RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1590
(365 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 8e-10
Identities = 52/328 (15%), Positives = 101/328 (30%), Gaps = 105/328 (32%)
Query: 38 DSYLMFSNV------VALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLT---GL 88
+ L+ NV A ++C ++ ++ K + + A + + +++ LT
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 89 CFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTT-----KHCDCFTS 143
L+ + L+ P P+ +L ++II + RD KH +C
Sbjct: 305 SLLL------KYLDCRPQDLPREVL--TTNPRRLSIIAESI-RDGLATWDNWKHVNC--- 352
Query: 144 RLSVLVNAVSITDGLGAIMLVLSSICISHFDDNQFVQLYIDPLACIILSILTLYIVNPLL 203
D L I+ ++ + ++ +++ LS+
Sbjct: 353 ------------DKLTTII----ESSLNVLEPAEYRKMFDR------LSVF--------- 381
Query: 204 KTSALILIQSTPQHIDVPELKRKLLHKYKDDIISIHEFLAEDKCFDFDSINTATHRCAGI 263
P +P LL D+I + +K H+ + +
Sbjct: 382 -----------PPSAHIPT---ILLSLIWFDVIKSDVMVVVNKL----------HKYSLV 417
Query: 264 EKETYKDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQC-----------F 312
EK+ K+ ISI ++ LH D Y + K F
Sbjct: 418 EKQ-PKESTISIPSIYLELKVKLENEYALHRSIVD--HY-NIPKTFDSDDLIPPYLDQYF 473
Query: 313 FHGLGVHSVTIQPE---------FLDLN 331
+ +G H I+ FLD
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFR 501
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 56.0 bits (136), Expect = 3e-09
Identities = 38/228 (16%), Positives = 86/228 (37%), Gaps = 25/228 (10%)
Query: 20 FIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKKSIRN-TYGWARVEILGV 78
+I+I + SV+++A ++ A L V S + + N ++G + E L
Sbjct: 17 LLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAA 76
Query: 79 LINTVFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINII-GLMLFR-----D 132
L ++F++G + + G++ ++ P+P+ +P +++ I+ I II
Sbjct: 77 LAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVRRTQ 136
Query: 133 STTKHCDCFTSRLSVLVNAVSITDGLGAIMLVLSSICISHFDDNQFVQLYIDPLACIILS 192
S D + V++N +L ++ +S + D L + +
Sbjct: 137 SQAVRADMLHYQSDVMMNGA-----------ILLALGLSWYG-----WHRADALFALGIG 180
Query: 193 ILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDIISIHE 240
I LY + + L+ + E+ + + H+
Sbjct: 181 IYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS--WPGVSGAHD 226
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.025
Identities = 60/347 (17%), Positives = 100/347 (28%), Gaps = 145/347 (41%)
Query: 46 VVALAVACLSVIMSKKKSIRNTYGWAR-----VEILGVLINTVFLTGL-CFLMVIHGV-- 97
V A+A+A + W + + VL F G+ C +
Sbjct: 278 VTAVAIA-----ETD--------SWESFFVSVRKAITVL----FFIGVRC-----YEAYP 315
Query: 98 KRILEPSPVKEPKTILLIGIIGFIINIIGLMLFRDSTTKHCDCF------TSRLSV-LVN 150
L PS +++ G+ +++I L ++ + + ++ + LVN
Sbjct: 316 NTSLPPSILEDSLEN-NEGVPSPMLSISNLT--QEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 151 AVSITDGLGAIMLVLSSICISHFDDNQFVQLYIDPLACIILSILTLYIVNPLL-KTSALI 209
GA LV+S P + LY +N L K A
Sbjct: 373 --------GAKNLVVSG----------------PPQS--------LYGLNLTLRKAKA-- 398
Query: 210 LIQSTPQHID---VPELKRK-----------------LLHKYKDDIISIHEFLAEDKCFD 249
P +D +P +RK LL D I + + + F+
Sbjct: 399 -----PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK--DLVKNNVSFN 451
Query: 250 FDSI-----NTATHRCAGIEKETYKDDIIS-----IHEFHV-WQLESNRIIATLHIKFHD 298
I +T G + I I V W+ + + AT HI
Sbjct: 452 AKDIQIPVYDTFD----GSDLRVLSGSISERIVDCIIRLPVKWE-TTTQFKAT-HI---- 501
Query: 299 KQKYIEL------------HKKIQCFFHGLGVHSVTIQPEFLDLNSS 333
++ H+ G GV I LD+N
Sbjct: 502 ----LDFGPGGASGLGVLTHRNKD----GTGVR--VIVAGTLDINPD 538
Score = 34.6 bits (79), Expect = 0.053
Identities = 51/333 (15%), Positives = 95/333 (28%), Gaps = 126/333 (37%)
Query: 90 FLMVIHGVKRILEPSPVKEPKTILLIGIIGFI--------INIIGLMLFRDSTTKHCDC- 140
FL + V ++EPS V + +L + + F I+ + L +++ T
Sbjct: 64 FLG--Y-VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 141 ------FTSRL-----------SVLVNAVSITDGLGAIMLVLSSICISHFDDNQF----- 178
T+R+ S L AV +G ++ + F
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVG--EGNAQLVAI-------------FGGQGN 165
Query: 179 VQLYIDPLACIILSILTLY-----IVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKD 233
Y + L LY +V L+K SA L + +D K
Sbjct: 166 TDDYFEELR-------DLYQTYHVLVGDLIKFSAETLSELIRTTLDAE--------KVFT 210
Query: 234 DIISIHEFLAE-DKCFDFDSINTA-----------------THRCAGIEKETYKDDI--I 273
