CCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-ChhH----HhhhCCCCCCeEEE
Q psy159 65 MLDKLLEENEFVTVFFYE-----TDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRY----ARKWGVTKLPAVVY 131 (285)
Q Consensus 65 ~f~~~~~~~~~~lv~Fya-----~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~~l----~~~~~i~~~Ptl~~ 131 (285)
-.++++.++ ++ |.|.. |||++|.+....+.+..-. ...+.++ ++.+ -+.-|-..+|.+++
T Consensus 7 ~v~~~I~~~-~V-vvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~-----~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 7 KIQRQIAEN-PI-LLYMKGSPKLPSCGFSAQAVQALSACGER-----FAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHHHhcC-CE-EEEECCCCCCCCCchHHHHHHHHHHcCCC-----ceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 345556554 34 34444 6999999999888776322 3334444 3332 23345667887654
No 393
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.47 E-value=0.16 Score=39.96 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=27.8
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhc
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGET 102 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~ 102 (285)
+++..++.|+++.|++|+.+.+.+.++.+++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~ 44 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL 44 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC
Confidence 5577899999999999999999999887776
No 394
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.21 E-value=0.18 Score=39.69 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=32.7
Q ss_pred hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 177 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
+.++.++.|+...|++|+.+.+.+..+.+++.+ ++.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEc
Confidence 457789999999999999999999999888764 5655544
No 395
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=92.66 E-value=0.23 Score=38.48 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=35.7
Q ss_pred CcEEEEE-eCCCChhHHHH-HHHHHhHHhhcCCCCc-EEEE--eC----ChhHHhhhCC-CCCC
Q psy159 74 EFVTVFF-YETDHKDSVKV-LERLEKIDGETDNMDI-TFVK--MA----DPRYARKWGV-TKLP 127 (285)
Q Consensus 74 ~~~lv~F-ya~~c~~C~~~-~~~~~~~a~~~~~~~v-~~~~--~~----~~~l~~~~~i-~~~P 127 (285)
+++++.| -+.||+.|-.- .+.|.+...++...++ .++. .| ....+++.++ ..+|
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR 93 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence 4444444 46699999997 9999999988855555 3443 44 3456666776 2444
No 396
>KOG1752|consensus
Probab=92.41 E-value=0.64 Score=33.30 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=36.1
Q ss_pred HHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC----Chh----HHhhhCCCCCCeEEE
Q psy159 66 LDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPR----YARKWGVTKLPAVVY 131 (285)
Q Consensus 66 f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~----~~~----l~~~~~i~~~Ptl~~ 131 (285)
....+.++ + +|.|..+||+.|..+...|.+. +.+..++.+| ..+ +.+--+-...|.+++
T Consensus 7 v~~~i~~~-~-VVifSKs~C~~c~~~k~ll~~~-----~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 7 VRKMISEN-P-VVIFSKSSCPYCHRAKELLSDL-----GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHhhcC-C-EEEEECCcCchHHHHHHHHHhC-----CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 34444443 3 5889999999999988777762 2235566665 122 222234557897655
No 397
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=92.40 E-value=0.33 Score=37.44 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=29.7
Q ss_pred CCcEEEEEeCCCChhHHHHHHHHHhHHhhc-CCCCcEEEE
Q psy159 73 NEFVTVFFYETDHKDSVKVLERLEKIDGET-DNMDITFVK 111 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~-~~~~v~~~~ 111 (285)
.+..++.|++..|++|.++.+.+.++-+.+ +...+.+.-
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~ 51 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVF 51 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEE
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEE
Confidence 467899999999999999999998887777 333355554
No 398
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=92.18 E-value=0.48 Score=36.48 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=31.2
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhc--CcCCeEEEEE
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDEC--DIYGIHMVKI 217 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~--~~~~i~~~~i 217 (285)
.++.++.|++..|++|.++.+.+.++.+++ .+ ++.+...
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~ 52 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFR 52 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEE
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEE
Confidence 467889999999999999999999988888 44 5666655
No 399
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=0.66 Score=43.95 Aligned_cols=90 Identities=14% Similarity=0.264 Sum_probs=60.8
Q ss_pred HHhhhcc-ccccccccHHHHHHHHHhCCeEEEEEECCCChhhHHHHHH-HH--HHHhhcCcCCeEEEEE---cChHHHHh
Q psy159 153 WLITQKT-EDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEG-LE--KVDDECDIYGIHMVKI---QDPQLAKR 225 (285)
Q Consensus 153 fi~~~~~-~~~v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~-~~--~la~~~~~~~i~~~~i---~~~~~~~~ 225 (285)
|+.++.. |-....-..+.|++...+++|++|.....||.-|+-|... |+ ++|+.++. +..-++| +-|++-+.
T Consensus 17 YL~~ha~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-~FV~IKVDREERPDvD~~ 95 (667)
T COG1331 17 YLLQHAHNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-NFVPVKVDREERPDVDSL 95 (667)
T ss_pred HHHhccCCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-CceeeeEChhhccCHHHH
Confidence 4444443 4445778899999999999999999999999999987643 32 55655554 3333444 34444443
Q ss_pred cC--------CcccC-eEEEEeCCeEE
Q psy159 226 YS--------IKTFP-ALVYFRNGNPL 243 (285)
Q Consensus 226 ~~--------v~~~P-tl~~~~~g~~~ 243 (285)
|. -.|+| |+++-.+|+++
T Consensus 96 Ym~~~q~~tG~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 96 YMNASQAITGQGGWPLTVFLTPDGKPF 122 (667)
T ss_pred HHHHHHHhccCCCCceeEEECCCCcee
Confidence 32 35799 55566899987
No 400
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.87 Score=43.17 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=56.4
Q ss_pred cChhHHHHHHhcCCcEEEEEeCCCChhHHHHHHHH---HhHHhhcCCCCcEEEEeC---C-------hhHHhhhCCC-CC
Q psy159 61 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA---D-------PRYARKWGVT-KL 126 (285)
Q Consensus 61 l~~~~f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~---~~~a~~~~~~~v~~~~~~---~-------~~l~~~~~i~-~~ 126 (285)
=.++.|.+.-..++|+++---.+||..|.-|+.+= .++|..++.. ++-++|| . ..+|+....+ ++
T Consensus 31 W~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-FV~IKVDREERPDvD~~Ym~~~q~~tG~GGW 109 (667)
T COG1331 31 WGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-FVPVKVDREERPDVDSLYMNASQAITGQGGW 109 (667)
T ss_pred cCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-ceeeeEChhhccCHHHHHHHHHHHhccCCCC
Confidence 46788999999999999999999999999887744 6788777543 7777887 2 3445544333 69
Q ss_pred CeEEEEcc-ccc
Q psy159 127 PAVVYFRH-RFP 137 (285)
Q Consensus 127 Ptl~~~~~-g~~ 137 (285)
|--++..+ |+|
T Consensus 110 PLtVfLTPd~kP 121 (667)
T COG1331 110 PLTVFLTPDGKP 121 (667)
T ss_pred ceeEEECCCCce
Confidence 97777664 666
No 401
>KOG1752|consensus
Probab=91.03 E-value=2.5 Score=30.26 Aligned_cols=67 Identities=22% Similarity=0.417 Sum_probs=40.6
Q ss_pred HHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE----cChHH----HHhcCCcccCeEEEEeCCeE
Q psy159 171 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----QDPQL----AKRYSIKTFPALVYFRNGNP 242 (285)
Q Consensus 171 ~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----~~~~~----~~~~~v~~~Ptl~~~~~g~~ 242 (285)
+.+.+.++. +|.|-.+||..|+.+...|..+.. ...+..+ ...++ .+.-+-+.+|.+.+ +|+.
T Consensus 7 v~~~i~~~~--VVifSKs~C~~c~~~k~ll~~~~v-----~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~ 77 (104)
T KOG1752|consen 7 VRKMISENP--VVIFSKSSCPYCHRAKELLSDLGV-----NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKF 77 (104)
T ss_pred HHHHhhcCC--EEEEECCcCchHHHHHHHHHhCCC-----CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEE
Confidence 444454443 456788999999999888887321 3455555 22232 22334558898766 7764
Q ss_pred EEEecCC
Q psy159 243 LIFEGEN 249 (285)
Q Consensus 243 ~~y~g~~ 249 (285)
+ |..
T Consensus 78 i---GG~ 81 (104)
T KOG1752|consen 78 I---GGA 81 (104)
T ss_pred E---cCH
Confidence 4 654
No 402
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=90.71 E-value=0.7 Score=41.87 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=32.8
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-Chh---HHhh---------hCCCCCCeEEE
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPR---YARK---------WGVTKLPAVVY 131 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-~~~---l~~~---------~~i~~~Ptl~~ 131 (285)
++.|..+||++|++.+..+.+.. .....+.++ ++. +-++ .|....|++.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~g-----i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAND-----IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC-----CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 67899999999999888777652 224445554 221 1112 36678899866
No 403
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=90.29 E-value=0.44 Score=38.76 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=28.1
Q ss_pred CCcEEEEEeCCCChhHHHHHHHH---HhHHhhcCCCCcEEEE
Q psy159 73 NEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVK 111 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~C~~~~~~~---~~~a~~~~~~~v~~~~ 111 (285)
+++-+|.|++-.|+||.++.+.+ +.+.+.+.+ ++.++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~ 77 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTK 77 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEE
Confidence 45678999999999999999876 667666632 244443
No 404
>KOG2640|consensus
Probab=90.25 E-value=0.15 Score=43.46 Aligned_cols=83 Identities=16% Similarity=0.360 Sum_probs=62.5
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE----cChHHHHhcCCcccCeEEEEeCCeEEEEecCCccch
Q psy159 178 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILK 253 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g~~~~e~ 253 (285)
...+-+.||+.||+-.+...|.+.-....+. .+....+ ..+.+.+++++.+.|++++...-=+..|-|.+. .
