Query psy1590
Match_columns 365
No_of_seqs 160 out of 1425
Neff 7.3
Searched_HMMs 46136
Date Sat Aug 17 00:29:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03557 zinc transporter ZitB 100.0 3.8E-50 8.3E-55 388.2 37.6 272 4-330 16-294 (312)
2 COG0053 MMT1 Predicted Co/Zn/C 100.0 5.1E-50 1.1E-54 384.9 32.6 275 6-333 12-295 (304)
3 COG1230 CzcD Co/Zn/Cd efflux s 100.0 1.8E-49 4E-54 374.3 33.5 271 4-329 19-295 (296)
4 PRK09509 fieF ferrous iron eff 100.0 8.2E-49 1.8E-53 377.1 32.3 271 6-329 10-288 (299)
5 TIGR01297 CDF cation diffusion 100.0 1.2E-44 2.6E-49 342.3 28.2 257 19-328 2-268 (268)
6 KOG1483|consensus 100.0 3.1E-44 6.7E-49 342.7 18.0 284 4-329 6-371 (404)
7 PF01545 Cation_efflux: Cation 100.0 5.9E-44 1.3E-48 340.0 12.5 271 9-330 1-283 (284)
8 KOG1482|consensus 100.0 2.9E-39 6.4E-44 307.6 23.0 283 6-333 72-371 (379)
9 KOG1484|consensus 100.0 2.6E-38 5.7E-43 297.0 27.6 282 4-329 32-348 (354)
10 KOG1485|consensus 100.0 3.5E-34 7.6E-39 277.4 25.4 273 5-332 113-404 (412)
11 COG3965 Predicted Co/Zn/Cd cat 100.0 4E-28 8.8E-33 220.4 21.2 277 4-326 17-307 (314)
12 KOG2802|consensus 99.7 7E-17 1.5E-21 153.5 12.9 189 5-198 205-406 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.3 1.1E-05 2.4E-10 78.0 12.8 89 9-104 123-211 (304)
14 TIGR01297 CDF cation diffusion 98.0 5.1E-05 1.1E-09 71.6 12.0 89 10-105 101-189 (268)
15 PRK09509 fieF ferrous iron eff 98.0 7.7E-05 1.7E-09 72.0 13.1 89 10-105 122-210 (299)
16 PRK03557 zinc transporter ZitB 97.2 0.0034 7.3E-08 61.0 11.6 71 30-106 148-218 (312)
17 KOG1485|consensus 95.1 0.076 1.7E-06 52.9 7.7 85 12-103 236-320 (412)
18 PF01545 Cation_efflux: Cation 91.8 0.14 3.1E-06 48.4 3.2 89 10-104 110-201 (284)
19 COG1230 CzcD Co/Zn/Cd efflux s 90.9 2 4.3E-05 41.4 9.9 70 32-107 152-221 (296)
20 PF14535 AMP-binding_C_2: AMP- 90.8 4.3 9.2E-05 32.1 10.3 57 269-327 16-78 (96)
21 COG4858 Uncharacterized membra 87.2 17 0.00036 32.8 12.1 23 179-201 189-211 (226)
22 TIGR02945 SUF_assoc FeS assemb 86.1 9 0.0002 30.3 9.4 48 284-331 34-83 (99)
23 PF01883 DUF59: Domain of unkn 81.1 6.9 0.00015 29.0 6.4 46 275-323 26-72 (72)
24 TIGR03406 FeS_long_SufT probab 80.3 15 0.00033 32.6 9.2 56 274-329 99-157 (174)
25 PF03780 Asp23: Asp23 family; 77.9 15 0.00032 29.3 7.8 49 277-326 49-105 (108)
26 KOG1483|consensus 76.6 21 0.00046 35.6 9.7 68 143-214 31-107 (404)
27 TIGR02159 PA_CoA_Oxy4 phenylac 73.9 14 0.00029 32.0 6.9 44 284-327 23-66 (146)
28 KOG1484|consensus 71.7 14 0.0003 36.2 7.0 63 39-107 211-273 (354)
29 TIGR00489 aEF-1_beta translati 69.4 40 0.00086 26.5 8.0 52 269-323 30-82 (88)
30 cd04870 ACT_PSP_1 CT domains f 64.7 37 0.00081 25.1 6.9 49 274-324 26-74 (75)
31 COG4956 Integral membrane prot 63.2 76 0.0016 30.9 10.0 40 173-216 104-143 (356)
32 PF06649 DUF1161: Protein of u 58.1 19 0.00041 25.4 3.7 40 303-342 2-42 (52)
33 PF07444 Ycf66_N: Ycf66 protei 57.1 92 0.002 24.3 9.1 46 152-204 33-82 (84)
34 PF09580 Spore_YhcN_YlaJ: Spor 55.1 85 0.0018 27.4 8.6 54 269-327 87-142 (177)
35 cd04869 ACT_GcvR_2 ACT domains 54.9 77 0.0017 23.4 7.2 50 274-324 26-80 (81)
36 COG0365 Acs Acyl-coenzyme A sy 52.7 17 0.00036 38.2 4.1 75 240-315 404-486 (528)
37 PRK00435 ef1B elongation facto 51.5 1.1E+02 0.0023 24.1 7.6 51 269-323 30-82 (88)
38 PF03927 NapD: NapD protein; 49.6 1.1E+02 0.0025 23.2 8.4 50 269-329 27-77 (79)
39 PRK11670 antiporter inner memb 46.7 1.1E+02 0.0025 30.3 8.8 44 284-327 45-89 (369)
40 PF13740 ACT_6: ACT domain; PD 46.6 1.1E+02 0.0025 22.6 6.9 43 274-318 29-71 (76)
41 PF09877 DUF2104: Predicted me 44.2 1.7E+02 0.0036 23.5 8.2 21 68-88 77-97 (99)
42 COG3696 Putative silver efflux 43.5 1.9E+02 0.0042 32.4 10.3 39 288-326 612-657 (1027)
43 KOG1175|consensus 43.1 23 0.00049 37.8 3.3 79 235-315 475-566 (626)
44 PF11403 Yeast_MT: Yeast metal 42.2 22 0.00047 22.7 1.9 23 336-358 2-26 (40)
45 PF11381 DUF3185: Protein of u 42.1 92 0.002 22.6 5.4 47 78-124 7-56 (59)
46 cd02413 40S_S3_KH K homology R 40.5 1.2E+02 0.0026 23.2 6.3 55 274-329 19-78 (81)
47 PF01390 SEA: SEA domain; Int 40.3 1.3E+02 0.0028 23.5 6.7 42 274-315 52-95 (107)
48 TIGR01129 secD protein-export 40.0 2.8E+02 0.0062 27.9 10.5 29 32-60 239-267 (397)
49 TIGR02865 spore_II_E stage II 38.6 3E+02 0.0065 30.3 11.2 42 21-62 97-138 (764)
50 PRK10334 mechanosensitive chan 38.6 2.4E+02 0.0053 27.0 9.4 53 277-329 222-281 (286)
51 PLN02601 beta-carotene hydroxy 35.3 4.1E+02 0.0089 25.5 11.8 77 51-133 79-157 (303)
52 COG2092 EFB1 Translation elong 34.8 2.3E+02 0.0049 22.3 7.1 47 274-323 35-82 (88)
53 COG0342 SecD Preprotein transl 34.7 5.2E+02 0.011 27.0 11.7 85 32-132 334-418 (506)
54 PRK10263 DNA translocase FtsK; 34.5 8.4E+02 0.018 28.8 16.9 18 34-51 69-86 (1355)
55 COG4858 Uncharacterized membra 33.7 3.7E+02 0.0079 24.4 13.2 79 46-133 135-215 (226)
56 PF11712 Vma12: Endoplasmic re 33.4 1.3E+02 0.0029 25.4 6.1 46 10-55 78-126 (142)
57 PF01037 AsnC_trans_reg: AsnC 32.9 1.8E+02 0.004 20.7 7.2 48 269-325 22-70 (74)
58 cd02412 30S_S3_KH K homology R 32.3 2.1E+02 0.0046 23.1 6.8 55 274-329 50-107 (109)
59 PRK05812 secD preprotein trans 32.0 3.3E+02 0.0071 28.4 9.7 30 32-61 324-353 (498)
60 COG1279 Lysine efflux permease 31.8 1.3E+02 0.0028 27.5 5.8 65 152-222 43-107 (202)
61 PF10002 DUF2243: Predicted me 31.8 3.4E+02 0.0073 23.4 9.9 57 33-98 43-100 (143)
62 PRK13024 bifunctional preprote 31.5 7.4E+02 0.016 27.3 13.5 30 32-61 257-286 (755)
63 PF15629 Perm-CXXC: Permuted s 31.5 24 0.00051 22.3 0.8 17 348-364 10-26 (32)
64 PRK11589 gcvR glycine cleavage 30.8 1.7E+02 0.0037 26.3 6.5 52 274-326 122-178 (190)
65 PF06570 DUF1129: Protein of u 30.5 4E+02 0.0087 23.9 13.0 14 18-31 92-105 (206)
66 PF04246 RseC_MucC: Positive r 28.9 3.4E+02 0.0073 22.5 8.2 44 19-62 77-120 (135)
67 PF02038 ATP1G1_PLM_MAT8: ATP1 28.7 1E+02 0.0022 21.6 3.6 30 63-93 4-33 (50)
68 PF06570 DUF1129: Protein of u 28.0 4.5E+02 0.0097 23.6 15.5 31 77-107 79-109 (206)
69 cd00292 EF1B Elongation factor 27.8 3E+02 0.0065 21.5 8.2 51 269-323 30-82 (88)
70 cd04893 ACT_GcvR_1 ACT domains 27.7 2.6E+02 0.0055 20.7 7.1 48 274-324 28-75 (77)
71 PRK13023 bifunctional preprote 27.5 6.9E+02 0.015 27.6 11.5 79 32-125 269-347 (758)
72 COG1302 Uncharacterized protei 27.2 2.3E+02 0.005 24.0 6.3 52 278-329 57-115 (131)
73 PRK12585 putative monovalent c 26.5 4.9E+02 0.011 23.6 9.9 19 152-170 40-58 (197)
74 COG3830 ACT domain-containing 26.4 1.1E+02 0.0025 24.1 4.0 41 285-326 40-81 (90)
75 TIGR01608 citD citrate lyase a 26.1 1.2E+02 0.0025 24.2 4.0 36 292-327 29-67 (92)
76 cd04872 ACT_1ZPV ACT domain pr 25.2 1.7E+02 0.0037 22.2 4.9 50 274-325 28-78 (88)
77 cd02411 archeal_30S_S3_KH K ho 25.0 2.5E+02 0.0054 21.5 5.8 54 274-328 27-83 (85)
78 cd04887 ACT_MalLac-Enz ACT_Mal 24.4 2.2E+02 0.0047 20.4 5.2 36 274-309 26-61 (74)
79 PF07136 DUF1385: Protein of u 24.1 6E+02 0.013 23.8 15.4 31 71-101 39-69 (236)
80 MTH00140 COX2 cytochrome c oxi 24.0 4E+02 0.0086 24.5 7.9 29 63-91 51-79 (228)
81 PF05915 DUF872: Eukaryotic pr 24.0 3.3E+02 0.0072 22.4 6.6 47 75-121 40-88 (115)
82 PF10934 DUF2634: Protein of u 23.9 3.6E+02 0.0079 21.9 6.8 28 269-297 81-108 (112)
83 KOG1482|consensus 23.8 5.3E+02 0.011 25.9 8.9 69 142-214 94-171 (379)
84 PRK00194 hypothetical protein; 23.8 2E+02 0.0044 21.8 5.1 51 274-326 30-81 (90)
85 PRK12933 secD preprotein trans 23.7 9.3E+02 0.02 25.8 13.5 29 32-60 431-459 (604)
86 PF07687 M20_dimer: Peptidase 23.0 1.8E+02 0.0038 22.6 4.8 33 284-316 75-107 (111)
87 KOG2877|consensus 22.7 8E+02 0.017 24.7 11.2 77 83-166 56-136 (389)
88 PF04455 Saccharop_dh_N: LOR/S 22.4 4.2E+02 0.0092 21.4 7.6 62 269-330 28-90 (103)
89 PRK11281 hypothetical protein; 21.1 1.3E+03 0.029 26.7 21.1 28 288-315 994-1021(1113)
90 COG4035 Predicted membrane pro 20.2 61 0.0013 25.7 1.4 21 68-88 84-104 (108)
91 PF11654 DUF2665: Protein of u 20.1 92 0.002 21.6 2.1 19 181-199 5-23 (47)
No 1
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=3.8e-50 Score=388.24 Aligned_cols=272 Identities=29% Similarity=0.494 Sum_probs=247.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHH
Q psy1590 4 TNKCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINT 82 (365)
Q Consensus 4 ~~~r~l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~ 82 (365)
+.+|++++++++|++++++|+++|+++||.||++||+||+.|++++++++++.++++|| |++|||||+|+|++++++++
T Consensus 16 ~~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~ 95 (312)
T PRK03557 16 NNARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNA 95 (312)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCcccccccccCccchhH---HhHHHHHH
Q psy1590 83 VFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNA---VSITDGLG 159 (365)
Q Consensus 83 i~ll~~~~~il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~~~~~~~~~~~~~~h~~~~k~~~s~~l~A---~~~~D~l~ 159 (365)
++|++++++++++|++++++|.+.. ..++++++++++++|.+.+++++ + . ++.+|.+++| |+++|+++
T Consensus 96 ~~l~~~~~~i~~eai~~l~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~-~-~------~~~~s~~l~a~~~h~~~D~l~ 166 (312)
T PRK03557 96 IALVVITILIVWEAIERFRTPRPVA-GGMMMAIAVAGLLANILSFWLLH-H-G------SEEKNLNVRAAALHVLGDLLG 166 (312)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHHHHHHHHHHHHh-c-c------cccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987765 45677788889999987544443 3 2 5566778886 99999999
Q ss_pred HHHHHHH-HHHHhhcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH-hccccccchh
Q psy1590 160 AIMLVLS-SICISHFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKL-LHKYKDDIIS 237 (365)
Q Consensus 160 si~vlia-~i~~~~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~~~~~~~i~~~i-~~~~~~~~~~ 237 (365)
|++++++ ++.. ++||+ |+||++++++++++++.+++++|+++.+|+|++|++++.+++++.+ ++
T Consensus 167 s~~vlv~~~~~~--~~g~~----~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~-------- 232 (312)
T PRK03557 167 SVGAIIAALIII--WTGWT----PADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCRE-------- 232 (312)
T ss_pred HHHHHHHHHHHH--HcCCc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhc--------
Confidence 9999999 4555 78988 8999999999999999999999999999999999988889998887 45
Q ss_pred hhhhhccccccccCCccccccccccccccccccceeeeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhh-c
Q psy1590 238 IHEFLAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHG-L 316 (365)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~-~ 316 (365)
.|||.++|++|+|+. |+++++++|++++++.+.+++++++++.+++ +
T Consensus 233 -------------------------------~~gV~~vh~l~~~~~-G~~~~v~~hv~v~~~~~~~~i~~~i~~~l~~~~ 280 (312)
T PRK03557 233 -------------------------------IPEVRNVHHVHVWMV-GEKPVMTLHVQVIPPHDHDALLDRIQDYLMHHY 280 (312)
T ss_pred -------------------------------CCCceeEEEEEEEEe-CCeEEEEEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 899999999999995 8999999999999888899999999999975 6
Q ss_pred CCceEEEeeeecCC
Q psy1590 317 GVHSVTIQPEFLDL 330 (365)
Q Consensus 317 ~v~~vtI~ve~~~~ 330 (365)
++.++|||+||.++
T Consensus 281 ~i~~vtIh~e~~~~ 294 (312)
T PRK03557 281 QIEHATIQMEYQPC 294 (312)
T ss_pred CCCEEEEEeccCcC
Confidence 99999999998753
No 2
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-50 Score=384.91 Aligned_cols=275 Identities=21% Similarity=0.334 Sum_probs=261.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHHH
Q psy1590 6 KCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINTVF 84 (365)
Q Consensus 6 ~r~l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~i~ 84 (365)
+|..+++++.|+++++.|+++|+++||.||+|||+||+.|++++++.++++++++|| |++|||||+|+|++++++.+++
T Consensus 12 ~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl~~~~~ 91 (304)
T COG0053 12 RRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLASLIVSIL 91 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCcccccccccCccchhH---HhHHHHHHHH
Q psy1590 85 LTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNA---VSITDGLGAI 161 (365)
Q Consensus 85 ll~~~~~il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~~~~~~~~~~~~~~h~~~~k~~~s~~l~A---~~~~D~l~si 161 (365)
++++|++++++++.++++|.+..++.+++.+++++++++.. ++++.++.+ |+.+|+.+.| |.++|.++|+
T Consensus 92 i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~-l~~~~~~~~------kk~~S~aL~Ada~h~~sD~~ts~ 164 (304)
T COG0053 92 IFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEA-LYRYLRRVG------KKTNSQALIADALHHRSDVLTSL 164 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHH------HHhCCHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999889999999999999996 777777777 9999999996 9999999999
Q ss_pred HHHHHHHHHhhcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccccccchhhhhh
Q psy1590 162 MLVLSSICISHFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDIISIHEF 241 (365)
Q Consensus 162 ~vlia~i~~~~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~~~~~~~i~~~i~~~~~~~~~~~~~~ 241 (365)
+++++++.. ++||+ |+||+++++|+++|++++++++|+++..|+|+.++++..+++++.+.+
T Consensus 165 ~~lvgl~~~--~~g~~----~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~------------ 226 (304)
T COG0053 165 AVLVGLLGS--LLGWP----WLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILS------------ 226 (304)
T ss_pred HHHHHHHHH--HhCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhc------------
Confidence 999996676 89998 999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCCccccccccccccccccccceeeeeEEEEEEeeCCEEEEEEEEEECCC---ccHHHHHHHHHHHHhh-cC
Q psy1590 242 LAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHIKFHDK---QKYIELHKKIQCFFHG-LG 317 (365)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~---~~~~~i~~~i~~~l~~-~~ 317 (365)
.|||.++|++++|+ .|+.+++++|++++++ .++|+|.+++++.+++ ++
T Consensus 227 ---------------------------~~~V~~v~~lr~R~-~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~ 278 (304)
T COG0053 227 ---------------------------VPGVKGVHDLRTRK-SGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFP 278 (304)
T ss_pred ---------------------------CCcceeeecceeee-eCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcC
Confidence 89999999999997 7999999999999999 8999999999999986 55
Q ss_pred -CceEEEeeeecCCCCC
Q psy1590 318 -VHSVTIQPEFLDLNSS 333 (365)
Q Consensus 318 -v~~vtI~ve~~~~~~~ 333 (365)
+.+++||+||.+....
