Query psy15905
Match_columns 60
No_of_seqs 100 out of 147
Neff 4.5
Searched_HMMs 29240
Date Sat Aug 17 00:36:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gku_A Probable RNA-binding pr 47.5 4.6 0.00016 27.4 0.3 12 48-59 40-51 (225)
2 1oey_J P40-PHOX, neutrophil cy 29.4 13 0.00044 23.1 0.2 16 11-26 49-64 (107)
3 1pxq_A Subtilisin A; thioether 20.4 9.7 0.00033 19.2 -1.3 8 49-56 27-35 (35)
4 1ijy_A Frizzled homolog 8; WNT 18.3 29 0.00098 21.2 0.2 21 3-24 12-32 (130)
5 2yq2_A BVDV1 E2; viral protein 16.6 28 0.00097 25.3 -0.1 9 1-9 273-281 (337)
6 4aie_A Glucan 1,6-alpha-glucos 14.4 61 0.0021 22.5 1.2 11 9-19 96-106 (549)
7 1z2i_A Malate dehydrogenase; s 13.8 80 0.0027 22.4 1.7 20 7-26 178-197 (358)
8 1jsd_B Haemagglutinin (HA2 cha 13.7 70 0.0024 21.3 1.2 15 43-57 12-26 (176)
9 2rft_B Influenza B hemagglutin 12.8 69 0.0024 21.3 1.0 14 43-56 12-25 (176)
10 3ku3_B Hemagglutinin HA2 chain 12.7 75 0.0026 21.1 1.2 14 43-56 12-25 (174)
No 1
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=47.54 E-value=4.6 Score=27.44 Aligned_cols=12 Identities=25% Similarity=0.338 Sum_probs=7.5
Q ss_pred ceeeeeeecCCC
Q psy15905 48 FVKGLWGWGGAK 59 (60)
Q Consensus 48 ~kkGwFGfGr~~ 59 (60)
..+||||||++.
T Consensus 40 g~kGffGiG~k~ 51 (225)
T 3gku_A 40 GSAGFLGIGSKP 51 (225)
T ss_dssp CBCCC--CCCBC
T ss_pred CCCccccccCce
Confidence 378999999863
No 2
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=29.36 E-value=13 Score=23.11 Aligned_cols=16 Identities=19% Similarity=-0.047 Sum_probs=12.8
Q ss_pred eeeccccccCCCCcch
Q psy15905 11 FDLAQNQLEFPSLEDK 26 (60)
Q Consensus 11 fDlA~Nyi~yP~~~~~ 26 (60)
.|||.||.+....=-|
T Consensus 49 ~DIaLNYrD~eGDLIr 64 (107)
T 1oey_J 49 EDIALNYRDAEGDLVR 64 (107)
T ss_dssp SSEEEEEECTTSCEEE
T ss_pred cceeeeeecCCCCEEE
Confidence 5999999999875444
No 3
>1pxq_A Subtilisin A; thioether bridge, cyclic peptide, bacteriocin, antimicrobial; HET: 2TL DPN; NMR {Bacillus subtilis} SCOP: j.5.1.2
Probab=20.42 E-value=9.7 Score=19.20 Aligned_cols=8 Identities=63% Similarity=1.705 Sum_probs=4.9
Q ss_pred eeeeee-ec
Q psy15905 49 VKGLWG-WG 56 (60)
Q Consensus 49 kkGwFG-fG 56 (60)
.-|+|| ||
T Consensus 27 ~aglfg~wg 35 (35)
T 1pxq_A 27 AXGLFGLWG 35 (35)
T ss_dssp TTHHHHHHC
T ss_pred hhhhccccC
Confidence 346777 65
No 4
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure, cysteine-rich, signaling protein; 1.35A {Mus musculus} SCOP: a.141.1.1
Probab=18.34 E-value=29 Score=21.15 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=16.0
Q ss_pred ccCCCceeeeeccccccCCCCc
Q psy15905 3 PIPAKPLFFDLAQNQLEFPSLE 24 (60)
Q Consensus 3 pvp~KPiffDlA~Nyi~yP~~~ 24 (60)
||+ -|+=.||.+|+..||++-
T Consensus 12 pI~-~~~C~~l~Yn~T~~PN~l 32 (130)
T 1ijy_A 12 EIT-VPLCKGIGYEYTYMPNQF 32 (130)
T ss_dssp ECC-CGGGTTSSCCEECSSCTT
T ss_pred eCC-hhHhCCCCCCeeECCCcC
Confidence 444 456668999999999964
No 5
>2yq2_A BVDV1 E2; viral protein, pestivirus, virus fusion; HET: NAG; 2.58A {Bovine viral diarrhea virus 1} PDB: 2yq3_A*
Probab=16.58 E-value=28 Score=25.31 Aligned_cols=9 Identities=44% Similarity=1.139 Sum_probs=7.5
Q ss_pred CCccCCCce
Q psy15905 1 MQPIPAKPL 9 (60)
Q Consensus 1 ~~pvp~KPi 9 (60)
|-||||||.