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~--~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~--l 151 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFS--SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERD--L 151 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhcc--ccccccHHHHhhcccchhccccccCCcceeeccccchhhccccc--H
Confidence 4568899999999988888888876666665 2333334 467788999999999999987776778888885 4
Q ss_pred hHHHHHhhhcC
Q psy159 254 GTYIGTYISTK 264 (285)
Q Consensus 254 ~~~~~~~~~~~ 264 (285)
..+.+++.+--
T Consensus 152 ~sLv~fy~~i~ 162 (319)
T KOG2640|consen 152 ASLVNFYTEIT 162 (319)
T ss_pred HHHHHHHHhhc
Confidence 55677776543
No 405
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=89.46 E-value=1.1 Score=34.59 Aligned_cols=55 Identities=16% Similarity=0.346 Sum_probs=39.7
Q ss_pred cCCcEEEEEeC-CCChhHHHHHHHHHhHHhhcCCCCcEEEEeC------ChhHHhhhCCCCCC
Q psy159 72 ENEFVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVKMA------DPRYARKWGVTKLP 127 (285)
Q Consensus 72 ~~~~~lv~Fya-~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~------~~~l~~~~~i~~~P 127 (285)
.+++++++||. .+++-|-.-+-.|++.-.++...+..++-+. +..+++++++. +|
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~-f~ 90 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT-FP 90 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-ce
Confidence 45578888884 4788898888888888888876676666543 45677777766 54
No 406
>PHA03075 glutaredoxin-like protein; Provisional
Probab=88.42 E-value=0.46 Score=34.26 Aligned_cols=39 Identities=28% Similarity=0.623 Sum_probs=31.2
Q ss_pred CeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 179 QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 179 ~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
+..++.|.-|.|+-|+.....+.++..+|.-.++++...
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf 40 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSF 40 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee
Confidence 457899999999999999999999988876434555444
No 407
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=88.26 E-value=0.73 Score=37.47 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=29.7
Q ss_pred CCeEEEEEECCCChhhHHHHHHH---HHHHhhcCcCCeEEEEE
Q psy159 178 TQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI 217 (285)
Q Consensus 178 ~~~~~v~F~a~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i 217 (285)
+++-++.|++-.|+||..+.+.+ +.+.+.+.+ ++.+...
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~ 78 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKY 78 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEe
Confidence 35668999999999999999876 777777764 5555544
No 408
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=88.01 E-value=1.5 Score=33.90 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=29.8
Q ss_pred CCeEEEEEECC-CChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 178 TQYLAVYFYKL-NCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 178 ~~~~~v~F~a~-~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
++.++++||.. +++-|-.-.-.|++.-.++...++.+.-|
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GI 70 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGI 70 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Confidence 56888999954 88889888888888887777545555544
No 409
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=87.81 E-value=1.1 Score=34.72 Aligned_cols=51 Identities=14% Similarity=0.183 Sum_probs=34.8
Q ss_pred CCeEEEEEE-CCCChhhHHH-HHHHHHHHhhcCcCCe-EEEEE------cChHHHHhcCC
Q psy159 178 TQYLAVYFY-KLNCNICDQI-LEGLEKVDDECDIYGI-HMVKI------QDPQLAKRYSI 228 (285)
Q Consensus 178 ~~~~~v~F~-a~~c~~c~~~-~~~~~~la~~~~~~~i-~~~~i------~~~~~~~~~~v 228 (285)
++.++++|| ..||+.|..- .+.|.+...++...++ .+.-+ ....+++++++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 355666666 5699999998 8999988888874445 35555 33445666655
No 410
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=87.77 E-value=3.4 Score=26.89 Aligned_cols=48 Identities=6% Similarity=0.083 Sum_probs=31.5
Q ss_pred EEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC----ChhHHhhhCCCCCCeEE
Q psy159 78 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVV 130 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~----~~~l~~~~~i~~~Ptl~ 130 (285)
++|+.+||+.|.+..-.+.+. +..+....++ ..++.+.......|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-----GITVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 467889999999887666554 3334555554 24454545566789885
No 411
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=87.65 E-value=6 Score=27.74 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=46.1
Q ss_pred CcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEccccc--eeecCCCchhHHHH
Q psy159 74 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFP--SIYRGDLSEEEEVL 151 (285)
Q Consensus 74 ~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~--~~y~g~~~~~~~l~ 151 (285)
...++.|..+. ..|..+..-++++|..-.. +.+...+.. ...|++.+..+|.. ++|.|-..-. ++.
T Consensus 20 pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdk--I~~~~~~~~--------~~~P~~~i~~~~~~~gIrF~GiP~Gh-Ef~ 87 (94)
T cd02974 20 PVELVASLDDS-EKSAELLELLEEIASLSDK--ITLEEDNDD--------ERKPSFSINRPGEDTGIRFAGIPMGH-EFT 87 (94)
T ss_pred CEEEEEEeCCC-cchHHHHHHHHHHHHhCCc--eEEEEecCC--------CCCCEEEEecCCCcccEEEEecCCch-hHH
Confidence 33456676655 8898888888888765543 333322211 14799999887643 8899877665 677
Q ss_pred HHHh
Q psy159 152 QWLI 155 (285)
Q Consensus 152 ~fi~ 155 (285)
.||.
T Consensus 88 Slil 91 (94)
T cd02974 88 SLVL 91 (94)
T ss_pred HHHH
Confidence 7765
No 412
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=87.01 E-value=1.6 Score=39.65 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=33.9
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cChH---HHHh---------cCCcccCeEEEEeCCe
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQ---LAKR---------YSIKTFPALVYFRNGN 241 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~---~~~~---------~~v~~~Ptl~~~~~g~ 241 (285)
++.|..+||++|+++...+.+....| ....+ +.+. +.++ .|.+++|++.+ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~gi~~-----~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGANDIPF-----TQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCe-----EEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 56788999999999998888764332 23333 2221 2112 36678999866 554
No 413
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=86.64 E-value=1.5 Score=32.87 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=44.8
Q ss_pred cEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCCh-hHHhhhCCCC----CCeEEEEccccceeecCCCchhHH
Q psy159 75 FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADP-RYARKWGVTK----LPAVVYFRHRFPSIYRGDLSEEEE 149 (285)
Q Consensus 75 ~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~-~l~~~~~i~~----~Ptl~~~~~g~~~~y~g~~~~~~~ 149 (285)
.-++.|++|.|+-|..+...++.. +..|.....++- .+-+++||.. -=|..+ +| ...+|-...+ +
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~-----Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~G--y~vEGHVPa~-a 95 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKAN-----GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NG--YYVEGHVPAE-A 95 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhC-----CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cC--EEEeccCCHH-H
Confidence 346889999999999988877633 334566666644 4455688753 222222 23 2345655554 6
Q ss_pred HHHHHhhhc
Q psy159 150 VLQWLITQK 158 (285)
Q Consensus 150 l~~fi~~~~ 158 (285)
+..++.+..
