RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15905
         (60 letters)



>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast
           ribosome, ribonucleoprotein particle, macromolecular
           complex; 9.40A {Spinacea oleracea}
          Length = 197

 Score = 24.7 bits (54), Expect = 2.0
 Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 18  LEFPSLEDKLDVKIKPAAGGGSGQPAG 44
           L     E   DV +K   GG SGQ A 
Sbjct: 119 LATLGYETNYDVFVKAHGGGLSGQ-AQ 144


>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA,
          transfer RNA, 16S ribosomal subunit, RRF; 3.00A
          {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 2wwl_I
          3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I
          3r8o_I 4a2i_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I
          2i2u_I ...
          Length = 127

 Score = 24.0 bits (53), Expect = 2.9
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 18 LEFPSLEDKLDVKIKPAAGGGSGQPAG 44
          LE   + +KLD+ I    GG SGQ AG
Sbjct: 49 LELVDMVEKLDLYITVKGGGISGQ-AG 74


>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding,
          rRNA-binding, metal-binding, zinc-finger, translation;
          HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP:
          d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I
          1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I
          1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I*
          1n34_I ...
          Length = 128

 Score = 23.6 bits (52), Expect = 3.5
 Identities = 8/27 (29%), Positives = 9/27 (33%), Gaps = 1/27 (3%)

Query: 18 LEFPSLEDKLDVKIKPAAGGGSGQPAG 44
          L       + D  I    GG SGQ   
Sbjct: 50 LRAVDALGRFDAYITVRGGGKSGQ-ID 75


>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
           cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
           sapiens}
          Length = 318

 Score = 23.7 bits (52), Expect = 5.0
 Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 1/31 (3%)

Query: 23  LEDKLDVKIKPAAGGGSGQPAGISGFVKGLW 53
           L       +    GGG      ++G ++  W
Sbjct: 152 LRTPPGALVLAVGGGG-LLAGVVAGLLEVGW 181


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0852    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 955,994
Number of extensions: 43379
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 4
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.2 bits)