Query psy1590
Match_columns 365
No_of_seqs 160 out of 1425
Neff 7.3
Searched_HMMs 29240
Date Sat Aug 17 00:29:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 100.0 8.1E-52 2.8E-56 393.6 15.8 273 5-330 2-282 (283)
2 3j1z_P YIIP, cation efflux fam 100.0 2.3E-51 7.9E-56 394.6 14.3 273 6-331 12-292 (306)
3 3byp_A CZRB protein; membrane 99.4 1.7E-12 5.6E-17 102.4 9.0 83 209-331 1-89 (94)
4 2zzt_A Putative uncharacterize 99.2 1.9E-11 6.6E-16 98.9 7.5 80 211-330 1-87 (107)
5 3j1z_P YIIP, cation efflux fam 97.0 0.00027 9.3E-09 67.0 3.1 90 10-106 124-213 (306)
6 3h90_A Ferrous-iron efflux pum 97.0 0.00024 8.3E-09 66.5 2.6 91 9-106 114-204 (283)
7 3cq1_A Putative uncharacterize 83.4 2.8 9.5E-05 32.5 6.5 51 275-328 33-84 (103)
8 1uwd_A Hypothetical protein TM 79.1 4.3 0.00015 31.4 6.1 50 275-327 33-84 (103)
9 2jsx_A Protein NAPD; TAT, proo 77.3 15 0.00051 28.1 8.6 57 269-335 29-86 (95)
10 3lno_A Putative uncharacterize 75.2 5.6 0.00019 31.1 5.8 52 275-329 35-89 (108)
11 1zpv_A ACT domain protein; str 50.6 68 0.0023 23.1 8.0 51 274-326 32-82 (91)
12 3udc_A Small-conductance mecha 40.2 1.7E+02 0.0057 26.5 10.0 53 278-330 222-281 (285)
13 2vv5_A MSCS, small-conductance 39.6 96 0.0033 28.2 8.2 52 277-328 222-280 (286)
14 2cvi_A 75AA long hypothetical 39.3 1E+02 0.0035 21.9 6.9 49 269-327 25-75 (83)
15 2yy3_A Elongation factor 1-bet 38.1 1.3E+02 0.0044 22.7 7.5 51 269-323 32-85 (91)
16 1wh9_A 40S ribosomal protein S 37.7 99 0.0034 23.2 6.6 56 274-331 24-85 (92)
17 2zbc_A 83AA long hypothetical 34.1 1.1E+02 0.0038 21.4 6.3 48 269-326 25-74 (83)
18 3lax_A Phenylacetate-coenzyme 32.2 1.6E+02 0.0053 22.0 10.0 50 269-319 26-81 (109)
19 1aqs_A Cu-MT, Cu-metallothione 31.7 37 0.0013 22.0 2.7 23 336-358 2-26 (53)
20 1gh8_A Translation elongation 29.8 1.6E+02 0.0056 22.0 6.6 51 269-323 30-82 (89)
21 3eml_A Human adenosine A2A rec 26.7 3E+02 0.01 25.6 9.8 56 113-177 29-86 (488)
22 2zxe_G FXYD10, phospholemman-l 26.7 70 0.0024 23.2 3.8 31 63-94 9-39 (74)
23 2jvf_A De novo protein M7; tet 26.0 94 0.0032 22.4 4.3 45 278-325 10-54 (96)
24 2nyi_A Unknown protein; protei 22.6 1.7E+02 0.0059 24.6 6.4 50 274-325 120-174 (195)
25 2jp3_A FXYD domain-containing 22.5 1.2E+02 0.0042 21.5 4.3 32 63-95 7-38 (67)
26 2b5b_A Defensin; antibiotic; N 21.5 71 0.0024 19.1 2.4 24 338-361 5-33 (36)
27 1rju_V Metallothionein; Cu(I)- 21.4 51 0.0017 19.7 1.8 17 341-357 3-21 (36)
28 3mgj_A Uncharacterized protein 20.4 2.9E+02 0.0099 21.8 6.6 65 269-333 28-93 (118)
29 4fyl_A Ribosome hibernation pr 20.3 2.7E+02 0.0091 20.6 6.8 46 268-315 30-87 (95)
30 3tqm_A Ribosome-associated fac 20.3 2.6E+02 0.0091 20.5 6.4 46 268-315 30-87 (96)
31 2jvf_A De novo protein M7; tet 20.2 1.8E+02 0.0063 20.9 4.9 39 288-326 48-86 (96)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=8.1e-52 Score=393.57 Aligned_cols=273 Identities=15% Similarity=0.194 Sum_probs=253.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHH
Q psy1590 5 NKCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINTV 83 (365)
Q Consensus 5 ~~r~l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~i 83 (365)
.+|.+++++++|++++++|+++|+++||.||++||+||+.|++++++++++.++++|| |++|||||+|+|+++++++++
T Consensus 2 ~~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~ 81 (283)
T 3h90_A 2 VSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSM 81 (283)
T ss_dssp CCTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHH
Confidence 3788999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCcccccccccCccchhH---HhHHHHHHH
Q psy1590 84 FLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNA---VSITDGLGA 160 (365)
Q Consensus 84 ~ll~~~~~il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~~~~~~~~~~~~~~h~~~~k~~~s~~l~A---~~~~D~l~s 160 (365)
+++++++++++++++++++|++...+.++++++++++++|.+. +++.++.+ |+.+|++++| |+++|+++|
T Consensus 82 ~l~~~~~~i~~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~~-~~~~~~~~------~~~~s~~l~a~~~h~~~D~~~s 154 (283)
T 3h90_A 82 FISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIIL-VSFQRWVV------RRTQSQAVRADMLHYQSDVMMN 154 (283)
T ss_dssp HHHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHH-HHHHHHHH------HHSCCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHH-HHHHHHHH------HHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887777899999999999974 44444444 7788999996 999999999
Q ss_pred HHHHHHHHHHhhcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccccccchhhhh
Q psy1590 161 IMLVLSSICISHFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDIISIHE 240 (365)
Q Consensus 161 i~vlia~i~~~~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~~~~~~~i~~~i~~~~~~~~~~~~~ 240 (365)
