RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1590
(365 letters)
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion
transport and metabolism].
Length = 296
Score = 159 bits (404), Expect = 2e-46
Identities = 76/326 (23%), Positives = 152/326 (46%), Gaps = 53/326 (16%)
Query: 4 TNKCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKK-K 62
N+ +LL + ++ +IEI G S+AL+AD+ M S+ +AL +A +++ ++++
Sbjct: 19 RNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPA 78
Query: 63 SIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFII 122
+ R T+G+ R+EIL +N + L + L++ ++R+L P P+ +L++ IIG ++
Sbjct: 79 TKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPPI-HYSGMLVVAIIGLVV 137
Query: 123 NIIGLMLFRDSTTKHCDCFTSRLSVLVNAVSITDGLGAIMLVLSSICISHFDDNQFVQLY 182
N++ +L ++ + + L VL D LG++ +++++I I +
Sbjct: 138 NLVSALLLHKGHEENLNMRGAYLHVL------GDALGSVGVIIAAIVIRFTG-----WSW 186
Query: 183 IDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDIISIHEFL 242
+DP+ I++++L L PLLK S IL++ P+ ID+ +++ ++ I
Sbjct: 187 LDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVRE--------ALLRI---- 234
Query: 243 AEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHIKF-HDKQK 301
+ S+H+ HVW + TLH+
Sbjct: 235 ---------------------------PGVASVHDLHVWSITGGEHALTLHVVVDEVADA 267
Query: 302 YIELHKKIQCFFHGLGVHSVTIQPEF 327
L + ++ G+ VTIQ E
Sbjct: 268 DAALDQIVRRLLEKYGIEHVTIQLET 293
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter.
This model describes a broadly distributed family of
transporters, a number of which have been shown to
transport divalent cations of cobalt, cadmium and/or
zinc. The family has six predicted transmembrane
domains. Members of the family are variable in length
because of variably sized inserts, often containing
low-complexity sequence [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 268
Score = 135 bits (343), Expect = 1e-37
Identities = 72/317 (22%), Positives = 140/317 (44%), Gaps = 65/317 (20%)
Query: 21 IIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMS-KKKSIRNTYGWARVEILGVL 79
+I+I G S+AL+AD+ S+V A A+A L++ +S + R+ +G R EIL L
Sbjct: 4 LIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAAL 63
Query: 80 INTVFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKHCD 139
+N +FL + ++ ++R++ P P + T+L++ I+G I+N+I + +
Sbjct: 64 LNGLFLVVVALFILYEAIERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHRVGHRL-- 121
Query: 140 CFTSRLSVLVNAV-SITDGLGAIMLVLSSICISHFDDNQFVQLYIDPLACIILSILTLYI 198
L++ A+ ++D L ++ +++ ++ I F + DP+A +++S+L LY
Sbjct: 122 ---GSLALRAAALHVLSDALSSVGVLIGALLI------YFGWHWADPIAALLISLLILYT 172
Query: 199 VNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDIISIHEFLAEDKCFDFDSINTATH 258
LLK S +L+ + P D+ E+K+ +L
Sbjct: 173 AFRLLKESINVLLDAAPDEEDLEEIKKAIL------------------------------ 202
Query: 259 RCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHIKF---------HDKQKYIELHKKI 309
+ +H+ H+W++ ++ +H+ HD IE
Sbjct: 203 ---------SIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILK 253
Query: 310 QCFFHGLGVHSVTIQPE 326
+ G+ VTIQ E
Sbjct: 254 RHP----GIEHVTIQVE 266
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 120 bits (302), Expect = 1e-31
Identities = 51/223 (22%), Positives = 114/223 (51%), Gaps = 11/223 (4%)
Query: 19 YFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK-SIRNTYGWARVEILG 77
++++ G S+AL+AD+ ++++ +A L++ +S + R+ +G R+E L
Sbjct: 2 LALVKLAAGLLTGSLALLADALHSLIDLLSSLLALLALRLSSRPPDKRHPFGHGRLEPLA 61
Query: 78 VLINTVFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKH 137
LI ++ L G+ ++ ++R++ P + EP ILL+ +I ++N++ + R + K
Sbjct: 62 ALIVSLLLLGVGVFILYESIERLISPEEI-EPGGILLVALISLVVNLLLALYLRRAGRKI 120
Query: 138 CDCFTSRLSVLVNAVSITDGLGAIMLVLSSICISHFDDNQFVQLYIDPLACIILSILTLY 197
++ + ++A+ D LG++ +++ + I DPLA +++++L LY
Sbjct: 121 GKKSSALRADALHALV--DVLGSLAVLIGLLLILLTGLP-----IADPLASLLIALLILY 173
Query: 198 IVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDIISIHE 240
LLK S L+ ++P V E++ L ++ +H+
Sbjct: 174 TGLRLLKESLSELLGASPDPELVDEIRDALEK--LPGVLGVHD 214
>gnl|CDD|235130 PRK03557, PRK03557, zinc transporter ZitB; Provisional.