T Consensus 279 ~~~~v~IhveP~~~~~~ 295 (304)
T COG0053 279 KVADVTIHVEPLGEKEE 295 (304)
T ss_pred CCceEEEEecCCccccc
Confidence 8999999999876644
No 3
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-49 Score=374.32 Aligned_cols=271 Identities=27% Similarity=0.521 Sum_probs=252.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHH
Q psy1590 4 TNKCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINT 82 (365)
Q Consensus 4 ~~~r~l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~ 82 (365)
..+|++++++.+|+.++++|++.|+++||+||+||++|++.|+++.++++++.++++|| +++|||||.|+|.+++++++
T Consensus 19 ~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~na 98 (296)
T COG1230 19 RNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNA 98 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCcccccccccCccchhH---HhHHHHHH
Q psy1590 83 VFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNA---VSITDGLG 159 (365)
Q Consensus 83 i~ll~~~~~il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~~~~~~~~~~~~~~h~~~~k~~~s~~l~A---~~~~D~l~ 159 (365)
++|+++++++++|+++|+++|++++. ..+++++++++++|+++++.+.+. . .++.++++ |.++|+++
T Consensus 99 v~Li~~s~~I~~EAi~R~~~P~~i~~-~~ml~va~~GL~vN~~~a~ll~~~-~--------~~~lN~r~a~LHvl~D~Lg 168 (296)
T COG1230 99 LLLIVVSLLILWEAIQRLLAPPPIHY-SGMLVVAIIGLVVNLVSALLLHKG-H--------EENLNMRGAYLHVLGDALG 168 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCc-cchHHHHHHHHHHHHHHHHHhhCC-C--------cccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999875 789999999999999988888653 1 13677775 99999999
Q ss_pred HHHHHHH-HHHHhhcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccccccchhh
Q psy1590 160 AIMLVLS-SICISHFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDIISI 238 (365)
Q Consensus 160 si~vlia-~i~~~~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~~~~~~~i~~~i~~~~~~~~~~~ 238 (365)
|++++++ +++. ++||+ |+||+++++++++++..+++++|++..+|++..|+..+.+++++.+.+
T Consensus 169 sv~vIia~i~i~--~~~w~----~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~--------- 233 (296)
T COG1230 169 SVGVIIAAIVIR--FTGWS----WLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLR--------- 233 (296)
T ss_pred HHHHHHHHHHHH--HhCCC----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhc---------
Confidence 9999999 6676 89999 999999999999999999999999999999999999999999999998
Q ss_pred hhhhccccccccCCccccccccccccccccccceeeeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHh-hcC
Q psy1590 239 HEFLAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFH-GLG 317 (365)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~-~~~ 317 (365)
.|||.++|++|+|+++++....++|+++++..+.+++.+++++.+. ++|
T Consensus 234 ------------------------------~~~v~~vhdlHvWsi~~~~~~~t~Hv~v~~~~~~~~~~~~~~~~l~~~~~ 283 (296)
T COG1230 234 ------------------------------IPGVASVHDLHVWSITGGEHALTLHVVVDEVADADAALDQIVRRLLEKYG 283 (296)
T ss_pred ------------------------------CCCccceeecccCCCCCCceeEEEEEEecCccchHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999966666668888888885 589
Q ss_pred CceEEEeeeecC
Q psy1590 318 VHSVTIQPEFLD 329 (365)
Q Consensus 318 v~~vtI~ve~~~ 329 (365)
+.++|||+|+..
T Consensus 284 I~hvTiQ~e~~~ 295 (296)
T COG1230 284 IEHVTIQLETEG 295 (296)
T ss_pred cceEEEEecCCC
Confidence 999999999864
No 4
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=8.2e-49 Score=377.10 Aligned_cols=271 Identities=16% Similarity=0.218 Sum_probs=251.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHHH
Q psy1590 6 KCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINTVF 84 (365)
Q Consensus 6 ~r~l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~i~ 84 (365)
+|..++++++|++++++|+++|+++||.||++||+||+.|+++.++++++.++++|| |++|||||+|+|++++++++++
T Consensus 10 ~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~ 89 (299)
T PRK09509 10 SRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSMF 89 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHHHH
Confidence 588899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCcccccccccCccchhH---HhHHHHHHHH
Q psy1590 85 LTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNA---VSITDGLGAI 161 (365)
Q Consensus 85 ll~~~~~il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~~~~~~~~~~~~~~h~~~~k~~~s~~l~A---~~~~D~l~si 161 (365)
++++++++++++++++++|++..++.++++++++++++|.+ ++++.++.. ++.+|++++| |+++|+++|+
T Consensus 90 l~~~~~~~~~esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~-~~~~~~~~~------~~~~s~~l~a~~~~~~~D~~~s~ 162 (299)
T PRK09509 90 ISGSALFLFLTGIQHLISPTPMNDPGVGIIVTLVALICTLI-LVTFQRWVV------RKTQSQAVRADMLHYQSDVMMNG 162 (299)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHH------HHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887777778889999999986 555655554 6778999986 9999999999
Q ss_pred HHHHHHHHHhhcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccccccchhhhhh
Q psy1590 162 MLVLSSICISHFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDIISIHEF 241 (365)
Q Consensus 162 ~vlia~i~~~~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~~~~~~~i~~~i~~~~~~~~~~~~~~ 241 (365)
++++++++. ++||+ |+||++++++++++++.+++++|++...|+|++|+++..++|++.+++
T Consensus 163 ~vl~~~~~~--~~g~~----~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~------------ 224 (299)
T PRK09509 163 AILLALGLS--WYGWH----RADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS------------ 224 (299)
T ss_pred HHHHHHHHH--HhChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh------------
Confidence 999996666 67887 999999999999999999999999999999999998899999999999
Q ss_pred hccccccccCCccccccccccccccccccceeeeeEEEEEEeeCCEEEEEEEEEECCC---ccHHHHHHHHHHHHhh-cC
Q psy1590 242 LAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHIKFHDK---QKYIELHKKIQCFFHG-LG 317 (365)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~---~~~~~i~~~i~~~l~~-~~ 317 (365)
.|||.++|++|+|+ .|+..++++|++++++ +++|++.+++|+.+++ ++
T Consensus 225 ---------------------------~~~v~~v~~l~~~~-~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~ 276 (299)
T PRK09509 225 ---------------------------WPGVSGAHDLRTRQ-SGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFP 276 (299)
T ss_pred ---------------------------CCCCcCceeeeeEe-eCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999 6999999999999988 6899999999999985 66
Q ss_pred CceEEEeeeecC
Q psy1590 318 VHSVTIQPEFLD 329 (365)
Q Consensus 318 v~~vtI~ve~~~ 329 (365)
..+++||+||.+
T Consensus 277 ~~~v~ihveP~~ 288 (299)
T PRK09509 277 GSDVIIHQDPCS 288 (299)
T ss_pred CCEEEEEeCCCC
Confidence 678999999965
No 5
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=1.2e-44 Score=342.32 Aligned_cols=257 Identities=27% Similarity=0.509 Sum_probs=233.8
Q ss_pred HHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1590 19 YFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGV 97 (365)
Q Consensus 19 l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~i~ll~~~~~il~~ai 97 (365)
++++|+++|+++||.+|++||+||+.|++++++++++.+.++|| |++|||||+|+|+++++++++++++++++++++++
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCcccccccccCccchhH---HhHHHHHHHHHHHHHHHHHhhcC
Q psy1590 98 KRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNA---VSITDGLGAIMLVLSSICISHFD 174 (365)
Q Consensus 98 ~~l~~~~~~~~~~~~l~i~~vslvv~~~~~~~~~~~~~~h~~~~k~~~s~~l~A---~~~~D~l~si~vlia~i~~~~~~ 174 (365)
+++++|++...+.+++.++.+++++|.+. +++.++.+ ++.+|++++| |+++|+++|+++++++.+. .+
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~------~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~--~~ 152 (268)
T TIGR01297 82 ERLINPEPEIDGGTMLIVAIVGLIVNLIL-ALYLHRVG------HRLGSLALRAAALHVLSDALSSVGVLIGALLI--YF 152 (268)
T ss_pred HHHhCCCCcccchhHHHHHHHHHHHHHHH-HHHHHHhC------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 99999886666777888999999999974 45544545 7888999996 9999999999999995555 33
Q ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccccccchhhhhhhccccccccCCcc
Q psy1590 175 DNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDIISIHEFLAEDKCFDFDSIN 254 (365)
Q Consensus 175 g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (365)
+++ |+||++++++++++++.+++++|++...|+|.+|+++..+++++.+++
T Consensus 153 ~~~----~~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~~------------------------- 203 (268)
T TIGR01297 153 GWH----WADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILS------------------------- 203 (268)
T ss_pred HHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhc-------------------------
Confidence 465 999999999999999999999999999999999998999999999998
Q ss_pred ccccccccccccccccceeeeeEEEEEEeeCC-EEEEEEEEEECCC---ccHHHHHHHHHHHHh-h-cCCceEEEeeeec
Q psy1590 255 TATHRCAGIEKETYKDDIISIHEFHVWQLESN-RIIATLHIKFHDK---QKYIELHKKIQCFFH-G-LGVHSVTIQPEFL 328 (365)
Q Consensus 255 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~-~~~v~i~i~v~~~---~~~~~i~~~i~~~l~-~-~~v~~vtI~ve~~ 328 (365)
.|||.++|++|+|+. |+ ++.+++|++++++ .++|++.+++|+.++ + .++.+|+||+||.
T Consensus 204 --------------~~~v~~v~~~~~~~~-G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 204 --------------IPGVKGVHDLHIWRI-GPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred --------------CCCcccceEeEEEEc-CCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999995 66 9999999999998 678999999999886 4 4899999999983
No 6
>KOG1483|consensus
Probab=100.00 E-value=3.1e-44 Score=342.68 Aligned_cols=284 Identities=40% Similarity=0.745 Sum_probs=260.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHH
Q psy1590 4 TNKCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINT 82 (365)
Q Consensus 4 ~~~r~l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~ 82 (365)
.++.+++..++++++++++|++.|+.+||+||++|++|++.|+++..+++++.|.+++. ++++||||.|.|.+++++++
T Consensus 6 gk~~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ 85 (404)
T KOG1483|consen 6 GKSLRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNA 85 (404)
T ss_pred ccccceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHH
Confidence 46778888999999999999999999999999999999999999999999999999995 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCccc-----c------------------
Q psy1590 83 VFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKHC-----D------------------ 139 (365)
Q Consensus 83 i~ll~~~~~il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~~~~~~~~~~~~~~h~-----~------------------ 139 (365)
+|+....+.++.|+++|+++|.....|..++.+++++++.|.++++.+..++..|+ +
T Consensus 86 ifl~alc~~I~~EA~~R~I~p~~i~~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~~ 165 (404)
T KOG1483|consen 86 IFLTALCVSILIEAIERIIEPHHIENPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLHS 165 (404)
T ss_pred HHHHHHHHHHHHHHHHhhcCCccccCceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCCch
Confidence 99999999999999999999999999999999999999999999999887743331 1
Q ss_pred --------------------------------------------cc----------cccCccchhH---HhHHHHHHHHH
Q psy1590 140 --------------------------------------------CF----------TSRLSVLVNA---VSITDGLGAIM 162 (365)
Q Consensus 140 --------------------------------------------~~----------k~~~s~~l~A---~~~~D~l~si~ 162 (365)
.. ++.++-++++ |.+.|++.++.
T Consensus 166 ~~~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I~ 245 (404)
T KOG1483|consen 166 HAIGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSII 245 (404)
T ss_pred hccCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccceE
Confidence 00 0001222232 89999999999
Q ss_pred HHHH-HHHHhhcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccccccchhhhhh
Q psy1590 163 LVLS-SICISHFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDIISIHEF 241 (365)
Q Consensus 163 vlia-~i~~~~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~~~~~~~i~~~i~~~~~~~~~~~~~~ 241 (365)
|+++ +++| +++|. |.+|+||+.+++++++|++++||++|+|..+|+|.+|...+.+++++.+..
