BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15905
(60 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BMA6|SRP68_MOUSE Signal recognition particle 68 kDa protein OS=Mus musculus GN=Srp68
PE=2 SV=2
Length = 625
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 10/54 (18%)
Query: 2 QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGW 55
QPIP KPLFFDLA N + FP LEDKL+ K K +G++G++KG++G+
Sbjct: 580 QPIPCKPLFFDLALNHVAFPPLEDKLEQKTK----------SGLTGYIKGIFGF 623
>sp|Q9UHB9|SRP68_HUMAN Signal recognition particle 68 kDa protein OS=Homo sapiens GN=SRP68
PE=1 SV=2
Length = 627
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 10/54 (18%)
Query: 2 QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGW 55
QPIP KPLFFDLA N + FP LEDKL+ K K +G++G++KG++G+
Sbjct: 582 QPIPCKPLFFDLALNHVAFPPLEDKLEQKTK----------SGLTGYIKGIFGF 625
>sp|Q00004|SRP68_CANFA Signal recognition particle 68 kDa protein OS=Canis familiaris
GN=SRP68 PE=1 SV=1
Length = 622
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 10/54 (18%)
Query: 2 QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGW 55
QPIP KPLFFDLA N + FP LEDKL+ K K +G++G++KG++G+
Sbjct: 577 QPIPCKPLFFDLALNHVAFPPLEDKLEQKTK----------SGLTGYIKGIFGF 620
>sp|Q9VSS2|SRP68_DROME Signal recognition particle 68 kDa protein OS=Drosophila
melanogaster GN=Srp68 PE=2 SV=1
Length = 604
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 8/50 (16%)
Query: 1 MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVK 50
M+PIP KP+FFDLA +E PSLE KL+ P G S I+GFVK
Sbjct: 552 MEPIPCKPIFFDLAMTYVELPSLEGKLE---SPGKKGAS-----ITGFVK 593
>sp|Q1ZXE8|SRP68_DICDI Signal recognition particle subunit SRP68 OS=Dictyostelium
discoideum GN=srp68 PE=3 SV=1
Length = 614
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 12/57 (21%)
Query: 1 MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPA-GISGFVKGLWGWG 56
+QP+ AKP+FFDLA N + FPSL+ + G +G P+ G+ GF WG G
Sbjct: 569 LQPVQAKPIFFDLAFNSVTFPSLDQR-------KKGSSTGTPSKGLFGF----WGRG 614
>sp|Q20822|SRP68_CAEEL Probable signal recognition particle 68 kDa protein
OS=Caenorhabditis elegans GN=F55C5.8 PE=3 SV=2
Length = 622
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 3 PIPAKPLFFDLAQNQLEFPSLEDKLD 28
P+P KP+FFDLA L P+++D+L+
Sbjct: 545 PMPNKPIFFDLANFHLTMPNVDDRLE 570
>sp|C4XNQ1|RS9_DESMR 30S ribosomal protein S9 OS=Desulfovibrio magneticus (strain ATCC
700980 / DSM 13731 / RS-1) GN=rpsI PE=3 SV=1
Length = 130
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 7 KPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGIS 46
+P + + L LE +LDVK+ A GG +GQ +
Sbjct: 41 RPTLLAIVRQALALTKLEGRLDVKVNVAGGGMTGQAEAVR 80
>sp|Q8QZQ9|209R_IIV6 Uncharacterized protein 209R OS=Invertebrate iridescent virus 6
GN=IIV6-209R PE=4 SV=1
Length = 1046
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 7 KPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGIS 46
K ++ + QN +EF L K +KI+P A GG GQ ++
Sbjct: 49 KKMYNPMIQNSVEFCDLLAKNILKIQPFAQGGFGQVGSLT 88
>sp|Q9NR34|MA1C1_HUMAN Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC OS=Homo sapiens
GN=MAN1C1 PE=2 SV=1
Length = 630
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 26 KLDVKIKPAAGGGSGQPAGISGFVKGLWGWGGA 58
+L K+ PA +G P G+ F G WGW A
Sbjct: 286 RLGEKLLPAFNTPTGIPKGVVSFKSGNWGWATA 318
>sp|Q60AF7|RS9_METCA 30S ribosomal protein S9 OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=rpsI PE=3 SV=1
Length = 130
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 18 LEFPSLEDKLDVKIKPAAGGGSGQPAGI-SGFVKGL 52
LE + DKLDV +K GG SGQ I G + L
Sbjct: 52 LEAVEMTDKLDVNVKVIGGGPSGQAGAIRHGLARAL 87
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.141 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,351,191
Number of Sequences: 539616
Number of extensions: 989601
Number of successful extensions: 2862
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2844
Number of HSP's gapped (non-prelim): 15
length of query: 60
length of database: 191,569,459
effective HSP length: 33
effective length of query: 27
effective length of database: 173,762,131
effective search space: 4691577537
effective search space used: 4691577537
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)