Query psy15906
Match_columns 352
No_of_seqs 351 out of 2445
Neff 7.1
Searched_HMMs 46136
Date Sat Aug 17 00:37:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474|consensus 100.0 3.5E-72 7.6E-77 556.2 18.0 306 4-352 395-703 (762)
2 KOG0475|consensus 100.0 3.4E-41 7.3E-46 336.2 17.3 257 39-351 370-651 (696)
3 PRK01862 putative voltage-gate 100.0 2.5E-37 5.4E-42 320.5 23.3 252 37-296 296-572 (574)
4 KOG0476|consensus 100.0 8.5E-36 1.9E-40 301.6 7.0 203 57-301 442-653 (931)
5 cd03685 ClC_6_like ClC-6-like 99.9 1.4E-27 3E-32 241.7 15.5 128 59-187 335-462 (466)
6 cd03684 ClC_3_like ClC-3-like 99.9 1.1E-27 2.4E-32 241.1 14.5 147 38-184 267-445 (445)
7 cd03683 ClC_1_like ClC-1-like 99.9 4.1E-26 9E-31 228.7 13.7 129 57-186 292-426 (426)
8 cd01031 EriC ClC chloride chan 99.9 3.2E-25 7E-30 220.8 15.9 137 37-177 265-402 (402)
9 PRK01610 putative voltage-gate 99.9 5.8E-25 1.3E-29 219.8 16.9 139 37-179 278-417 (418)
10 PRK05277 chloride channel prot 99.9 3.8E-24 8.3E-29 215.3 16.7 138 38-179 279-417 (438)
11 cd01036 ClC_euk Chloride chann 99.9 1.5E-24 3.2E-29 216.9 12.1 117 57-173 293-416 (416)
12 PF00654 Voltage_CLC: Voltage 99.9 6.6E-24 1.4E-28 208.2 13.7 131 36-166 225-355 (355)
13 COG0038 EriC Chloride channel 99.9 2E-23 4.4E-28 210.0 16.4 144 38-185 293-437 (443)
14 cd01033 ClC_like Putative ClC 99.9 1.4E-22 3E-27 201.1 16.1 126 37-168 261-387 (388)
15 cd01034 EriC_like ClC chloride 99.9 8.2E-22 1.8E-26 195.7 13.3 125 37-173 265-390 (390)
16 cd00400 Voltage_gated_ClC CLC 99.8 4.3E-20 9.4E-25 182.9 14.6 121 37-161 263-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 99.8 1.9E-19 4.1E-24 178.1 13.7 119 37-173 259-378 (378)
18 PRK03655 putative ion channel 99.7 2.4E-17 5.2E-22 164.6 13.9 115 37-165 280-398 (414)
19 COG4109 Predicted transcriptio 99.4 4.3E-14 9.2E-19 134.4 3.8 134 148-297 155-308 (432)
20 cd00400 Voltage_gated_ClC CLC 99.3 7.1E-12 1.5E-16 124.2 12.2 122 38-168 63-187 (383)
21 cd01031 EriC ClC chloride chan 99.3 1E-11 2.2E-16 124.0 12.1 121 38-167 64-187 (402)
22 COG3448 CBS-domain-containing 99.2 2.1E-10 4.6E-15 107.2 12.2 108 192-299 242-376 (382)
23 COG2524 Predicted transcriptio 99.2 2.4E-11 5.1E-16 111.6 4.9 104 192-295 169-291 (294)
24 PRK05277 chloride channel prot 99.1 3.8E-10 8.3E-15 113.9 11.8 123 38-168 71-198 (438)
25 COG3620 Predicted transcriptio 99.0 2.6E-10 5.7E-15 97.8 5.5 104 193-296 63-185 (187)
26 cd03682 ClC_sycA_like ClC sycA 99.0 3.2E-09 6.8E-14 105.3 12.0 121 39-168 57-181 (378)
27 PF00571 CBS: CBS domain CBS d 99.0 1.6E-09 3.4E-14 77.6 6.9 56 197-295 1-56 (57)
28 PRK10892 D-arabinose 5-phospha 98.9 2.5E-09 5.4E-14 103.7 6.0 126 168-293 169-323 (326)
29 PF00654 Voltage_CLC: Voltage 98.8 3.1E-08 6.6E-13 97.5 12.7 127 38-173 19-151 (355)
30 COG0038 EriC Chloride channel 98.8 2.5E-08 5.4E-13 100.9 12.3 122 38-168 91-216 (443)
31 PRK11543 gutQ D-arabinose 5-ph 98.8 4.8E-09 1E-13 101.4 6.6 126 168-293 164-318 (321)
32 PRK01862 putative voltage-gate 98.8 5.3E-08 1.2E-12 101.6 12.0 117 41-167 100-219 (574)
