RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1590
         (365 letters)



>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
           {Escherichia coli [TaxId: 562]}
          Length = 204

 Score = 72.1 bits (176), Expect = 2e-15
 Identities = 34/204 (16%), Positives = 79/204 (38%), Gaps = 11/204 (5%)

Query: 9   LLFMFVGTFSYFIIEITYGYKLNSVALIADSYLMFSNVVALAVACLSVIMSKKKS-IRNT 67
            +          +I+I   +   SV+++A       ++ A     L V  S + +   ++
Sbjct: 9   AIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHS 68

Query: 68  YGWARVEILGVLINTVFLTGLCFLMVIHGVKRILEPSPVKEPKTILLIGIIGFIINIIGL 127
           +G  + E L  L  ++F++G    + + G++ ++ P+P+ +P   +++ I+  I  II +
Sbjct: 69  FGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILV 128

Query: 128 MLFRDSTTKHCDCFTSRLSVLVNAVSITDGLGAIMLVLSSICISHFDDNQFVQLYIDPLA 187
              R    +          +   +  + +G   + L LS           +     D L 
Sbjct: 129 SFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS----------WYGWHRADALF 178

Query: 188 CIILSILTLYIVNPLLKTSALILI 211
            + + I  LY    +   +   L+
Sbjct: 179 ALGIGIYILYSALRMGYEAVQSLL 202


>d1ji5a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus
           anthracis, Dlp-1 [TaxId: 1392]}
          Length = 142

 Score = 26.9 bits (59), Expect = 2.1
 Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 177 QFVQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDII 236
                +ID +A  IL+ +    V  + +   +  IQ          +   ++  Y+  ++
Sbjct: 44  TESATHIDEIAERILA-IGGKPVATMKEYLEISSIQEAAYGETAEGMVEAIMKDYEMMLV 102

Query: 237 SIHEFLAE-DKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLES 285
            + + +       D  + +                 I +  E H W L +
Sbjct: 103 ELKKGMEIAQNSDDEMTSDLLL-------------GIYTELEKHAWMLRA 139


>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium
           tumefaciens, Dps [TaxId: 358]}
          Length = 162

 Score = 26.9 bits (59), Expect = 2.8
 Identities = 13/108 (12%), Positives = 36/108 (33%), Gaps = 14/108 (12%)

Query: 179 VQLYIDPLACIILSILTLYIVNPLLKTSALILIQSTPQHIDVPELKRKLLHKYKDDIISI 238
           +  + D +A  ++ +    + +    +S   L         + +    L+ +Y +    I
Sbjct: 62  LDNHGDTIAERVVQLGGTALGSLQAVSSTTKLKAYPTDIYKIHDHLDALIERYGEVANMI 121

Query: 239 HEFLAE-DKCFDFDSINTATHRCAGIEKETYKDDIISIHEFHVWQLES 285
            + + + D+  D  + +  T                   +  +W LE+
Sbjct: 122 RKAIDDSDEAGDPTTADIFT-------------AASRDLDKSLWFLEA 156


>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 56

 Score = 24.6 bits (54), Expect = 3.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 112 ILLIGIIGFIINIIGLML 129
           I L+GIIG+II++    +
Sbjct: 34  ISLLGIIGYIIHVPATYI 51


>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 346

 Score = 25.8 bits (56), Expect = 8.7
 Identities = 17/126 (13%), Positives = 35/126 (27%), Gaps = 24/126 (19%)

Query: 219 DVPELKRKLLHK----------YKDDIISIHEFLAEDKCFDFDSINTATHRCAGIEKETY 268
           D+ +L+  +               +    +  +L  +  FD D+ +    RC        
Sbjct: 55  DIRDLEDYIRATAPYAVYSSVALYEKPQEMEGWLGTELVFDIDAKDLPLRRCEHEPGTVC 114

Query: 269 KDDIISIHEFHVWQLESNRIIATLHIKFHDKQKYIELHKKIQCFFHGLGVHSVTIQPEFL 328
                         L   + I    +    ++        I   + G G H   +    L
Sbjct: 115 PI-----------CLNDAKEIVRDTVIILREELGF---NDIHIIYSGRGYHIRVLDEWAL 160

Query: 329 DLNSSA 334
            L+S +
Sbjct: 161 KLDSKS 166


>d1ji4a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Helicobacter
           pylori, Nap [TaxId: 210]}
          Length = 144

 Score = 25.0 bits (54), Expect = 9.4
 Identities = 4/17 (23%), Positives = 11/17 (64%)

Query: 270 DDIISIHEFHVWQLESN 286
           DD ++  +  +W L+++
Sbjct: 126 DDQLAKLQKSIWMLQAH 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.431 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,342,614
Number of extensions: 61772
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 22
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)