RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15902
(93 letters)
>gnl|CDD|204885 pfam12330, DUF3635, Domain of unknown function (DUF3635). This
family may be a potential Haspin-related
leucine-zipper. A leucine zipper was proposed to be
present towards the C-terminus of human Haspin,
(up-stream of the current family); however, as this
domain would appear to span several helices and be
largely within a loop structure, the actual zipper
might be further downstream, and be this family, which
is the very C-terminal part of the Sch. pombe sequence.
Length = 99
Score = 55.3 bits (133), Expect = 1e-11
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 37 EELFEGEGDYQFDMYRMMRKQCQNNWQNFTPKNNALDIDGLIESSQLLD 85
E+LF G+GDYQF++YR+MRK+ +N W F P N L + L +LLD
Sbjct: 1 EDLFNGKGDYQFEIYRLMRKELKNRWSEFEPYTNVLWLHYLS--DKLLD 47
>gnl|CDD|227404 COG5072, ALK1, Serine/threonine kinase of the haspin family [Cell
division and chromosome partitioning].
Length = 488
Score = 57.2 bits (138), Expect = 3e-11
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 16 NFTISRCFVGEKICYYDLSQDEELFEGEGDYQFDMYRMMRKQCQNNWQNFTPKNNALDID 75
+F +SR + I Y+ +LF G DYQF++YR+MR+ + W F P N L +
Sbjct: 364 DFKLSRLSYSQGIISYNRLDHPDLFNGVDDYQFEIYRLMRRLLKGRWAQFEPITNVLWLY 423
Query: 76 GLIES 80
L
Sbjct: 424 YLSHQ 428
>gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 29.8 bits (67), Expect = 0.16
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 10 QHFQVENFTISRCFVGEKICYYDLSQDEELF 40
Q FQ+ N I R F E++ Y+L D + F
Sbjct: 1326 QKFQINNDVIVRTFKEEQVRTYELRVDVDGF 1356
>gnl|CDD|239025 cd02107, YedY_like_Moco, YedY_like molybdopterin cofactor (Moco)
binding domain, a subgroup of the sulfite oxidase (SO)
family of molybdopterin binding domains. Escherichia
coli YedY has been propsed to form a heterodimer,
consisting of a soluble catalytic subunit termed YedY,
which is likely membrane-anchored by a heme-containing
trans-membrane subunit YedZ. Preliminary results
indicate that YedY may represent a new type of
membrane-associated bacterial reductase. Common
features of all known members of this family are that
they contain one single pterin cofactor and part of the
coordination of the metal (Mo) is a cysteine ligand of
the protein and that they catalyze the transfer of an
oxygen to or from a lone pair of electrons on the
substrate.
Length = 218
Score = 28.6 bits (64), Expect = 0.32
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 61 NWQNFTPKNNALDIDGLIESSQLLDVDGL 89
N N + + + GL++ + LD+D L
Sbjct: 19 NAGNLPTRPWTVSVSGLVKKPKTLDIDDL 47
>gnl|CDD|200526 cd11265, Sema_5C, The Sema domain, a protein interacting module, of
semaphorin 5C (sema5C). In Drosophila, Sema5C was
identified as an early development gene, which is
expressed in stage 2 embryos with a striped pattern
emerging at later stages. Sema5c may play a role in
odor-guided behavior and in tumorigenesis. Sema5C
belongs to class 5 semaphorin family of proteins, which
are transmembrane glycoproteins characterized by unique
thrombospondin specific repeats in the extracellular
region of the protein. Semaphorins are regulatory
molecules involved in the development of the nervous
system and in axonal guidance. They also play important
roles in other biological processes, such as
angiogenesis, immune regulation, respiration systems and
cancer. The Sema domain is located at the N-terminus and
contains four disulfide bonds formed by eight conserved
cysteine residues. It serves as a receptor-recognition
and -binding module.