T Consensus 273 LgPMPCkP~ 281 (337)
T 2yq2_A 273 LGPMPCKPY 281 (337)
T ss_dssp SEECSSEES
T ss_pred CCCCCCCcc
Confidence 459999997
No 6
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=14.39 E-value=61 Score=22.46 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=9.8
Q ss_pred eeeeecccccc
Q psy15905 9 LFFDLAQNQLE 19 (60)
Q Consensus 9 iffDlA~Nyi~ 19 (60)
|++|+.+||..
T Consensus 96 VilD~V~NHts 106 (549)
T 4aie_A 96 IVMDLVVNHTS 106 (549)
T ss_dssp EEEEECCSBCC
T ss_pred EEEEECccCCc
Confidence 78999999985
No 7
>1z2i_A Malate dehydrogenase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: NAD; 2.20A {Agrobacterium tumefaciens}
Probab=13.80 E-value=80 Score=22.37 Aligned_cols=20 Identities=15% Similarity=0.306 Sum_probs=16.0
Q ss_pred CceeeeeccccccCCCCcch
Q psy15905 7 KPLFFDLAQNQLEFPSLEDK 26 (60)
Q Consensus 7 KPiffDlA~Nyi~yP~~~~~ 26 (60)
.|++||+|-.-+.+=.+...
T Consensus 178 ~p~vlDmAtS~vA~Gki~~a 197 (358)
T 1z2i_A 178 MPWLLDMATSAVPYNRVLLY 197 (358)
T ss_dssp CCEEEEECSBSSCTHHHHHH
T ss_pred CcEEEEeeccccchHHHHHH
Confidence 39999999998888766544
No 8
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Probab=13.66 E-value=70 Score=21.28 Aligned_cols=15 Identities=33% Similarity=0.780 Sum_probs=11.7
Q ss_pred CCCCCceeeeeeecC
Q psy15905 43 AGISGFVKGLWGWGG 57 (60)
Q Consensus 43 ~g~~~~kkGwFGfGr 57 (60)
.|-+|.+-||+||.-
T Consensus 12 ggw~gmi~gwyg~~h 26 (176)
T 1jsd_B 12 GGWPGLVAGWYGFQH 26 (176)
T ss_dssp CCBTTCCSCSEEEEE
T ss_pred cCcchhhcceeeeee
Confidence 456788999999853
No 9
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope Pro fusion protein, membrane, transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB: 2rfu_B* 3bt6_B*
Probab=12.82 E-value=69 Score=21.30 Aligned_cols=14 Identities=29% Similarity=0.741 Sum_probs=11.3
Q ss_pred CCCCCceeeeeeec
Q psy15905 43 AGISGFVKGLWGWG 56 (60)
Q Consensus 43 ~g~~~~kkGwFGfG 56 (60)
.|-+|.+-||+||.
T Consensus 12 ggw~gmi~gwyg~~ 25 (176)
T 2rft_B 12 GGWEGMIAGWHGYT 25 (176)
T ss_dssp CBCTTCCSCSEEEE
T ss_pred cCcchhhcceeeee
Confidence 45678899999985
No 10
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B* 2fk0_B* 3fku_B* 4fqi_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B* 3r2x_B* ...
Probab=12.73 E-value=75 Score=21.10 Aligned_cols=14 Identities=36% Similarity=0.878 Sum_probs=11.2
Q ss_pred CCCCCceeeeeeec
Q psy15905 43 AGISGFVKGLWGWG 56 (60)
Q Consensus 43 ~g~~~~kkGwFGfG 56 (60)
.|-+|.+-||.||.
T Consensus 12 gGW~Gmi~GWyG~~ 25 (174)
T 3ku3_B 12 GGWQGMVDGWYGYH 25 (174)
T ss_dssp SCBTTCCSCSEEEE
T ss_pred cCchhhhhhhhhce
Confidence 45678899999985
Done!