RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15902
         (93 letters)



>d1xdya_ d.176.1.1 (A:) Bacterial sulfite oxidase YedY
          {Escherichia coli [TaxId: 562]}
          Length = 269

 Score = 25.0 bits (54), Expect = 1.5
 Identities = 7/29 (24%), Positives = 9/29 (31%)

Query: 63 QNFTPKNNALDIDGLIESSQLLDVDGLIE 91
           +       L I G +     LD D L  
Sbjct: 44 GSLKTDPWTLKISGEVAKPLTLDHDDLTR 72


>d3lyna_ a.19.1.1 (A:) Lysin {Green abalone (Haliotis fulgens)
          [TaxId: 6456]}
          Length = 122

 Score = 24.4 bits (53), Expect = 1.8
 Identities = 5/16 (31%), Positives = 11/16 (68%)

Query: 50 MYRMMRKQCQNNWQNF 65
          ++ + R+  Q +WQN+
Sbjct: 40 LFFVNRRYMQTHWQNY 55


>d2lisa_ a.19.1.1 (A:) Lysin {Red abalone (Haliotis rufescens)
          [TaxId: 6454]}
          Length = 131

 Score = 23.6 bits (51), Expect = 3.7
 Identities = 5/16 (31%), Positives = 10/16 (62%)

Query: 50 MYRMMRKQCQNNWQNF 65
          +Y + R+  Q +W N+
Sbjct: 47 LYFVNRRYMQTHWANY 62


>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 476

 Score = 22.8 bits (48), Expect = 9.4
 Identities = 3/43 (6%), Positives = 8/43 (18%), Gaps = 11/43 (25%)

Query: 28  ICYYDLSQDEELFEGEGDYQFDMYRMMRKQCQNNWQNFTPKNN 70
           +C + +    + F                +            N
Sbjct: 323 MCAFPIKYVNDFFNKI-----------VNKNNVRCLQHFYGPN 354


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 368,475
Number of extensions: 15525
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 11
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)