+++++++++. ++||+ |+||++++++++++++.+++++|++...|+|++|+++..+++++.+++
T Consensus 155 ~~vli~~~~~--~~g~~----~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~i~~----------- 217 (283)
T 3h90_A 155 GAILLALGLS--WYGWH----RADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS----------- 217 (283)
T ss_dssp SCSCSSSCSC--STTSC----CSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHH--HhCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-----------
Confidence 9999995555 78988 999999999999999999999999999999999998999999999999
Q ss_pred hhccccccccCCccccccccccccccccccceeeeeEEEEEEeeCCEEEEEEEEEECCC---ccHHHHHHHHHHHHh-hc
Q psy1590 241 FLAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHIKFHDK---QKYIELHKKIQCFFH-GL 316 (365)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~---~~~~~i~~~i~~~l~-~~ 316 (365)
.|||.++|++|+|+ .|++..+++|++++++ ++.|++.+++|+.++ ++
T Consensus 218 ----------------------------~~~V~~v~~l~~~~-~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~ 268 (283)
T 3h90_A 218 ----------------------------WPGVSGAHDLRTRQ-SGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRF 268 (283)
T ss_dssp ----------------------------SSSCSEEEEEEEEE-ETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHS
T ss_pred ----------------------------CCCcccceeeEEEE-ECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 89999999999999 5889999999999998 689999999999997 47
Q ss_pred CCceEEEeeeecCC
Q psy1590 317 GVHSVTIQPEFLDL 330 (365)
Q Consensus 317 ~v~~vtI~ve~~~~ 330 (365)
+..++|||+||.+.
T Consensus 269 ~~~~v~ih~ep~~~ 282 (283)
T 3h90_A 269 PGSDVIIHQDPCSV 282 (283)
T ss_dssp TTCEEEEEEECSCC
T ss_pred CCCeEEEEeccCCC
Confidence 77899999999764
No 2
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=2.3e-51 Score=394.60 Aligned_cols=273 Identities=15% Similarity=0.221 Sum_probs=253.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHHH
Q psy1590 6 KCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILGVLINTVF 84 (365)
Q Consensus 6 ~r~l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~-~~~~pyG~~r~E~l~~li~~i~ 84 (365)
|++.++++++|++++++|+++|+++||.||++||+||+.|+++.++++++.++++|| |++|||||+|+|++++++++++
T Consensus 12 r~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~~~ 91 (306)
T 3j1z_P 12 KLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQSAF 91 (306)
T ss_dssp STTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCcccccccccCccchhH---HhHHHHHHHH
Q psy1590 85 LTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNA---VSITDGLGAI 161 (365)
Q Consensus 85 ll~~~~~il~~ai~~l~~~~~~~~~~~~l~i~~vslvv~~~~~~~~~~~~~~h~~~~k~~~s~~l~A---~~~~D~l~si 161 (365)
++++++++++++++++++|++...+.+++++++++++++.. ++++.++.+ ++.+|.+++| |.++|+++|+
T Consensus 92 l~~~~~~i~~eai~~l~~p~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~------~~~~s~~l~a~~~h~~~D~l~s~ 164 (306)
T 3j1z_P 92 IMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLA-LVLLQKRAL------AATNSTVVEADSLHYKSDLFLNA 164 (306)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCGGGTTCCHHHHHHHHHHHHH-HHHHHHHHH------TTSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHhhhheecCCCccccccchhhhhhHhhhhHH-HHHHHHHhc------cccCCHHHHHHHHhhcchhhhhh
Confidence 99999999999999999999888777788899999999986 555555544 7778999986 9999999999
Q ss_pred HHHHHHHHHhhcCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccccccchhhhhh
Q psy1590 162 MLVLSSICISHFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDIISIHEF 241 (365)
Q Consensus 162 ~vlia~i~~~~~~g~~~~~~~iDpv~siiIa~~ii~~~~~llk~s~~~Ll~~~p~~~~~~~i~~~i~~~~~~~~~~~~~~ 241 (365)
++++++++. ++||+ |+||++++++++++++.+++++|++...|+|++|++++.++|++.+++
T Consensus 165 ~vli~~~~~--~~g~~----~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~~------------ 226 (306)
T 3j1z_P 165 AVLLALVLS--QYGWW----WADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKE------------ 226 (306)
T ss_dssp TCCCTTSSC--CSSSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHH--HhCcc----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhc------------
Confidence 999996666 77888 999999999999999999999999999999999999999999999998
Q ss_pred hccccccccCCccccccccccccccccccceeeeeEEEEEEeeCCEEEEEEEEEECCC---ccHHHHHHHHHHHHhh-cC
Q psy1590 242 LAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHIKFHDK---QKYIELHKKIQCFFHG-LG 317 (365)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~---~~~~~i~~~i~~~l~~-~~ 317 (365)
.|||.++|++|+|+ .|+++++++|+++|++ .++|++.+++|+.+++ ++
T Consensus 227 ---------------------------~~~V~~vh~l~~~~-~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~ 278 (306)
T 3j1z_P 227 ---------------------------DPRVLGLHDLRTRQ-AGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFE 278 (306)