33 cd03685 ClC_6_like ClC-6-like 98.7 3.2E-08 6.9E-13 100.8 7.2 123 38-166 105-242 (466)
34 PRK01610 putative voltage-gate 98.7 1.6E-07 3.4E-12 94.4 11.3 98 64-167 100-200 (418)
35 cd03684 ClC_3_like ClC-3-like 98.6 1.8E-07 3.8E-12 94.9 11.1 124 38-167 55-183 (445)
36 cd01036 ClC_euk Chloride chann 98.6 8.5E-08 1.8E-12 96.3 8.5 124 38-167 64-202 (416)
37 cd01033 ClC_like Putative ClC 98.6 2.3E-07 5.1E-12 92.3 11.1 125 38-172 64-193 (388)
38 cd01034 EriC_like ClC chloride 98.6 3.6E-07 7.8E-12 91.0 11.7 122 38-167 53-182 (390)
39 PRK07807 inosine 5-monophospha 98.5 1.2E-07 2.6E-12 96.6 5.5 105 191-297 85-207 (479)
40 cd04597 CBS_pair_DRTGG_assoc2 98.4 1.2E-06 2.7E-11 71.6 7.6 41 195-235 58-98 (113)
41 cd04608 CBS_pair_PALP_assoc Th 98.3 7.1E-07 1.5E-11 74.0 4.7 92 203-294 2-124 (124)
42 TIGR01137 cysta_beta cystathio 98.3 1E-06 2.2E-11 89.2 6.5 123 172-294 311-453 (454)
43 cd03683 ClC_1_like ClC-1-like 98.3 1.7E-06 3.7E-11 87.3 7.6 126 38-167 72-203 (426)
44 PRK03655 putative ion channel 98.2 9.5E-06 2.1E-10 81.5 11.9 99 64-168 100-204 (414)
45 cd04603 CBS_pair_KefB_assoc Th 98.2 2.7E-06 5.8E-11 68.6 6.2 56 194-292 55-110 (111)
46 TIGR01303 IMP_DH_rel_1 IMP deh 98.2 1.9E-06 4.1E-11 87.9 6.0 106 192-297 85-205 (475)
47 cd04619 CBS_pair_6 The CBS dom 98.2 3.3E-06 7.1E-11 68.4 6.4 56 194-292 58-113 (114)
48 TIGR00400 mgtE Mg2+ transporte 98.0 8.6E-06 1.9E-10 82.7 6.9 104 193-298 129-255 (449)
49 PRK07107 inosine 5-monophospha 98.0 6.8E-06 1.5E-10 84.3 6.2 122 173-294 69-219 (502)
50 cd04600 CBS_pair_HPP_assoc Thi 98.0 9.2E-06 2E-10 66.2 5.8 58 193-293 67-124 (124)
51 cd04620 CBS_pair_7 The CBS dom 98.0 1.1E-05 2.3E-10 65.0 5.7 56 194-292 57-114 (115)
52 cd04617 CBS_pair_4 The CBS dom 98.0 1.1E-05 2.5E-10 65.6 5.8 42 194-235 57-100 (118)
53 TIGR03520 GldE gliding motilit 98.0 0.00019 4.1E-09 72.1 15.2 62 192-295 188-251 (408)
54 cd04607 CBS_pair_NTP_transfera 98.0 1.7E-05 3.6E-10 63.8 6.3 41 195-235 58-98 (113)
55 cd04606 CBS_pair_Mg_transporte 98.0 1.5E-05 3.3E-10 63.7 6.0 58 194-294 52-109 (109)
56 cd04615 CBS_pair_2 The CBS dom 97.9 2.8E-05 6E-10 62.3 6.5 57 193-292 56-112 (113)
57 cd04625 CBS_pair_12 The CBS do 97.9 2.8E-05 6.1E-10 62.1 6.2 55 194-292 57-111 (112)
58 cd04635 CBS_pair_22 The CBS do 97.9 2.3E-05 4.9E-10 63.7 5.7 57 193-292 65-121 (122)
59 cd04641 CBS_pair_28 The CBS do 97.9 3.2E-05 6.9E-10 63.0 6.5 54 196-292 66-119 (120)
60 cd04618 CBS_pair_5 The CBS dom 97.9 1.5E-05 3.3E-10 63.4 4.4 71 180-292 26-97 (98)
61 cd04585 CBS_pair_ACT_assoc2 Th 97.9 3.2E-05 6.8E-10 62.4 6.4 57 193-292 65-121 (122)
62 cd04596 CBS_pair_DRTGG_assoc T 97.9 2.7E-05 5.8E-10 62.1 5.8 56 194-292 52-107 (108)
63 cd04627 CBS_pair_14 The CBS do 97.9 3.4E-05 7.3E-10 63.1 6.5 40 196-235 69-108 (123)
64 cd04587 CBS_pair_CAP-ED_DUF294 97.9 2.4E-05 5.2E-10 62.5 5.1 55 195-292 58-112 (113)
65 PRK05567 inosine 5'-monophosph 97.8 2E-05 4.3E-10 80.9 5.6 100 195-295 87-205 (486)
66 cd04610 CBS_pair_ParBc_assoc T 97.8 3.8E-05 8.2E-10 60.8 6.0 55 195-292 52-106 (107)
