BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15906
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
Length = 632
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 55 FGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDP 114
FG L + + F+L + G+ + GVF+P L GA +GRL+ ++ +F A I P
Sbjct: 316 FGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNA--IVP 373
Query: 115 GKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDI 174
G YA++GAAA GV R +S +I+ E TG I +P++++++ A +G+ F LY+
Sbjct: 374 GSYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYET 432
Query: 175 HIQLSGIPLLAWDPPPLSSNITARIVKSHPV 205
+ + +P + S +TAR + HP+
Sbjct: 433 LVLMKHLPYMPILRRDRSPEMTAREIM-HPI 462
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
Length = 473
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|B Chain B, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
Length = 473
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
Length = 473
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|2EXW|A Chain A, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|B Chain B, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
Length = 473
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
Length = 473
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|B Chain B, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
Length = 473
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|2EZ0|B Chain B, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
Length = 473
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
Length = 473
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|B Chain B, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
Length = 473
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
pdb|3EJZ|B Chain B, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
Length = 473
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
Length = 473
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 QYH-LEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTS|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|2FEE|A Chain A, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|B Chain B, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2H2P|A Chain A, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2P|B Chain B, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
Length = 465
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+
Transporter
Length = 465
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 QYH-LEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLWLPMIITGLGATLLAQF 438
>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEC|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
Length = 465
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
Length = 465
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|2H2S|A Chain A, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|B Chain B, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|4FG6|A Chain A, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|B Chain B, Structure Of Ecclc E148a Mutant In Glutamate
Length = 465
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER
CLC-Ec1 From E.Coli
Length = 465
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 381 QYH-LEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|C Chain C, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|D Chain D, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
Length = 473
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P A G FS+ + + +T + ++ + GG+F P L G G F + +FP
Sbjct: 321 PIAAAGNFSVGLLLFIFITRVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAAVLFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF 167
+ ++ G +A+ G A + VR ++ ++++E T N LP+++T + A + F
Sbjct: 381 Q-YHLEAGTFAIAGMGALMAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFL 439
>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|B Chain B, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
Length = 444
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 305 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 364
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 365 QYH-LEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 422
>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|B Chain B, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 446
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 306 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 365
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 366 QYH-LEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 423
>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|B Chain B, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
Length = 444
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51 PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
P G FS+ + V V + ++ + GG+F P L G G F + +FP
Sbjct: 305 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 364
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
+ ++ G +A+ G A L +R ++ I+++E T N LP+++T + A + F
Sbjct: 365 QYH-LEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 422
>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
Length = 466
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 68 FLLSVWTYGVSVSGGVFIPCL----LTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAA 123
FLL++ YG GG+F P L + A R F L S PE P A+ G
Sbjct: 333 FLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPE-----PAVMAIAGMG 387
Query: 124 AQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGD 165
A + VR ++ ++ IE T N LPL++T + A + +
Sbjct: 388 ALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAE 429
>pdb|1OSN|A Chain A, Crystal Structure Of Varicella Zoster Virus Thymidine
Kinase In Complex With Bvdu-Mp And Adp
pdb|1OSN|B Chain B, Crystal Structure Of Varicella Zoster Virus Thymidine
Kinase In Complex With Bvdu-Mp And Adp
pdb|1OSN|C Chain C, Crystal Structure Of Varicella Zoster Virus Thymidine
Kinase In Complex With Bvdu-Mp And Adp