T Consensus 246 Vi~~A~~v~--~t~~~-~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~------------ 310 (404)
T KOG1483|consen 246 VIVSALFVY--KTEYS-WAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLT------------ 310 (404)
T ss_pred EEEEEEEEE--eccee-hhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhc------------
Confidence 9999 7777 78886 999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCCccccccccccccccccccceeeeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhcCCceE
Q psy1590 242 LAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGLGVHSV 321 (365)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~~v~~v 321 (365)
+|||++|||+|+|+++|+++++++||+++...+.-+++++|++.|+++||..+
T Consensus 311 ---------------------------~~gv~~vh~lhvWqL~~~r~IAt~Hi~~~~p~~~~~~a~~ir~~fh~~GIhs~ 363 (404)
T KOG1483|consen 311 ---------------------------VPGVISVHDLHVWQLAGSRIIATIHIQIQNPKEYMKIAEKIRSYFHDQGIHST 363 (404)
T ss_pred ---------------------------CcceeeeeeeeeeeeccceEEEEEEEEecCcHHHHHHHHHHHHHHHhcCCcce
Confidence 99999999999999999999999999999888888999999999999999999
Q ss_pred EEeeeecC
Q psy1590 322 TIQPEFLD 329 (365)
Q Consensus 322 tI~ve~~~ 329 (365)
|||||+.+
T Consensus 364 TiqPeF~~ 371 (404)
T KOG1483|consen 364 TIQPEFAP 371 (404)
T ss_pred eeccchhh
Confidence 99999987
No 7
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=5.9e-44 Score=339.99 Aligned_cols=271 Identities=22% Similarity=0.440 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHHHHHH
Q psy1590 9 LLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINTVFLTG 87 (365)
Q Consensus 9 l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~i~ll~ 87 (365)
++++++++++++++|+++|+++||.++++||+|++.|+++.++++++.+.++|| |++|||||+|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 578999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCcccccccccC--ccchhH---HhHHHHHHHHH
Q psy1590 88 LCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRL--SVLVNA---VSITDGLGAIM 162 (365)
Q Consensus 88 ~~~~il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~~~~~~~~~~~~~~h~~~~k~~~--s~~l~A---~~~~D~l~si~ 162 (365)
++++++++++++++++++...+.+++.++++++++|++.++.+++.. |+.+ |+++++ +++.|.+.|++
T Consensus 81 ~~~~~~~~si~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~l~~~~~~~~~d~~~s~~ 153 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEPSPPGIVLIVALVSIIVNLLLAWYLRRVG-------KRLQRRSPALRADALHSLIDVLSSLA 153 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSSSTTTS-THHHHHHHHHHHHHHHHHHHHH-------HHS---SHHHHHHHHHHHHHTS-SST
T ss_pred hHHHHHHHHhhcccccccchhhhhhhhhhhhhhhHHHHHHHHHhhcc-------cccccccccchhhhhhcccchhHHHH
Confidence 99999999999999998877777776679999999998666666532 3333 888885 99999999999
Q ss_pred HHHHHHHHhhcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccccccchhhhhhh
Q psy1590 163 LVLSSICISHFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDIISIHEFL 242 (365)
Q Consensus 163 vlia~i~~~~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~~~~~~~i~~~i~~~~~~~~~~~~~~~ 242 (365)
++++.++.. +.++. | |+||++++++++++++.+++++|++...|+|++|+++..+++++.+++
T Consensus 154 v~i~~~~~~-~~~~~-~--~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~------------- 216 (284)
T PF01545_consen 154 VLISLLLAY-LGPWF-W--YADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIES------------- 216 (284)
T ss_dssp S-SSSTSSS-TT-ST-S---SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHH-HHhcc-c--ccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhcc-------------
Confidence 999944331 55565 1 599999999999999999999999999999999988888999999999
Q ss_pred ccccccccCCccccccccccccccccccceeeeeEEEEEEeeCC-EEEEEEEEEECCC---ccHHHHHHHHHHHHhh-c-
Q psy1590 243 AEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESN-RIIATLHIKFHDK---QKYIELHKKIQCFFHG-L- 316 (365)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~-~~~v~i~i~v~~~---~~~~~i~~~i~~~l~~-~- 316 (365)
.||+.+++++|+|+. |+ ++.+++|++++++ ++++++++++++.+++ +
T Consensus 217 --------------------------~~~v~~v~~~~~~~~-g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~ 269 (284)
T PF01545_consen 217 --------------------------VPGVIEVHDLRVWQV-GRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFP 269 (284)
T ss_dssp --------------------------TSS-SEEEEEEEEEE-TT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHST
T ss_pred --------------------------CCceEeccceEEEEe-cCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 899999999999996 55 9999999999998 6899999999999986 5
Q ss_pred CCceEEEeeeecCC
Q psy1590 317 GVHSVTIQPEFLDL 330 (365)
Q Consensus 317 ~v~~vtI~ve~~~~ 330 (365)
++.++|||+||.++
T Consensus 270 ~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 270 GIYDVTIHIEPDEE 283 (284)
T ss_dssp TCEEEEEEEEECGG
T ss_pred CcEEEEEEEEecCC
Confidence 99999999999865
No 8
>KOG1482|consensus
Probab=100.00 E-value=2.9e-39 Score=307.57 Aligned_cols=283 Identities=22% Similarity=0.408 Sum_probs=256.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHHH
Q psy1590 6 KCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINTVF 84 (365)
Q Consensus 6 ~r~l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~i~ 84 (365)
+|+++++.++.+.+++.|.+.|+.+||+|+++||.|.+.|..+..+++++++.++|| ++|..|||.|+|.+++++....
T Consensus 72 ~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~ 151 (379)
T KOG1482|consen 72 ERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLL 151 (379)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCcccccc--ccc--------CccchhH---
Q psy1590 85 LTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKHCDCF--TSR--------LSVLVNA--- 151 (365)
Q Consensus 85 ll~~~~~il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~~~~~~~~~~~~~~h~~~~--k~~--------~s~~l~A--- 151 (365)
++++...+++++++|+++++...+...|++.+.+++++|.++.+++....++|.|.. .+. .+.+++|
T Consensus 152 IW~~tgvLV~~Ai~Rl~s~~~ev~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~n~nvraAyi 231 (379)
T KOG1482|consen 152 IWVVTGVLVYEAIQRLLSGDYEVNGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEELNLNVRAAFV 231 (379)
T ss_pred HHHhhhhhHHHHHhhhhcCceeecceEEEEEeehhhhhhhhhhhhhcccCCCCCCCCCCCcCcccccccccchHHHHHHH
Confidence 999999999999999999996666778899999999999987777765433222211 111 1256665
Q ss_pred HhHHHHHHHHHHHHH-HHHHhhcC-CCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhc
Q psy1590 152 VSITDGLGAIMLVLS-SICISHFD-DNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLH 229 (365)
Q Consensus 152 ~~~~D~l~si~vlia-~i~~~~~~-g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~~~~~~~i~~~i~~ 229 (365)
|.++|.+.|+||+++ .+++ |. +|. ++||+.+++.++..+.+..+++|+.+..||+.+|.+.+...+++.+.+
T Consensus 232 HVlGDliQSvGV~iaa~Ii~--f~P~~~----i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l~~ 305 (379)
T KOG1482|consen 232 HVLGDLIQSVGVLIAALIIY--FKPEYK----IADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGLLS 305 (379)
T ss_pred HHHHHHHHHHHHHhhheeEE--ecccce----ecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHhh
Confidence 999999999999999 6666 54 444 899999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhhhccccccccCCccccccccccccccccccceeeeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHH
Q psy1590 230 KYKDDIISIHEFLAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKI 309 (365)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i 309 (365)
++||.++||+|+|.++-++....+|+.++++++.+++.+++
T Consensus 306 ---------------------------------------iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~ad~~~vL~~~ 346 (379)
T KOG1482|consen 306 ---------------------------------------IEGVKAVHDLHIWSITVGKVALSVHLAIDSEADAEEVLDEA 346 (379)
T ss_pred ---------------------------------------hcceeEEEEEEEEEEecCceEEEEEEeecCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred HHHHhh-cCCceEEEeeeecCCCCC
Q psy1590 310 QCFFHG-LGVHSVTIQPEFLDLNSS 333 (365)
Q Consensus 310 ~~~l~~-~~v~~vtI~ve~~~~~~~ 333 (365)
.+.+++ +++.++|||+||.+++.+
T Consensus 347 ~~~i~~~~~~~~vTiQie~~~~~~~ 371 (379)
T KOG1482|consen 347 RSLIKRRYGISHVTIQIEPYTEEMD 371 (379)
T ss_pred HHHHHhhcceEEEEEEecCCccchh
Confidence 999985 799999999999988755
No 9
>KOG1484|consensus
Probab=100.00 E-value=2.6e-38 Score=297.04 Aligned_cols=282 Identities=25% Similarity=0.490 Sum_probs=248.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHH
Q psy1590 4 TNKCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINT 82 (365)
Q Consensus 4 ~~~r~l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~ 82 (365)
.++|+.+..+.+|+.++.++++.|..+||+.|++|++|+++|+.+.++.+++..++++| +..|||||.|+|.+++|.++
T Consensus 32 ~~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~ 111 (354)
T KOG1484|consen 32 KDSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNG 111 (354)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhc-cCcccc----------------------
Q psy1590 83 VFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDS-TTKHCD---------------------- 139 (365)
Q Consensus 83 i~ll~~~~~il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~~~~~~~~~~~-~~~h~~---------------------- 139 (365)
+++.+.+++++.|+++|+++|+++. .+..++++..++++|+++++.+... .+.||.
T Consensus 112 vflvl~a~fi~~Es~eRl~~ppei~-t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~~~~ 190 (354)
T KOG1484|consen 112 VFLVLIAFFIFSESVERLFDPPEIH-TNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLGVWD 190 (354)
T ss_pred HHHHHHHHHHhHHHHHHhcCchhcC-CceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhccccccccccc
Confidence 9999999999999999999997775 4556888999999999998888763 111221
Q ss_pred -------cccccCccchhH---HhHHHHHHHHHHHHH-HHHHhhcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1590 140 -------CFTSRLSVLVNA---VSITDGLGAIMLVLS-SICISHFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSAL 208 (365)
Q Consensus 140 -------~~k~~~s~~l~A---~~~~D~l~si~vlia-~i~~~~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~ 208 (365)
+.....+..+.+ |.++|.+.|++++++ +++. ++||. ++||+.+++|+++++.+.+|++|++..
T Consensus 191 ~~~~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~--~~gw~----~aDpicsllIailIf~sv~PL~k~s~~ 264 (354)
T KOG1484|consen 191 LHHHAHGHIHGHSHENMPGIFLHVLADTLGSVGVIISTLLIK--LFGWM----IADPICSLLIAILIFLSVLPLLKYSGK 264 (354)
T ss_pred cccccccccCCcccccccchhHHHHHHHhcchHHHHHHHHHH--hcCcc----chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112333433 999999999999999 6665 89999 999999999999999999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHhccccccchhhhhhhccccccccCCccccccccccccccccccceeeeeEEEEEEeeCCEE
Q psy1590 209 ILIQSTPQHIDVPELKRKLLHKYKDDIISIHEFLAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRI 288 (365)
Q Consensus 209 ~Ll~~~p~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~~~ 288 (365)
.|||++||+. .+++++.+++. +..+||.++.+-|+|+++.+.+
T Consensus 265 iLLq~tPp~~-~~~l~~cl~~I------------------------------------s~~~gV~~v~~~hFWt~~~g~~ 307 (354)
T KOG1484|consen 265 ILLQRTPPHL-ENSLKQCLRQI------------------------------------STLDGVTSVQNPHFWTLESGSV 307 (354)
T ss_pred HHHhcCChhh-hhHHHHHHHHh------------------------------------hccccceeeccCceeeccCCce
Confidence 9999999865 46777766661 2289999999999999999999
Q ss_pred EEEEEEEECCCccHHHHHHHHHHHHhhcCCceEEEeeeecC
Q psy1590 289 IATLHIKFHDKQKYIELHKKIQCFFHGLGVHSVTIQPEFLD 329 (365)
Q Consensus 289 ~v~i~i~v~~~~~~~~i~~~i~~~l~~~~v~~vtI~ve~~~ 329 (365)
++++|+++..+.|.+.+..++.++++..||.+.|||+|..+
T Consensus 308 vGtlhl~V~~dade~~vl~~V~~~~~~~gV~~ltvQv~~~~ 348 (354)
T KOG1484|consen 308 VGTLHLQVSSDADEQSVLAHVTRKLEDAGVKDLTVQVEKEN 348 (354)
T ss_pred EEEEEEEEecCcchhHHHHHHHHHHHhcceeEEEEEEeccc
Confidence 99999999999999999999999999999999999988654
No 10
>KOG1485|consensus
Probab=100.00 E-value=3.5e-34 Score=277.41 Aligned_cols=273 Identities=16% Similarity=0.201 Sum_probs=225.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHH
Q psy1590 5 NKCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINTV 83 (365)
Q Consensus 5 ~~r~l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~i 83 (365)
+++..++++++|+.+++.|.++|+++||.|++||++|++.|+++.++.|+.++.++|| +.+||||++|+|+++.+..+.
T Consensus 113 ~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~ 192 (412)
T KOG1485|consen 113 ERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSV 192 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHHH
Confidence 4677899999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC----CCCch-------HHHHHHHHHHHHHHHHHHHHHhccCcccccccccCccchhH-
Q psy1590 84 FLTGLCFLMVIHGVKRILEPSP----VKEPK-------TILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNA- 151 (365)
Q Consensus 84 ~ll~~~~~il~~ai~~l~~~~~----~~~~~-------~~l~i~~vslvv~~~~~~~~~~~~~~h~~~~k~~~s~~l~A- 151 (365)
+|..+++.++++++.++..|.. ..++. |.+.+++....+++. ++++.+ ++.+|..+.|
T Consensus 193 iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~-l~~~c~---------~~~ns~iv~a~ 262 (412)
T KOG1485|consen 193 IMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLR-LTLYCA---------IKTNSNIVRAN 262 (412)
T ss_pred HHHHHHHHHHHHhHHhhhcccccccccCchhhcccchhhhheehhhHHHHHHH-HHHHHH---------HhcCcHHHHHH
Confidence 9999999999999999887321 11111 333333333333332 223322 4455666764
Q ss_pred --HhHHHHHHHHHHHHHHHHHhhcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhc
Q psy1590 152 --VSITDGLGAIMLVLSSICISHFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLH 229 (365)
Q Consensus 152 --~~~~D~l~si~vlia~i~~~~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~~~~~~~i~~~i~~ 229 (365)
|+++|++++...++++.+. +..|+ |+||+++++++++++++|.+-..+++.+|+|++.+++..+++.....+
T Consensus 263 A~dHr~D~lTn~vaLva~~la--~~~~~----~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~ 336 (412)
T KOG1485|consen 263 AWDHRNDVLTNSVALVAASLA--YYYNY----WLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQ 336 (412)
T ss_pred HHHHHhHHHHHHHHHHHHHHH--Hhhhh----cccchhhhhhheehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 9999999999999995544 34445 999999999999999999999999999999996555555555555444
Q ss_pred cccccchhhhhhhccccccccCCccccccccccccccccccceeeeeEEEEEEeeCCEEEEEEEEEECCC---ccHHHHH
Q psy1590 230 KYKDDIISIHEFLAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHIKFHDK---QKYIELH 306 (365)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~---~~~~~i~ 306 (365)
. .+.+..++.++.+. .|..+.+++|++++++ ..+|++.
T Consensus 337 ~--------------------------------------~~~i~~idtv~~y~-~g~~~~Vev~ivl~~~~~l~~ah~i~ 377 (412)
T KOG1485|consen 337 H--------------------------------------GKLIKHIDTVRAYT-FGSHYFVEVHIVLDEDLSLSVAHDIG 377 (412)
T ss_pred h--------------------------------------cCccccceeeeeec-ccceEEEEEeeecCCCCccHHHHHHH
Confidence 2 56788999999999 6999999999999999 7899999
Q ss_pred HHHHHHHhhc-CCceEEEeeeecCCCC
Q psy1590 307 KKIQCFFHGL-GVHSVTIQPEFLDLNS 332 (365)
Q Consensus 307 ~~i~~~l~~~-~v~~vtI~ve~~~~~~ 332 (365)
+-+++.++.+ .+.++.+|.+....+.
