BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15902
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WB8|A Chain A, Crystal Structure Of Haspin Kinase
          Length = 352

 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 16  NFTISRCFVGEKICYYDLSQDEELFEGEGDYQFDMYRMMRKQCQNNWQNFTPKNNAL 72
           ++T+SR      + + D+S DE+LF G+GDYQFD+YR+M+K+  N W  + P +N L
Sbjct: 241 DYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVL 297


>pdb|3DLZ|A Chain A, Crystal Structure Of Human Haspin In Complex With Amp
 pdb|3E7V|A Chain A, Crystal Structure Of Human Haspin With A
           Pyrazolo-Pyrimidine Ligand
 pdb|3F2N|A Chain A, Crystal Structure Of Human Haspin With An
           Imidazo-Pyridazine Ligand
 pdb|3FMD|A Chain A, Crystal Structure Of Human Haspin With An Isoquinoline
           Ligand
 pdb|3IQ7|A Chain A, Crystal Structure Of Human Haspin In Complex With
           5-Iodotubercidin
          Length = 357

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 16  NFTISRCFVGEKICYYDLSQDEELFEGEGDYQFDMYRMMRKQCQNNWQNFTPKNNAL 72
           ++T+SR      + + D+S DE+LF G+GDYQFD+YR+M+K+  N W  + P +N L
Sbjct: 246 DYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVL 302


>pdb|2VUW|A Chain A, Structure Of Human Haspin Kinase Domain
          Length = 336

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 16  NFTISRCFVGEKICYYDLSQDEELFEGEGDYQFDMYRMMRKQCQNNWQNFTPKNNAL 72
           ++T+SR      + + D+S DE+LF G+GDYQFD+YR+ +K+  N W  + P +N L
Sbjct: 225 DYTLSRLERDGIVVFCDVSXDEDLFTGDGDYQFDIYRLXKKENNNRWGEYHPYSNVL 281


>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
          Carboxypeptidase Ii In Complex With 2-Pmpa
          Length = 739

 Score = 26.9 bits (58), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 34 SQDEELFEGEGDYQFDMYRMMRKQCQNNWQNFTPKNN 70
          +Q  E  EG G    ++Y   R +  N   N TPK+N
Sbjct: 10 AQKIEWHEGSGSGSENLYFQGRSKSSNEATNITPKHN 46


>pdb|4EVV|A Chain A, Mouse Mbd4 Glycosylase Domain In Complex With A G:t
           Mismatch
 pdb|4EW0|A Chain A, Mouse Mbd4 Glycosylase Domain In Complex With A G:5hmu (5-
           Hydroxymethyluracil) Mismatch
          Length = 146

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 40  FEGEGDYQFDMYRMMRKQCQNNWQNFTPKNNALDI--DGLIESSQLLDV 86
             G G Y  D YR+    C N W+   P+N+ L+   D L E+ + L +
Sbjct: 100 LHGIGKYGNDSYRIF---CVNEWKQVHPENHKLNKYHDWLWENHEKLSL 145


>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
 pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
          Length = 122

 Score = 25.4 bits (54), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 4  LTDIRTQHFQVENFTISRCFVGEKICYYDLSQ 35
          L D+ T+  + E FT+  C+ GE+  Y  L++
Sbjct: 14 LADLITEALKKEMFTVDVCYDGEEGMYMALNE 45


>pdb|4IFB|A Chain A, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
 pdb|4IFB|B Chain B, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
          Length = 285

 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 42  GEGDYQFDMYRMMRKQCQNNWQNFTPKNNALDIDGLIE 79
           G  DY  D  +++RK    +W+N      A D D L +
Sbjct: 234 GSVDYVVDKAQLLRKGVSGDWKNHFTVAQAEDFDKLFQ 271


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,908,296
Number of Sequences: 62578
Number of extensions: 112878
Number of successful extensions: 164
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 8
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)