T Consensus 96 I~~ll~~~p 104 (149)
T COG3019 96 IARLLAEKP 104 (149)
T ss_pred HHHHHhCCC
Confidence 777766543
No 414
>PHA03075 glutaredoxin-like protein; Provisional
Probab=84.21 E-value=1.6 Score=31.50 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=25.9
Q ss_pred CcEEEEEeCCCChhHHHHHHHHHhHHhhcC
Q psy159 74 EFVTVFFYETDHKDSVKVLERLEKIDGETD 103 (285)
Q Consensus 74 ~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~ 103 (285)
+.++++|-.|.|+-|+.....+.++..++.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 468999999999999999999988877664
No 415
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=84.03 E-value=3.6 Score=26.74 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=33.3
Q ss_pred EEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE----cChHHHHhcCCcccCeEEEEeCCe
Q psy159 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----QDPQLAKRYSIKTFPALVYFRNGN 241 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----~~~~~~~~~~v~~~Ptl~~~~~g~ 241 (285)
..|+.+||+.|+++.-.+++....+ .+..+ ..+++.+......+|++.. .+|.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~-----e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~ 58 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITV-----ELREVELKNKPAEMLAASPKGTVPVLVL-GNGT 58 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCc-----EEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCc
Confidence 3567889999999887776664433 33333 2345555556678898854 3354
No 416
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.79 E-value=3.2 Score=27.52 Aligned_cols=55 Identities=27% Similarity=0.441 Sum_probs=34.8
Q ss_pred EEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--------------cC-hH--HHHhcCCcccCeEEEEeCCeEE
Q psy159 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--------------QD-PQ--LAKRYSIKTFPALVYFRNGNPL 243 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------------~~-~~--~~~~~~v~~~Ptl~~~~~g~~~ 243 (285)
+.|++..|+.|..+...++.+.-.|. ++.| +. +. -.+..|--|+|+++. .+|+.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd-----~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYD-----FVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCce-----eeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 67999999999888777777754433 3333 11 11 234455568898876 566544
No 417
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=82.36 E-value=2.7 Score=27.26 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=32.3
Q ss_pred EEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--cChHHHHhcCCcccCeEEE
Q psy159 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~v~~~Ptl~~ 236 (285)
..|+.++|+.|+++.-.+....-.+....+.+..- ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 35778899999999888777654443211111110 2334555555567898864
No 418
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=80.23 E-value=20 Score=26.03 Aligned_cols=22 Identities=36% Similarity=0.766 Sum_probs=20.5
Q ss_pred cChHHHHhcCCcccCeEEEEeC
Q psy159 218 QDPQLAKRYSIKTFPALVYFRN 239 (285)
Q Consensus 218 ~~~~~~~~~~v~~~Ptl~~~~~ 239 (285)
-+|.+.++|+|+.+|++++.++
T Consensus 59 IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 59 IDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred EChhHHhhCCceEcCEEEEEcC
Confidence 3899999999999999999988
No 419
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=79.63 E-value=4 Score=32.28 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=25.5
Q ss_pred EEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 184 YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 184 ~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
+|..|.|+.|-...|.+.++..++.. .+.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~-~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN-KIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T-TEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC-cEEEEEE
Confidence 58899999999999999999999986 5655555
No 420
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=79.23 E-value=6.6 Score=30.08 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=17.5
Q ss_pred EEEEeCC------CChhHHHHHHHHHhH
Q psy159 77 TVFFYET------DHKDSVKVLERLEKI 98 (285)
Q Consensus 77 lv~Fya~------~c~~C~~~~~~~~~~ 98 (285)
+|.|+.+ +|++|.++...|+..
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~ 29 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF 29 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC
Confidence 4667777 999999988888765
No 421
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=78.93 E-value=2.9 Score=27.77 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=38.9
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCC-----hhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHH
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD-----PRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVL 151 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~-----~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~ 151 (285)
+.+++.++|+.|.+..-.+.+..- ......++. .++.+.-+-...|++..-.+| ...++ + ..|+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi-----~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~-~~l~e----s-~~I~ 70 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELEL-----DVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTG-VQMFE----S-ADIV 70 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCC-----cEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCC-eEEEc----H-HHHH
Confidence 356778899999988877766522 233344331 223233344568987532223 22221 2 3788
Q ss_pred HHHhhh
Q psy159 152 QWLITQ 157 (285)
Q Consensus 152 ~fi~~~ 157 (285)
+|+.+.
T Consensus 71 ~yL~~~ 76 (77)
T cd03041 71 KYLFKT 76 (77)
T ss_pred HHHHHh
Confidence 888753
No 422
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=77.62 E-value=4.6 Score=30.22 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=30.7
Q ss_pred ChHHHHhcCCcccCeEEEEeCCe------------EEEEecCCccchhHHHHHhh
Q psy159 219 DPQLAKRYSIKTFPALVYFRNGN------------PLIFEGENKILKGTYIGTYI 261 (285)
Q Consensus 219 ~~~~~~~~~v~~~Ptl~~~~~g~------------~~~y~g~~~~e~~~~~~~~~ 261 (285)
+|.+.++|+|+.+|++++.+++. ..+-.|+.+-+. .|..+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~--ALe~ia 112 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKG--ALEKMA 112 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHH--HHHHHH
Confidence 89999999999999999998774 335567775433 255554
No 423
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=77.41 E-value=3.3 Score=27.02 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=32.3
Q ss_pred EEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-----cChHHHHhcCCcccCeEEE
Q psy159 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-----~~~~~~~~~~v~~~Ptl~~ 236 (285)
..|+.+.|+.|++..-.++.....+.. ..... ..+.+.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~---~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLELNL---KEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCCEE---EEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 357889999999888777776554431 11121 2355555555667899853
No 424
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=77.06 E-value=2.1 Score=30.55 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=19.8
Q ss_pred EEEECCCChhhHHHHHHHHHHHhhc
Q psy159 183 VYFYKLNCNICDQILEGLEKVDDEC 207 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la~~~ 207 (285)
..|+.++|+.|++....+++....|
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~ 26 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEHGIEY 26 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCc
Confidence 4678999999999988888764433
No 425
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=76.11 E-value=2.3 Score=30.48 Aligned_cols=22 Identities=18% Similarity=0.233 Sum_probs=18.2
Q ss_pred EEEECCCChhhHHHHHHHHHHH
Q psy159 183 VYFYKLNCNICDQILEGLEKVD 204 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la 204 (285)
..|+.|+|+.|++....+++..
T Consensus 2 ~iy~~~~C~~crka~~~L~~~~ 23 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEARG 23 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHcC
Confidence 4678999999999988877664
No 426
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=75.54 E-value=8.9 Score=29.37 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=31.5
Q ss_pred EEEECC------CChhhHHHHHHHHHHHhhcCcCCeEEEEE-cC----hHHHHhcCC----cccCeEEEEeCCe
Q psy159 183 VYFYKL------NCNICDQILEGLEKVDDECDIYGIHMVKI-QD----PQLAKRYSI----KTFPALVYFRNGN 241 (285)
Q Consensus 183 v~F~a~------~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~----~~~~~~~~v----~~~Ptl~~~~~g~ 241 (285)
+.|.++ +|++|+.+...|+.+...|. -..+ .+ ..+.+..+- ..+|.+.+ +|+
T Consensus 3 vlYttsl~giR~t~~~C~~ak~iL~~~~V~~~-----e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~ 69 (147)
T cd03031 3 VLYTTSLRGVRKTFEDCNNVRAILESFRVKFD-----ERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGR 69 (147)
T ss_pred EEEEcCCcCCCCcChhHHHHHHHHHHCCCcEE-----EEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCE
Confidence 455566 89999999999988743332 2223 22 234444443 57887665 564
No 427
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=74.98 E-value=3.5 Score=34.06 Aligned_cols=56 Identities=7% Similarity=0.131 Sum_probs=43.3
Q ss_pred cccccccHHH---HHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 161 DRIELITRVM---LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 161 ~~v~~~~~~~---~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
..+..++++. +-++.+.++|.++.|.+-.|++-..-.+.|++++++|.+ .+.|..|
T Consensus 82 s~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-~adFl~V 140 (237)
T PF00837_consen 82 SPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-VADFLIV 140 (237)
T ss_pred CceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-hhheehh
Confidence 3444555554 556677899999999999999999989999999999986 3555555
No 428
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=74.64 E-value=5.7 Score=25.64 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=30.1
Q ss_pred EEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-------ChhHHhhhCCCCCCeEEE
Q psy159 78 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------DPRYARKWGVTKLPAVVY 131 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-------~~~l~~~~~i~~~Ptl~~ 131 (285)
.+|+.++|+.|.+..-.+.+..-. .....++ .+++.+.......|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~-----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID-----VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC-----ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 467888999999988777655322 3333332 233444445557898864
No 429
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=74.14 E-value=27 Score=24.41 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=38.8
Q ss_pred CCeE-EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcChHHHHhcCCcccCeEEEEeCCeE--EEEecCC
Q psy159 178 TQYL-AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNP--LIFEGEN 249 (285)
Q Consensus 178 ~~~~-~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~v~~~Ptl~~~~~g~~--~~y~g~~ 249 (285)
.+++ ++.|..+. ..|..+...+++++..-. ++.+-..+... ..|++.+..+|+. ++|.|--
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd--kI~~~~~~~~~--------~~P~~~i~~~~~~~gIrF~GiP 81 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD--KITLEEDNDDE--------RKPSFSINRPGEDTGIRFAGIP 81 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC--ceEEEEecCCC--------CCCEEEEecCCCcccEEEEecC
Confidence 3444 44555544 889999998888876533 45553222111 3699999888744 6888743
No 430
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=73.96 E-value=18 Score=23.99 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=39.7
Q ss_pred EEEEEECCCChhhHHHHHHHHHHHhhcCcCC--eEEEEE-cChHHHHhcCCcccCeEEE
Q psy159 181 LAVYFYKLNCNICDQILEGLEKVDDECDIYG--IHMVKI-QDPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 181 ~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~--i~~~~i-~~~~~~~~~~v~~~Ptl~~ 236 (285)
.+..|-+...+..+.....+.++-+++.+.. +.+..+ +++.+++.++|-..||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 3455666665666666666666666654433 666676 8999999999999999764
No 431
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=73.77 E-value=4.1 Score=25.55 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=29.7
Q ss_pred EEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEc---C-h-HHHHhcCCcccCeEEE
Q psy159 184 YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ---D-P-QLAKRYSIKTFPALVY 236 (285)
Q Consensus 184 ~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~---~-~-~~~~~~~v~~~Ptl~~ 236 (285)
.|+.++|+.|.++.-.++.....+. ...+. . . .+.+..+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLPYE-----LVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCCcE-----EEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 5677899999988877776644332 33331 1 1 2344456668897765
No 432
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=73.58 E-value=3.6 Score=29.46 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=17.2
Q ss_pred EEEeCCCChhHHHHHHHHHhH
Q psy159 78 VFFYETDHKDSVKVLERLEKI 98 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~ 98 (285)
..|+.|+|+.|++....+++-
T Consensus 2 ~iy~~~~C~~crka~~~L~~~ 22 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR 22 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 578899999999988777654
No 433
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=73.27 E-value=3.7 Score=29.24 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=17.6
Q ss_pred EEEeCCCChhHHHHHHHHHhH
Q psy159 78 VFFYETDHKDSVKVLERLEKI 98 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~ 98 (285)
..|+.++|+.|++....+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH 22 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 578999999999988777664
No 434
>PRK09301 circadian clock protein KaiB; Provisional
Probab=73.24 E-value=16 Score=25.96 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=54.0
Q ss_pred CcEEEEEeCCCChhHHHHHHHHHhHHhhc-CC-CCcEEEEeC-ChhHHhhhCCCCCCeEEEEccccceeecCCCchhHHH
Q psy159 74 EFVTVFFYETDHKDSVKVLERLEKIDGET-DN-MDITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEV 150 (285)
Q Consensus 74 ~~~lv~Fya~~c~~C~~~~~~~~~~a~~~-~~-~~v~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l 150 (285)
..++=+|.+...+..++....+.++-+.. .+ ..+.++.+. ++.+|..++|-..||++=-.++-..+.-|+.+..+.+
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDlsd~~kV 85 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDLSDREKV 85 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeecccccHHHH
Confidence 34566788888888888888887775555 33 234455544 8999999999999997654444446678888765333
No 435
>PRK09301 circadian clock protein KaiB; Provisional
Probab=72.97 E-value=25 Score=25.09 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=50.8
Q ss_pred eEEEEEECCCChhhHHHHHHHHHHHhhcCcC--CeEEEEE-cChHHHHhcCCcccCeEEEEeCCeEEEEecCCccchhH
Q psy159 180 YLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI-QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILKGT 255 (285)
Q Consensus 180 ~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i-~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g~~~~e~~~ 255 (285)
.++-.|.+...+..+.....+.++-+.+... .+.+..+ +++.+++.++|-..||++=....=.-+.-|++++.+..