T Consensus 378 E~lq~~ie~l~ever~fvh~d~e~~hr 404 (412)
T KOG1485|consen 378 ETLQKKIELLPEVERAFVHIDYEFLHR 404 (412)
T ss_pred HHHHHHHhhcchheeeeeecCccccCC
Confidence 9999999987 8999999999766543
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4e-28 Score=220.40 Aligned_cols=277 Identities=15% Similarity=0.172 Sum_probs=228.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHh-cC-CCCCCCchhHHHHHHHHHH
Q psy1590 4 TNKCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSK-KK-SIRNTYGWARVEILGVLIN 81 (365)
Q Consensus 4 ~~~r~l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~-r~-~~~~pyG~~r~E~l~~li~ 81 (365)
++++-+.++++..++++...+++|+++||.+++.||++|+.|+....+++...++.. +| |.|||||++.+|++.-.++
T Consensus 17 ~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~in 96 (314)
T COG3965 17 NEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAIN 96 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhhc
Confidence 456778899999999999999999999999999999999999999999999998877 77 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCcccccccccCccchhH---HhHHHHH
Q psy1590 82 TVFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNA---VSITDGL 158 (365)
Q Consensus 82 ~i~ll~~~~~il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~~~~~~~~~~~~~~h~~~~k~~~s~~l~A---~~~~D~l 158 (365)
+.++++.+.|.++.++..++++.+...+.+++.+.+++..++.. ++++.++.+ |+.+|+.+.+ +|+.|++
T Consensus 97 g~ll~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~-~~~~~~r~n------rr~~s~lIald~kqW~Mst~ 169 (314)
T COG3965 97 GTLLALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAA-IAWKLRRLN------RRLKSPLIALDTKQWLMSTC 169 (314)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHH-HHHHHHhhh------ccCCCchhhhHHHHHHHHHH
Confidence 99999999999999999999999888899999999999999996 555555555 7777887775 9999999
Q ss_pred HHHHHHHH-HHHHh-hcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccccccch
Q psy1590 159 GAIMLVLS-SICIS-HFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDII 236 (365)
Q Consensus 159 ~si~vlia-~i~~~-~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~~~~~~~i~~~i~~~~~~~~~ 236 (365)
.|.+++++ .+.+. ..+.|.++.+|+||..-.+.+++++..+.+.+|.+.++.+..+|+ +..++++....+.
T Consensus 170 lS~al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~-el~q~ies~~~~~------ 242 (314)
T COG3965 170 LSAALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMTPN-ELQQSIESHAHEI------ 242 (314)
T ss_pred HHHHHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHH------
Confidence 99999999 44441 036666677999999999999999999999999999999999998 4445555544431
Q ss_pred hhhhhhccccccccCCccccccccccccccccccceeeeeEEEEEEeeCCEEEEEEEEEECCC------ccHHHHHHHHH
Q psy1590 237 SIHEFLAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHIKFHDK------QKYIELHKKIQ 310 (365)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~------~~~~~i~~~i~ 310 (365)
.++ -+..+ ++.++-+ .|...++|+|..+|++ ++.++|++++.
T Consensus 243 --------------------------v~k----~~f~~-~~~yvAr-VGr~l~IEi~fiip~~~~ar~Ved~d~Irdei~ 290 (314)
T COG3965 243 --------------------------VEK----YGFPS-YHVYVAR-VGRGLFIEIHFIIPRESDARNVEDWDDIRDEIG 290 (314)
T ss_pred --------------------------HHH----hcCch-HHHHHHH-hccceEEEEEEEeCCccCCccchhHHHHHHHHH
Confidence 011 11111 1223445 5999999999999877 67889999999
Q ss_pred HHHhhcCC-ceEEEeee
Q psy1590 311 CFFHGLGV-HSVTIQPE 326 (365)
Q Consensus 311 ~~l~~~~v-~~vtI~ve 326 (365)
+.+...|- ..+||-+-
T Consensus 291 ~slg~~g~~rwltvsfT 307 (314)
T COG3965 291 QSLGSLGYERWLTVSFT 307 (314)
T ss_pred HHhhcCCcCceEEEEEe
Confidence 99987643 34555543
No 12
>KOG2802|consensus
Probab=99.71 E-value=7e-17 Score=153.54 Aligned_cols=189 Identities=14% Similarity=0.123 Sum_probs=143.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHH
Q psy1590 5 NKCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINTV 83 (365)
Q Consensus 5 ~~r~l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~i 83 (365)
..|++.+++++|+.-+.+|+.+++++||.+|+|+++||++|..+.++..+++..+.|. |..|||||.+.-++.+|+.++
T Consensus 205 s~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgv 284 (503)
T KOG2802|consen 205 SGRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGV 284 (503)
T ss_pred CCceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhcc
Confidence 3577889999999999999999999999999999999999999999999999999998 999999999999999999998
Q ss_pred HHHHHHHH-HHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcc---Cc-ccccc----cccCccchhHHhH
Q psy1590 84 FLTGLCFL-MVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDST---TK-HCDCF----TSRLSVLVNAVSI 154 (365)
Q Consensus 84 ~ll~~~~~-il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~~~~~~~~~~~~---~~-h~~~~----k~~~s~~l~A~~~ 154 (365)
-|+.+|.. .++.+++.+++|+|+++..|+..+..-+++.....+....+.. .+ .+-.+ .+.+++..++...
T Consensus 285 GIfc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~DPs~nvVl~ 364 (503)
T KOG2802|consen 285 GIFCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRDPSTNVVLL 364 (503)
T ss_pred ceeeecccchhhhccccccCCCCCcchHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHcCCCHHHHHhhcCCCcceEEEe
Confidence 88666554 7899999999999998877877776666666554433322211 10 00000 0111222223556
Q ss_pred HHHHHHHHHHHH---HHHHhhcCCCccccccchhhHHHHHHHHHHHH
Q psy1590 155 TDGLGAIMLVLS---SICISHFDDNQFVQLYIDPLACIILSILTLYI 198 (365)
Q Consensus 155 ~D~l~si~vlia---~i~~~~~~g~~~~~~~iDpv~siiIa~~ii~~ 198 (365)
.|..+-.||+++ +.+.. ++|.| +.|++++++|+.++-..
T Consensus 365 EDtAAVtGv~IAaa~m~lss-~tgnP----IyD~~GSivvGaLLGmV 406 (503)
T KOG2802|consen 365 EDTAAVTGVIIAAACMGLSS-ITGNP----IYDSLGSIVVGALLGMV 406 (503)
T ss_pred cchHHHHHHHHHHHHHHHHH-hcCCC----CccccchHHHHHHHHHH
Confidence 676666666666 33334 78988 99999999998765443
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.27 E-value=1.1e-05 Score=77.98 Aligned_cols=89 Identities=21% Similarity=0.321 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHH
Q psy1590 9 LLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGL 88 (365)
Q Consensus 9 l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~~~~~pyG~~r~E~l~~li~~i~ll~~ 88 (365)
.+++++.+..+..++.-.|-.+||.+|.||+.|+..|+++++.+++++- +.. +||..++++++++++++++..
T Consensus 123 ~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~-~~~------~g~~~lD~i~a~~I~~~Il~~ 195 (304)
T COG0053 123 ALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLL-GSL------LGWPWLDPLAALLISLYILKT 195 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHH-HHH------hCcHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999999999998 443 899999999999999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q psy1590 89 CFLMVIHGVKRILEPS 104 (365)
Q Consensus 89 ~~~il~~ai~~l~~~~ 104 (365)
++.++++++..+++..
T Consensus 196 ~~~~~~~s~~~L~d~~ 211 (304)
T COG0053 196 GFRLFKESVNELMDAA 211 (304)
T ss_pred HHHHHHHHHHHHhCcC
Confidence 9999999999999844
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=98.05 E-value=5.1e-05 Score=71.63 Aligned_cols=89 Identities=15% Similarity=0.328 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q psy1590 10 LFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGLC 89 (365)
Q Consensus 10 ~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~~~~~pyG~~r~E~l~~li~~i~ll~~~ 89 (365)
.+++++|+++...+.-.|...+|.++.+|+.|++.|+++++..+++...+. ||+.++|++++++.+++++..+
T Consensus 101 ~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~-------~~~~~~D~l~~i~i~~~i~~~~ 173 (268)
T TIGR01297 101 IVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY-------FGWHWADPIAALLISLLILYTA 173 (268)
T ss_pred HHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHH
Confidence 456677888888888778889999999999999999999999999998886 7789999999999999999999
Q ss_pred HHHHHHHHHHhhCCCC
Q psy1590 90 FLMVIHGVKRILEPSP 105 (365)
Q Consensus 90 ~~il~~ai~~l~~~~~ 105 (365)
+.++++++..+++..+
T Consensus 174 ~~l~~~~~~~Ll~~~~ 189 (268)
T TIGR01297 174 FRLLKESINVLLDAAP 189 (268)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999998765
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=98.03 E-value=7.7e-05 Score=71.96 Aligned_cols=89 Identities=22% Similarity=0.225 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q psy1590 10 LFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGLC 89 (365)
Q Consensus 10 ~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~~~~~pyG~~r~E~l~~li~~i~ll~~~ 89 (365)
.++++.|.++...+...+..++|.++.+|+.|+..|+++++..++++..+. +|+..++++++++.+++++..+
T Consensus 122 ~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~-------~g~~~~D~i~aiii~~~il~~~ 194 (299)
T PRK09509 122 LVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW-------YGWHRADALFALGIGIYILYSA 194 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hChHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777889999999999999999999999999988875 6889999999999999999999
Q ss_pred HHHHHHHHHHhhCCCC
Q psy1590 90 FLMVIHGVKRILEPSP 105 (365)
Q Consensus 90 ~~il~~ai~~l~~~~~ 105 (365)
+.++++++..+++..+
T Consensus 195 ~~i~~~~~~~Ll~~~~ 210 (299)
T PRK09509 195 LRMGYEAVQSLLDRAL 210 (299)
T ss_pred HHHHHHHHHHHhccCC
Confidence 9999999999998644
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.23 E-value=0.0034 Score=61.02 Aligned_cols=71 Identities=14% Similarity=0.302 Sum_probs=62.6
Q ss_pred hchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q psy1590 30 LNSVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSPV 106 (365)
Q Consensus 30 s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~~~~~pyG~~r~E~l~~li~~i~ll~~~~~il~~ai~~l~~~~~~ 106 (365)
.+|.++.+|+.|...|+++++.++++...... +|+..++++++++.+++++..++.++++++..+++..+.
T Consensus 148 ~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~------~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~ 218 (312)
T PRK03557 148 EKNLNVRAAALHVLGDLLGSVGAIIAALIIIW------TGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPV 218 (312)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 57899999999999999999999888876652 456669999999999999999999999999999986554
No 17
>KOG1485|consensus
Probab=95.08 E-value=0.076 Score=52.89 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy1590 12 MFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGLCFL 91 (365)
Q Consensus 12 ~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~~~~~pyG~~r~E~l~~li~~i~ll~~~~~ 91 (365)
++......+..-...+..+||-.++|-|.|-..|+++..++|++...+. |.+.-++|+++++++++++..++.
T Consensus 236 ~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~-------~~~~~lDP~gailVS~~ii~t~~~ 308 (412)
T KOG1485|consen 236 MISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAY-------YYNYWLDPIGAILVSTYIIYTGGR 308 (412)
T ss_pred hhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------hhhhcccchhhhhhheehhhhhhH
Confidence 4444455555566677889999999999999999999999999999998 777899999999999999999999
Q ss_pred HHHHHHHHhhCC
Q psy1590 92 MVIHGVKRILEP 103 (365)
Q Consensus 92 il~~ai~~l~~~ 103 (365)
-..+++..|++.
T Consensus 309 t~~~~i~~Lvg~ 320 (412)
T KOG1485|consen 309 TGLENIKELVGR 320 (412)
T ss_pred HHHHHHHHHhCC
Confidence 999999999965
No 18
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=91.78 E-value=0.14 Score=48.42 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--hHHHHHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCchh-HHHHHHHHHHHHHHH
Q psy1590 10 LFMFVGTFSYFIIEITYGYKLN--SVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNTYGWA-RVEILGVLINTVFLT 86 (365)
Q Consensus 10 ~i~l~~nl~l~v~kl~~g~~s~--S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~~~~~pyG~~-r~E~l~~li~~i~ll 86 (365)
.+++++|.++.....-.+--.+ |.++.+++.|...|.+.++..+++.....- .++. -++++++++.+++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~------~~~~~~~D~v~~l~i~~~i~ 183 (284)
T PF01545_consen 110 LVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYL------GPWFWYADPVASLLIALFIL 183 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSST------T-STS-SSHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHH------HhcccccchhhhhHHHHHHh
Confidence 3455555555555554444456 999999999999999999888888766652 2233 499999999999999
Q ss_pred HHHHHHHHHHHHHhhCCC
Q psy1590 87 GLCFLMVIHGVKRILEPS 104 (365)
Q Consensus 87 ~~~~~il~~ai~~l~~~~ 104 (365)
..++-++++++..+++..
T Consensus 184 ~~~~~~~~~~~~~Ll~~~ 201 (284)
T PF01545_consen 184 YSGYPLIKESIRILLDAS 201 (284)
T ss_dssp HHHHHHHHHHHHHHTT-S
T ss_pred hhhhhchhhhhccccccc
Confidence 999999999999999775
No 19
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=90.86 E-value=2 Score=41.44 Aligned_cols=70 Identities=9% Similarity=0.246 Sum_probs=61.6
Q ss_pred hHHHHHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy1590 32 SVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSPVK 107 (365)
Q Consensus 32 S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~~~~~pyG~~r~E~l~~li~~i~ll~~~~~il~~ai~~l~~~~~~~ 107 (365)
+.-+=+--+|.+.|++.+.....+.-.... +||...+|+.+++.+++++..+..++.++.+-+++..|..
T Consensus 152 ~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~------~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~ 221 (296)
T COG1230 152 NLNMRGAYLHVLGDALGSVGVIIAAIVIRF------TGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEG 221 (296)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 577777789999999999999888777765 7888899999999999999999999999999999877744
No 20
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=90.77 E-value=4.3 Score=32.12 Aligned_cols=57 Identities=14% Similarity=0.080 Sum_probs=44.9
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEECCCc-----cHHHHHHHHHHHHhh-cCCceEEEeeee
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDKQ-----KYIELHKKIQCFFHG-LGVHSVTIQPEF 327 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~~-----~~~~i~~~i~~~l~~-~~v~~vtI~ve~ 327 (365)
+|++..-..+.+.+ .++.=.+.+.|+..++. +..++.+++++.|++ +|+. +.|++-|
T Consensus 16 ~~~~~~~y~i~v~~-~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~-~~V~lv~ 78 (96)
T PF14535_consen 16 FPEVSPEYQIVVTR-EGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR-PEVELVP 78 (96)
T ss_dssp STTEEEEEEEEEEE-ETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-
T ss_pred CcCCCCcEEEEEEc-CCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce-EEEEEEC
Confidence 89998788888888 67888889999998873 578899999999986 6886 5666554
No 21
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=87.24 E-value=17 Score=32.75 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=17.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHH
Q psy1590 179 VQLYIDPLACIILSILTLYIVNP 201 (365)
Q Consensus 179 ~~~~iDpv~siiIa~~ii~~~~~ 201 (365)
..+.+||++-.+++..++..=|-
T Consensus 189 lN~~L~pi~l~IiGav~lalRfy 211 (226)
T COG4858 189 LNPQLPPIALTIIGAVILALRFY 211 (226)
T ss_pred CCcCCchHHHHHHHHHHHHHHHH
Confidence 44679999999999888765544
No 22
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=86.06 E-value=9 Score=30.31 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=36.7
Q ss_pred eC-CEEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEEeeeecCCC
Q psy1590 284 ES-NRIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTIQPEFLDLN 331 (365)
Q Consensus 284 ~g-~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI~ve~~~~~ 331 (365)
.+ +.+.+++.+..+.......+.+.+++.++++ |+..+.|.+......