pdb|1OSN|D Chain D, Crystal Structure Of Varicella Zoster Virus Thymidine
Kinase In Complex With Bvdu-Mp And Adp
Length = 341
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 267 SHKGDASRKDSPGRLVGL----ILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRY 322
SH S++ PG V L +LR+ I+LI I+ + NW HA +
Sbjct: 179 SHLSRVSKRARPGETVNLPFVMVLRNVYIMLINTIIFLKTNNW----------HAGWNTL 228
Query: 323 PSVNDLVVSENDRSFTVKL 341
ND+ + +S +KL
Sbjct: 229 SFCNDVFKQKLQKSECIKL 247
>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
pdb|4EEZ|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
Length = 348
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 201 KSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
K P++ R LE + +IID +KA G ++D
Sbjct: 305 KVKPIVATRKLEEINDIIDEMKAGKIEGRMVID 337
>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase
pdb|4EEX|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase
Length = 348
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 201 KSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
K P++ R LE + +IID +KA G ++D
Sbjct: 305 KVKPIVATRKLEEINDIIDEMKAGKIEGRMVID 337
>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|B Chain B, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|C Chain C, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|D Chain D, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|E Chain E, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|F Chain F, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|G Chain G, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|H Chain H, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
Length = 443
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 10 PLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSV----RTMLHDPKGAF 55
P E T+ +++ G+YN + +W +V EK++ + ++ DPK F
Sbjct: 357 PFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARF 406
>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6U|B Chain B, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
Length = 419
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 10 PLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSV----RTMLHDPKGAF 55
P E T+ +++ G+YN + +W +V EK++ + ++ DPK F
Sbjct: 343 PFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARF 392
>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1531
Length = 322
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 16 TEHAVQMYCED----GEYNTLAALWLQVPEKSV----RTMLHDPKGAF 55
+EH Q+ +D G+YN + +W +V EK++ + ++ DPK F
Sbjct: 220 SEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARF 267
>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In
Complex With Inhibitor Pv1533
Length = 322
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 16 TEHAVQMYCED----GEYNTLAALWLQVPEKSV----RTMLHDPKGAF 55
+EH Q+ +D G+YN + +W +V EK++ + ++ DPK F
Sbjct: 219 SEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARF 266
>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A
Specific Inhibitor
pdb|2W7X|A Chain A, Cellular Inhibition Of Checkpoint Kinase 2 And
Potentiation Of Cytotoxic Drugs By Novel Chk2 Inhibitor
Pv1019
pdb|2YIQ|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1322
pdb|2YIR|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1352
pdb|2YIT|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Pv1162, A Novel Inhibitor
pdb|2YCQ|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1115
pdb|2YCS|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Pv788
Length = 323
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 16 TEHAVQMYCED----GEYNTLAALWLQVPEKSV----RTMLHDPKGAF 55
+EH Q+ +D G+YN + +W +V EK++ + ++ DPK F
Sbjct: 220 SEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARF 267
>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv976
Length = 323
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 16 TEHAVQMYCED----GEYNTLAALWLQVPEKSV----RTMLHDPKGAF 55
+EH Q+ +D G+YN + +W +V EK++ + ++ DPK F
Sbjct: 220 SEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARF 267
>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp
pdb|2CN8|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Debromohymenialdisine
pdb|2WTC|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTD|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTI|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTJ|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2XBJ|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2XM8|A Chain A, Co-Crystal Structure Of A Small Molecule Inhibitor Bound
To The Kinase Domain Of Chk2
pdb|2XM9|A Chain A, Structure Of A Small Molecule Inhibitor With The Kinase
Domain Of Chk2
pdb|4A9R|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9S|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9T|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9U|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
Length = 329
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 16 TEHAVQMYCED----GEYNTLAALWLQVPEKSV----RTMLHDPKGAF 55
+EH Q+ +D G+YN + +W +V EK++ + ++ DPK F
Sbjct: 226 SEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARF 273
>pdb|3CNX|A Chain A, Crystal Structure Of A Putative Dehydratase From The
Ntf2-Like Family (Sav_4671) From Streptomyces
Avermitilis At 2.10 A Resolution
pdb|3CNX|B Chain B, Crystal Structure Of A Putative Dehydratase From The
Ntf2-Like Family (Sav_4671) From Streptomyces
Avermitilis At 2.10 A Resolution
pdb|3CNX|C Chain C, Crystal Structure Of A Putative Dehydratase From The
Ntf2-Like Family (Sav_4671) From Streptomyces
Avermitilis At 2.10 A Resolution
Length = 170
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 25 EDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFS 59
E G++ TL++LWL + V HDP A GV S
Sbjct: 26 ERGDFETLSSLWLTPADLGVDEEYHDPADA-GVVS 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,845,300
Number of Sequences: 62578
Number of extensions: 439985
Number of successful extensions: 798
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 36
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)