Length = 312
Score = 99.8 bits (249), Expect = 8e-24
Identities = 85/354 (24%), Positives = 154/354 (43%), Gaps = 70/354 (19%)
Query: 4 TNKCKLLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKK- 62
N +LL+ F T + ++E+ G+ S+AL+AD+ M ++ AL A L+V S++
Sbjct: 16 NNARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPP 75
Query: 63 SIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFII 122
+IR+T+GW R+ L +N + L + L+V ++R P PV ++ I + G +
Sbjct: 76 TIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRTPRPV-AGGMMMAIAVAGLLA 134
Query: 123 NIIGL-MLFRDSTTKHCDCFTSRLSVLVNAVSITDGLGAIMLVLSSICISHFDDNQFVQL 181
NI+ +L S K+ + + L VL D LG++ +++++ I +
Sbjct: 135 NILSFWLLHHGSEEKNLNVRAAALHVL------GDLLGSVGAIIAALII----------I 178
Query: 182 Y-----IDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDII 236
+ DP+ I++S+L L LLK S L++ P +D+ ELKR+L
Sbjct: 179 WTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRL--------- 229
Query: 237 SIHEFLAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHIKF 296
C I ++ ++H HVW + ++ TLH++
Sbjct: 230 -----------------------CREIP------EVRNVHHVHVWMVGEKPVM-TLHVQV 259
Query: 297 HDKQKYIELHKKIQCFF-HGLGVHSVTIQPEFLDLNSSANNRQSHCEIQCPQNG 349
+ L +IQ + H + TIQ E+ + C + +G
Sbjct: 260 IPPHDHDALLDRIQDYLMHHYQIEHATIQMEYQPCHG------PDCHLNQGVSG 307
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 69.2 bits (170), Expect = 3e-13
Identities = 54/249 (21%), Positives = 102/249 (40%), Gaps = 42/249 (16%)
Query: 12 MFVGTFSYF---IIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKKSIRN-T 67
+ ++++ G SVAL+AD+ S++VA + + + +S K R+
Sbjct: 15 ALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHP 74
Query: 68 YGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINII-- 125
YG + E L LI ++ + F +++ +KR++ P PV+ P L + +I +I
Sbjct: 75 YGHGKAETLASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALY 134
Query: 126 -----------GLMLFRDSTTKHCDCFTSRLSVLVNAVSITDGLGAIMLVLSSICISHFD 174
L D+ D TS L+VLV GL +L +
Sbjct: 135 RYLRRVGKKTNSQALIADALHHRSDVLTS-LAVLV-------GLLGSLL--------GW- 177
Query: 175 DNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDD 234
++DPLA +++S+ L L K S L+ + D+ +++ +L
Sbjct: 178 ------PWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILS--VPG 229
Query: 235 IISIHEFLA 243
+ +H+
Sbjct: 230 VKGVHDLRT 238
Score = 31.8 bits (73), Expect = 0.44
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 9 LLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNTY 68
L V + + G K NS ALIAD+ S+V+ + ++ S
Sbjct: 123 ALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSL-------L 175
Query: 69 GWARVE-ILGVLI 80
GW ++ + +LI
Sbjct: 176 GWPWLDPLAALLI 188
>gnl|CDD|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion
transport and metabolism].