T Consensus 34 ~~~~~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~~~~~~ 83 (99)
T TIGR02945 34 DDDGHVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELVWDPPW 83 (99)
T ss_pred CCCCeEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEEeeCCC
Confidence 54 6777777776676677888999999999885 888888887754443
No 23
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=81.12 E-value=6.9 Score=28.98 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=32.2
Q ss_pred eeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEE
Q psy1590 275 IHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTI 323 (365)
Q Consensus 275 v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI 323 (365)
+.++.+ .++++.+++.+..+.......+.+++++.++.+ |+.+|.|
T Consensus 26 V~~i~i---~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 26 VRDISI---EGGKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE---CTCEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred eeEEEE---ECCEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 344444 678887777666555578899999999999986 8887765
No 24
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=80.34 E-value=15 Score=32.64 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=39.5
Q ss_pred eeeEEEEEEeeCC--EEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEEeeeecC
Q psy1590 274 SIHEFHVWQLESN--RIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTIQPEFLD 329 (365)
Q Consensus 274 ~v~~~~~~~~~g~--~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI~ve~~~ 329 (365)
-|+++.+....++ ++.+++.+..+.......+.+.+++.++++ ++.+|.|++....
T Consensus 99 lV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l~~dp 157 (174)
T TIGR03406 99 LVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVELVFDP 157 (174)
T ss_pred CeEEEEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEEecC
Confidence 3455555331113 677777777766688888999999999985 8988888877544
No 25
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=77.89 E-value=15 Score=29.35 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=32.7
Q ss_pred EEEEEEee-CCEEEEEEEEEECCCccHHHHHHHHH----HHHhhc---CCceEEEeee
Q psy1590 277 EFHVWQLE-SNRIIATLHIKFHDKQKYIELHKKIQ----CFFHGL---GVHSVTIQPE 326 (365)
Q Consensus 277 ~~~~~~~~-g~~~~v~i~i~v~~~~~~~~i~~~i~----~~l~~~---~v~~vtI~ve 326 (365)
.+++.. . ++.+.+++++.+..+.+..++.++++ +.++++ .+.+|.|+++
T Consensus 49 ~v~v~~-~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 49 GVKVEV-DEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred CeEEEE-ccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 355554 4 88899999999998866555555554 445443 4666777665
No 26
>KOG1483|consensus
Probab=76.58 E-value=21 Score=35.60 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=51.8
Q ss_pred ccCccchhH---HhHHHHHHHHHHHHHHHHHh------hcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1590 143 SRLSVLVNA---VSITDGLGAIMLVLSSICIS------HFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQS 213 (365)
Q Consensus 143 ~~~s~~l~A---~~~~D~l~si~vlia~i~~~------~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~ 213 (365)
-.+|..+.| |.++|+++=++.+.++=..+ .-.||. ..|.+++++-++++....+.++.|++...+.-
T Consensus 31 v~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~----rAEilGalvN~ifl~alc~~I~~EA~~R~I~p 106 (404)
T KOG1483|consen 31 VTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWA----RAEILGALVNAIFLTALCVSILIEAIERIIEP 106 (404)
T ss_pred ccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchh----HHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCC
Confidence 345777775 99999998777777733221 013444 69999999999999999999999999999875
Q ss_pred C
Q psy1590 214 T 214 (365)
Q Consensus 214 ~ 214 (365)
.
T Consensus 107 ~ 107 (404)
T KOG1483|consen 107 H 107 (404)
T ss_pred c
Confidence 3
No 27
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=73.89 E-value=14 Score=31.97 Aligned_cols=44 Identities=11% Similarity=0.259 Sum_probs=34.3
Q ss_pred eCCEEEEEEEEEECCCccHHHHHHHHHHHHhhcCCceEEEeeee
Q psy1590 284 ESNRIIATLHIKFHDKQKYIELHKKIQCFFHGLGVHSVTIQPEF 327 (365)
Q Consensus 284 ~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~~v~~vtI~ve~ 327 (365)
.++++.+++.+..+.....+.|.+.+++.|++.|+..|.|++.-
T Consensus 23 ~gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~ 66 (146)
T TIGR02159 23 DGGGVVVKFTPTYSGCPALEVIRQDIRDAVRALGVEVVEVSTSL 66 (146)
T ss_pred ECCEEEEEEEeCCCCCchHHHHHHHHHHHHHhcCCCeEEEeEee
Confidence 56777777777776667788899999999987788777776653
No 28
>KOG1484|consensus
Probab=71.68 E-value=14 Score=36.24 Aligned_cols=63 Identities=13% Similarity=0.256 Sum_probs=54.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy1590 39 SYLMFSNVVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSPVK 107 (365)
Q Consensus 39 alhsl~D~~s~~~~l~~l~~s~r~~~~~pyG~~r~E~l~~li~~i~ll~~~~~il~~ai~~l~~~~~~~ 107 (365)
-+|-++|.+.++...++..+.+. |||.-+||+.+++.+++++...+=++.++..-++.-.|+.
T Consensus 211 fLHVLaDtlgSvGviist~Li~~------~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~tPp~ 273 (354)
T KOG1484|consen 211 FLHVLADTLGSVGVIISTLLIKL------FGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQRTPPH 273 (354)
T ss_pred hHHHHHHHhcchHHHHHHHHHHh------cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 36888999888888888888875 8999999999999999999999999999999998755443
No 29
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=69.40 E-value=40 Score=26.52 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=37.6
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEE
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTI 323 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI 323 (365)
.++-..+++....-+..+-..+.+.+.++++. .-.+.+++.+++. ||.++.|
T Consensus 30 ~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~---g~td~lee~i~~ve~V~svev 82 (88)
T TIGR00489 30 IPEGVEIRKIDEEPIAFGLVAINVMVVMGDAE---GGTEAAEESLSGIEGVESVEV 82 (88)
T ss_pred CcCCcEEeeeEEEeeeccceeeEEEEEEecCC---cChHHHHHHHhcCCCccEEEE
Confidence 56656778777777888889999999998772 2225667777775 7876655
No 30
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.69 E-value=37 Score=25.14 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=36.2
Q ss_pred eeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhcCCceEEEe
Q psy1590 274 SIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGLGVHSVTIQ 324 (365)
Q Consensus 274 ~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~~v~~vtI~ 324 (365)
++.+++.... ++.+...+.+.++++.+..++.+.++..-+++++. +.++
T Consensus 26 nI~dl~~~~~-~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l~l~-i~~~ 74 (75)
T cd04870 26 RILDVGQAVI-HGRLSLGILVQIPDSADSEALLKDLLFKAHELGLQ-VRFE 74 (75)
T ss_pred CEEecccEEE-cCeeEEEEEEEcCCCCCHHHHHHHHHHHHHHcCce-EEEe
Confidence 6777776663 67788888888887777888888888877777663 4443
No 31
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=63.18 E-value=76 Score=30.92 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=32.4
Q ss_pred cCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1590 173 FDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQ 216 (365)
Q Consensus 173 ~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~ 216 (365)
..+.+ ++-++.++++++++.|.++.+.-.--.+++.-.++
T Consensus 104 ~~~ip----~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l~~~ 143 (356)
T COG4956 104 LLPIP----FISTIIPVILTIILAYFGFQLADKKRDEFLRLLNP 143 (356)
T ss_pred hCCcc----HHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHhcch
Confidence 45666 89999999999999999999988777777765543
No 32
>PF06649 DUF1161: Protein of unknown function (DUF1161); InterPro: IPR010595 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=58.05 E-value=19 Score=25.35 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhcCCceEEEeeeecCCCC-CcCcccCccc
Q psy1590 303 IELHKKIQCFFHGLGVHSVTIQPEFLDLNS-SANNRQSHCE 342 (365)
Q Consensus 303 ~~i~~~i~~~l~~~~v~~vtI~ve~~~~~~-~~~~~~~~~~ 342 (365)
+++.++|+..+...||.+-|+.+-|.+... ..+-.-++|+
T Consensus 2 E~lk~eI~~KI~anGV~~ftLeiV~nd~~~~~~~~VVG~Ce 42 (52)
T PF06649_consen 2 EELKAEIEQKIIANGVSSFTLEIVPNDQADQAGGQVVGSCE 42 (52)
T ss_pred hHHHHHHHHHHHHcCCCceEEEEeeCcccccCCCeEEEEcC
Confidence 467888888888889999999999987765 3344667776
No 33
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=57.10 E-value=92 Score=24.31 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=29.1
Q ss_pred HhHHHHHHHH-HHHHHHHHHhhcCCCccccccchhh---HHHHHHHHHHHHHHHHHH
Q psy1590 152 VSITDGLGAI-MLVLSSICISHFDDNQFVQLYIDPL---ACIILSILTLYIVNPLLK 204 (365)
Q Consensus 152 ~~~~D~l~si-~vlia~i~~~~~~g~~~~~~~iDpv---~siiIa~~ii~~~~~llk 204 (365)
+-..|.+-|. +.+.+.+++ +.||- +||+ .-++.+...++-+++.+|
T Consensus 33 ~Rd~D~~fs~vgLl~g~IL~--~~gwR-----ldp~ll~~Q~l~~~~~i~f~~e~ir 82 (84)
T PF07444_consen 33 SRDYDIFFSSVGLLYGLILW--FQGWR-----LDPILLFGQMLLVGLLIFFGWETIR 82 (84)
T ss_pred hhhhhHHHHHHHHHHHHHHH--HHhhc-----ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445655554 444447777 66774 8999 556666777777776554
No 34
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=55.10 E-value=85 Score=27.38 Aligned_cols=54 Identities=9% Similarity=0.154 Sum_probs=39.9
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhc--CCceEEEeeee
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGL--GVHSVTIQPEF 327 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~--~v~~vtI~ve~ 327 (365)
++||.+. .+-- .++..+|-+.+.-+ .....++.++|++.+++. ++.+|.|--+|
T Consensus 87 ~~~V~~A---~vvv-~~~~a~Vav~~~~~-~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~ 142 (177)
T PF09580_consen 87 VPGVEDA---TVVV-TDDNAYVAVDLDFN-RFNTKKIKKKVEKAVKSADPRIYNVYVSTDP 142 (177)
T ss_pred CCCceEE---EEEE-ECCEEEEEEEeccc-ccchhHHHHHHHHHHHHhCCCccEEEEEcCH
Confidence 7777554 4444 58899998888833 678889999999999974 55777765554
No 35
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=54.87 E-value=77 Score=23.41 Aligned_cols=50 Identities=10% Similarity=0.202 Sum_probs=33.9
Q ss_pred eeeEEEEEEee-----CCEEEEEEEEEECCCccHHHHHHHHHHHHhhcCCceEEEe
Q psy1590 274 SIHEFHVWQLE-----SNRIIATLHIKFHDKQKYIELHKKIQCFFHGLGVHSVTIQ 324 (365)
Q Consensus 274 ~v~~~~~~~~~-----g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~~v~~vtI~ 324 (365)
+|.++...... .+.+...+.+.++++.+..++.+.++..-+++++. +.++
T Consensus 26 nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~~~~~~~-~~~~ 80 (81)
T cd04869 26 NIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCDDLNVD-ISLE 80 (81)
T ss_pred CeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHHHHhcce-EEec
Confidence 56666665421 26677888888887667888888888766677654 4444
No 36
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=52.68 E-value=17 Score=38.15 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=52.0
Q ss_pred hhhcccccccc-----CCcccccccccccccccc---ccceeeeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHH
Q psy1590 240 EFLAEDKCFDF-----DSINTATHRCAGIEKETY---KDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQC 311 (365)
Q Consensus 240 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~ 311 (365)
+..+||+-||+ |-+|..|||.++.+.|+. .|+|.+.--+=.=. ...--.+-..|.+.++.+..++.+++++
T Consensus 404 ~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd-~~kg~~v~afVvL~~g~~~~~L~~ei~~ 482 (528)
T COG0365 404 AERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPD-PGKGQIVLAFVVLAAGVEPNELAEEIRR 482 (528)
T ss_pred eEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccC-CCCCcEEEEEEEecCCCChHHHHHHHHH
Confidence 56788999999 899999999999999994 56665443333311 1111226667777777333389999988
Q ss_pred HHhh
Q psy1590 312 FFHG 315 (365)
Q Consensus 312 ~l~~ 315 (365)
.+++
T Consensus 483 ~vr~ 486 (528)
T COG0365 483 HVAR 486 (528)
T ss_pred HHHh
Confidence 8854
No 37
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=51.50 E-value=1.1e+02 Score=24.07 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=35.9
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEECCC-ccHHHHHHHHHHHHhhc-CCceEEE
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDK-QKYIELHKKIQCFFHGL-GVHSVTI 323 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~-~~~~~i~~~i~~~l~~~-~v~~vtI 323 (365)
.++-..++....--+..+-..+.+.+.++++ ... +.+++.+++. +|.++.|
T Consensus 30 ~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~~~~t----d~lee~i~~~e~Vqsvei 82 (88)
T PRK00435 30 LPEGYKINGIEEEPIAFGLKALKLYVIMPDEEGGT----EPVEEAFANVEGVESVEV 82 (88)
T ss_pred CcCCcEEeEeEEEEeeccceeEEEEEEEEcCCcCc----HHHHHHHhccCCCcEEEE
Confidence 5555577777777778888888899988877 333 5556666765 6776654
No 38
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=49.61 E-value=1.1e+02 Score=23.21 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=31.8
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEEeeeecC
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTIQPEFLD 329 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI~ve~~~ 329 (365)
+||+ ++|... ..+++++.+.- .+..++.+.+++ ++++ ||.++..-.+..+
T Consensus 27 ~~gv----EVh~~~-~~GKiVVtiE~-----~~~~~~~~~~~~-i~~l~GVlsa~lvYh~~e 77 (79)
T PF03927_consen 27 IPGV----EVHAVD-EDGKIVVTIEA-----ESSEEEVDLIDA-INALPGVLSASLVYHYFE 77 (79)
T ss_dssp STTE----EEEEEE-TTTEEEEEEEE-----SSHHHHHHHHHH-HCCSTTEEEEEESSEE-S
T ss_pred CCCc----EEEeeC-CCCeEEEEEEe-----CChHHHHHHHHH-HHcCCCceEEEEEEEEec
Confidence 8998 566655 44888876632 455666666653 6765 8887776555443
No 39
>PRK11670 antiporter inner membrane protein; Provisional
Probab=46.75 E-value=1.1e+02 Score=30.33 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=33.8
Q ss_pred eCCEEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEEeeee
Q psy1590 284 ESNRIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTIQPEF 327 (365)
Q Consensus 284 ~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI~ve~ 327 (365)
.++.+.+++++..+.....+.+.+++++.++++ |+..+++.+..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (369)
T PRK11670 45 LDDTLHIELVMPFVWNSAFEELKEQCSAELLRITGAKAIDWKLSH 89 (369)
T ss_pred eCCEEEEEEEECCCCchHHHHHHHHHHHHHHhcCCCceEEEEEee
Confidence 567777777666665567788999999999986 88888877664
No 40
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=46.62 E-value=1.1e+02 Score=22.63 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=32.4
Q ss_pred eeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhcCC
Q psy1590 274 SIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGLGV 318 (365)
Q Consensus 274 ~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~~v 318 (365)
++-+++... -++.+...+.++++++ +..++.+.+++.-+++|.