T ss_dssp ---------------------------STTBCCCCCBCCEE-ETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHST
T ss_pred ---------------------------CCCcceeeeEEEEE-ECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999 5999999999999998 7899999999999985 68
Q ss_pred CceEEEeeeecCCC
Q psy1590 318 VHSVTIQPEFLDLN 331 (365)
Q Consensus 318 v~~vtI~ve~~~~~ 331 (365)
+.++|||+||.+.+
T Consensus 279 ~~~v~IhveP~~~e 292 (306)
T 3j1z_P 279 DAEVIIHQDPVQVE 292 (306)
T ss_dssp TCEEEECCEETTSC
T ss_pred CCeEEEEeCCCCCC
Confidence 89999999998755
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.37 E-value=1.7e-12 Score=102.45 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=69.2
Q ss_pred HHhcCCCCCCCHHHHHHHHhccccccchhhhhhhccccccccCCccccccccccccccccc--cceeeeeEEEEEEeeCC
Q psy1590 209 ILIQSTPQHIDVPELKRKLLHKYKDDIISIHEFLAEDKCFDFDSINTATHRCAGIEKETYK--DDIISIHEFHVWQLESN 286 (365)
Q Consensus 209 ~Ll~~~p~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~g~ 286 (365)
.|||++|+++..++|++.+++ . |||.++|++|+|+ .|+
T Consensus 1 ~Lld~~~~~~~~~~I~~~l~~---------------------------------------~~~~gV~~vh~l~~~~-~g~ 40 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQE---------------------------------------RIRGRALEVHDLKTRR-AGP 40 (94)
T ss_dssp -----CCCHHHHHHHHHHHHH---------------------------------------HHTTTCSEEEEEEEEE-ETT
T ss_pred CCcCCCCCHHHHHHHHHHHHh---------------------------------------cCCCCceeeeeEEEEE-ECC
Confidence 489999998999999999998 8 9999999999999 588
Q ss_pred EEEEEEEEEECCC---ccHHHHHHHHHHHHhh-cCCceEEEeeeecCCC
Q psy1590 287 RIIATLHIKFHDK---QKYIELHKKIQCFFHG-LGVHSVTIQPEFLDLN 331 (365)
Q Consensus 287 ~~~v~i~i~v~~~---~~~~~i~~~i~~~l~~-~~v~~vtI~ve~~~~~ 331 (365)
.+++++||.++++ .+++++.+++++.|++ +++.++|||+||..+.
T Consensus 41 ~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~~vtIh~ep~~~~ 89 (94)
T 3byp_A 41 RSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQATIHVEPEGER 89 (94)
T ss_dssp EEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEEEEEEEECC--
T ss_pred cEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCCEEEEEeCCCCcc
Confidence 8999999999987 5789999999999974 7777999999996443
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.22 E-value=1.9e-11 Score=98.91 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=68.6
Q ss_pred hcCCCCCC--CHHHHHHHHhccccccchhhhhhhccccccccCCccccccccccccccccccceeeeeEEEEEEeeCCEE
Q psy1590 211 IQSTPQHI--DVPELKRKLLHKYKDDIISIHEFLAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRI 288 (365)
Q Consensus 211 l~~~p~~~--~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~g~~~ 288 (365)
||++|+++ ..++|++.+++ .|||.++|++|+|+ .|+.+
T Consensus 1 md~~~~~~~~~~~~I~~~l~~---------------------------------------~~gV~~vh~lr~r~-~G~~~ 40 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVLER---------------------------------------FPNVHNPHRVRIRR-VGTKY 40 (107)
T ss_dssp ---CCHHHHHHHHHHHHHHTT---------------------------------------CSSCEEEEEEEEEC-SCC-C
T ss_pred CCCCCCccHHHHHHHHHHHHc---------------------------------------CCCccccEEEEEEE-ECCcE
Confidence 57788878 88999999988 99999999999998 68999
Q ss_pred EEEEEEEECCC---ccHHHHHHHHHHHHhh-cC-CceEEEeeeecCC
Q psy1590 289 IATLHIKFHDK---QKYIELHKKIQCFFHG-LG-VHSVTIQPEFLDL 330 (365)
Q Consensus 289 ~v~i~i~v~~~---~~~~~i~~~i~~~l~~-~~-v~~vtI~ve~~~~ 330 (365)
++++||.++++ .+++++.+++++.|++ ++ +.++|||+||.+.
T Consensus 41 ~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtIhvEp~~~ 87 (107)
T 2zzt_A 41 FIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPLGN 87 (107)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTC
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEEecCCC
Confidence 99999999987 6789999999999975 77 8999999999653
No 5
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=97.03 E-value=0.00027 Score=67.01 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q psy1590 10 LFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGLC 89 (365)
Q Consensus 10 ~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~~~~~pyG~~r~E~l~~li~~i~ll~~~ 89 (365)
.++++.+..+..+..-.+-..+|.++.+|+.|...|+++++..+++...+. ||+..++++++++.+++++..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~-------~g~~~~Dpi~ai~Ia~~I~~~~ 196 (306)
T 3j1z_P 124 VVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ-------YGWWWADGLFAVLIACYIGQQA 196 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC-------SSSCCCHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH-------hCcchhhhHHHHHHHHHHHHHH
Confidence 345566666666666667778999999999999999999988888765543 7888999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCC
Q psy1590 90 FLMVIHGVKRILEPSPV 106 (365)
Q Consensus 90 ~~il~~ai~~l~~~~~~ 106 (365)
+.++++++..+++..+.