T Consensus 7 ~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDlsd~~kV 85 (103)
T PRK09301 7 YILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDLSDREKV 85 (103)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeecccccHHHH
Confidence 3455566766666666666666665544332 3666666 89999999999999996654333223778998866654
No 436
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=72.96 E-value=4.1 Score=25.56 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=29.8
Q ss_pred EEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCC----h-hHHhhhCCCCCCeEEE
Q psy159 78 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD----P-RYARKWGVTKLPAVVY 131 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~----~-~l~~~~~i~~~Ptl~~ 131 (285)
-+|+.++|+.|.+..-.+....- .+....++. . .+-+..+-...|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i-----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL-----PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC-----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 36788999999988877765522 234444441 1 1334455667897754
No 437
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=72.92 E-value=17 Score=23.33 Aligned_cols=66 Identities=14% Similarity=0.241 Sum_probs=38.2
Q ss_pred EEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC----ChhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHHHH
Q psy159 78 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQW 153 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~~f 153 (285)
.+|+.++|+.|.+..-.+++.+ .......++ .+.+.+.......|++. .+|. ..+ .. ..|.+|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~g-----i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~-~l~----es-~aI~~y 68 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKG-----VSVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDL-VLY----ES-RIIMEY 68 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcC-----CccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCE-EEE----cH-HHHHHH
Confidence 5788899999999877765542 223343344 23444444556789774 2332 111 12 368888
Q ss_pred Hhh
Q psy159 154 LIT 156 (285)
Q Consensus 154 i~~ 156 (285)
+.+
T Consensus 69 L~~ 71 (73)
T cd03059 69 LDE 71 (73)
T ss_pred HHh
Confidence 765
No 438
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=72.33 E-value=27 Score=24.07 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=49.7
Q ss_pred EEEEEECCCChhhHHHHHHHHHHHhhcCcC--CeEEEEE-cChHHHHhcCCcccCeEEEEeCCeEEEEecCCccchhH
Q psy159 181 LAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI-QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILKGT 255 (285)
Q Consensus 181 ~~v~F~a~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i-~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g~~~~e~~~ 255 (285)
++-.|.+...+..+.....+.++-+.+... .+.+..+ +++.+++.++|-..||++=...+=.-+.-|++++.+..
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~rriiGdls~~~~v 82 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLSDRERV 82 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcceeeccccchHHH
Confidence 344556666666666666666665544332 3566666 89999999999999997654333223778888866554
No 439
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.12 E-value=6.3 Score=31.56 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=29.9
Q ss_pred hhHHhhhCCCCCCeEEEEccccceee-cCC-CchhHHHHHHHhhh
Q psy159 115 PRYARKWGVTKLPAVVYFRHRFPSIY-RGD-LSEEEEVLQWLITQ 157 (285)
Q Consensus 115 ~~l~~~~~i~~~Ptl~~~~~g~~~~y-~g~-~~~~~~l~~fi~~~ 157 (285)
..+++++|+.++||+++-++|++... .|. ....++++.++.+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~ 208 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQR 208 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHH
Confidence 56889999999999999999987443 231 22213677776654
No 440
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=71.33 E-value=26 Score=22.90 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=43.2
Q ss_pred EEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC----ChhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHHHHH
Q psy159 79 FFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 154 (285)
Q Consensus 79 ~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~~fi 154 (285)
++..++|+.|.+..-.++... ..+.+..++ ...+.+...-...|++. .+|.. .+ .+ ..|++|+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~-----i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~-l~----dS-~~I~~yL 67 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKG-----IPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEV-LT----DS-AAIIEYL 67 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHT-----EEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEE-EE----SH-HHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcC-----CeEEEeccCcccchhHHHhhcccccceEEE--ECCEE-Ee----CH-HHHHHHH
Confidence 467889999999887666552 234444544 34555556667799986 34543 22 23 3799999
Q ss_pred hhhcc
Q psy159 155 ITQKT 159 (285)
Q Consensus 155 ~~~~~ 159 (285)
.+...
T Consensus 68 ~~~~~ 72 (75)
T PF13417_consen 68 EERYP 72 (75)
T ss_dssp HHHST
T ss_pred HHHcC
Confidence 87654
No 441
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=70.99 E-value=12 Score=27.18 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=29.0
Q ss_pred HHHHHHHhHHhhcCCCCcEEEEeC-ChhHHhhhCCCCCCeEEEEcc
Q psy159 90 KVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVTKLPAVVYFRH 134 (285)
Q Consensus 90 ~~~~~~~~~a~~~~~~~v~~~~~~-~~~l~~~~~i~~~Ptl~~~~~ 134 (285)
.+.+.+..+.+.....+-. +.+. ++.+.++|+|+..|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~-~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC-PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC-cceeEChhHHhhCCceEcCEEEEEcC
Confidence 4555555554444221111 3333 899999999999999999877
No 442
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=70.51 E-value=20 Score=24.71 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=51.4
Q ss_pred cEEEEEeCCCChhHHHHHHHHHhHHhhc-CC-CCcEEEEeC-ChhHHhhhCCCCCCeEEEEccccceeecCCCchh
Q psy159 75 FVTVFFYETDHKDSVKVLERLEKIDGET-DN-MDITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEE 147 (285)
Q Consensus 75 ~~lv~Fya~~c~~C~~~~~~~~~~a~~~-~~-~~v~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~ 147 (285)
.++=+|.|...+.+.+....+.++-+.. .+ ..+.++.+. ++.+|..++|-..||++=-.++-..+.-|+.+..