67 TIGR01302 IMP_dehydrog inosine 97.8 2E-05 4.4E-10 80.0 5.4 102 194-296 79-202 (450)
68 cd04604 CBS_pair_KpsF_GutQ_ass 97.8 4.5E-05 9.6E-10 61.0 6.2 55 195-292 59-113 (114)
69 cd04611 CBS_pair_PAS_GGDEF_DUF 97.8 5E-05 1.1E-09 60.4 6.4 57 193-292 54-110 (111)
70 cd04630 CBS_pair_17 The CBS do 97.8 4.2E-05 9.1E-10 61.6 6.0 41 194-234 59-99 (114)
71 cd04618 CBS_pair_5 The CBS dom 97.8 6.3E-05 1.4E-09 59.8 6.9 50 204-295 2-51 (98)
72 cd04602 CBS_pair_IMPDH_2 This 97.8 4.6E-05 1E-09 61.5 6.2 55 195-292 57-113 (114)
73 cd04583 CBS_pair_ABC_OpuCA_ass 97.8 4.7E-05 1E-09 60.3 6.2 55 195-292 54-108 (109)
74 cd04586 CBS_pair_BON_assoc Thi 97.8 3.2E-05 6.9E-10 64.4 5.3 55 194-292 80-134 (135)
75 PRK14869 putative manganese-de 97.8 3E-05 6.5E-10 80.5 6.2 80 176-298 221-307 (546)
76 cd04601 CBS_pair_IMPDH This cd 97.8 4.8E-05 1.1E-09 60.3 6.0 56 194-292 53-109 (110)
77 cd04803 CBS_pair_15 The CBS do 97.8 6E-05 1.3E-09 61.2 6.6 57 193-292 65-121 (122)
78 cd04641 CBS_pair_28 The CBS do 97.8 8.1E-05 1.8E-09 60.6 7.3 52 203-297 1-52 (120)
79 cd04593 CBS_pair_EriC_assoc_ba 97.8 5.2E-05 1.1E-09 61.1 6.1 59 194-293 57-115 (115)
80 cd04639 CBS_pair_26 The CBS do 97.8 4.7E-05 1E-09 60.7 5.8 41 195-235 56-96 (111)
81 cd04582 CBS_pair_ABC_OpuCA_ass 97.8 6.6E-05 1.4E-09 59.3 6.5 54 196-292 52-105 (106)
82 cd04622 CBS_pair_9 The CBS dom 97.8 4.8E-05 1E-09 60.8 5.7 55 195-292 58-112 (113)
83 cd04588 CBS_pair_CAP-ED_DUF294 97.8 6E-05 1.3E-09 60.0 6.2 55 195-292 55-109 (110)
84 cd04631 CBS_pair_18 The CBS do 97.8 5.3E-05 1.2E-09 61.7 5.8 56 194-292 69-124 (125)
85 cd04613 CBS_pair_SpoIVFB_EriC_ 97.7 6E-05 1.3E-09 60.1 5.8 56 194-292 57-113 (114)
86 COG0517 FOG: CBS domain [Gener 97.7 6.7E-05 1.4E-09 60.2 6.1 40 196-235 63-103 (117)
87 cd04621 CBS_pair_8 The CBS dom 97.7 7.6E-05 1.6E-09 62.8 6.6 41 194-234 80-120 (135)
88 cd04595 CBS_pair_DHH_polyA_Pol 97.7 8.6E-05 1.9E-09 59.2 6.6 40 194-233 55-94 (110)
89 cd04802 CBS_pair_3 The CBS dom 97.7 8.3E-05 1.8E-09 59.4 6.5 41 194-234 57-97 (112)
90 PLN02274 inosine-5'-monophosph 97.7 7.8E-05 1.7E-09 76.7 7.5 60 194-296 162-223 (505)
91 cd04643 CBS_pair_30 The CBS do 97.7 6.8E-05 1.5E-09 60.2 5.5 54 194-292 62-115 (116)
92 cd04614 CBS_pair_1 The CBS dom 97.7 9.7E-05 2.1E-09 58.2 6.2 58 193-293 38-96 (96)
93 cd04640 CBS_pair_27 The CBS do 97.7 6.6E-05 1.4E-09 61.8 5.4 58 193-292 62-125 (126)
94 cd04624 CBS_pair_11 The CBS do 97.7 0.0001 2.2E-09 58.9 6.3 56 194-292 56-111 (112)
95 cd04632 CBS_pair_19 The CBS do 97.7 8.6E-05 1.9E-09 61.0 6.0 58 194-292 70-127 (128)
96 cd04605 CBS_pair_MET2_assoc Th 97.7 0.00012 2.6E-09 58.3 6.4 54 196-292 56-109 (110)
97 PRK14869 putative manganese-de 97.7 9.9E-05 2.1E-09 76.7 7.5 60 194-296 67-126 (546)
98 COG2905 Predicted signal-trans 97.7 6.5E-05 1.4E-09 76.4 5.9 105 192-296 146-271 (610)
99 cd04594 CBS_pair_EriC_assoc_ar 97.7 9.9E-05 2.1E-09 58.6 5.8 38 196-233 51-88 (104)
100 smart00116 CBS Domain in cysta 97.6 0.00018 3.8E-09 47.6 6.1 47 205-294 2-48 (49)
