RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15902
         (93 letters)



>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase,
           CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo
           sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A*
           2wb8_A
          Length = 336

 Score = 59.5 bits (143), Expect = 3e-12
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 16  NFTISRCFVGEKICYYDLSQDEELFEGEGDYQFDMYRMMRKQCQNNWQNFTPKNNAL 72
           ++T+SR      + + D+S DE+LF G+GDYQFD+YR+M+K+  N W  + P +N L
Sbjct: 225 DYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVL 281


>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC
           AMP; 2.30A {Escherichia coli}
          Length = 671

 Score = 26.7 bits (60), Expect = 1.0
 Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 7/27 (25%)

Query: 70  NALDIDGL----IESSQLLDVDGLIES 92
            A+D+DG+    I+  QL++    + +
Sbjct: 447 RAMDVDGMGDKIID--QLVE-KEYVHT 470


>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A
           {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2
           PDB: 1v9p_A*
          Length = 667

 Score = 26.3 bits (59), Expect = 1.5
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 7/27 (25%)

Query: 70  NALDIDGL----IESSQLLDVDGLIES 92
            A+DI+GL    IE  +LL+  GL+  
Sbjct: 442 KAMDIEGLGEKLIE--RLLE-KGLVRD 465


>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
          Length = 615

 Score = 26.0 bits (58), Expect = 2.1
 Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 3/25 (12%)

Query: 70  NALDIDGLIES--SQLLDVDGLIES 92
           N LDI+ L       LL    +I  
Sbjct: 458 NGLDIEVLGYEAGVALLQ-AKVIAD 481


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0799    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,453,806
Number of extensions: 72986
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 6
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)