T Consensus 29 ni~d~~~~~-~~~~f~~~~~v~~~~~-~~~~l~~~L~~l~~~~~l 71 (76)
T PF13740_consen 29 NIEDSRQAV-LGGRFTLIMLVSIPED-SLERLESALEELAEELGL 71 (76)
T ss_dssp EEEEEEEEE-ETTEEEEEEEEEESHH-HHHHHHHHHHHHHHHTT-
T ss_pred cEEEEEEEE-EcCeEEEEEEEEeCcc-cHHHHHHHHHHHHHHCCc
Confidence 778888888 4888999999999854 666677777766666655
No 41
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=44.23 E-value=1.7e+02 Score=23.54 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.3
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q psy1590 68 YGWARVEILGVLINTVFLTGL 88 (365)
Q Consensus 68 yG~~r~E~l~~li~~i~ll~~ 88 (365)
=||+|.|...+++.++++.+.
T Consensus 77 PGYGr~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 77 PGYGRIETVIGLIIALLIYLL 97 (99)
T ss_pred CCCCeehhhhhHHHHHHHHHH
Confidence 488899999999888877654
No 42
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=43.49 E-value=1.9e+02 Score=32.37 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=28.3
Q ss_pred EEEEEEEEECCC---c---cHHHHHHHHHHHHhhc-CCceEEEeee
Q psy1590 288 IIATLHIKFHDK---Q---KYIELHKKIQCFFHGL-GVHSVTIQPE 326 (365)
Q Consensus 288 ~~v~i~i~v~~~---~---~~~~i~~~i~~~l~~~-~v~~vtI~ve 326 (365)
-..+-.|+++|. . ..+++.+++++.++++ |+...+-||-
T Consensus 612 n~~et~I~Lkp~~eW~~~~t~~~lie~l~~~~~~lpG~~~~~tqPI 657 (1027)
T COG3696 612 NMIETFIELKPQEEWKDKKTRDELIEELRKTLEQLPGLANSFTQPI 657 (1027)
T ss_pred ccceeeEEecchhhCCCcccHHHHHHHHHHHHHhCCCcccccccch
Confidence 567777888655 3 3788999999999976 7765555543
No 43
>KOG1175|consensus
Probab=43.10 E-value=23 Score=37.85 Aligned_cols=79 Identities=16% Similarity=0.105 Sum_probs=51.8
Q ss_pred chhhhh---hhcccccccc-----CCccccccccccccccccccceeeeeEEEEEE----eeCCEEEEEEEEEECCC-cc
Q psy1590 235 IISIHE---FLAEDKCFDF-----DSINTATHRCAGIEKETYKDDIISIHEFHVWQ----LESNRIIATLHIKFHDK-QK 301 (365)
Q Consensus 235 ~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~----~~g~~~~v~i~i~v~~~-~~ 301 (365)
++..|| ..++|+-+|+ |.+|..|||.+++++|+..-.-..|-|--+-. +.|+. +.+-|.+.++ .+
T Consensus 475 g~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~--v~aFvvl~~g~~~ 552 (626)
T KOG1175|consen 475 GYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEV--VLAFVVLKSGSHD 552 (626)
T ss_pred ceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeE--EEEEEEEcCCCCC
Confidence 444554 4568899999 99999999999999998533222333333332 12333 3344455555 77
Q ss_pred HHHHHHHHHHHHhh
Q psy1590 302 YIELHKKIQCFFHG 315 (365)
Q Consensus 302 ~~~i~~~i~~~l~~ 315 (365)
.+++.+++++.+++
T Consensus 553 ~~~L~kel~~~VR~ 566 (626)
T KOG1175|consen 553 PEQLTKELVKHVRS 566 (626)
T ss_pred hHHHHHHHHHHHHh
Confidence 88888888888875
No 44
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=42.25 E-value=22 Score=22.68 Aligned_cols=23 Identities=39% Similarity=0.783 Sum_probs=10.8
Q ss_pred cccCccccccccC--CCCccCCCCC
Q psy1590 336 NRQSHCEIQCPQN--GMLCQKSTCC 358 (365)
Q Consensus 336 ~~~~~~~~~~~~~--~~~~~~~~~~ 358 (365)
|+.-+|+-||+.+ ...||++--|
T Consensus 2 neghecqcqcgscknneqcqkscsc 26 (40)
T PF11403_consen 2 NEGHECQCQCGSCKNNEQCQKSCSC 26 (40)
T ss_dssp -SSS----SSSTTTT-TTSTTS-SS
T ss_pred CCCceeeeecCCccChHHHhhcCCC
Confidence 4566788888876 5668776444
No 45
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=42.12 E-value=92 Score=22.60 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH
Q psy1590 78 VLINTVFLTGLCFL---MVIHGVKRILEPSPVKEPKTILLIGIIGFIINI 124 (365)
Q Consensus 78 ~li~~i~ll~~~~~---il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~~ 124 (365)
-++.++.++..+.. .+.+.+.+.+.+.+.+...+.++-+.++.++-+
T Consensus 7 Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivGl 56 (59)
T PF11381_consen 7 LLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVGL 56 (59)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHHH
Confidence 34555555555554 344456777888877766666766777666554
No 46
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=40.48 E-value=1.2e+02 Score=23.25 Aligned_cols=55 Identities=5% Similarity=0.026 Sum_probs=32.2
Q ss_pred eeeEEEEEEeeCCEEEEEEEEEECCC--ccHHHHHHHHHHHHhh-cCCceEEEee--eecC
Q psy1590 274 SIHEFHVWQLESNRIIATLHIKFHDK--QKYIELHKKIQCFFHG-LGVHSVTIQP--EFLD 329 (365)
Q Consensus 274 ~v~~~~~~~~~g~~~~v~i~i~v~~~--~~~~~i~~~i~~~l~~-~~v~~vtI~v--e~~~ 329 (365)
.+.++.+.+ +.+.+.+.+|..-|+- .+--.-.+++++.|++ +++.+..|++ ++.+
T Consensus 19 gis~IeI~R-t~~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~~~~~~~i~v~~~~v~ 78 (81)
T cd02413 19 GYSGVEVRV-TPTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFNFPEGSVELYAEKVA 78 (81)
T ss_pred CeeeEEEEE-cCCeEEEEEEeCCCceEECCCchhHHHHHHHHHHHhCCCCCeEEEEEEEcc
Confidence 567788888 5888888888877654 2222222444445543 3445445555 6544
No 47
>PF01390 SEA: SEA domain; InterPro: IPR000082 SEA is an extracellular domain associated with O-glycosylation []. Proteins found to contain SEA-modules include, agrin, enterokinase, 63 kDa Strongylocentrotus purpuratus (Purple sea urchin) sperm protein, perlecan (heparan sulphate proteoglycan core, mucin 1 and the cell surface antigen, 114/A10, and two functionally uncharacterised, probably extracellular, Caenorhabditis elegans proteins. Despite the functional diversity of these adhesive proteins, a common denominator seems to be their existence in heavily glycosylated environments. In addition, the better characterised proteins all contain O-glycosidic-linked carbohydrates such as heparan sulphate that contribute considerably to their molecular masses. The common module might regulate or assist binding to neighbouring carbohydrate moieties. Enterokinase, the initiator of intestinal digestion, is a mosaic protease composed of a distinctive assortment of domains []. ; PDB: 2ACM_B 1IVZ_A 2E7V_A.
Probab=40.31 E-value=1.3e+02 Score=23.51 Aligned_cols=42 Identities=7% Similarity=0.188 Sum_probs=30.5
Q ss_pred eeeEEEEEEeeCCEEEEEEEEEECCC--ccHHHHHHHHHHHHhh
Q psy1590 274 SIHEFHVWQLESNRIIATLHIKFHDK--QKYIELHKKIQCFFHG 315 (365)
Q Consensus 274 ~v~~~~~~~~~g~~~~v~i~i~v~~~--~~~~~i~~~i~~~l~~ 315 (365)
....+++++...+.+.++..+.+.++ .....+.+.++..+++
T Consensus 52 ~~~~~~I~~f~~gsViv~~~~~f~~~~~~~~~~~~~~l~~~l~~ 95 (107)
T PF01390_consen 52 GFVGVTITSFRPGSVIVDFDVIFDPPSSAPPADIEEALQNALQQ 95 (107)
T ss_dssp TEEEEEEEEEEETEEEEEEEEEEETTT-S-HHHHHHHHHHHHCC
T ss_pred CcceEEEEEEECCCEEEEEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 44566666666678999999999544 5677788888888866
No 48
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=39.98 E-value=2.8e+02 Score=27.88 Aligned_cols=29 Identities=21% Similarity=0.024 Sum_probs=21.8
Q ss_pred hHHHHHhHHHHHHhHHHHHHHHHHHHHHh
Q psy1590 32 SVALIADSYLMFSNVVALAVACLSVIMSK 60 (365)
Q Consensus 32 S~ALlaDalhsl~D~~s~~~~l~~l~~s~ 60 (365)
+..+..|.++.....+...+.++.+.+.-
T Consensus 239 gp~lg~~~i~~~~~a~~ig~ilV~l~~~~ 267 (397)
T TIGR01129 239 GPSLGADSIEAGIKAGLIGLVLVLVFMIL 267 (397)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888877777777776665
No 49
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=38.62 E-value=3e+02 Score=30.29 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=19.2
Q ss_pred HHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC
Q psy1590 21 IIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK 62 (365)
Q Consensus 21 v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~ 62 (365)
.+..+..++.+..--.-|.+-.+.+++..+...+....+-..
T Consensus 97 ~~~~~~~~~~~~~~~~y~~~~~~~e~~l~~~l~~if~~~~~~ 138 (764)
T TIGR02865 97 AVYAIFGYLQNKLVTPLDFILSIVEASLSFVLYYIFNYSIPC 138 (764)
T ss_pred HHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444443322335555666665555555544444433
No 50
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=38.58 E-value=2.4e+02 Score=26.96 Aligned_cols=53 Identities=11% Similarity=0.212 Sum_probs=33.0
Q ss_pred EEEEEEeeCCEEEEEEEEEECCC---ccHHHHHHHHHHHHhhcCCc----eEEEeeeecC
Q psy1590 277 EFHVWQLESNRIIATLHIKFHDK---QKYIELHKKIQCFFHGLGVH----SVTIQPEFLD 329 (365)
Q Consensus 277 ~~~~~~~~g~~~~v~i~i~v~~~---~~~~~i~~~i~~~l~~~~v~----~vtI~ve~~~ 329 (365)
.+.+...+.+.+...+..-+++. ....++.+++++.|++.|++ .-+++.++.+
T Consensus 222 ~v~~~~~~dssi~~~v~~wv~~~~~~~~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~~~~ 281 (286)
T PRK10334 222 TVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVK 281 (286)
T ss_pred EEEEEeeeCceEEEEEEEEEecchhHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEeccCC
Confidence 35555666777777777766655 23466778888888765433 3355555433
No 51
>PLN02601 beta-carotene hydroxylase
Probab=35.31 E-value=4.1e+02 Score=25.48 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCchH--HHHHHHHHHHHHHHHHH
Q psy1590 51 VACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSPVKEPKT--ILLIGIIGFIINIIGLM 128 (365)
Q Consensus 51 ~~l~~l~~s~r~~~~~pyG~~r~E~l~~li~~i~ll~~~~~il~~ai~~l~~~~~~~~~~~--~l~i~~vslvv~~~~~~ 128 (365)
..-++-+.++|++++++|= +++...++-+...++..++--...-+++.+.+...+ .+.+.+.+.+...+..+
T Consensus 79 ~~~~~~~~~~k~~er~ty~------~aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~~em~~~~al~lgtfvgMEf~Aw 152 (303)
T PLN02601 79 TSRLLKKAEKKKSERFTYL------IAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGMEFWAR 152 (303)
T ss_pred HHHHHHHHHHhhhhhhHHH------HHHHHHhhcHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666776666665553 244444554555555444443334445554432211 12233445555565555
Q ss_pred HHHhc
Q psy1590 129 LFRDS 133 (365)
Q Consensus 129 ~~~~~ 133 (365)
+..++
T Consensus 153 ~aHKY 157 (303)
T PLN02601 153 WAHRA 157 (303)
T ss_pred HHHHH
Confidence 54443
No 52
>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]
Probab=34.77 E-value=2.3e+02 Score=22.34 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=30.7
Q ss_pred eeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEE
Q psy1590 274 SIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTI 323 (365)
Q Consensus 274 ~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI 323 (365)
.++......+.-+-..+.+.+.++++. .-.+++++.|++. ||.++-+
T Consensus 35 ~~~~~~~epIaFGLkal~l~vvv~D~E---g~td~~ee~l~~vegV~svev 82 (88)
T COG2092 35 ELIKIEEEPIAFGLKALKLYVVVEDKE---GGTDALEEALEEVEGVESVEV 82 (88)
T ss_pred eeccceeEeeeeeeeeEEEEEEEcccc---cCcHHHHHHHhhccCcceEEE
Confidence 444555556667778888888885542 2446777788875 7876543
No 53
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=34.70 E-value=5.2e+02 Score=27.02 Aligned_cols=85 Identities=21% Similarity=0.197 Sum_probs=46.6
Q ss_pred hHHHHHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCchH
Q psy1590 32 SVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSPVKEPKT 111 (365)
Q Consensus 32 S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~~~~~pyG~~r~E~l~~li~~i~ll~~~~~il~~ai~~l~~~~~~~~~~~ 111 (365)
+..|-+|++....-+....+.++.+.+.-. +| +.+++..+.+++ ...+++. +-.++ +-...-|.+
T Consensus 334 gpsLG~~~i~~gi~Agl~g~~~V~vfm~~~---------Yr---~~Gvia~ial~~-n~~lil~-vls~l-gatLtLpgI 398 (506)
T COG0342 334 GPTLGADSIKAGLIAGLIGLALVAVFMLLY---------YR---LAGVIAAIALGL-NGVLILA-VLSLL-GATLTLPGI 398 (506)
T ss_pred CcccChHHHHHHHHHHHHHHHHHHHHHHHH---------HH---HhHHHHHHHHHH-HHHHHHH-HHHHh-cccccchhh
Confidence 345667777777777666666666655542 33 233333333333 2222222 22233 555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy1590 112 ILLIGIIGFIINIIGLMLFRD 132 (365)
Q Consensus 112 ~l~i~~vslvv~~~~~~~~~~ 132 (365)
+-++..+++.+..- ...+.|
T Consensus 399 AGiILtIGmaVDaN-VlI~ER 418 (506)
T COG0342 399 AGIILTIGMAVDAN-VLIFER 418 (506)
T ss_pred hHHHHhhhhccccc-EEeeHH
Confidence 77778888887763 334443
No 54
>PRK10263 DNA translocase FtsK; Provisional
Probab=34.47 E-value=8.4e+02 Score=28.81 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=10.3
Q ss_pred HHHHhHHHHHHhHHHHHH
Q psy1590 34 ALIADSYLMFSNVVALAV 51 (365)
Q Consensus 34 ALlaDalhsl~D~~s~~~ 51 (365)
|.++|.+..++...+.++
T Consensus 69 A~LAD~L~~LFGl~AYLL 86 (1355)
T PRK10263 69 AWLADTLFFIFGVMAYTI 86 (1355)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 556666666666555433
No 55
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=33.67 E-value=3.7e+02 Score=24.41 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhcC--CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHH
Q psy1590 46 VVALAVACLSVIMSKKK--SIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIIN 123 (365)
Q Consensus 46 ~~s~~~~l~~l~~s~r~--~~~~pyG~~r~E~l~~li~~i~ll~~~~~il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~ 123 (365)
++..+..+.-.+...|+ |+.-.=|+.| .+.+...+++++++-. ....++ |...+.....+...+++.+.-
T Consensus 135 ~vgGfamy~my~y~yr~~ad~sqr~~~~K--~~lv~~~sm~lWi~v~-----i~t~~l-PtslN~~L~pi~l~IiGav~l 206 (226)
T COG4858 135 VVGGFAMYIMYYYAYRMRADNSQRPGTWK--YLLVAVLSMLLWIAVM-----IATVFL-PTSLNPQLPPIALTIIGAVIL 206 (226)
T ss_pred HhhhHHHHHHHHHHHHhhcccccCCchHH--HHHHHHHHHHHHHHHH-----HHHhhC-CCcCCcCCchHHHHHHHHHHH
Confidence 34444455556666666 4444445544 4444444444443322 233344 444443333344444444433
Q ss_pred HHHHHHHHhc
Q psy1590 124 IIGLMLFRDS 133 (365)
Q Consensus 124 ~~~~~~~~~~ 133 (365)
.+ -|++.++
T Consensus 207 al-Rfylkkk 215 (226)
T COG4858 207 AL-RFYLKKK 215 (226)
T ss_pred HH-HHHHHHh
Confidence 32 3444443
No 56
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=33.37 E-value=1.3e+02 Score=25.44 Aligned_cols=46 Identities=4% Similarity=-0.090 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHH---HHHhHHHHHHhHHHHHHHHHH
Q psy1590 10 LFMFVGTFSYFIIEITYGYKLNSVA---LIADSYLMFSNVVALAVACLS 55 (365)
Q Consensus 10 ~i~l~~nl~l~v~kl~~g~~s~S~A---LlaDalhsl~D~~s~~~~l~~ 55 (365)
-+++++|++++++...++.+..+.. -..++..-+..++..++.+++
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvA 126 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVA 126 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 3577888888777766655543332 235555555555555555444
No 57
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=32.90 E-value=1.8e+02 Score=20.71 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=26.8
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEEee
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTIQP 325 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI~v 325 (365)
.|+|..++ .++| .+-.-+++.+++ ..++.+-+.+.+++. |+.++...+
T Consensus 22 ~p~V~~~~-----~vtG-~~d~~~~v~~~d---~~~l~~~i~~~l~~~~gV~~~~t~i 70 (74)
T PF01037_consen 22 IPEVVECY-----SVTG-EYDLILKVRARD---MEELEEFIREKLRSIPGVRRTETSI 70 (74)
T ss_dssp STTEEEEE-----EESS-SSSEEEEEEESS---HHHHHHHHHHTHHTSTTEEEEEEEE
T ss_pred CCCEEEEE-----EEeC-CCCEEEEEEECC---HHHHHHHHHHHhhcCCCEEEEEEEE
Confidence 89986664 3333 333344455544 455555555556765 777665543
No 58
>cd02412 30S_S3_KH K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=32.28 E-value=2.1e+02 Score=23.07 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=35.1
Q ss_pred eeeEEEEEEeeCCEEEEEEEEEECCC--ccHHHHHHHHHHHHhh-cCCceEEEeeeecC
Q psy1590 274 SIHEFHVWQLESNRIIATLHIKFHDK--QKYIELHKKIQCFFHG-LGVHSVTIQPEFLD 329 (365)
Q Consensus 274 ~v~~~~~~~~~g~~~~v~i~i~v~~~--~~~~~i~~~i~~~l~~-~~v~~vtI~ve~~~ 329 (365)
.+.++.+.+ ..+.+.++++..-|+- .+--.-.+++++.+++ ++...+.|++....