T Consensus 197 ~~l~~~s~~~Ll~~~~~ 213 (306)
T 3j1z_P 197 FDLGYRSIQALLDRELD 213 (306)
T ss_dssp HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCcccc
Confidence 99999999999986543
No 6
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=97.02 E-value=0.00024 Score=66.46 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHH
Q psy1590 9 LLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGL 88 (365)
Q Consensus 9 l~i~l~~nl~l~v~kl~~g~~s~S~ALlaDalhsl~D~~s~~~~l~~l~~s~r~~~~~pyG~~r~E~l~~li~~i~ll~~ 88 (365)
..+++++|..++....-.+-..+|.++.+|+.|...|+++++..+++...+ .+|+..++++++++.+++++..
T Consensus 114 ~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~-------~~g~~~~D~i~~i~ia~~i~~~ 186 (283)
T 3h90_A 114 TIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS-------WYGWHRADALFALGIGIYILYS 186 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC-------STTSCCSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCchHHHHHHHHHHHHHHHHH
Confidence 355777788887777777778899999999999999999998877765432 2588889999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCC
Q psy1590 89 CFLMVIHGVKRILEPSPV 106 (365)
Q Consensus 89 ~~~il~~ai~~l~~~~~~ 106 (365)
++.++++++..+++..+.
T Consensus 187 ~~~l~~~s~~~Ll~~~~~ 204 (283)
T 3h90_A 187 ALRMGYEAVQSLLDRALP 204 (283)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 999999999999986543
No 7
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=83.41 E-value=2.8 Score=32.49 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=36.1
Q ss_pred eeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEEeeeec
Q psy1590 275 IHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTIQPEFL 328 (365)
Q Consensus 275 v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI~ve~~ 328 (365)
|+++.+ .++++.+++.+..+.-.-...+.+++++.+++. |+..|.|++...
T Consensus 33 V~~v~v---~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~~~ 84 (103)
T 3cq1_A 33 IYDLVV---EPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFE 84 (103)
T ss_dssp EEEEEE---ETTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEECCS
T ss_pred eEEEEE---ECCEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEecC
Confidence 445554 466666666665555567888999999999985 899888876543
No 8
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=79.07 E-value=4.3 Score=31.37 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=36.8
Q ss_pred eeEEEEEEeeC-CEEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEEeeee
Q psy1590 275 IHEFHVWQLES-NRIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTIQPEF 327 (365)
Q Consensus 275 v~~~~~~~~~g-~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI~ve~ 327 (365)
|+++.+ .+ +++.+++.+..+.-.....+.+++++.+++. |+..|.|++..
T Consensus 33 V~~v~v---~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~~ 84 (103)
T 1uwd_A 33 VYDIQI---DDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELTF 84 (103)
T ss_dssp CCCEEE---CTTCEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEECC
T ss_pred eeEEEE---cCCCEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEec
Confidence 345554 43 6777777666665577899999999999986 89988877653
No 9
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=77.31 E-value=15 Score=28.12 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=37.8
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEEeeeecCCCCCcC
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTIQPEFLDLNSSAN 335 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI~ve~~~~~~~~~ 335 (365)
+||+ ++ +.-....+++++.+.- .+..++.+.+ +.++++ ||.++.......+......
T Consensus 29 ipgv-Ei---~~~~~~~GkiVV~iEa-----~~~~~l~~~i-~~I~~i~GVlst~lvy~~~e~~~~~~ 86 (95)
T 2jsx_A 29 FPGC-EV---AVSDAPSGQLIVVVEA-----EDSETLIQTI-ESVRNVEGVLAVSLVYHQQEEQGEET 86 (95)
T ss_dssp STTE-EE---EEEETTTTEEEEEEEE-----SSHHHHHHHH-HHHTTSTTEEEEEESSCCCCCCCCSS
T ss_pred CCCe-EE---EEecCCCCCEEEEEEe-----CCHHHHHHHH-HHHhcCCCccEEeEEEEEeccccccc
Confidence 9998 44 4433124577766533 5677788877 788886 9999888877766554433
No 10
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=75.21 E-value=5.6 Score=31.06 Aligned_cols=52 Identities=6% Similarity=0.127 Sum_probs=38.6
Q ss_pred eeEEEEEEeeC-CEEEEEEEEEECCCccHHHHHHHHHHHH-hhc-CCceEEEeeeecC
Q psy1590 275 IHEFHVWQLES-NRIIATLHIKFHDKQKYIELHKKIQCFF-HGL-GVHSVTIQPEFLD 329 (365)
Q Consensus 275 v~~~~~~~~~g-~~~~v~i~i~v~~~~~~~~i~~~i~~~l-~~~-~v~~vtI~ve~~~ 329 (365)
|+++.+ .+ +.+.+++.+..+.-.....+.+.+++.+ ++. |+..|.|++....