Length = 443
Score = 37.3 bits (87), Expect = 0.010
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 20 FIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNTYGWARVEILGVL 79
F IE+ YG L AL+ ++ + VVAL VA L I T + ++L L
Sbjct: 183 FAIEVLYGRFLEYRALVP---VLVAAVVALLVAGLFGGPHFLLPIVTTPHMSLWDLLLYL 239
Query: 80 INTVF--LTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLF 130
+ + L G+ ++ +R + P LL +G ++ +LF
Sbjct: 240 VLGIIAGLFGVLLSRLLALSRRFFR----RLPLPPLLRPALGGLLVGALGLLF 288
>gnl|CDD|217498 pfam03334, PhaG_MnhG_YufB, Na+/H+ antiporter subunit. This family
includes PhaG from Rhizobium meliloti, MnhG from
Staphylococcus aureus, YufB from Bacillus subtilis.
Length = 81
Score = 33.6 bits (78), Expect = 0.017
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 21/90 (23%)
Query: 112 ILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNAVSITDGLGAIMLVLSSICIS 171
+LL+G ++ IGL+ D F +RL +A + D LG +++L
Sbjct: 1 LLLLGAFFILVGAIGLLRLPD--------FYTRL----HAATKADTLGVGLILLGLALYF 48
Query: 172 HFDDNQFVQLYIDPLACIILSILTLYIVNP 201
PL ++L IL L + P
Sbjct: 49 ---------GDGGPLLKLLLIILFLLLTAP 69
>gnl|CDD|236497 PRK09400, secE, preprotein translocase subunit SecE; Reviewed.
Length = 61
Score = 30.6 bits (70), Expect = 0.15
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 112 ILLIGIIGFIINIIGLMLF 130
ILLIG+IGFII +I +L
Sbjct: 43 ILLIGLIGFIIYLIMTLLP 61
>gnl|CDD|224239 COG1320, MnhG, Multisubunit Na+/H+ antiporter, MnhG subunit
[Inorganic ion transport and metabolism].
Length = 113
Score = 30.8 bits (70), Expect = 0.40
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 23/121 (19%)
Query: 112 ILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNAVSITDGLGAIMLVLSSICIS 171
+LLIG + ++ IGL+ F D T+ ++A + LGA +L+L I
Sbjct: 11 LLLIGALFSLLAAIGLLRFPDVYTR------------LHAATKATTLGAGLLLLGVIIYF 58
Query: 172 HFDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKY 231
F +IL L + + P+ A + ++ VP KR ++ KY
Sbjct: 59 LSLLGFF-------ALKLILLALFILLTAPV---GAHAIARAA-YLSGVPLWKRSVVDKY 107
Query: 232 K 232
K
Sbjct: 108 K 108
>gnl|CDD|225292 COG2443, Sss1, Preprotein translocase subunit Sss1 [Intracellular
trafficking and secretion].
Length = 65
Score = 29.2 bits (66), Expect = 0.53
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 112 ILLIGIIGFIINIIGLMLF 130
ILLIGIIGFII +I + +
Sbjct: 44 ILLIGIIGFIIYLIMIPIN 62
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.
Length = 461
Score = 31.7 bits (73), Expect = 0.61
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 14/58 (24%)
Query: 199 VNPLLKTSALILIQSTPQ-----HIDVPELKRKLLHKYKD--DIISI---HEFLAEDK 246
++PL +S L+ P H D +++L +YK+ D+I+I E AEDK
Sbjct: 336 IDPLASSSNLL----DPLVVGERHYDAAIEVKRILQRYKELEDVIAILGIDELSAEDK 389
>gnl|CDD|217729 pfam03789, ELK, ELK domain. This domain is required for the
nuclear localisation of these proteins. All of these
proteins are members of the Tale/Knox homeodomain
family, a subfamily within homeobox pfam00046.
Length = 22
Score = 27.8 bits (63), Expect = 0.72
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 222 ELKRKLLHKYKDDIISI-HEFL 242
ELK +LL KY + S+ EF
Sbjct: 1 ELKHQLLRKYSGYLGSLKQEFS 22
>gnl|CDD|226474 COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 314
Score = 30.9 bits (70), Expect = 1.1
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 46 VVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVKRILE 102
+++L V+ L I + R YG+ +E L + IN L LC +I+ + +L+
Sbjct: 63 LLSLLVSRL--IAKDPRDARFPYGFWHLEPLVLAINGTLLALLCLYALINALGSLLD 117
>gnl|CDD|183380 PRK11916, PRK11916, electron transfer flavoprotein subunit YdiR;
Provisional.