Length = 433
Score = 26.7 bits (59), Expect = 1.6
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 25 GEKICYYDLSQDEELFEGEGDYQFDMYRMMRKQCQNNWQNFTPKNNALDIDGLIESS--Q 82
G +C ++LS F+G +Q + N+ +F +++ L+ESS Q
Sbjct: 271 GSAVCAFNLSSINAAFDGPFKHQESSGAAWERVNVNHRDHFNQCSSS-SSSHLLESSRYQ 329
Query: 83 LLD 85
L+D
Sbjct: 330 LMD 332
>gnl|CDD|241364 cd13210, PH-GRAM_MTMR6-like, Myotubularian (MTM) related (MTMR) 7
and 8 proteins Pleckstrin
Homology-Glucosyltransferases, Rab-like GTPase
activators and Myotubularins (PH-GRAM) domain. MTMR6,
MTMR7, and MRMR8 are all member of the myotubularin
dual specificity protein phosphatase gene family. They
bind to phosphoinositide lipids through its PH-GRAM
domain. These proteins also interact with each other as
well as MTMR9. They contain a N-terminal PH-GRAM
domain, a Rac-induced recruitment domain (RID) domain,
an active PTP domain, a SET-interaction domain, and a
C-terminal coiled-coil region. Myotubularin-related
proteins are a subfamily of protein tyrosine
phosphatases (PTPs) that dephosphorylate
D3-phosphorylated inositol lipids. Mutations in this
family cause the human neuromuscular disorders
myotubular myopathy and type 4B Charcot-Marie-Tooth
syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain
naturally occurring substitutions of residues required
for catalysis by PTP family enzymes. Although these
proteins are predicted to be enzymatically inactive,
they are thought to function as antagonists of
endogenous phosphatase activity or interaction modules.
Most MTMRs contain a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, a PTP
domain (which may be active or inactive), a
SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The
lipid-binding FYVE domain has been shown to bind
phosphotidylinositol-3-phosphate. The GRAM domain,
found in myotubularins, glucosyltransferases, and other
putative membrane-associated proteins, is part of a
larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 98
Score = 25.7 bits (57), Expect = 2.2
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 7 IRTQHFQVENFTISRCFVGEKICY 30
IR + F V F I + E+ C+
Sbjct: 67 IRCKTFLVVTFVIPK----ERDCH 86
>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation
factor (transactivator). This family includes EBV BRLF1
and similar ORF 50 proteins from other herpesviruses.
Length = 500
Score = 26.3 bits (58), Expect = 2.3
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 48 FDMYRMMRKQCQNNWQNFTPKNNALDIDG--LIESSQLLDVDGLIES 92
F + + RK+C W+ AL G ++ L +GLI
Sbjct: 61 FKLLKECRKKCLGAWRRLGGGRRALMTLGKQVLTCYNTLRAEGLISP 107
>gnl|CDD|178590 PLN03016, PLN03016, sinapoylglucose-malate O-sinapoyltransferase.
Length = 433
Score = 26.5 bits (58), Expect = 2.3
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 24 VGEKICYYDLSQDEELFE--GEGDYQFDMYRMMRKQCQNNWQNFTPKN 69
+G + Y D Q+ + G G ++Y M++ C N+ N P N
Sbjct: 205 LGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICNGNYYNVDPSN 252
>gnl|CDD|200516 cd11255, Sema_3G, The Sema domain, a protein interacting module, of
semaphorin 3G (Sema3G). Semaphorin 3G is identified as
a primarily endothelial cell- expressed class 3
semaphorin that controls endothelial and smooth muscle
cell functions in autocrine and paracrine manners,
respectively. It is mainly expressed in the lung and
kidney, and a little in the brain. Semaphorins are
regulatory molecules in the development of the nervous
system and in axonal guidance. They also play important
roles in other biological processes, such as
angiogenesis, immune regulation, respiration systems and
cancer. The Sema domain is located at the N-terminus and
contains four disulfide bonds formed by eight conserved
cysteine residues. It serves as a receptor-recognition
and -binding module.