T Consensus 50 gis~I~I~R-~~~~i~I~I~t~rPg~vIG~~G~~i~~L~~~l~~~~~~~~~~I~V~ev~ 107 (109)
T cd02412 50 GISRIEIER-KADRVEVTIHTARPGIIIGKKGAGIEKLRKELQKLLGNKKVRINIVEVK 107 (109)
T ss_pred CccEEEEEE-cCCCEEEEEEeCCCCcccCCchHHHHHHHHHHHHHhCCCceEEEEEEec
Confidence 445777888 5778888888877655 3333444666666665 34345777776543
No 59
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=31.99 E-value=3.3e+02 Score=28.41 Aligned_cols=30 Identities=20% Similarity=-0.029 Sum_probs=24.0
Q ss_pred hHHHHHhHHHHHHhHHHHHHHHHHHHHHhc
Q psy1590 32 SVALIADSYLMFSNVVALAVACLSVIMSKK 61 (365)
Q Consensus 32 S~ALlaDalhsl~D~~s~~~~l~~l~~s~r 61 (365)
+..+-.|++++...++...+.++.+.+.-+
T Consensus 324 gpslG~~~i~~~~~A~lig~ilV~i~m~~~ 353 (498)
T PRK05812 324 GPSLGADSIRAGLIAGLIGLALVLLFMILY 353 (498)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999888888888888777753
No 60
>COG1279 Lysine efflux permease [General function prediction only]
Probab=31.80 E-value=1.3e+02 Score=27.46 Aligned_cols=65 Identities=12% Similarity=-0.041 Sum_probs=44.4
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Q psy1590 152 VSITDGLGAIMLVLSSICISHFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPE 222 (365)
Q Consensus 152 ~~~~D~l~si~vlia~i~~~~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~~~~~~~ 222 (365)
..++|.+.-..-..++... ....+ |+.++.-..=++++++.|+..+|++.+.-.+..+.+....+
T Consensus 43 c~i~D~~Li~~gv~G~~~l--i~~~p----~l~~i~~~~G~~FLl~yg~~a~~~a~~~~~~~~~~~~~~~~ 107 (202)
T COG1279 43 CAISDIVLISAGVFGVGAL--IAKSP----WLLLIVRWGGAAFLLYYGLLALKSAPRGPSQLQVAEFTKLK 107 (202)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhCH----HHHHHHHHHHHHHHHHHHHHHHHhhccchhhcccccccccc
Confidence 8888877665555552222 22233 89999999999999999999999999953333333333344
No 61
>PF10002 DUF2243: Predicted membrane protein (DUF2243); InterPro: IPR018719 This entry includes membrane proteins of unknown function.
Probab=31.78 E-value=3.4e+02 Score=23.40 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=40.6
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1590 33 VALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVK 98 (365)
Q Consensus 33 ~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~i~ll~~~~~il~~ai~ 98 (365)
.-+++||+...+.-+.....++-+..+.+. +...+ .....+.+++..+.+-++|++-
T Consensus 43 ~n~~~DGLFHa~~~~~~~~Gl~lL~r~~~r~~~~~~---------~~~~~g~~l~G~G~Fnl~dG~v 100 (143)
T PF10002_consen 43 LNLLSDGLFHAFTWVATVAGLFLLWRADRRRRRPWS---------GRRLWGGVLLGWGLFNLVDGVV 100 (143)
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCcc---------chhhHHHHHHHhhHHHHHHHHH
Confidence 678999999988888888887777755543 32222 2345666788888888888854
No 62
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=31.54 E-value=7.4e+02 Score=27.29 Aligned_cols=30 Identities=13% Similarity=-0.102 Sum_probs=23.6
Q ss_pred hHHHHHhHHHHHHhHHHHHHHHHHHHHHhc
Q psy1590 32 SVALIADSYLMFSNVVALAVACLSVIMSKK 61 (365)
Q Consensus 32 S~ALlaDalhsl~D~~s~~~~l~~l~~s~r 61 (365)
+.++..|+++.+.-++...+.++.+.+.-+
T Consensus 257 gptlg~~a~~~~~~a~~ial~lV~i~l~~~ 286 (755)
T PRK13024 257 GPTLGQDAIDAGIIAGIIGFALIFLFMLVY 286 (755)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999988888877777777777653
No 63
>PF15629 Perm-CXXC: Permuted single zf-CXXC unit
Probab=31.45 E-value=24 Score=22.33 Aligned_cols=17 Identities=29% Similarity=0.706 Sum_probs=13.7
Q ss_pred CCCCccCCCCCCCCCCC
Q psy1590 348 NGMLCQKSTCCGPQDFA 364 (365)
Q Consensus 348 ~~~~~~~~~~~~~~~~~ 364 (365)
++.+|.+++|+.=|...
T Consensus 10 ~gkLC~~~tCfsCNsiR 26 (32)
T PF15629_consen 10 SGKLCDEETCFSCNSIR 26 (32)
T ss_pred cccccCCccccccccHh
Confidence 38999999999876553
No 64
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=30.84 E-value=1.7e+02 Score=26.32 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=39.5
Q ss_pred eeeEEEEEEee-----CCEEEEEEEEEECCCccHHHHHHHHHHHHhhcCCceEEEeee
Q psy1590 274 SIHEFHVWQLE-----SNRIIATLHIKFHDKQKYIELHKKIQCFFHGLGVHSVTIQPE 326 (365)
Q Consensus 274 ~v~~~~~~~~~-----g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~~v~~vtI~ve 326 (365)
.|.+++.+... +..+.+.+.+.+|++.+..++.+.+++.-+++++. .++++.
T Consensus 122 NI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~eL~vd-~~l~~~ 178 (190)
T PRK11589 122 NIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCTELNAQ-GSINVV 178 (190)
T ss_pred ChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHHHhCce-EEEEEe
Confidence 77888887532 23688999999999988999999998888888663 455444
No 65
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=30.47 E-value=4e+02 Score=23.91 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhhc
Q psy1590 18 SYFIIEITYGYKLN 31 (365)
Q Consensus 18 ~l~v~kl~~g~~s~ 31 (365)
+++++..+.++++.
T Consensus 92 if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 92 IFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHhh
Confidence 34444444444434
No 66
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=28.94 E-value=3.4e+02 Score=22.53 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC
Q psy1590 19 YFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK 62 (365)
Q Consensus 19 l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~ 62 (365)
+=++-+++|...++.....|..--+.-++..++.++.++.-+|.
T Consensus 77 lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 77 LPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444455444444448888888888888888888887776
No 67
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=28.74 E-value=1e+02 Score=21.63 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=19.8
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy1590 63 SIRNTYGWARVEILGVLINTVFLTGLCFLMV 93 (365)
Q Consensus 63 ~~~~pyG~~r~E~l~~li~~i~ll~~~~~il 93 (365)
++.|.|-|..+.. ++++.+.+++++++.++
T Consensus 4 ~~pF~YDy~tLri-gGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 4 DDPFYYDYETLRI-GGLIFAGVLFILGILII 33 (50)
T ss_dssp CSGGGGCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCCCccchhHhhc-cchHHHHHHHHHHHHHH
Confidence 5667778877765 56666666666666544
No 68
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=27.98 E-value=4.5e+02 Score=23.62 Aligned_cols=31 Identities=10% Similarity=0.136 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy1590 77 GVLINTVFLTGLCFLMVIHGVKRILEPSPVK 107 (365)
Q Consensus 77 ~~li~~i~ll~~~~~il~~ai~~l~~~~~~~ 107 (365)
..+..-..+++.+++.+..++..++++....
T Consensus 79 ~~~~ld~~L~~~~if~~~~gi~~~f~~~~~~ 109 (206)
T PF06570_consen 79 WLMALDNSLLFFGIFSLLFGIMGFFSPKNSN 109 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3344445555567777778888888775443
No 69
>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.
Probab=27.76 E-value=3e+02 Score=21.52 Aligned_cols=51 Identities=18% Similarity=0.052 Sum_probs=32.6
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEECCC-ccHHHHHHHHHHHHhhc-CCceEEE
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDK-QKYIELHKKIQCFFHGL-GVHSVTI 323 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~-~~~~~i~~~i~~~l~~~-~v~~vtI 323 (365)
.++-....+.+.--+..+-..+.+.+.++++ ...+++.+++ ++. +|.++.|
T Consensus 30 ~~~gl~~~~~~~epiaFGlk~L~i~~vv~D~~~~td~lee~i----~~~d~VqsveI 82 (88)
T cd00292 30 LMDGLLWGKSKLEPIAFGLKALQIYCVVEDDEGGTDELEEAI----SEEDGVQSVDV 82 (88)
T ss_pred CcCCcEEEEEEEEEeeeEeeEEEEEEEEEeCCcCcHHHHHHH----hccCCceEEEE
Confidence 4544566777777777777788888888666 4455554444 433 6776554
No 70
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=27.72 E-value=2.6e+02 Score=20.75 Aligned_cols=48 Identities=8% Similarity=0.063 Sum_probs=30.3
Q ss_pred eeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhcCCceEEEe
Q psy1590 274 SIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGLGVHSVTIQ 324 (365)
Q Consensus 274 ~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~~v~~vtI~ 324 (365)
.|-+.+... .++.++.-+.++++. .+..++.+.++..-+++++. +.||
T Consensus 28 nI~d~~q~~-~~~~F~m~~~~~~~~-~~~~~l~~~l~~~~~~~~l~-i~v~ 75 (77)
T cd04893 28 NILDSRMAI-LGTEFALTMLVEGSW-DAIAKLEAALPGLARRLDLT-LMMK 75 (77)
T ss_pred CEEEceeeE-EcCEEEEEEEEEecc-ccHHHHHHHHHHHHHHcCCE-EEEE
Confidence 445555555 477778888888763 35667777777655566663 4443
No 71
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=27.54 E-value=6.9e+02 Score=27.61 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=42.1
Q ss_pred hHHHHHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCchH
Q psy1590 32 SVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSPVKEPKT 111 (365)
Q Consensus 32 S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~~~~~pyG~~r~E~l~~li~~i~ll~~~~~il~~ai~~l~~~~~~~~~~~ 111 (365)
+..|-.|......-+....+.++.+.+.-+ |+...+=...++...+++.+ ++-.++ +.+.+.+.+
T Consensus 269 gptLG~~~~~~~~~A~ii~~~lV~lfm~~~------Y~~~glia~iaL~~~v~~tl--------~~l~l~-g~~Lnl~si 333 (758)
T PRK13023 269 ASALGEDYASAAVLAALLAALVVGLFMVLS------YGILGVIALVALVVNIIILT--------AVLSLI-GASISLASI 333 (758)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH--------HHHHHH-CCCccHHHH
Confidence 567778888887777666666666666543 32212212222222222222 222333 445555556
Q ss_pred HHHHHHHHHHHHHH
Q psy1590 112 ILLIGIIGFIINII 125 (365)
Q Consensus 112 ~l~i~~vslvv~~~ 125 (365)
+-++..+++.++-.
T Consensus 334 aGlIL~IGm~VD~~ 347 (758)
T PRK13023 334 AGLVLTIGLAVDAH 347 (758)
T ss_pred HHHHHHHHHhccCc
Confidence 66777777777764
No 72
>COG1302 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.17 E-value=2.3e+02 Score=23.99 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=34.8
Q ss_pred EEEEEeeCCEEEEEEEEEECCCcc----HHHHHHHHHHHHhhc---CCceEEEeeeecC
Q psy1590 278 FHVWQLESNRIIATLHIKFHDKQK----YIELHKKIQCFFHGL---GVHSVTIQPEFLD 329 (365)
Q Consensus 278 ~~~~~~~g~~~~v~i~i~v~~~~~----~~~i~~~i~~~l~~~---~v~~vtI~ve~~~ 329 (365)
+.+....++.+.+++.|.+.=+.+ +..|.++++..++.. .+..+.||+.-..