T Consensus 35 V~~I~v---~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~~~p 89 (108)
T 3lno_A 35 VYDVTA---DENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVVWNP 89 (108)
T ss_dssp EEEEEE---CTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEECCSS
T ss_pred ceEEEE---CCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEEecC
Confidence 344444 44 6777777777766677889999999999 675 8998888877543
No 11
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=50.55 E-value=68 Score=23.11 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=36.3
Q ss_pred eeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhcCCceEEEeee
Q psy1590 274 SIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGLGVHSVTIQPE 326 (365)
Q Consensus 274 ~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~~v~~vtI~ve 326 (365)
.|.++.... .++...+.+.+++++..+..++.+++++.-+++++. +.++++
T Consensus 32 NI~~i~~~~-~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~~~-~~~~~~ 82 (91)
T 1zpv_A 32 NIDDISQTV-LDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNVK-INIQSA 82 (91)
T ss_dssp EEEEEEEEE-ETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHTEE-EEEEEG
T ss_pred CEEEEEeEE-EcCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcCCE-EEEeeH
Confidence 667777666 357888888898887678888888888766666643 444433
No 12
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=40.21 E-value=1.7e+02 Score=26.47 Aligned_cols=53 Identities=4% Similarity=0.147 Sum_probs=34.5
Q ss_pred EEEEEeeCCEEEEEEEEEECCC---ccHHHHHHHHHHHHhhcCCc----eEEEeeeecCC
Q psy1590 278 FHVWQLESNRIIATLHIKFHDK---QKYIELHKKIQCFFHGLGVH----SVTIQPEFLDL 330 (365)
Q Consensus 278 ~~~~~~~g~~~~v~i~i~v~~~---~~~~~i~~~i~~~l~~~~v~----~vtI~ve~~~~ 330 (365)
+.+...+++.+...+...+++. .-..++..++.+.|++.|++ +-+||++..++
T Consensus 222 v~~~~~~~s~i~~~v~~~~~~~~~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~~~e 281 (285)
T 3udc_A 222 LGITDMQDSKLVIMVYAKTQPMQKWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKRVKE 281 (285)
T ss_dssp EEEEEEETTEEEEEEEEEESTTCHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEEC--
T ss_pred ccccccCCCEEEEEEEEEECcchHHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCcCCC
Confidence 4455667888888888777766 23566788888888875543 34677765443
No 13
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=39.57 E-value=96 Score=28.15 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=33.1
Q ss_pred EEEEEEeeCCEEEEEEEEEECCC---ccHHHHHHHHHHHHhhcCCc----eEEEeeeec
Q psy1590 277 EFHVWQLESNRIIATLHIKFHDK---QKYIELHKKIQCFFHGLGVH----SVTIQPEFL 328 (365)
Q Consensus 277 ~~~~~~~~g~~~~v~i~i~v~~~---~~~~~i~~~i~~~l~~~~v~----~vtI~ve~~ 328 (365)
.+.+...+++.+...+..-+++. .-..++.+++.+.|++.|++ .-++|++..
T Consensus 222 ~v~v~~~~~~~i~~~v~~~~~~~~~~~~~~~l~~~i~~~~~~~gI~ip~P~~~v~~~~~ 280 (286)
T 2vv5_A 222 TVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRV 280 (286)
T ss_dssp EEEEEEECSSSEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTCCCCCCEEEEEEECC
T ss_pred EEEEEEecCCeEEEEEEEEEccchHHHHHHHHHHHHHHHHHHCCCcCCCCceEEEeccC
Confidence 45555666777777777777665 33556777777788765543 456666543
No 14
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=39.27 E-value=1e+02 Score=21.94 Aligned_cols=49 Identities=6% Similarity=0.085 Sum_probs=28.1
Q ss_pred ccceeeeeEEEEEEeeCC-EEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEEeeee
Q psy1590 269 KDDIISIHEFHVWQLESN-RIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTIQPEF 327 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~-~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI~ve~ 327 (365)
.|+|.+++ .++|+ .+.+ .+.++ +..++.+-+.+.+.+. ||.++.-.+--
T Consensus 25 ~peV~e~~-----~vtG~~D~ll--~v~~~---d~~~l~~~i~~~l~~~~gV~~~~T~ivl 75 (83)
T 2cvi_A 25 MPEVKEAY-----VVYGEYDLIV--KVETD---TLKDLDQFITEKIRKMPEIQMTSTMIAI 75 (83)
T ss_dssp STTEEEEE-----ECBSSCSEEE--EEEES---SHHHHHHHHHTTGGGCTTEEEEEEEEEE
T ss_pred CCCeeEEE-----EEcccCCEEE--EEEEC---CHHHHHHHHHHHhccCCCEeEEEEEEEE
Confidence 89997664 33343 3554 44443 4455555555566765 78776655543
No 15
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=38.12 E-value=1.3e+02 Score=22.71 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=35.3
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEECCC-c-cHHHHHHHHHHHHhhc-CCceEEE
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDK-Q-KYIELHKKIQCFFHGL-GVHSVTI 323 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~-~-~~~~i~~~i~~~l~~~-~v~~vtI 323 (365)
.++-...+..+.--+..+-..+.+.+.++++ . ..+++.+++ +++ +|.++.|
T Consensus 32 ~~~gl~w~~~k~~pIafGlk~L~i~~vveD~~~~~tD~lee~i----~~~e~VqSvdV 85 (91)
T 2yy3_A 32 IPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSFDEVAEKF----EEVENVESAEV 85 (91)
T ss_dssp SCTTCEEEEEEEEECTTSCEEEEEEEEECSSTTCCHHHHHHHH----HHSTTEEEEEE