Length = 474
Score = 26.4 bits (58), Expect = 2.3
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 18 TISRCFVGEKICYYDLSQDEELFEG-----EG-DYQFDMY 51
TIS F G +C Y ++ E+F G +G D+Q+ Y
Sbjct: 283 TISNVFQGFAVCVYSMADIWEVFNGPFAHKDGPDHQWGPY 322
>gnl|CDD|165857 PLN02213, PLN02213, sinapoylglucose-malate O-sinapoyltransferase/
carboxypeptidase.
Length = 319
Score = 25.8 bits (56), Expect = 3.8
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 23 FVGEKICYYDLSQDEEL--FEGEGDYQFDMYRMMRKQCQNNWQNFTPKN 69
+G + Y D Q+ + G G ++Y M++ C N+ N P N
Sbjct: 90 MLGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICNGNYYNVDPSN 138
>gnl|CDD|200596 cd10974, CE4_CDA_like_1, Putative catalytic domain of chitin
deacetylase-like proteins with additional chitin-binding
peritrophin-A domain (ChBD) and/or a low-density
lipoprotein receptor class A domain (LDLa). Chitin
deacetylases (CDAs, EC 3.5.1.41) are secreted
metalloproteins belonging to a family of extracellular
chitin-modifying enzymes that catalyze the
N-deacetylation of chitin, a beta-1,4-linked
N-acetylglucosamine polymer, to form chitosan, a polymer
of beta-(1,4)-linked d-glucosamine residues. CDAs have
been isolated and characterized from various bacterial
and fungal species and belong to the larger carbohydrate
esterase 4 (CE4) superfamily. This family includes many
CDA-like proteins mainly from insects, which contain a
putative CDA-like catalytic domain similar to the
catalytic NodB homology domain of CE4 esterases. In
addition to the CDA-like domain, family members contain
two additional domains, a chitin-binding peritrophin-A
domain (ChBD) and a low-density lipoprotein receptor
class A domain (LDLa), or have the ChBD domain but do
not have the LDLa domain.
Length = 269
Score = 25.4 bits (56), Expect = 5.1
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 40 FEGEGDYQFDMYRMMRKQCQNN 61
+ D Q D M C N
Sbjct: 176 LDVRDDPQGDEPLAMDDSCLNI 197
>gnl|CDD|177822 PLN02164, PLN02164, sulfotransferase.
Length = 346
Score = 25.3 bits (55), Expect = 5.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 27 KICYYDLSQDEELFEGEGD-------YQFDMYRMMRKQCQNNWQNFTPKNNALDIDGLIE 79
K+C ++ ++ E +GE D Y Y RK +WQN+ A IDGL+E
Sbjct: 276 KLCSFETLKNLEANKGEKDREDRPAVYANSAY--FRKGKVGDWQNYLTPEMAARIDGLME 333
>gnl|CDD|235431 PRK05363, PRK05363, TMAO/DMSO reductase; Reviewed.
Length = 280
Score = 25.2 bits (56), Expect = 6.2
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 61 NWQNFTPKNNALDIDGLIESSQLLDVDGLI 90
N + + IDG +E LD+D L+
Sbjct: 54 NAGSLKTDPWTVKIDGEVEKPGTLDIDDLL 83
>gnl|CDD|236137 PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.
Length = 665
Score = 24.7 bits (55), Expect = 7.8
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 7/27 (25%)
Query: 70 NALDIDGL----IESSQLLDVDGLIES 92
NA+DIDGL IE QL + GLI
Sbjct: 446 NAMDIDGLGEKIIE--QLFE-KGLIHD 469
>gnl|CDD|236873 PRK11186, PRK11186, carboxy-terminal protease; Provisional.
Length = 667
Score = 24.9 bits (55), Expect = 9.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 36 DEELFEGEGDYQFDMYRMMRK 56
D+EL G+ D +D+Y + +K
Sbjct: 99 DDELKSGKLDVAYDLYNLAQK 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.407
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,641,001
Number of extensions: 372110
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 19
Length of query: 93
Length of database: 10,937,602
Length adjustment: 60
Effective length of query: 33
Effective length of database: 8,276,362
Effective search space: 273119946
Effective search space used: 273119946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)