Length = 312
Score = 30.7 bits (69), Expect = 1.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 126 GLMLFRDSTTKHCDCFTSRLSVLVNAVSITDGLGAIMLVLSSICISH 172
++L + TK +RLSV +NA + D A+ +V IC H
Sbjct: 81 AMLLL--AATKRGKALAARLSVQLNAALVND-ATAVDIVDGHICAEH 124
>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed.
Length = 299
Score = 30.4 bits (69), Expect = 1.3
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 67 TYGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGF-IINII 125
T+G + E L L ++F++G + + G++ ++ P+P+ +P + I + +I +
Sbjct: 72 TFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMNDPG--VGIIVTLVALICTL 129
Query: 126 GLMLF 130
L+ F
Sbjct: 130 ILVTF 134
>gnl|CDD|234485 TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase
A system-associated. Members of this protein family
occur, one to three members per genome, in the same
species of Euryarchaeota as contain the predicted
protein-sorting enzyme archaeosortase (TIGR04125) and
its cognate protein-sorting signal PGF-CTERM
(TIGR04126).
Length = 815
Score = 30.4 bits (69), Expect = 1.8
Identities = 26/143 (18%), Positives = 41/143 (28%), Gaps = 28/143 (19%)
Query: 9 LLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKKSIRNT- 67
L VG F +++ + YL V AVA + V+ K +
Sbjct: 212 LFAGIVGVF--TLVQFILDLFRG----RSPEYLAIVGAVTFAVAAVLVLPFGFKLGFSAT 265
Query: 68 -YGWARVEI-LGVLINTVFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIG------ 119
Y + LGV + V L GL + R P+ + + +G
Sbjct: 266 YYSLFQPLALLGVALGAVLLAGLSRFWERKDLPRYYYPA------AVAGLAALGILVLAL 319
Query: 120 -------FIINIIGLMLFRDSTT 135
I N + T
Sbjct: 320 ALPDLFSLINNGLRFFFGGGGTA 342
>gnl|CDD|148456 pfam06852, DUF1248, Protein of unknown function (DUF1248). This
family represents a conserved region within a number of
proteins of unknown function that seem to be specific to
C. elegans. Note that some family members contain more
than one copy of this region.
Length = 180
Score = 29.3 bits (66), Expect = 2.2
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 18/75 (24%)
Query: 285 SNRIIATLH-IKFHDKQKYIELHKKIQCFFHGLGVHSVTIQPEF-----LDLNSSANNRQ 338
+NR+IAT H I F + K F G G I P++ + L
Sbjct: 55 TNRVIATFHTITFRP----LPSSKDKPFVFLGFG----WIDPDYRGKDIMKLTDD----I 102
Query: 339 SHCEIQCPQNGMLCQ 353
+ E + + + Q
Sbjct: 103 AKEEERRKSDNAVAQ 117
>gnl|CDD|183669 PRK12670, PRK12670, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 99
Score = 28.1 bits (63), Expect = 2.7
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 12/54 (22%)
Query: 112 ILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNAVSITDGLGAIMLVL 165
L +GI +I++IG++ F D T+ ++A ITD LGA ++++
Sbjct: 9 TLGLGIFLIVISVIGVIRFPDFYTR------------LHAAGITDSLGAALILI 50
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 29.6 bits (67), Expect = 2.9
Identities = 27/198 (13%), Positives = 61/198 (30%), Gaps = 37/198 (18%)
Query: 9 LLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVA--LAVACLSV------IMSK 60
+L++ + + Y + L++ N++ L L V +M +
Sbjct: 705 ILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKR 764
Query: 61 KKSIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGF 120
+ R ++ L+ + F++ L+ ++GF
Sbjct: 765 PPRGPEEGLFNRKIFWRFILIIGLLSAILFILT-------------------FLLYLLGF 805
Query: 121 IINIIGLMLFRDSTTKHCDCFTSRLSVLVNAVSITDGLGAIMLVLSSICISHFDDNQFVQ 180
I N +GL LF + + + L + +
Sbjct: 806 IANTLGLDLF----------QALLQTTAFTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKY 855
Query: 181 LYIDPLACIILSILTLYI 198
L++ L IIL +L +++
Sbjct: 856 LWLALLVIIILQLLIIFL 873
>gnl|CDD|112098 pfam03268, DUF267, Caenorhabditis protein of unknown function,
DUF267.