101 cd04642 CBS_pair_29 The CBS do 97.6 0.00013 2.8E-09 60.0 6.5 53 197-292 73-125 (126)
102 cd04623 CBS_pair_10 The CBS do 97.6 0.00017 3.6E-09 57.4 6.8 41 194-234 58-98 (113)
103 cd04591 CBS_pair_EriC_assoc_eu 97.6 0.00011 2.5E-09 58.8 5.6 49 200-292 56-104 (105)
104 cd04590 CBS_pair_CorC_HlyC_ass 97.6 0.00013 2.9E-09 58.1 6.0 54 195-292 57-110 (111)
105 cd04612 CBS_pair_SpoIVFB_EriC_ 97.6 0.00017 3.7E-09 57.3 6.5 55 195-292 56-110 (111)
106 cd04637 CBS_pair_24 The CBS do 97.6 0.00015 3.2E-09 58.9 6.2 55 195-292 67-121 (122)
107 cd04589 CBS_pair_CAP-ED_DUF294 97.6 0.00018 4E-09 57.3 6.6 41 194-234 56-96 (111)
108 cd04629 CBS_pair_16 The CBS do 97.6 0.00013 2.7E-09 58.4 5.5 41 194-234 59-99 (114)
109 PRK11573 hypothetical protein; 97.6 0.002 4.4E-08 64.8 15.3 62 192-295 184-247 (413)
110 PRK15094 magnesium/cobalt effl 97.6 0.00019 4.1E-09 68.9 7.5 62 192-295 64-127 (292)
111 cd04801 CBS_pair_M50_like This 97.6 0.00012 2.5E-09 58.9 4.9 42 194-235 56-99 (114)
112 cd04800 CBS_pair_CAP-ED_DUF294 97.6 0.00025 5.5E-09 56.4 6.8 41 194-234 56-96 (111)
113 cd04636 CBS_pair_23 The CBS do 97.5 0.00023 5E-09 59.0 6.7 40 195-234 78-117 (132)
114 cd04626 CBS_pair_13 The CBS do 97.5 0.00021 4.5E-09 57.0 6.1 41 194-234 56-96 (111)
115 cd04592 CBS_pair_EriC_assoc_eu 97.5 0.00035 7.6E-09 58.9 7.6 51 204-297 2-52 (133)
116 cd04599 CBS_pair_GGDEF_assoc2 97.5 0.00026 5.7E-09 55.6 6.4 40 195-234 51-90 (105)
117 cd04633 CBS_pair_20 The CBS do 97.5 0.0002 4.4E-09 57.9 5.9 42 193-234 65-106 (121)
118 TIGR00393 kpsF KpsF/GutQ famil 97.5 0.00018 3.9E-09 67.5 6.0 59 194-295 154-213 (268)
119 cd04584 CBS_pair_ACT_assoc Thi 97.4 0.00028 6.1E-09 57.0 5.9 42 193-234 65-106 (121)
120 cd04605 CBS_pair_MET2_assoc Th 97.4 0.00058 1.3E-08 54.2 7.5 51 203-296 2-52 (110)
121 cd04632 CBS_pair_19 The CBS do 97.4 0.00054 1.2E-08 56.2 7.5 49 204-295 2-50 (128)
122 cd04613 CBS_pair_SpoIVFB_EriC_ 97.4 0.00047 1E-08 54.8 6.9 51 203-296 1-51 (114)
123 cd04623 CBS_pair_10 The CBS do 97.4 0.00061 1.3E-08 54.1 7.3 50 204-296 2-51 (113)
124 PTZ00314 inosine-5'-monophosph 97.4 0.00024 5.1E-09 73.1 6.0 59 194-295 158-218 (495)
125 cd04609 CBS_pair_PALP_assoc2 T 97.4 0.00035 7.5E-09 55.2 5.8 54 194-292 56-109 (110)
126 cd04600 CBS_pair_HPP_assoc Thi 97.4 0.00057 1.2E-08 55.5 6.8 51 203-296 2-52 (124)
127 cd02205 CBS_pair The CBS domai 97.4 0.00046 1E-08 53.9 6.0 53 197-292 60-112 (113)
128 cd04586 CBS_pair_BON_assoc Thi 97.3 0.00055 1.2E-08 56.9 6.6 50 203-295 2-51 (135)
129 cd04624 CBS_pair_11 The CBS do 97.3 0.00084 1.8E-08 53.4 7.3 50 204-296 2-51 (112)
130 cd04619 CBS_pair_6 The CBS dom 97.3 0.0009 1.9E-08 53.9 7.3 49 205-296 3-51 (114)
131 cd04614 CBS_pair_1 The CBS dom 97.3 0.00069 1.5E-08 53.3 6.4 49 203-294 1-49 (96)
132 cd04631 CBS_pair_18 The CBS do 97.3 0.00081 1.8E-08 54.7 7.0 52 203-296 1-52 (125)
133 cd04598 CBS_pair_GGDEF_assoc T 97.3 0.00066 1.4E-08 54.7 6.3 56 194-292 60-118 (119)
134 cd04639 CBS_pair_26 The CBS do 97.3 0.0009 2E-08 53.2 6.7 50 204-296 2-51 (111)