T Consensus 57 V~Ve~~~~~~v~VDvyi~v~YGv~IpeVa~~Iq~~V~~~v~~mtgl~v~~VNV~V~gV~ 115 (131)
T COG1302 57 VKVEVGEDQSVAVDVYIIVEYGVKIPEVAENIQERVKEEVENMTGLKVVEVNVHVVGVK 115 (131)
T ss_pred eEEEecCCCcEEEEEEEEEecCCchHHHHHHHHHHHHHHHHHhhCCceEEEEEEEEEeE
Confidence 445553456699999999987744 555556666666543 6778888887543
No 73
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.48 E-value=4.9e+02 Score=23.60 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=12.0
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q psy1590 152 VSITDGLGAIMLVLSSICI 170 (365)
Q Consensus 152 ~~~~D~l~si~vlia~i~~ 170 (365)
-.++|.++...+++|++++
T Consensus 40 ATKa~TLGv~LILlgv~l~ 58 (197)
T PRK12585 40 AGISNTFGVSLLLFATVGY 58 (197)
T ss_pred cccchhhhHHHHHHHHHHH
Confidence 4566777777777774443
No 74
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=26.44 E-value=1.1e+02 Score=24.12 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=33.3
Q ss_pred CCEEEEEEEEEECCC-ccHHHHHHHHHHHHhhcCCceEEEeee
Q psy1590 285 SNRIIATLHIKFHDK-QKYIELHKKIQCFFHGLGVHSVTIQPE 326 (365)
Q Consensus 285 g~~~~v~i~i~v~~~-~~~~~i~~~i~~~l~~~~v~~vtI~ve 326 (365)
.+.+..-+.+..+++ .+..+++++++...+++|+. +.||.|
T Consensus 40 ~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~-V~vq~e 81 (90)
T COG3830 40 DGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVD-VRVQRE 81 (90)
T ss_pred hhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcE-EEEeeH
Confidence 456777788888766 88999999999999999885 777766
No 75
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=26.09 E-value=1.2e+02 Score=24.16 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=26.1
Q ss_pred EEEEECCC---ccHHHHHHHHHHHHhhcCCceEEEeeee
Q psy1590 292 LHIKFHDK---QKYIELHKKIQCFFHGLGVHSVTIQPEF 327 (365)
Q Consensus 292 i~i~v~~~---~~~~~i~~~i~~~l~~~~v~~vtI~ve~ 327 (365)
++|++... .--+.|++-+++.|+++||.++.|.++-
T Consensus 29 i~iel~S~V~kQfG~~Ir~~v~etL~~lgV~~~~v~v~D 67 (92)
T TIGR01608 29 IEIDLVSDVKKQFGDDIESTVKETLKLLGVENAVVKVVD 67 (92)
T ss_pred EEEEEEEHHHHHHhHHHHHHHHHHHHHcCCceEEEEEEe
Confidence 34444444 3356788888889999999999888873
No 76
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.20 E-value=1.7e+02 Score=22.20 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=33.5
Q ss_pred eeeEEEEEEeeCCEEEEEEEEEECC-CccHHHHHHHHHHHHhhcCCceEEEee
Q psy1590 274 SIHEFHVWQLESNRIIATLHIKFHD-KQKYIELHKKIQCFFHGLGVHSVTIQP 325 (365)
Q Consensus 274 ~v~~~~~~~~~g~~~~v~i~i~v~~-~~~~~~i~~~i~~~l~~~~v~~vtI~v 325 (365)
+|-++.... .++.+...+.+.+++ +.+..++.+.++..-+++++. +.++.
T Consensus 28 nI~~~~~~~-~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~-~~i~~ 78 (88)
T cd04872 28 NILDISQTI-MDGYFTMIMIVDISESNLDFAELQEELEELGKELGVK-IRIQH 78 (88)
T ss_pred CEEechhHh-hCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCE-EEEEh
Confidence 444444444 467888888888886 456778888887766677764 45543
No 77
>cd02411 archeal_30S_S3_KH K homology RNA-binding domain (KH) of the archaeal 30S small ribosomal subunit S3 protein. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=24.99 E-value=2.5e+02 Score=21.48 Aligned_cols=54 Identities=6% Similarity=0.015 Sum_probs=30.7
Q ss_pred eeeEEEEEEeeCCEEEEEEEEEECCC--ccHHHHHHHHHHHHhh-cCCceEEEeeeec
Q psy1590 274 SIHEFHVWQLESNRIIATLHIKFHDK--QKYIELHKKIQCFFHG-LGVHSVTIQPEFL 328 (365)
Q Consensus 274 ~v~~~~~~~~~g~~~~v~i~i~v~~~--~~~~~i~~~i~~~l~~-~~v~~vtI~ve~~ 328 (365)
.+.++.+.+ .++...+.+|..-|+- .+.-.-.++++..|++ ++..++.|.+...
T Consensus 27 gIs~IeI~r-~~~~i~V~I~t~~pg~iIGk~G~~I~~l~~~l~k~~~~~~v~I~v~ev 83 (85)
T cd02411 27 GYGGMEILR-TPLGTQITIYAERPGMVIGRGGKNIRELTEILETKFGLENPQIDVQEV 83 (85)
T ss_pred cccEEEEEE-cCCcEEEEEEECCCCceECCCchhHHHHHHHHHHHhCCCCceEEEEEe
Confidence 456677767 5777888888855443 2222222555555554 3544566666543
No 78
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.41 E-value=2.2e+02 Score=20.41 Aligned_cols=36 Identities=3% Similarity=0.094 Sum_probs=23.8
Q ss_pred eeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHH
Q psy1590 274 SIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKI 309 (365)
Q Consensus 274 ~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i 309 (365)
.+.++...+...+...+++.+++++......+.+++
T Consensus 26 nI~~v~~~~~~~~~~~~~~~vev~~~~~l~~i~~~L 61 (74)
T cd04887 26 DIGAIDLVEQGRDYTVRDITVDAPSEEHAETIVAAV 61 (74)
T ss_pred cEEEEEEEEecCCEEEEEEEEEcCCHHHHHHHHHHH
Confidence 455666655345778888888888776666555554
No 79
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=24.11 E-value=6e+02 Score=23.78 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1590 71 ARVEILGVLINTVFLTGLCFLMVIHGVKRIL 101 (365)
Q Consensus 71 ~r~E~l~~li~~i~ll~~~~~il~~ai~~l~ 101 (365)
.+.+...+++.++.+...-+.++-..+..++
T Consensus 39 ~~~~~~~~~~~s~~~~i~lF~~lP~~l~~~~ 69 (236)
T PF07136_consen 39 SSWEMALTVILSLALAIGLFVVLPTFLAGLL 69 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666555555555555555555
No 80
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.98 E-value=4e+02 Score=24.53 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=17.4
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy1590 63 SIRNTYGWARVEILGVLINTVFLTGLCFL 91 (365)
Q Consensus 63 ~~~~pyG~~r~E~l~~li~~i~ll~~~~~ 91 (365)
..++..+..++|.+..++-+++++++++.
T Consensus 51 ~~~~~~~~~~lE~~WtviP~iil~~l~~~ 79 (228)
T MTH00140 51 SCRTILEAQKLETIWTIVPALILVFLALP 79 (228)
T ss_pred CCccccccchhhhhhhhHHHHHHHHHHHH
Confidence 44455677777777766666555554433
No 81
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=23.96 E-value=3.3e+02 Score=22.43 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCCCCchHHHHHHHHHHH
Q psy1590 75 ILGVLINTVFLTGLCFLMVIHGVKRILEP--SPVKEPKTILLIGIIGFI 121 (365)
Q Consensus 75 ~l~~li~~i~ll~~~~~il~~ai~~l~~~--~~~~~~~~~l~i~~vslv 121 (365)
+.=+...+++|+++|..++.-+.--+.++ ++.......++++++.++
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fI 88 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFI 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHh
Confidence 45566666677777777666666655554 233223333444444443
No 82
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=23.93 E-value=3.6e+02 Score=21.89 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=24.0
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEEC
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFH 297 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~ 297 (365)
-|-+.+|.++-+.. .++.+.++++|...
T Consensus 81 d~rI~~V~~f~f~~-~~~~l~v~f~V~ti 108 (112)
T PF10934_consen 81 DPRITSVENFSFEW-EGDSLYVSFTVTTI 108 (112)
T ss_pred CCCcceEEEEEEEE-ECCEEEEEEEEEEe
Confidence 68899999999977 79999999988654
No 83
>KOG1482|consensus
Probab=23.78 E-value=5.3e+02 Score=25.85 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=51.3
Q ss_pred cccCccchh--H-HhHHHHHHHHHHHHHHHHHh------hcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1590 142 TSRLSVLVN--A-VSITDGLGAIMLVLSSICIS------HFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQ 212 (365)
Q Consensus 142 k~~~s~~l~--A-~~~~D~l~si~vlia~i~~~------~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~ 212 (365)
...+|-++. | |.+.|..+-+..++++.... -.+||. -+|.+++++-...|......++.+++..++.
T Consensus 94 ~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~----R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s 169 (379)
T KOG1482|consen 94 YKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFH----RAEVLGALVSVLLIWVVTGVLVYEAIQRLLS 169 (379)
T ss_pred eeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceeccee----hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhc
Confidence 566677776 3 99999998888888833221 013444 6899998888888888888899999998887
Q ss_pred CC
Q psy1590 213 ST 214 (365)
Q Consensus 213 ~~ 214 (365)
..
T Consensus 170 ~~ 171 (379)
T KOG1482|consen 170 GD 171 (379)
T ss_pred Cc
Confidence 65
No 84
>PRK00194 hypothetical protein; Validated
Probab=23.77 E-value=2e+02 Score=21.76 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=32.4
Q ss_pred eeeEEEEEEeeCCEEEEEEEEEECC-CccHHHHHHHHHHHHhhcCCceEEEeee
Q psy1590 274 SIHEFHVWQLESNRIIATLHIKFHD-KQKYIELHKKIQCFFHGLGVHSVTIQPE 326 (365)
Q Consensus 274 ~v~~~~~~~~~g~~~~v~i~i~v~~-~~~~~~i~~~i~~~l~~~~v~~vtI~ve 326 (365)
+|.+++... .++.....+.+.+++ +.+..++.+.+++.-+++++. +.+|.+
T Consensus 30 nI~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~-~~~~~~ 81 (90)
T PRK00194 30 NILDISQTI-MDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK-IRIQHE 81 (90)
T ss_pred CEEehhhHh-hCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE-EEEEhH
Confidence 444454444 467788877888876 355677777777655566664 555544
No 85
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=23.72 E-value=9.3e+02 Score=25.85 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=22.5
Q ss_pred hHHHHHhHHHHHHhHHHHHHHHHHHHHHh
Q psy1590 32 SVALIADSYLMFSNVVALAVACLSVIMSK 60 (365)
Q Consensus 32 S~ALlaDalhsl~D~~s~~~~l~~l~~s~ 60 (365)
+.+|-+|.+++..-.+...+.++.+.+..
T Consensus 431 gpsLG~~~i~~gl~A~iig~vlV~lFm~~ 459 (604)
T PRK12933 431 GPSLGAENIENGFAALALGMGITLLFMAL 459 (604)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999888877777777776664
No 86
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=23.00 E-value=1.8e+02 Score=22.58 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=28.9
Q ss_pred eCCEEEEEEEEEECCCccHHHHHHHHHHHHhhc
Q psy1590 284 ESNRIIATLHIKFHDKQKYIELHKKIQCFFHGL 316 (365)
Q Consensus 284 ~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~ 316 (365)
..+...+++.+++.+..+.+++.+++++.+++.
T Consensus 75 ip~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~~ 107 (111)
T PF07687_consen 75 IPDEATLTVDIRYPPGEDLEEIKAEIEAAVEKI 107 (111)
T ss_dssp ESSEEEEEEEEEESTCHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEEECCCcchHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999998763
No 87
>KOG2877|consensus
Probab=22.65 E-value=8e+02 Score=24.72 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHHHHHHHHhccCcccccccccCccchhH---HhHHHHH
Q psy1590 83 VFLTGLCFLMVIHGVKRILEPSPVKE-PKTILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNA---VSITDGL 158 (365)
Q Consensus 83 i~ll~~~~~il~~ai~~l~~~~~~~~-~~~~l~i~~vslvv~~~~~~~~~~~~~~h~~~~k~~~s~~l~A---~~~~D~l 158 (365)
+.+++.++.++---+....+|.-.++ |.|......++ ++.++.-.+-.|-.+||++|+.=.+ ++=.|.+
T Consensus 56 ITL~Gl~~~v~~~Ll~~~ydP~~~~~~P~W~y~a~alg-------lFlYqTlDaiDGkQARRTnsSsPLGELFDHG~DS~ 128 (389)
T KOG2877|consen 56 ITLIGLIFNVITVLLLLYYDPNLDEPAPRWTYFAAALG-------LFLYQTLDAIDGKQARRTNSSSPLGELFDHGCDSI 128 (389)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCCCcHHHHHHHHH-------HHHHHhcccccchhhccCCCCCCcHhhhcccchhH
Confidence 34444444444444445567764433 55655554443 4455433221222235555433333 5556666
Q ss_pred HHHHHHHH
Q psy1590 159 GAIMLVLS 166 (365)
Q Consensus 159 ~si~vlia 166 (365)
+++-+.++
T Consensus 129 stvf~~l~ 136 (389)
T KOG2877|consen 129 STVFVTLA 136 (389)
T ss_pred HHHHHHHH
Confidence 66555544
No 88
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=22.35 E-value=4.2e+02 Score=21.41 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=38.4
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEEeeeecCC
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTIQPEFLDL 330 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI~ve~~~~ 330 (365)
..|-.+|.++.+-+.-...-.+.+.|.-++.+..++|..++++.=... ...+++..+-+.+.
T Consensus 28 ~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d~~~L~~Il~~L~~lga~~~~~~d~~l~~a~~d~ 90 (103)
T PF04455_consen 28 MGGDFEILEFDVGKSKDDTSYARLQVSAPDEEHLDEILDELHQLGAVPVEPQDAELEPAPKDG 90 (103)
T ss_dssp TT-EEEEEEEE--SSTTS-EEEEEEEEESSHHHHHHHHHHHHHHHHHSCCCCEEEECESSCTT
T ss_pred cCCCEEEEEEEeCCCCCCceeEEEEEecCCHHHHHHHHHHHHHHcCCCCCCcccEEEEcCCCC
Confidence 677778888888764344466777777777777888888887666553 45555555444443
No 89
>PRK11281 hypothetical protein; Provisional
Probab=21.09 E-value=1.3e+03 Score=26.70 Aligned_cols=28 Identities=0% Similarity=-0.096 Sum_probs=16.5
Q ss_pred EEEEEEEEECCCccHHHHHHHHHHHHhh
Q psy1590 288 IIATLHIKFHDKQKYIELHKKIQCFFHG 315 (365)
Q Consensus 288 ~~v~i~i~v~~~~~~~~i~~~i~~~l~~ 315 (365)
..+++++.+.-+.+.+.+.+-+.+..++
T Consensus 994 ~Rv~i~vgV~Y~sDi~~v~~iL~eaa~~ 1021 (1113)
T PRK11281 994 TRVVIKVGVAYGSDLEKVRELLLQAATE 1021 (1113)
T ss_pred eEEEEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 4566666666665666655555555543
No 90
>COG4035 Predicted membrane protein [Function unknown]
Probab=20.24 E-value=61 Score=25.70 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=16.0
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q psy1590 68 YGWARVEILGVLINTVFLTGL 88 (365)
Q Consensus 68 yG~~r~E~l~~li~~i~ll~~ 88 (365)
=||+|+|++.+-+.++.+++-
T Consensus 84 PGYGR~Etv~Gt~LA~l~wL~ 104 (108)
T COG4035 84 PGYGRVETVVGTFLAVLLWLY 104 (108)
T ss_pred CCCceeehhHHHHHHHHHHHh
Confidence 589999999997666666544
No 91
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=20.12 E-value=92 Score=21.57 Aligned_cols=19 Identities=21% Similarity=0.613 Sum_probs=14.4
Q ss_pred ccchhhHHHHHHHHHHHHH
Q psy1590 181 LYIDPLACIILSILTLYIV 199 (365)
Q Consensus 181 ~~iDpv~siiIa~~ii~~~ 199 (365)
.++||+.+++++..-.+.=
T Consensus 5 r~lDP~~av~iG~~ayyl~ 23 (47)
T PF11654_consen 5 RFLDPLFAVFIGTSAYYLY 23 (47)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 3799999999887655443
Done!