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~rriiGdls~~ 79 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLSDR 79 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcceeeccccch
Confidence 3455677888888888888887775554 33 234455544 8999999999999997654444445677888765
No 443
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=70.01 E-value=18 Score=24.02 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=40.3
Q ss_pred EEEEEeCCCChhHHHHHHHHHhHHhhcCCCC--cEEEEeC-ChhHHhhhCCCCCCeEEE
Q psy159 76 VTVFFYETDHKDSVKVLERLEKIDGETDNMD--ITFVKMA-DPRYARKWGVTKLPAVVY 131 (285)
Q Consensus 76 ~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~--v~~~~~~-~~~l~~~~~i~~~Ptl~~ 131 (285)
.+-+|-+...+.+.+....+.++-+...+.. +.++.+. ++.++..++|-..||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 3556667776778888888877766663223 4555544 899999999999999764
No 444
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=69.92 E-value=4.6 Score=26.81 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=29.8
Q ss_pred EEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-c----ChHHHHhcCCcccCeEEE
Q psy159 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-Q----DPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~----~~~~~~~~~v~~~Ptl~~ 236 (285)
..++.++|+.|.++.-.+++..-.|. ...+ . .+++.+.-+-..+|+++.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~gi~y~-----~~~v~~~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELELDVI-----LYPCPKGSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcCCcEE-----EEECCCChHHHHHHHHhCCCCcccEEEe
Confidence 45677899999998877776644332 2333 1 223333334467898754
No 445
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=69.79 E-value=25 Score=22.61 Aligned_cols=48 Identities=13% Similarity=0.317 Sum_probs=30.5
Q ss_pred EEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC-------ChhHHhhhCCCCCCeEE
Q psy159 78 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------DPRYARKWGVTKLPAVV 130 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~-------~~~l~~~~~i~~~Ptl~ 130 (285)
.+|+.++|+.|.+..-.+++.+ ..+....++ .+++.+.......|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~g-----i~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALG-----LELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcC-----CCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 4688999999998776666553 233444443 24455544555789885
No 446
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=69.39 E-value=12 Score=24.15 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=30.2
Q ss_pred EEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE----cChHHHHhcCCcccCeEE
Q psy159 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----QDPQLAKRYSIKTFPALV 235 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----~~~~~~~~~~v~~~Ptl~ 235 (285)
..|+.++|+.|++..-.++..+-.+. ...+ ..+.+.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~~-----~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSVE-----IIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCccE-----EEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 35678899999998877766654433 2222 234444545556789764
No 447
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.13 E-value=4.8 Score=26.73 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.1
Q ss_pred EEEeCCCChhHHHHHHHHHhHH
Q psy159 78 VFFYETDHKDSVKVLERLEKID 99 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~a 99 (285)
++|++..|+.|..+...++++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~ 26 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN 26 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC
Confidence 6899999999999888887763
No 448
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=68.33 E-value=5.4 Score=29.84 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=19.6
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhh
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDE 206 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~ 206 (285)
+..|+.++|+.|++....+++....
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~ 26 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIP 26 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCC
Confidence 4567899999999998888766433
No 449
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=67.45 E-value=4.8 Score=29.08 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=18.2
Q ss_pred EEEECCCChhhHHHHHHHHHHH
Q psy159 183 VYFYKLNCNICDQILEGLEKVD 204 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la 204 (285)
..|+.++|+.|++....+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~ 23 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHG 23 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcC
Confidence 4678899999999988887754
No 450
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=66.64 E-value=33 Score=22.35 Aligned_cols=71 Identities=11% Similarity=0.014 Sum_probs=39.9
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCC---hhHHhhhCCCCCCeEEEEccc-cceeecCCCchhHHHHH
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD---PRYARKWGVTKLPAVVYFRHR-FPSIYRGDLSEEEEVLQ 152 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~---~~l~~~~~i~~~Ptl~~~~~g-~~~~y~g~~~~~~~l~~ 152 (285)
+.+|+.+.|+.|++..-.+.+. +.......++. .++ +.-+-...|++..-..| ....++ + ..|++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~e----S-~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLVD----S-SVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEEc----H-HHHHH
Confidence 3578889999999988666554 22233444441 122 23344568987653211 112221 2 37888
Q ss_pred HHhhhc
Q psy159 153 WLITQK 158 (285)
Q Consensus 153 fi~~~~ 158 (285)
|+.+.+
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 887654
No 451
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.89 E-value=99 Score=27.59 Aligned_cols=153 Identities=14% Similarity=0.209 Sum_probs=92.0
Q ss_pred CcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhCCCCCCeEEEEccccc--eeecCCCchhHHHH
Q psy159 74 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFP--SIYRGDLSEEEEVL 151 (285)
Q Consensus 74 ~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~--~~y~g~~~~~~~l~ 151 (285)
.++.+.-.......++++..-++++|..-+. +.+-..+ ....-|++.+-+.|.. ++|.|-..-. ++.
T Consensus 19 ~~i~l~asldds~~s~~~~~ll~eia~~S~k--is~~~~~--------~~~RkpSF~i~r~g~~~gv~FAglPlGH-Eft 87 (520)
T COG3634 19 QPIELVASLDDSEKSKEIKELLDEIASLSDK--ISLEEDS--------DLVRKPSFSINRPGEDQGVRFAGLPLGH-EFT 87 (520)
T ss_pred CCeEEEEecCcccccHHHHHHHHHHHhhccc--eeeeecC--------ccccCCceeecCCCcccceEEecCcccc-hHH
Confidence 4454555556677788898888888765532 2222211 2456789888888754 7788855443 577
Q ss_pred HHHhhhccccccc-cccHHHHHHHHH-hCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE---cChHHHHhc
Q psy159 152 QWLITQKTEDRIE-LITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRY 226 (285)
Q Consensus 152 ~fi~~~~~~~~v~-~~~~~~~~~~~~-~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~ 226 (285)
+++...+.-+... .+.++-++.+.+ +...-+--|++-.|..|-.+...+.-++-- .. +|.-..+ -..+-.+.-
T Consensus 88 SlVLaLlqv~G~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvl-Np-~I~H~~IdGa~Fq~Evear 165 (520)
T COG3634 88 SLVLALLQVGGHPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVL-NP-RIKHTAIDGALFQDEVEAR 165 (520)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhc-CC-CceeEEecchhhHhHHHhc
Confidence 7766555422221 223333444332 244456667888999998888777755533 32 4655555 233334556
Q ss_pred CCcccCeEEEEeCCe
Q psy159 227 SIKTFPALVYFRNGN 241 (285)
Q Consensus 227 ~v~~~Ptl~~~~~g~ 241 (285)
+|.++||+.+ ||+
T Consensus 166 ~IMaVPtvfl--nGe 178 (520)
T COG3634 166 NIMAVPTVFL--NGE 178 (520)
T ss_pred cceecceEEE--cch
Confidence 8999999765 675
No 452
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=65.60 E-value=8.1 Score=28.89 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=17.5
Q ss_pred EEEEeCCCChhHHHHHHHHHhH
Q psy159 77 TVFFYETDHKDSVKVLERLEKI 98 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~ 98 (285)
+..|+.|+|+.|++....+++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4578899999999987666554
No 453
>PRK12559 transcriptional regulator Spx; Provisional
Probab=65.46 E-value=6.1 Score=29.59 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=19.7
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhh
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDE 206 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~ 206 (285)
+..|+.++|+.|++....+++....
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~ 26 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQID 26 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCC
Confidence 4578899999999998877766433
No 454
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=65.12 E-value=4.1 Score=29.48 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=17.2
Q ss_pred EEEeCCCChhHHHHHHHHHhH
Q psy159 78 VFFYETDHKDSVKVLERLEKI 98 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~ 98 (285)
..|..++|+.|++....+++-
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH 22 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 468899999999988777654
No 455
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=64.51 E-value=13 Score=27.84 Aligned_cols=23 Identities=26% Similarity=0.683 Sum_probs=21.0
Q ss_pred ChhHHhhhCCCCCCeEEEEcccc
Q psy159 114 DPRYARKWGVTKLPAVVYFRHRF 136 (285)
Q Consensus 114 ~~~l~~~~~i~~~Ptl~~~~~g~ 136 (285)
++.+.++|+|+..|++++.+++.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCC
Confidence 89999999999999999998763
No 456
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=63.63 E-value=20 Score=23.48 Aligned_cols=50 Identities=18% Similarity=0.259 Sum_probs=29.8
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEc---ChHHHHhcCCcccCeEEEE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ---DPQLAKRYSIKTFPALVYF 237 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~---~~~~~~~~~v~~~Ptl~~~ 237 (285)
+..|+.+.|+.|+++.-.+....-.+. ...++ ...+ +.-+-..+|++..=
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~-----~~~~~~~~~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYE-----VVEVNPVSRKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceE-----EEECCchhHHHH-HHhCCCccCEEEEC
Confidence 346778899999999877766643332 22221 1222 23344678988753
No 457
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=63.60 E-value=7.6 Score=28.19 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=18.7
Q ss_pred EEEEECCCChhhHHHHHHHHHHH
Q psy159 182 AVYFYKLNCNICDQILEGLEKVD 204 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la 204 (285)
+..|+.++|+.|++....+++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~g 24 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQ 24 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC
Confidence 34678899999999988887764
No 458
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=61.60 E-value=7 Score=28.49 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=17.6
Q ss_pred EEEECCCChhhHHHHHHHHHH
Q psy159 183 VYFYKLNCNICDQILEGLEKV 203 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~l 203 (285)
..|+.++|+.|++....+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN 22 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 357899999999998888775
No 459
>PRK12559 transcriptional regulator Spx; Provisional
Probab=60.84 E-value=11 Score=28.15 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=17.6
Q ss_pred EEEEeCCCChhHHHHHHHHHhH
Q psy159 77 TVFFYETDHKDSVKVLERLEKI 98 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~ 98 (285)
+..|+.|+|+.|++....+++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4678899999999987666554
No 460
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=60.57 E-value=34 Score=21.88 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=34.6
Q ss_pred EEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCC---hhHHhhhCCCCCCeEEEEccccceeecCCCchhHHHHHHHh
Q psy159 79 FFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD---PRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLI 155 (285)
Q Consensus 79 ~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~---~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~l~~fi~ 155 (285)
+++.++|++|.+..-.+... +..+....++. ....+..+-...|++.. .+|.. ......|.+|+.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~------l~es~aI~~yL~ 70 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----NIPVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF------MAESLDIVAFID 70 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----CCCeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE------eehHHHHHHHHh
Confidence 57788999999888777654 22233334441 12222233345787643 22321 112236777765
No 461
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=59.07 E-value=17 Score=28.69 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=27.8
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEE
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFV 110 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~ 110 (285)
+.+|++.-|++|-...+.++++.+.+.+..+..-
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~ 35 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWR 35 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence 6789999999999999999999988844444443
No 462
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=59.04 E-value=17 Score=29.24 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=23.3
Q ss_pred hHHHHhcCCcccCeEEEEeCCeEEEEe
Q psy159 220 PQLAKRYSIKTFPALVYFRNGNPLIFE 246 (285)
Q Consensus 220 ~~~~~~~~v~~~Ptl~~~~~g~~~~y~ 246 (285)
..+++++++.+|||+++-+||+.....