135 cd04638 CBS_pair_25 The CBS do 97.2 0.00074 1.6E-08 53.4 5.9 39 196-234 53-91 (106)
136 cd04803 CBS_pair_15 The CBS do 97.2 0.00088 1.9E-08 54.2 6.5 50 204-296 2-51 (122)
137 COG2239 MgtE Mg/Co/Ni transpor 97.2 0.00047 1E-08 69.8 5.4 105 194-298 131-256 (451)
138 cd04636 CBS_pair_23 The CBS do 97.2 0.00098 2.1E-08 55.1 6.2 50 204-296 2-51 (132)
139 cd04593 CBS_pair_EriC_assoc_ba 97.2 0.0015 3.2E-08 52.4 7.1 50 204-296 2-51 (115)
140 cd02205 CBS_pair The CBS domai 97.2 0.0017 3.7E-08 50.6 7.3 51 204-297 2-52 (113)
141 PRK15094 magnesium/cobalt effl 97.2 0.00081 1.8E-08 64.6 6.4 61 195-299 133-193 (292)
142 cd04801 CBS_pair_M50_like This 97.2 0.0014 3E-08 52.5 6.9 50 203-295 1-51 (114)
143 cd04635 CBS_pair_22 The CBS do 97.1 0.001 2.2E-08 53.8 6.0 48 203-293 1-48 (122)
144 cd04643 CBS_pair_30 The CBS do 97.1 0.0016 3.4E-08 52.1 7.0 49 204-295 2-50 (116)
145 TIGR01186 proV glycine betaine 97.1 0.001 2.3E-08 65.8 7.1 59 196-298 303-361 (363)
146 cd04617 CBS_pair_4 The CBS dom 97.1 0.0019 4E-08 52.3 7.4 49 204-295 2-50 (118)
147 cd04582 CBS_pair_ABC_OpuCA_ass 97.1 0.0015 3.3E-08 51.4 6.7 48 204-294 2-49 (106)
148 cd04642 CBS_pair_29 The CBS do 97.1 0.0012 2.7E-08 54.1 6.2 49 204-295 2-50 (126)
149 cd04626 CBS_pair_13 The CBS do 97.1 0.0018 3.8E-08 51.6 6.9 49 204-295 2-50 (111)
150 cd04634 CBS_pair_21 The CBS do 97.1 0.0014 3.1E-08 55.3 6.6 41 194-234 88-128 (143)
151 cd04630 CBS_pair_17 The CBS do 97.1 0.0026 5.7E-08 50.9 7.7 50 204-295 2-51 (114)
152 cd04627 CBS_pair_14 The CBS do 97.1 0.0023 4.9E-08 52.1 7.4 51 204-296 2-52 (123)
153 cd04629 CBS_pair_16 The CBS do 97.0 0.0019 4E-08 51.5 6.5 50 204-296 2-51 (114)
154 cd04621 CBS_pair_8 The CBS dom 97.0 0.0018 3.8E-08 54.4 6.6 49 204-295 2-50 (135)
155 cd04583 CBS_pair_ABC_OpuCA_ass 97.0 0.0027 5.8E-08 50.0 7.3 50 203-295 2-51 (109)
156 cd04596 CBS_pair_DRTGG_assoc T 97.0 0.0021 4.5E-08 51.0 6.5 48 203-293 2-49 (108)
157 cd04615 CBS_pair_2 The CBS dom 97.0 0.0032 7E-08 50.1 7.4 47 205-294 3-49 (113)
158 cd04591 CBS_pair_EriC_assoc_eu 97.0 0.0027 5.8E-08 50.7 6.8 53 204-296 3-55 (105)
159 cd04590 CBS_pair_CorC_HlyC_ass 97.0 0.0037 8.1E-08 49.5 7.6 51 204-296 2-52 (111)
160 cd04637 CBS_pair_24 The CBS do 97.0 0.0037 7.9E-08 50.6 7.6 48 204-295 2-49 (122)
161 COG0517 FOG: CBS domain [Gener 96.9 0.0041 8.9E-08 49.6 7.7 56 198-297 2-57 (117)
162 cd04603 CBS_pair_KefB_assoc Th 96.9 0.0032 7E-08 50.4 7.0 47 204-293 2-48 (111)
163 cd04634 CBS_pair_21 The CBS do 96.9 0.0031 6.8E-08 53.2 7.0 51 203-297 1-51 (143)
164 cd04640 CBS_pair_27 The CBS do 96.8 0.0041 8.8E-08 51.0 6.8 46 204-292 2-47 (126)
165 cd04595 CBS_pair_DHH_polyA_Pol 96.8 0.006 1.3E-07 48.3 7.5 50 203-296 2-51 (110)
166 cd04588 CBS_pair_CAP-ED_DUF294 96.8 0.0065 1.4E-07 48.1 7.6 50 203-296 1-50 (110)
167 cd04584 CBS_pair_ACT_assoc Thi 96.8 0.0045 9.7E-08 49.8 6.7 49 204-295 2-50 (121)
168 cd04612 CBS_pair_SpoIVFB_EriC_ 96.7 0.0057 1.2E-07 48.3 7.0 50 203-296 1-50 (111)