++I E+L D D + + T + G + +
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 274 SIHEFHVWQLESNRIIATLHI-------KFHDK-QKYIELHKKIQCFFHGLGVHSVTIQP 325
+ H S ++ + I F +K I + F +GV
Sbjct: 271 TGH--------SQGLVTAVAIAETDSWESFFVSVRKAITV------LFF-IGVRC---YE 312
Query: 326 EFLDLNSSANNRQSHCEIQCPQNG------MLC 352
+ + + + + +N ML
Sbjct: 313 AYPNTSLPPSILE-----DSLENNEGVPSPMLS 340
Score = 33.1 bits (75), Expect = 0.15
Identities = 52/260 (20%), Positives = 83/260 (31%), Gaps = 102/260 (39%)
Query: 8 KLLFMFVGTFSYFIIEITYGYKLNSVALIADSY--------LMFSNVVALAVACLSVIMS 59
+LF F+G Y Y +++ DS M S + L + ++
Sbjct: 301 TVLF-FIGVRCY----EAYPNTSLPPSILEDSLENNEGVPSPMLS-ISNLTQEQVQDYVN 354
Query: 60 KKKSIRNTYGWA--RVEILGVLINT----VFLTG----LCFL-MVIHGVK---------- 98
K N++ A +VEI L+N V ++G L L + + K
Sbjct: 355 K----TNSHLPAGKQVEI--SLVNGAKNLV-VSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 99 ----RILEPS----PVKEP-KTILLIGIIGFII--------------------------- 122
R L+ S PV P + LL+ I
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 123 ------NIIGL---MLFR-----DSTTK----HCDCF----TSRLSVLVNAVSITDGLGA 160
+I + R ++TT+ H F S L VL + DG G
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR--NKDGTGV 525
Query: 161 IMLVLSSICISHFDDNQFVQ 180
++V ++ I+ DD F Q
Sbjct: 526 RVIVAGTLDINPDDDYGFKQ 545
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane
protein complex, preprotein TRAN membrane insertion,;
2.90A {Pyrococcus furiosus}
Length = 61
Score = 27.3 bits (60), Expect = 1.5
Identities = 9/18 (50%), Positives = 16/18 (88%)
Query: 112 ILLIGIIGFIINIIGLML 129
I+LIG+IG +I I+G+++
Sbjct: 41 IILIGLIGMLIRIVGILI 58
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS
and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A
{Methanosarcina acetivorans}
Length = 194
Score = 28.4 bits (63), Expect = 2.8
Identities = 13/113 (11%), Positives = 38/113 (33%), Gaps = 3/113 (2%)
Query: 46 VVALAVACLSVIMSKKKSIRNTYGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSP 105
+V + + ++++N + + G+ FL + L+
Sbjct: 11 IVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTAVFSSYLDSFN 70
Query: 106 VKEPKTILLIGIIGFIINIIGLMLFRDSTTKHCDCFTSRLSVLVNAVSITDGL 158
+ P I + I+ + + LF + +++ L + + +G+
Sbjct: 71 INLP---DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGI 120
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 28.0 bits (62), Expect = 4.7
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 318 VHSVTIQPEFLDLNSSANNRQSHCEIQCPQNGMLCQKSTCC 358
+ SV + DL S A E C CQ+ +C
Sbjct: 154 LASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCS 194
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.0 bits (62), Expect = 5.3
Identities = 12/91 (13%), Positives = 22/91 (24%), Gaps = 32/91 (35%)
Query: 235 IISIHEFLAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHI 294
+ SI D+CF + +H + +H IA +
Sbjct: 227 LFSI------DRCFRREQKEDKSH----------------LMTYH--SASC--AIAGEGV 260
Query: 295 KFHDKQKYIELHKKIQCFFHGLGVHSVTIQP 325
+D + G + P
Sbjct: 261 DIND------GKAIAEGLLSQFGFTNFKFIP 285
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY,
membrane protein, protein channels, protein transport;
3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1
PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Length = 74
Score = 26.2 bits (57), Expect = 5.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 112 ILLIGIIGFIINIIGLML 129
I L+GIIG+II++ +
Sbjct: 45 ISLLGIIGYIIHVPATYI 62
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 27.6 bits (61), Expect = 7.8
Identities = 12/91 (13%), Positives = 22/91 (24%), Gaps = 32/91 (35%)
Query: 235 IISIHEFLAEDKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLESNRIIATLHI 294
+ SI D+CF + +H + +H IA +
Sbjct: 227 LFSI------DRCFRREQKEDKSH----------------LMTYH--SASC--AIAGEGV 260
Query: 295 KFHDKQKYIELHKKIQCFFHGLGVHSVTIQP 325
+D + G + P
Sbjct: 261 DIND------GKAIAEGLLSQFGFTNFKFIP 285
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.142 0.431
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,397,465
Number of extensions: 318203
Number of successful extensions: 851
Number of sequences better than 10.0: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 20
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.4 bits)