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~ 190 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLG 190 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEecc
Confidence 568999999999999999999977443
No 463
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=58.74 E-value=10 Score=27.58 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=17.2
Q ss_pred EEEeCCCChhHHHHHHHHHhH
Q psy159 78 VFFYETDHKDSVKVLERLEKI 98 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~ 98 (285)
..|+.++|+.|++....+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN 22 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 468899999999988777663
No 464
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=58.48 E-value=29 Score=27.26 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=23.6
Q ss_pred cCCcEEEEEeCCCCh-hHHHHHHHHHhHHhhc
Q psy159 72 ENEFVTVFFYETDHK-DSVKVLERLEKIDGET 102 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~-~C~~~~~~~~~~a~~~ 102 (285)
.++.++|.|.-..|+ .|-.....+.++.+.+
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l 82 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQL 82 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 568888888778885 5988888888877666
No 465
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=58.13 E-value=56 Score=22.17 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=32.0
Q ss_pred EEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeC----ChhHHhhhCCCCCCeEEE
Q psy159 76 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVY 131 (285)
Q Consensus 76 ~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~----~~~l~~~~~i~~~Ptl~~ 131 (285)
.+.+|+.+.|+.|.+..-.+.+. +..+....++ ...+.+.......|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~-----gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAK-----NIPHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHc-----CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 35677888999999877666554 3334445444 233444455567898864
No 466
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=57.98 E-value=69 Score=23.12 Aligned_cols=100 Identities=19% Similarity=0.320 Sum_probs=63.8
Q ss_pred eeecChhHHHHHHhc--CCcEEEEEeCCCChhHHHHHHHHHhHHhhc-CCCCcEEEEeC---ChhH----HhhhCCC-CC
Q psy159 58 IEEVNRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGET-DNMDITFVKMA---DPRY----ARKWGVT-KL 126 (285)
Q Consensus 58 v~~l~~~~f~~~~~~--~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~-~~~~v~~~~~~---~~~l----~~~~~i~-~~ 126 (285)
+..++.+++-.+-.. ....+|.|-.+..+...+|.+.+.++|+.. ++.+..++.+| -+-+ -+-|+|. .-
T Consensus 3 lrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~ 82 (120)
T cd03074 3 LRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFR 82 (120)
T ss_pred hhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCC
Confidence 445555554333222 355678888888889999999999999999 55668888887 2222 2447775 35
Q ss_pred CeEEEEccc--cc--eeecCC--CchhHHHHHHHhhh
Q psy159 127 PAVVYFRHR--FP--SIYRGD--LSEEEEVLQWLITQ 157 (285)
Q Consensus 127 Ptl~~~~~g--~~--~~y~g~--~~~~~~l~~fi~~~ 157 (285)
|.|-+..-. .. ....+. ....++|.+|+.+.
T Consensus 83 PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 83 PQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred CceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 888776531 11 333332 23334788888753
No 467
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=56.99 E-value=15 Score=26.70 Aligned_cols=22 Identities=14% Similarity=0.139 Sum_probs=17.6
Q ss_pred EEEEeCCCChhHHHHHHHHHhH
Q psy159 77 TVFFYETDHKDSVKVLERLEKI 98 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~ 98 (285)
+..|+.++|+.|++....+++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~ 23 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH 23 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 3468889999999988777664
No 468
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=56.53 E-value=12 Score=27.39 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=21.9
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcC
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECD 208 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~ 208 (285)
+..|+.|.|+.|++....+++...++.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~~~ 29 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIEYT 29 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcE
Confidence 456889999999999988887765544
No 469
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=55.94 E-value=18 Score=23.20 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=29.7
Q ss_pred EEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--cChHHHHhcCCcccCeEEE
Q psy159 184 YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 184 ~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~v~~~Ptl~~ 236 (285)
.|+.+.|+.|.++.-.++.....+....+.+..- ..+.+.+......+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 5678899999988877776654443211111000 1233444444557898864
No 470
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=55.35 E-value=27 Score=27.41 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=28.6
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 217 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 217 (285)
+.+|++..|++|....+.+.++.+.+.+..+.+.-+
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 578899999999999999999999985334444444
No 471
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=55.23 E-value=23 Score=29.37 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCChhHHHHHHHHHhHHhhcC
Q psy159 74 EFVTVFFYETDHKDSVKVLERLEKIDGETD 103 (285)
Q Consensus 74 ~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~ 103 (285)
+..++.|+...|++|++..|.+.+.....+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 567899999999999988888887433333
No 472
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=55.10 E-value=13 Score=27.89 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=18.1
Q ss_pred EEEEECCCChhhHHHHHHHHHHH
Q psy159 182 AVYFYKLNCNICDQILEGLEKVD 204 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la 204 (285)
+..|+.++|+.|++....+++-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~ 24 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQ 24 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcC
Confidence 35678899999999887777653
No 473
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=55.08 E-value=14 Score=26.89 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=18.7
Q ss_pred EEEECCCChhhHHHHHHHHHHHhh
Q psy159 183 VYFYKLNCNICDQILEGLEKVDDE 206 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la~~ 206 (285)
..|+.|.|+.|++....+++-...
T Consensus 3 ~iy~~p~C~~crkA~~~L~~~gi~ 26 (113)
T cd03033 3 IFYEKPGCANNARQKALLEAAGHE 26 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCC
Confidence 467899999999988877766433
No 474
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=54.31 E-value=26 Score=23.90 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=31.4
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE----cChHHHHhcCCcccCeEEE
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----QDPQLAKRYSIKTFPALVY 236 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----~~~~~~~~~~v~~~Ptl~~ 236 (285)
+..++.+.|+.|+++.-.++...-.|. +..+ ..+.+.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~~~-----~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIPHE-----VININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCCCe-----EEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 455678899999988777766644433 3333 2233555555667898864
No 475
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=54.04 E-value=68 Score=26.03 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=34.7
Q ss_pred cCCcEEEEEeCCCCh-hHHHHHHHHHhHHhhcC-C--CC--cEEEEeC----ChhHHhhhCC
Q psy159 72 ENEFVTVFFYETDHK-DSVKVLERLEKIDGETD-N--MD--ITFVKMA----DPRYARKWGV 123 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~-~C~~~~~~~~~~a~~~~-~--~~--v~~~~~~----~~~l~~~~~i 123 (285)
.+++++|.|.=..|+ -|--....+.++-+++. . .+ +.++.+| .++..++|..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 678888888767776 48888877777766664 2 22 4555666 4555666655
No 476
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=52.64 E-value=77 Score=22.06 Aligned_cols=79 Identities=9% Similarity=0.029 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcChHHHHhcCCcccCeEEEEeC-Ce-EEEE
Q psy159 168 RVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN-GN-PLIF 245 (285)
Q Consensus 168 ~~~~~~~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~v~~~Ptl~~~~~-g~-~~~y 245 (285)
.+++..+-.+++.++.+|-...... ...|+++|..+++ +..|..--.... ......+-|.|++-.+ .. ...|
T Consensus 7 ~~eL~~id~~kr~iIgYF~~~~~~e----Y~~f~kvA~~lr~-dC~F~v~~G~~~-~~~~~~~~~~i~frp~~~~~~~~y 80 (91)
T cd03070 7 LDELNNVDRSKRNIIGYFESKDSDE----YDNFRKVANILRD-DCSFLVGFGDVT-KPERPPGDNIIYFPPGHNAPDMVY 80 (91)
T ss_pred HHHHHhhCcCCceEEEEEcCCCChh----HHHHHHHHHHHhh-cCeEEEEecccc-ccccCCCCCeEEECCCCCCCceEE
Confidence 3445443334556666665655443 4667778888886 454443311111 2223344455554443 22 2589
Q ss_pred ecCCccc
Q psy159 246 EGENKIL 252 (285)
Q Consensus 246 ~g~~~~e 252 (285)
.|++++-
T Consensus 81 ~G~~tn~ 87 (91)
T cd03070 81 LGSLTNF 87 (91)
T ss_pred ccCCCCh
Confidence 9998753
No 477
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=52.04 E-value=41 Score=25.40 Aligned_cols=73 Identities=22% Similarity=0.338 Sum_probs=42.7
Q ss_pred EEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-cChHHHHhcCCcc----cCeEEEEeCCeEEEEecCCccchhH
Q psy159 181 LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKRYSIKT----FPALVYFRNGNPLIFEGENKILKGT 255 (285)
Q Consensus 181 ~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~~~v~~----~Ptl~~~~~g~~~~y~g~~~~e~~~ 255 (285)
-++.+++|.|+=|..-...++.. ++.++.... +...+-++++|.- ==|.++ +|. ..+|-... +.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~-----Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy--~vEGHVPa--~a 95 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKAN-----GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY--YVEGHVPA--EA 95 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhC-----CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE--EEeccCCH--HH
Confidence 46778999999998776666522 333444444 4556677788851 123333 564 34565542 22
Q ss_pred HHHHhhhcCC
Q psy159 256 YIGTYISTKA 265 (285)
Q Consensus 256 ~~~~~~~~~~ 265 (285)
+.+++.+..