169 cd04604 CBS_pair_KpsF_GutQ_ass 96.7 0.0043 9.2E-08 49.3 6.2 50 204-296 3-52 (114)
170 COG1253 TlyC Hemolysins and re 96.7 0.0047 1E-07 62.5 7.7 64 192-297 203-268 (429)
171 TIGR00393 kpsF KpsF/GutQ famil 96.7 0.003 6.5E-08 59.2 5.8 42 194-235 219-260 (268)
172 cd04611 CBS_pair_PAS_GGDEF_DUF 96.6 0.0083 1.8E-07 47.3 7.4 49 204-296 2-50 (111)
173 cd04609 CBS_pair_PALP_assoc2 T 96.6 0.0082 1.8E-07 47.2 7.0 49 204-296 2-50 (110)
174 cd04622 CBS_pair_9 The CBS dom 96.6 0.0078 1.7E-07 47.8 6.8 32 203-234 1-32 (113)
175 PTZ00314 inosine-5'-monophosph 96.6 0.0049 1.1E-07 63.5 6.9 40 196-235 97-136 (495)
176 cd04585 CBS_pair_ACT_assoc2 Th 96.6 0.0078 1.7E-07 48.2 6.8 48 204-295 2-49 (122)
177 KOG2550|consensus 96.6 0.0026 5.6E-08 62.7 4.5 60 193-295 169-228 (503)
178 cd04601 CBS_pair_IMPDH This cd 96.6 0.0064 1.4E-07 47.9 6.1 33 203-235 2-34 (110)
179 cd04599 CBS_pair_GGDEF_assoc2 96.6 0.008 1.7E-07 47.0 6.7 46 204-293 2-47 (105)
180 cd04607 CBS_pair_NTP_transfera 96.6 0.0092 2E-07 47.6 7.1 48 205-295 4-51 (113)
181 cd04802 CBS_pair_3 The CBS dom 96.5 0.013 2.7E-07 46.5 7.7 49 203-295 1-49 (112)
182 PRK10070 glycine betaine trans 96.5 0.0058 1.3E-07 61.3 6.9 58 196-297 338-395 (400)
183 cd04800 CBS_pair_CAP-ED_DUF294 96.5 0.012 2.6E-07 46.5 7.4 49 203-295 1-49 (111)
184 cd04633 CBS_pair_20 The CBS do 96.4 0.012 2.7E-07 47.3 7.0 48 204-295 2-49 (121)
185 PLN02274 inosine-5'-monophosph 96.3 0.0089 1.9E-07 61.7 7.1 38 198-235 103-140 (505)
186 cd04602 CBS_pair_IMPDH_2 This 96.3 0.013 2.8E-07 47.0 6.7 50 204-293 3-52 (114)
187 TIGR03520 GldE gliding motilit 96.3 0.0098 2.1E-07 59.8 7.1 60 196-299 256-315 (408)
188 cd04638 CBS_pair_25 The CBS do 96.3 0.016 3.4E-07 45.6 6.9 47 204-293 2-48 (106)
189 cd04598 CBS_pair_GGDEF_assoc T 96.2 0.017 3.7E-07 46.3 6.7 48 204-295 2-50 (119)
190 cd04587 CBS_pair_CAP-ED_DUF294 96.2 0.024 5.1E-07 44.9 7.4 47 204-294 2-48 (113)
191 cd04620 CBS_pair_7 The CBS dom 96.1 0.02 4.3E-07 45.7 6.8 49 204-296 2-51 (115)
192 cd04606 CBS_pair_Mg_transporte 96.0 0.012 2.6E-07 46.6 4.9 42 208-292 2-48 (109)
193 cd04589 CBS_pair_CAP-ED_DUF294 96.0 0.039 8.4E-07 43.7 7.8 48 204-295 2-49 (111)
194 cd04625 CBS_pair_12 The CBS do 95.8 0.045 9.8E-07 43.3 7.5 48 204-295 2-49 (112)
195 cd04594 CBS_pair_EriC_assoc_ar 95.5 0.053 1.1E-06 42.6 6.9 29 206-234 4-32 (104)
196 cd04610 CBS_pair_ParBc_assoc T 95.5 0.058 1.3E-06 42.1 6.9 32 203-234 2-33 (107)
197 COG4535 CorC Putative Mg2+ and 95.3 0.0092 2E-07 55.1 1.8 62 193-296 65-128 (293)
198 COG4536 CorB Putative Mg2+ and 94.7 0.034 7.3E-07 54.6 3.9 44 192-235 197-242 (423)
199 COG3448 CBS-domain-containing 94.6 0.039 8.5E-07 52.6 4.0 46 193-238 313-358 (382)
200 KOG0474|consensus 94.5 0.0082 1.8E-07 62.1 -0.7 100 64-165 189-301 (762)
201 TIGR03415 ABC_choXWV_ATP choli 94.0 0.12 2.7E-06 51.5 6.5 55 196-296 327-381 (382)
202 PRK10892 D-arabinose 5-phospha 93.6 0.099 2.1E-06 50.6 4.8 42 194-235 268-309 (326)
203 cd04592 CBS_pair_EriC_assoc_eu 93.6 0.085 1.8E-06 44.3 3.8 36 200-235 83-118 (133)