T ss_pred ccCCcEEeeeeEEEEEcceeeEEEEEEEECCCccccHHHHHHH----hcCCCceEEEE
Confidence 4544577777777777888889999999887 3 566666655 443 6776654
No 16
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=37.70 E-value=99 Score=23.25 Aligned_cols=56 Identities=16% Similarity=0.046 Sum_probs=34.2
Q ss_pred eeeEEEEEEeeCCEEEEEEEEEECCC------ccHHHHHHHHHHHHhhcCCceEEEeeeecCCC
Q psy1590 274 SIHEFHVWQLESNRIIATLHIKFHDK------QKYIELHKKIQCFFHGLGVHSVTIQPEFLDLN 331 (365)
Q Consensus 274 ~v~~~~~~~~~g~~~~v~i~i~v~~~------~~~~~i~~~i~~~l~~~~v~~vtI~ve~~~~~ 331 (365)
.+..+.+++ ..+...+++|..-|+- .+.+++.+.+++.+... -..+.|.++....+
T Consensus 24 Gis~IeIeR-~~~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~-~~~v~I~I~eV~~P 85 (92)
T 1wh9_A 24 GYSGVEVRV-TPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFP-EGSVELYAEKVATR 85 (92)
T ss_dssp TEEEEEEEE-CSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCC-TTSEEEEEEECCCS
T ss_pred ceeeEEEEE-CCCeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCC-CCeEEEEEEEecCC
Confidence 457788888 6888998888866533 33455555555444211 23477777765544
No 17
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=34.08 E-value=1.1e+02 Score=21.42 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=26.5
Q ss_pred ccceeeeeEEEEEEeeCC-EEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEEeee
Q psy1590 269 KDDIISIHEFHVWQLESN-RIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTIQPE 326 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~-~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI~ve 326 (365)
.|+|.+++ .++|+ .+. +++.+++ .+++.+-+.+.+.+. ||.++.-.+-
T Consensus 25 ~peV~~~~-----~vtG~~d~l--~~v~~~d---~~~l~~~~~~~l~~~~gV~~~~t~iv 74 (83)
T 2zbc_A 25 MSEVTEVH-----VVYGVYDIV--VKVEADS---MDKLKDFVTNTIRKLPKVRSTLTMII 74 (83)
T ss_dssp CTTEEEEE-----ECSSSCSEE--EEEECSS---HHHHHHHHHHTGGGSTTEEEEEEEEC
T ss_pred CCCeEEEE-----EEeccCCEE--EEEEECC---HHHHHHHHHHHhcCCCCEeEEEEEEE
Confidence 89886664 33343 344 4444443 445544455566665 7776655543
No 18
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=32.25 E-value=1.6e+02 Score=21.96 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=33.2
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEECCC-----ccHHHHHHHHHHHHhh-cCCc
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDK-----QKYIELHKKIQCFFHG-LGVH 319 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~-----~~~~~i~~~i~~~l~~-~~v~ 319 (365)
.|+|.+..-+-+.. .+..-...+.++..+. .+..++.+++++.+++ +|+.
T Consensus 26 ~p~v~~~~vv~v~~-~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~ 81 (109)
T 3lax_A 26 FKELGSDYLITLET-AESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVT 81 (109)
T ss_dssp CTTEEEEEEEEEEE-ETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCcccceEEEEec-cccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCc
Confidence 89988776666655 4555555666666554 3456778888888875 5765
No 19
>1aqs_A Cu-MT, Cu-metallothionein; copper detoxification, metal-thiolate cluster; NMR {Saccharomyces cerevisiae} SCOP: g.46.1.1
Probab=31.69 E-value=37 Score=22.01 Aligned_cols=23 Identities=39% Similarity=0.783 Sum_probs=14.2
Q ss_pred cccCccccccccC--CCCccCCCCC
Q psy1590 336 NRQSHCEIQCPQN--GMLCQKSTCC 358 (365)
Q Consensus 336 ~~~~~~~~~~~~~--~~~~~~~~~~ 358 (365)
|+.-+|+-||+.+ ...||++--|
T Consensus 2 neghecqcqcgscknneqcqkscsc 26 (53)
T 1aqs_A 2 NEGHECQCQCGSCKNNEQCQKSCSC 26 (53)
T ss_dssp CSCCCCCCCSSSSSSCTTSTTSCSC
T ss_pred CCCceeeeecCCccChHHHhhcCCC
Confidence 4556677777765 4567765433
No 20
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=29.82 E-value=1.6e+02 Score=21.99 Aligned_cols=51 Identities=10% Similarity=0.137 Sum_probs=32.4
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEECCC-ccHHHHHHHHHHHHhhc-CCceEEE
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDK-QKYIELHKKIQCFFHGL-GVHSVTI 323 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~-~~~~~i~~~i~~~l~~~-~v~~vtI 323 (365)
.++-......+.--+..+-..+.+.+.++++ ...+++ ++.++++ +|.++.|
T Consensus 30 ~~~gl~w~~~k~~piafGlk~L~i~~vveD~~~~td~l----ee~i~~~e~Vqsvdv 82 (89)
T 1gh8_A 30 IPEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAA----EESLSGIEGVSNIEV 82 (89)
T ss_dssp SCTTSEECCCCEEECSSSCEEEEEEEEESSSCGGGGHH----HHHHTTSCSSEEEEE
T ss_pred ccCCcEEeeeeEEEEEcceeeEEEEEEEEcCCcChHHH----HHHHhccCCccEEEE
Confidence 4433455555555667778888899999776 444444 4445654 6776655
No 21
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=26.74 E-value=3e+02 Score=25.56 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcccccccccCccchh-H-HhHHHHHHHHHHHHHHHHHhhcCCCc
Q psy1590 113 LLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVN-A-VSITDGLGAIMLVLSSICISHFDDNQ 177 (365)
Q Consensus 113 l~i~~vslvv~~~~~~~~~~~~~~h~~~~k~~~s~~l~-A-~~~~D~l~si~vlia~i~~~~~~g~~ 177 (365)
+++.+++++.|++.++.+.++.. .+ +..++. . -..+|.+..+..+.-.+.. ..+|.
