RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15905
         (60 letters)



>gnl|CDD|237459 PRK13655, PRK13655, phosphoenolpyruvate carboxylase; Provisional.
          Length = 494

 Score = 24.9 bits (55), Expect = 2.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 23  LEDKLDVKIKPAAGGGS 39
           LE++L V+I P  G GS
Sbjct: 229 LEEELGVEIYPILGVGS 245


>gnl|CDD|226328 COG3806, ChrR, Transcriptional activator [Transcription].
          Length = 216

 Score = 24.4 bits (53), Expect = 4.1
 Identities = 6/23 (26%), Positives = 9/23 (39%)

Query: 33  PAAGGGSGQPAGISGFVKGLWGW 55
               G    P+ + G + G W W
Sbjct: 88  RNPDGSIHLPSVLEGALLGPWRW 110


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0849    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,172,735
Number of extensions: 225787
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 4
Length of query: 60
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 29
Effective length of database: 9,562,628
Effective search space: 277316212
Effective search space used: 277316212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.0 bits)