204 KOG1764|consensus 92.7 0.18 3.9E-06 50.3 5.2 53 204-299 238-290 (381)
205 KOG1764|consensus 92.1 0.38 8.2E-06 48.0 6.7 51 204-297 311-361 (381)
206 TIGR00400 mgtE Mg2+ transporte 91.9 0.19 4.2E-06 51.1 4.5 45 194-238 194-238 (449)
207 COG2524 Predicted transcriptio 91.7 0.19 4.1E-06 47.1 3.7 43 193-235 232-274 (294)
208 PRK11543 gutQ D-arabinose 5-ph 91.6 0.25 5.5E-06 47.6 4.7 42 194-235 262-303 (321)
209 PRK07107 inosine 5-monophospha 91.3 0.26 5.7E-06 50.9 4.7 46 193-238 159-206 (502)
210 PRK07807 inosine 5-monophospha 90.6 0.31 6.7E-06 50.1 4.5 44 195-238 148-191 (479)
211 COG4175 ProV ABC-type proline/ 90.6 0.5 1.1E-05 46.0 5.5 53 200-296 332-384 (386)
212 KOG2550|consensus 90.5 0.21 4.6E-06 49.6 3.0 51 203-293 116-166 (503)
213 PRK11573 hypothetical protein; 90.2 0.82 1.8E-05 46.1 7.1 55 203-300 262-316 (413)
214 TIGR01303 IMP_DH_rel_1 IMP deh 90.2 0.35 7.6E-06 49.7 4.4 44 195-238 146-189 (475)
215 KOG0475|consensus 87.0 0.26 5.6E-06 51.4 1.0 101 64-166 181-284 (696)
216 COG1253 TlyC Hemolysins and re 86.3 2.2 4.7E-05 43.3 7.2 53 204-299 280-332 (429)
217 cd04608 CBS_pair_PALP_assoc Th 85.9 0.3 6.5E-06 40.0 0.7 42 194-235 58-108 (124)
218 TIGR01302 IMP_dehydrog inosine 84.5 1.3 2.7E-05 45.2 4.6 45 194-238 142-187 (450)
219 PRK05567 inosine 5'-monophosph 80.6 2.1 4.6E-05 44.1 4.5 45 194-238 146-191 (486)
220 COG2239 MgtE Mg/Co/Ni transpor 79.1 1.6 3.6E-05 44.5 3.0 46 193-238 194-239 (451)
221 COG1125 OpuBA ABC-type proline 77.8 4 8.6E-05 38.8 4.9 59 192-293 246-308 (309)
222 KOG0476|consensus 77.2 1.1 2.4E-05 47.9 1.2 82 64-146 191-275 (931)
223 COG4536 CorB Putative Mg2+ and 76.0 18 0.0004 36.0 9.0 83 198-324 268-367 (423)
224 COG3620 Predicted transcriptio 74.7 3.4 7.3E-05 36.3 3.3 44 190-235 125-168 (187)
225 COG2905 Predicted signal-trans 72.4 4.6 0.0001 42.0 4.2 44 193-236 212-255 (610)
226 KOG4267|consensus 72.3 9.7 0.00021 31.1 5.2 67 85-163 28-94 (110)
227 COG4109 Predicted transcriptio 70.3 5.5 0.00012 39.2 4.0 46 192-237 246-291 (432)
228 PRK10070 glycine betaine trans 68.2 13 0.00028 37.4 6.3 59 194-295 273-334 (400)
229 TIGR01186 proV glycine betaine 54.0 41 0.00089 33.3 6.9 53 201-296 248-300 (363)
230 KOG4112|consensus 47.5 56 0.0012 26.1 5.3 19 87-105 31-49 (101)
231 COG5336 Uncharacterized protei 44.1 53 0.0012 26.9 4.8 39 92-131 56-94 (116)
232 TIGR01137 cysta_beta cystathio 42.4 34 0.00074 34.5 4.5 38 195-235 400-437 (454)
233 COG4535 CorC Putative Mg2+ and 42.3 70 0.0015 30.1 6.0 59 196-298 134-192 (293)
234 COG3329 Predicted permease [Ge 39.3 1.9E+02 0.0042 28.2 8.6 72 83-157 70-142 (372)
235 PF05817 Ribophorin_II: Oligos 36.0 88 0.0019 33.5 6.4 35 94-128 591-625 (636)
236 PF12732 YtxH: YtxH-like prote 35.4 39 0.00084 25.3 2.7 20 84-103 1-20 (74)
237 PF14362 DUF4407: Domain of un 35.4 3.1E+02 0.0068 26.0 9.7 21 85-105 46-66 (301)
238 COG2370 HupE Hydrogenase/ureas 31.8 2.1E+02 0.0046 25.8 7.1 68 74-144 63-131 (201)
239 PF07869 DUF1656: Protein of u 31.1 63 0.0014 23.2 3.1 26 80-105 5-30 (58)