T Consensus 29 ~~i~~~gi~gN~lvi~~~~~~~~------~~-~~~~~~l~~La~aDll~~~~~~p~~~~~--~~~~~ 86 (488)
T 3eml_A 29 LAIAVLAILGNVLVCWAVWLNSN------LQ-NVTNYFVVSLAAADIAVGVLAIPFAITI--STGFC 86 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGG------GC-SSHHHHHHHHHHHHHHHHHTHHHHHHHH--TTCCE
T ss_pred HHHHHHHHHHHHHhhhheeeccc------cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccc
Confidence 46678889999987766655431 12 222222 3 7788888766544443333 44554
No 22
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=26.69 E-value=70 Score=23.19 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=21.5
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1590 63 SIRNTYGWARVEILGVLINTVFLTGLCFLMVI 94 (365)
Q Consensus 63 ~~~~pyG~~r~E~l~~li~~i~ll~~~~~il~ 94 (365)
+..|.|-|..+.. ++|+.+.+|+++++.++.
T Consensus 9 ~dpF~YDY~tLRi-gGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 9 DERFTYDYYRLRV-VGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp GGGGCCCHHHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred CCCcccchHHhee-ccchhHHHHHHHHHHHHH
Confidence 6778888887765 666666677777766554
No 23
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=26.04 E-value=94 Score=22.41 Aligned_cols=45 Identities=9% Similarity=0.201 Sum_probs=23.5
Q ss_pred EEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhcCCceEEEee
Q psy1590 278 FHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGLGVHSVTIQP 325 (365)
Q Consensus 278 ~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~~v~~vtI~v 325 (365)
+++.+ .|.. +++.|.+..+.+...-.+++++.+..-|.+.|.|.+
T Consensus 10 ikiqr-dgqe--ieidirvstgkeleralqelekalaragarnvqiti 54 (96)
T 2jvf_A 10 IKIQR-DGQE--IEIDIRVSTGKELERALQELEKALARAGARNVQITI 54 (96)
T ss_dssp EEEEE-TTEE--EEEEEECCSSSHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred EEEee-CCeE--EEEEEEEcccHHHHHHHHHHHHHHHhccccceEEEE
Confidence 34444 3443 445555555555555556666666554555444444
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=22.59 E-value=1.7e+02 Score=24.60 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=33.4
Q ss_pred eeeEEEEEEee-----CCEEEEEEEEEECCCccHHHHHHHHHHHHhhcCCceEEEee
Q psy1590 274 SIHEFHVWQLE-----SNRIIATLHIKFHDKQKYIELHKKIQCFFHGLGVHSVTIQP 325 (365)
Q Consensus 274 ~v~~~~~~~~~-----g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~~v~~vtI~v 325 (365)
.|.+++..... .+.+++.+.+.++++.+ .++.+.+....+++++. +.++.
T Consensus 120 nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~a~~l~~d-i~~~~ 174 (195)
T 2nyi_A 120 NIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRVEEEFGVD-IDLEE 174 (195)
T ss_dssp EEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHHHHHHTCE-EEEEE
T ss_pred CEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHHHHHcCeE-EEEEE
Confidence 66666665532 25788888888775555 77888887777777764 45554
No 25
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.49 E-value=1.2e+02 Score=21.46 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=21.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1590 63 SIRNTYGWARVEILGVLINTVFLTGLCFLMVIH 95 (365)
Q Consensus 63 ~~~~pyG~~r~E~l~~li~~i~ll~~~~~il~~ 95 (365)
+..|.|-|..+.. ++|+.+.+|+++++.++..