T Consensus 96 -I~~ll~~~p 104 (149)
T COG3019 96 -IARLLAEKP 104 (149)
T ss_pred -HHHHHhCCC
Confidence 677776544
No 478
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=50.62 E-value=20 Score=26.78 Aligned_cols=21 Identities=10% Similarity=0.049 Sum_probs=16.4
Q ss_pred EEEEeCCCChhHHHHHHHHHh
Q psy159 77 TVFFYETDHKDSVKVLERLEK 97 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~ 97 (285)
+..|+.|+|+.|++....+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 357888999999997766654
No 479
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=48.93 E-value=1.1e+02 Score=22.86 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=48.6
Q ss_pred HHHHHHhhhcccc-ccccccHHHHHHHHHhCCeEEEEEECCCChhhHH--HHHHHHHHHh-hcCcCCeEEEEE---cChH
Q psy159 149 EVLQWLITQKTED-RIELITRVMLETMVEETQYLAVYFYKLNCNICDQ--ILEGLEKVDD-ECDIYGIHMVKI---QDPQ 221 (285)
Q Consensus 149 ~l~~fi~~~~~~~-~v~~~~~~~~~~~~~~~~~~~v~F~a~~c~~c~~--~~~~~~~la~-~~~~~~i~~~~i---~~~~ 221 (285)
++++=+.+.+... .-+..+.++.++.+++.+...+.+-.+-|| |.. .+|.....-. ..+. =.++++ .+.+
T Consensus 4 ~lV~pmR~ELt~~Gf~eL~T~e~Vd~~~~~~~GTtlVvVNSVCG-CAag~ARPa~~~al~~~kkP--D~lvTVFAGqDkE 80 (136)
T PF06491_consen 4 ELVQPMREELTRAGFEELTTAEEVDEALKNKEGTTLVVVNSVCG-CAAGNARPAAAMALQNDKKP--DHLVTVFAGQDKE 80 (136)
T ss_dssp HHCHHHHHHHHTTT-EE--SHHHHHHHHHH--SEEEEEEE-SSH-HHHHTHHHHHHHHHHHSS----SEEEEEETTTSHH
T ss_pred HHHHHHHHHHHHcCccccCCHHHHHHHHhCCCCcEEEEEecccc-ccccccCHHHHHHHhCCCCC--CceEEeccCCCHH
Confidence 3444455544443 445557888999988544444444566887 433 5565543322 2222 345555 2222
Q ss_pred ---HHHhcC---CcccCeEEEEeCCeEEEEe
Q psy159 222 ---LAKRYS---IKTFPALVYFRNGNPLIFE 246 (285)
Q Consensus 222 ---~~~~~~---v~~~Ptl~~~~~g~~~~y~ 246 (285)
-++.|= -.+-|++.+||+|+.+.+-
T Consensus 81 At~~aR~yf~~~pPSSPS~ALfKdGelvh~i 111 (136)
T PF06491_consen 81 ATAKAREYFEPYPPSSPSIALFKDGELVHFI 111 (136)
T ss_dssp HHHHHHHTSTTS---SSEEEEEETTEEEEEE
T ss_pred HHHHHHHhcCCCCCCCchheeeeCCEEEEEe
Confidence 233331 1356899999999988664
No 480
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=48.49 E-value=81 Score=25.58 Aligned_cols=36 Identities=33% Similarity=0.531 Sum_probs=26.6
Q ss_pred cChHHHHhcCCcccCeEEEEeCCeEEEEecCCccch
Q psy159 218 QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILK 253 (285)
Q Consensus 218 ~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g~~~~e~ 253 (285)
-+|.+.++|+|+.+|++++.-.+..-+-.|+.+-++
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~~yD~I~GNIsl~~ 185 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQ 185 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCCCCCEEEecccHHH
Confidence 389999999999999999975433225567776443
No 481
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=47.38 E-value=42 Score=21.88 Aligned_cols=52 Identities=12% Similarity=0.228 Sum_probs=31.3
Q ss_pred EEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE-------cChHHHHhcCCcccCeEEEEeCCe
Q psy159 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-------QDPQLAKRYSIKTFPALVYFRNGN 241 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------~~~~~~~~~~v~~~Ptl~~~~~g~ 241 (285)
..|+.+.|..|+++.-.++++...+. +..+ ..+++.+.-....+|++. .+|.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~~e-----~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLRCE-----EYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCCCE-----EEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCE
Confidence 45677888889888766666654433 3333 223455545556789885 3554
No 482
>KOG2792|consensus
Probab=47.31 E-value=1.2e+02 Score=25.54 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCCChh-HHHHHHHHHhHHhhc-CCCCc----EEEEeC
Q psy159 73 NEFVTVFFYETDHKD-SVKVLERLEKIDGET-DNMDI----TFVKMA 113 (285)
Q Consensus 73 ~~~~lv~Fya~~c~~-C~~~~~~~~~~a~~~-~~~~v----~~~~~~ 113 (285)
++-.|++|-=+.|+. |-.-...+.++-+++ ...++ .|+.+|
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD 185 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD 185 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC
Confidence 355667787778875 755555554444444 22222 466666
No 483
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=47.03 E-value=78 Score=20.51 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=40.3
Q ss_pred EEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE----cChHHHHhcCCcccCeEEEEeCCeEEEEecCCccchhHHHHH
Q psy159 184 YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILKGTYIGT 259 (285)
Q Consensus 184 ~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----~~~~~~~~~~v~~~Ptl~~~~~g~~~~y~g~~~~e~~~~~~~ 259 (285)
+++.++|+.|+++.-.++...- ...+..+ ....+.+...-..+|+|. .+|..+ + +-..++.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i-----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l-~------dS~~I~~y 66 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI-----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL-T------DSAAIIEY 66 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE-----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE-E------SHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC-----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE-e------CHHHHHHH
Confidence 3577899999998766665532 2334444 235566666667899987 556532 1 23345666
Q ss_pred hhhc
Q psy159 260 YIST 263 (285)
Q Consensus 260 ~~~~ 263 (285)
+.+.
T Consensus 67 L~~~ 70 (75)
T PF13417_consen 67 LEER 70 (75)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 484
>KOG2507|consensus
Probab=46.99 E-value=1.1e+02 Score=27.68 Aligned_cols=87 Identities=10% Similarity=0.174 Sum_probs=54.0
Q ss_pred cCCcEEEEEeCCCChhHHHHH-HHHHh-HHhhcCCCCcEEEEeC-----ChhHHhhhCCCCCCeEEEEcc-ccce-eecC
Q psy159 72 ENEFVTVFFYETDHKDSVKVL-ERLEK-IDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFRH-RFPS-IYRG 142 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~-~~~~~-~a~~~~~~~v~~~~~~-----~~~l~~~~~i~~~Ptl~~~~~-g~~~-~y~g 142 (285)
.++.++|-|-+-......+|. -.|.. .....-...++.++++ ...++.-|-+-..|+++++-. |.+. ...|
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg 96 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITG 96 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeec
Confidence 346677888877777777777 34433 2222211126666666 344555677788899988864 7774 4566
Q ss_pred CCchhHHHHHHHhhhcc
Q psy159 143 DLSEEEEVLQWLITQKT 159 (285)
Q Consensus 143 ~~~~~~~l~~fi~~~~~ 159 (285)
.... ++|..-|.+...
T Consensus 97 ~v~a-deL~~~i~Kv~~ 112 (506)
T KOG2507|consen 97 FVTA-DELASSIEKVWL 112 (506)
T ss_pred cccH-HHHHHHHHHHHH
Confidence 6665 478877776543
No 485
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=45.86 E-value=63 Score=27.16 Aligned_cols=61 Identities=8% Similarity=0.065 Sum_probs=36.6
Q ss_pred HHHhCCeEEEEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEEcChHHHHhcCCcccCeEEEEeC
Q psy159 174 MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN 239 (285)
Q Consensus 174 ~~~~~~~~~v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~v~~~Ptl~~~~~ 239 (285)
+...+++.+++..+.||+.|...+-.+-.+-..|. ++.+... ..+..+ .-...|++++...