Length = 353
Score = 28.9 bits (65), Expect = 3.9
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 18/77 (23%)
Query: 140 CFTSRLSVLVNAVSITDGLGAIMLVLSSICISHFDDNQFVQLYIDPLACIILSILTLY-- 197
CF + L+N V +T G + + L I L + A II++ +L
Sbjct: 239 CFNA----LINGVYLTSGFFSDVPTLYFII-----------LVFNLAAIIIITFFSLRPA 283
Query: 198 -IVNPLLKTSALILIQS 213
V L ++ IL+
Sbjct: 284 ANVQEQLAHTSRILMND 300
>gnl|CDD|232991 TIGR00473, pssA, CDP-diacylglycerol--serine
O-phosphatidyltransferase. This enzyme,
CDP-diacylglycerol--serine O-phosphatidyltransferase, is
involved in phospholipid biosynthesis catalyzing the
reaction CDP-diacylglycerol + L-serine = CMP +
L-1-phosphatidylserine. Members of this family do not
bear any significant sequence similarity to the
corresponding E.coli protein [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 151
Score = 28.2 bits (63), Expect = 4.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 25 TYGYKLNSVALIADSYLMFSNV 46
Y Y L ++A S LM SN+
Sbjct: 127 LYSYLLAAIAACLLSVLMVSNI 148
>gnl|CDD|237169 PRK12674, PRK12674, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 99
Score = 27.5 bits (62), Expect = 4.4
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 24/101 (23%)
Query: 113 LLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNAVSITDGLGAIMLVLSSICISH 172
LL+G ++ IGL+ D +RL +A + LG +++L+S +
Sbjct: 11 LLLGAFFALVGAIGLVRLPD--------VYTRL----HAATKATTLGLGLVLLASAL--Y 56
Query: 173 FDDNQFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQS 213
F +L IL L++ P +A +L ++
Sbjct: 57 FAG-------GGNSLKALLIILFLFLTAP---VAAHLLARA 87
>gnl|CDD|218678 pfam05656, DUF805, Protein of unknown function (DUF805). This
family consists of several bacterial proteins of unknown
function.
Length = 112
Score = 27.6 bits (62), Expect = 4.9
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 28/105 (26%)
Query: 40 YLMFSNVVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVKR 99
Y F L L ++ + G + + G L+ + + + V+R
Sbjct: 14 YWWFVLFNILITLVLLILAA------LLSGSSSLLSGGGLLLGLISLAIFIPSLAVTVRR 67
Query: 100 ----------ILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDST 134
+L +LLI +IGFI+ ++ +L T
Sbjct: 68 LHDTGRSGWWLL----------LLLIPLIGFIVLLV--LLLLPGT 100
>gnl|CDD|182249 PRK10117, PRK10117, trehalose-6-phosphate synthase; Provisional.
Length = 474
Score = 28.6 bits (64), Expect = 5.7
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 270 DDIISIHEFHVWQLES--------NRIIATLHIKF 296
DDII IH++H+ S NRI LHI F
Sbjct: 124 DDIIWIHDYHLLPFASELRKRGVNNRIGFFLHIPF 158
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 28.5 bits (63), Expect = 6.4
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 316 LGVHSVTIQPEFLDLNSSANNRQSHCEIQCPQNGMLCQKSTCCGPQDF 363
LG V I P ++S NN Q + P + ++ GP F
Sbjct: 599 LGHRRVDICPLISKGSNSPNNNQKYFRRLKPLESGV---ASFIGPISF 643
>gnl|CDD|202341 pfam02671, PAH, Paired amphipathic helix repeat. This family
contains the paired amphipathic helix repeat. The family
contains the yeast SIN3 gene (also known as SDI1) that
is a negative regulator of the yeast HO gene. This
repeat may be distantly related to the helix-loop-helix
motif, which mediate protein-protein interactions.
Length = 47
Score = 25.5 bits (57), Expect = 8.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 226 KLLHKYKDDIISIHEFLAE 244
K+L+ YK I E +A
Sbjct: 9 KILNDYKAGRIDKAELIAR 27
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.142 0.431
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,190,788
Number of extensions: 1788298
Number of successful extensions: 2745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2697
Number of HSP's successfully gapped: 131
Length of query: 365
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 267
Effective length of database: 6,590,910
Effective search space: 1759772970
Effective search space used: 1759772970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (26.8 bits)