T Consensus 7 ~dpF~YDY~tLRi-gGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 7 GSPFYYDWESLQL-GGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp TSGGGGGGHHHHH-HHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccchHHhee-cchhhHHHHHHHHHHHHHc
Confidence 5667777777765 6666666676666665543
No 26
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=21.53 E-value=71 Score=19.07 Aligned_cols=24 Identities=29% Similarity=0.841 Sum_probs=17.2
Q ss_pred cCcccccccc----C-CCCccCCCCCCCC
Q psy1590 338 QSHCEIQCPQ----N-GMLCQKSTCCGPQ 361 (365)
Q Consensus 338 ~~~~~~~~~~----~-~~~~~~~~~~~~~ 361 (365)
+++|.-.|+. + .+.|.+-.||-|-
T Consensus 5 pgrctlkcgkherptlpyncgkyiccvpv 33 (36)
T 2b5b_A 5 PGRCTLKCGKHERPTLPYNCGKYICCVPV 33 (36)
T ss_dssp SSCSSSSCCSSCCSSCSSSBCCSSCSSSC
T ss_pred CcceeEeccCcCCCCcCccCCceEEeEEE
Confidence 4566556642 2 7899999999885
No 27
>1rju_V Metallothionein; Cu(I)-thiolate, metal binding protein; 1.44A {Synthetic} SCOP: g.46.1.1 PDB: 1aoo_A 1aqq_A 1aqr_A 1fmy_A
Probab=21.39 E-value=51 Score=19.72 Aligned_cols=17 Identities=41% Similarity=0.767 Sum_probs=9.1
Q ss_pred cccccccC--CCCccCCCC
Q psy1590 341 CEIQCPQN--GMLCQKSTC 357 (365)
Q Consensus 341 ~~~~~~~~--~~~~~~~~~ 357 (365)
|+-||+.+ ...||++--
T Consensus 3 cqcqcgscknneqcqkscs 21 (36)
T 1rju_V 3 CQCQCGSCKNNEQCQKSCS 21 (36)
T ss_dssp CCCCSTTTTTCGGGTTSCC
T ss_pred cccccCCccChHHHhhcCC
Confidence 55556554 445666533
No 28
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=20.35 E-value=2.9e+02 Score=21.82 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=40.2
Q ss_pred ccceeeeeEEEEEEeeCCEEEEEEEEEECCCccHHHHHHHHHHHHhhc-CCceEEEeeeecCCCCC
Q psy1590 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGL-GVHSVTIQPEFLDLNSS 333 (365)
Q Consensus 269 ~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~~~~~~i~~~i~~~l~~~-~v~~vtI~ve~~~~~~~ 333 (365)
..|--+|.++.+-+.-...-.+.+.|.-++.+..++|..++++.=... ...++...+-|.|.-.|
T Consensus 28 ~GG~F~I~~f~vG~~k~d~SyA~l~V~a~d~e~L~~Il~~L~~lGA~~~~~~da~l~~a~~dgV~P 93 (118)
T 3mgj_A 28 MGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEILNELRDLGAEIPEIEEVELQPAEKDMVLP 93 (118)
T ss_dssp TTCEEEEEEEECCSSTTSCEEEEEEEEESSHHHHHHHHHHHHHHHHHCTTEEEEEECCSSSCCBCC
T ss_pred cCCCEEEEEEecCCCCCCcceEEEEEecCCHHHHHHHHHHHHHcCCcCCCCCCceEEEccccCcCC
Confidence 677778888888653344456667776676677777777776553332 45555555544444444
No 29
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=20.31 E-value=2.7e+02 Score=20.59 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=30.9
Q ss_pred cccceeeeeEEEEEEeeCCEEEEEEEEEECCC------------ccHHHHHHHHHHHHhh
Q psy1590 268 YKDDIISIHEFHVWQLESNRIIATLHIKFHDK------------QKYIELHKKIQCFFHG 315 (365)
Q Consensus 268 ~~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~------------~~~~~i~~~i~~~l~~ 315 (365)
|++.+.+++ +.+.. .++...+++.+.+++. +-.+...+++++.|++
T Consensus 30 ~~~~i~~~~-V~l~~-e~~~~~vei~i~~~g~~l~a~~~~~d~y~AiD~a~dklerQlrk 87 (95)
T 4fyl_A 30 FFDHINHVQ-VILRV-EKLRQIAEATLHVNQAEIHAHADDENMYAAIDSLVDKLVRQLNK 87 (95)
T ss_dssp TCCCEEEEE-EEEEE-ETTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEE-EEEEE-ecCcEEEEEEEEeCCcEEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 477777764 44444 6888889999988766 2244556666766664
No 30
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=20.28 E-value=2.6e+02 Score=20.55 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=29.8
Q ss_pred cccceeeeeEEEEEEeeCCEEEEEEEEEECCC--------c----cHHHHHHHHHHHHhh
Q psy1590 268 YKDDIISIHEFHVWQLESNRIIATLHIKFHDK--------Q----KYIELHKKIQCFFHG 315 (365)
Q Consensus 268 ~~~~v~~v~~~~~~~~~g~~~~v~i~i~v~~~--------~----~~~~i~~~i~~~l~~ 315 (365)
+++.+.+++ +.+.. .++...+++.+.+++. . -.+...+++++.|++
T Consensus 30 ~~~~i~~~~-V~l~~-e~~~~~~ei~i~~~g~~l~a~~~~~d~y~Aid~a~dklerqL~k 87 (96)
T 3tqm_A 30 CRDEISNIH-IIFHI-NKLKKIVDANVKLPGSTINAQAESDDMYKTVDLLMHKLETQLSK 87 (96)
T ss_dssp SGGGCCEEE-EEEEE-ETTEEEEEEEEEETTEEEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEE-EEEEE-eCCceEEEEEEEeCCcEEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 467766553 44444 5778889999988865 1 244556667777765
No 31
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=20.23 E-value=1.8e+02 Score=20.87 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=30.2
Q ss_pred EEEEEEEEECCCccHHHHHHHHHHHHhhcCCceEEEeee
Q psy1590 288 IIATLHIKFHDKQKYIELHKKIQCFFHGLGVHSVTIQPE 326 (365)
Q Consensus 288 ~~v~i~i~v~~~~~~~~i~~~i~~~l~~~~v~~vtI~ve 326 (365)
..+.++|....++++.++.+-|.+.++++|-.++.+.+.
T Consensus 48 rnvqitisaendeqakelleliarllqklgykdinvrvn 86 (96)
T 2jvf_A 48 RNVQITISAENDEQAKELLELIARLLQKLGYKDINVRVN 86 (96)
T ss_dssp SEEEEEEECSSHHHHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred cceEEEEEecChHHHHHHHHHHHHHHHHhCCCceEEEEc
Confidence 456666766666888999999999999888777777665
Done!