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG--n~~l~~~-~S~~~d--~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFG--NFSLEYH-YSDPYD--NYPNTPTLIFNNY 114 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcC--CeeeEEe-ecCccc--CCCCCCeEEEecC
Confidence 34568899999999999999876544443333343 2333332 111111 2257899988754
No 486
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=45.59 E-value=42 Score=27.82 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=33.8
Q ss_pred cCCcEEEEEeCCCChhHHHHHHHHHhHHhhc--CCC-CcEEEEeC
Q psy159 72 ENEFVTVFFYETDHKDSVKVLERLEKIDGET--DNM-DITFVKMA 113 (285)
Q Consensus 72 ~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~--~~~-~v~~~~~~ 113 (285)
.+..++|.+...+|..|..-+..++.|..++ .+. +|.|+.|+
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN 69 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVN 69 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEc
Confidence 3567888999999999999999999988777 333 58888877
No 487
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=45.57 E-value=29 Score=25.14 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=16.9
Q ss_pred EEEEeCCCChhHHHHHHHHHhH
Q psy159 77 TVFFYETDHKDSVKVLERLEKI 98 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~ 98 (285)
+..|..|.|+.|++....+++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 3578899999999877666543
No 488
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=45.56 E-value=26 Score=27.63 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=23.8
Q ss_pred EEEEECCCChhhHHHHHHHHHHHhhcC
Q psy159 182 AVYFYKLNCNICDQILEGLEKVDDECD 208 (285)
Q Consensus 182 ~v~F~a~~c~~c~~~~~~~~~la~~~~ 208 (285)
+.+|+.+.|+.|-...+.++++.+++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 457889999999999999999999884
No 489
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=44.25 E-value=75 Score=24.89 Aligned_cols=50 Identities=22% Similarity=0.547 Sum_probs=31.1
Q ss_pred hCCeEEEEEECCCCh-hhHHHHHHHHHHHhhcCc--CCeEEEEE------cChHHHHhc
Q psy159 177 ETQYLAVYFYKLNCN-ICDQILEGLEKVDDECDI--YGIHMVKI------QDPQLAKRY 226 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~-~c~~~~~~~~~la~~~~~--~~i~~~~i------~~~~~~~~~ 226 (285)
.++.++|.|.-..|+ .|-.....+.++.+++.. .++.+..| +.++..++|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 468888999888885 688766666655554442 25777777 445555555
No 490
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=43.50 E-value=21 Score=28.15 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=23.8
Q ss_pred EEEEeCCCChhHHHHHHHHHhHHhhc
Q psy159 77 TVFFYETDHKDSVKVLERLEKIDGET 102 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~a~~~ 102 (285)
+.+|+.+.|+.|-...+.++++.+.+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh
Confidence 56899999999999999999999887
No 491
>COG1550 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.61 E-value=75 Score=22.14 Aligned_cols=46 Identities=7% Similarity=0.007 Sum_probs=35.8
Q ss_pred EEEeCCCChhHHHHHHHHHhHHhhc-CCCCcEEEEeCChhHHhhhCC
Q psy159 78 VFFYETDHKDSVKVLERLEKIDGET-DNMDITFVKMADPRYARKWGV 123 (285)
Q Consensus 78 v~Fya~~c~~C~~~~~~~~~~a~~~-~~~~v~~~~~~~~~l~~~~~i 123 (285)
+.+..+||..-|+-...++.+-..+ ++.|+.++.++..++.++.+|
T Consensus 8 ~~l~~~~v~sLKeKRavlr~iv~rLk~KFnvSvaE~~~qD~~qr~~I 54 (95)
T COG1550 8 CELRLYDVRSLKEKRAVLRPIVTRLKNKFNVSVAETGYQDLWQRAEI 54 (95)
T ss_pred EEEEecccccHHHHHHHHHHHHHHHHHhcceeeeecCchhhhhhhee
Confidence 5567789988877766777666666 566799999999999888654
No 492
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=41.37 E-value=36 Score=24.93 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=17.9
Q ss_pred EEEEeCCCChhHHHHHHHHHhH
Q psy159 77 TVFFYETDHKDSVKVLERLEKI 98 (285)
Q Consensus 77 lv~Fya~~c~~C~~~~~~~~~~ 98 (285)
+..|+.|.|+.|++....+++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4678899999999988777654
No 493
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.68 E-value=64 Score=26.62 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=17.2
Q ss_pred CeEEEEEECCCChhhHHHHHHHHHHHhh
Q psy159 179 QYLAVYFYKLNCNICDQILEGLEKVDDE 206 (285)
Q Consensus 179 ~~~~v~F~a~~c~~c~~~~~~~~~la~~ 206 (285)
+..++.|....|++|+...+.+.+....
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~ 112 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYID 112 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhh
Confidence 4456666777777776666666654333
No 494
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=40.61 E-value=76 Score=26.65 Aligned_cols=60 Identities=8% Similarity=0.026 Sum_probs=35.0
Q ss_pred HHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCCCCcEEEEeCChhHHhhhC-CCCCCeEEEEcc
Q psy159 69 LLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWG-VTKLPAVVYFRH 134 (285)
Q Consensus 69 ~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~~~v~~~~~~~~~l~~~~~-i~~~Ptl~~~~~ 134 (285)
+...+++.+++.-+.||+.|....=.+-.+-..++..++.....+. .. --..|+|++...
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~------~d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP------YDNYPNTPTLIFNNY 114 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc------ccCCCCCCeEEEecC
Confidence 4467889999999999999975443333333444433222222221 22 245899887643
No 495
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=40.37 E-value=51 Score=21.28 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=29.5
Q ss_pred EEEECCCChhhHHHHHHHHHHHhhcCcCCeEEEEE--cChHHHHhcCCcccCeEE
Q psy159 183 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPALV 235 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~v~~~Ptl~ 235 (285)
..|+.+.|+.|+++.-.++.....+....+.+... ..+.+.+......+|++.
T Consensus 3 ~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 3 KLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred EEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 45567779999888877776654433100111100 123455555666789875
No 496
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=39.84 E-value=26 Score=25.42 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=18.0
Q ss_pred EEEECCCChhhHHHHHHHHHHH
Q psy159 183 VYFYKLNCNICDQILEGLEKVD 204 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la 204 (285)
..|+.|.|+.|++....+++..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~~ 23 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDKG 23 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHCC
Confidence 4678999999999988777653
No 497
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=38.99 E-value=27 Score=25.19 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=17.7
Q ss_pred EEEECCCChhhHHHHHHHHHHH
Q psy159 183 VYFYKLNCNICDQILEGLEKVD 204 (285)
Q Consensus 183 v~F~a~~c~~c~~~~~~~~~la 204 (285)
..|+.+.|+.|++....+++..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~~ 23 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEAG 23 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHCC
Confidence 4678899999999887777653
No 498
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=38.75 E-value=19 Score=24.53 Aligned_cols=53 Identities=13% Similarity=0.254 Sum_probs=38.1
Q ss_pred EEeCCCChhHHHHHHHHHhHHhhcCCCC--cEEEEeC-ChhHHhhhCCCCCCeEEE
Q psy159 79 FFYETDHKDSVKVLERLEKIDGETDNMD--ITFVKMA-DPRYARKWGVTKLPAVVY 131 (285)
Q Consensus 79 ~Fya~~c~~C~~~~~~~~~~a~~~~~~~--v~~~~~~-~~~l~~~~~i~~~Ptl~~ 131 (285)
+|-+.....+.+....+..+.....+.. +.++.+. ++.+|..++|-..||++-
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 3555566677888888888877653333 4455544 899999999999999863
No 499
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=37.57 E-value=59 Score=27.02 Aligned_cols=61 Identities=8% Similarity=0.131 Sum_probs=44.6
Q ss_pred ccccceeecChhH---HHHHHhcCCcEEEEEeCCCChhHHHHHHHHHhHHhhcCC-CCcEEEEeC
Q psy159 53 EIKNEIEEVNRRM---LDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA 113 (285)
Q Consensus 53 ~~~~~v~~l~~~~---f~~~~~~~~~~lv~Fya~~c~~C~~~~~~~~~~a~~~~~-~~v~~~~~~ 113 (285)
++...|..++... +-++.+.+.|.++.|-+--|+.-..-...++++++.+.+ .++.++.+.
T Consensus 79 APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~ 143 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIE 143 (237)
T ss_pred CCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHh
Confidence 3344577777655 555667889999999998999988889999999998844 234444443
No 500
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=36.36 E-value=2.3e+02 Score=22.97 Aligned_cols=61 Identities=20% Similarity=0.338 Sum_probs=39.8
Q ss_pred hCCeEEEEEECCCCh-hhHHHHHHHHHHHhhcC-c--CCeEEEEE------cChHHHHhcCC-cccCeEEEE
Q psy159 177 ETQYLAVYFYKLNCN-ICDQILEGLEKVDDECD-I--YGIHMVKI------QDPQLAKRYSI-KTFPALVYF 237 (285)
Q Consensus 177 ~~~~~~v~F~a~~c~-~c~~~~~~~~~la~~~~-~--~~i~~~~i------~~~~~~~~~~v-~~~Ptl~~~ 237 (285)
.+++++|.|.=..|+ -|......+..+-+++. . .++.++.+ +.++..++|.. .-.|.....
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~l 137 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGL 137 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeee
Confidence 578888988766775 69887777776666655 2 24555555 56777778866 334444443
Done!