240 PF04632 FUSC: Fusaric acid re 30.2 2.8E+02 0.006 29.2 9.2 97 71-167 33-149 (650)
241 PF04982 HPP: HPP family; Int 29.7 2.9E+02 0.0062 22.8 7.3 39 128-166 67-109 (120)
242 COG3610 Uncharacterized conser 26.6 4.3E+02 0.0093 23.0 9.1 70 75-145 52-126 (156)
243 PF04226 Transgly_assoc: Trans 25.6 1.1E+02 0.0024 21.0 3.4 37 89-127 5-41 (48)
244 PF11299 DUF3100: Protein of u 25.2 1.3E+02 0.0028 28.1 4.8 48 89-137 149-199 (241)
245 PHA03054 IMV membrane protein; 23.6 3.3E+02 0.0071 20.6 5.9 25 27-51 3-34 (72)
246 PF07456 Hpre_diP_synt_I: Hept 20.2 5.7E+02 0.012 22.1 11.2 30 57-91 42-71 (148)
No 1
>KOG0474|consensus
Probab=100.00 E-value=3.5e-72 Score=556.23 Aligned_cols=306 Identities=47% Similarity=0.856 Sum_probs=282.6
Q ss_pred ccCCCccCCCCCcc-ccEEEEcCCCchhhHHHHhccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy15906 4 SIDDCRPLGEDPTE-HAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGG 82 (352)
Q Consensus 4 ~~~~c~~~~~~~~~-~~~~~~c~~g~y~~~~~l~~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG 82 (352)
++++|||||.++++ .-.+|+|++|+||++|+|||+++++++++|||++.++|...+|++|++.+++++++|||+.+|+|
T Consensus 395 ~l~~C~P~~~~~~~~~~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~~ef~~~tL~iFfv~yf~L~~~TfGi~vpsG 474 (762)
T KOG0474|consen 395 FLADCQPCPPSITEGQCPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPTNEFGILTLAIFFVLYFFLACWTFGIAVPSG 474 (762)
T ss_pred HHhcCCCCCCCcccccCccccCCCCchhHHHHHHcCCcHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhccccccc
Confidence 78999999988765 44468999999999999999999999999999988999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHH
Q psy15906 83 VFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKW 162 (352)
Q Consensus 83 ~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~ 162 (352)
+|+|++++||++||++|.++..++ +++||.||++||||++||++|||+|.+||++|+| +..+++|+|++.++|||
T Consensus 475 lFiP~iL~GAa~GRlvg~~l~~~~----~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~ 549 (762)
T KOG0474|consen 475 LFIPVILTGAAYGRLVGMLLGSYT----NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKT 549 (762)
T ss_pred chhHHHHhhHHHHHHHHHHHHHhh----ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHH
Confidence 999999999999999999998876 3899999999999999999999999999999999 67899999999999999
Q ss_pred HHhhcCCchhHHHHHHcCCCCCCCCCCCCCcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccC
Q psy15906 163 IGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSS 242 (352)
Q Consensus 163 v~~~~~~~iy~~~l~~~g~p~l~~~~~~~l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~ 242 (352)
|+|.||++|||.++++||+|+++|++++.+++++|+|+|++++++++..++++.++++|++++||+|||||+.+.
T Consensus 550 VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~----- 624 (762)
T KOG0474|consen 550 VGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPS----- 624 (762)
T ss_pred HHhhhhhhhHHHhhhccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998611
Q ss_pred CcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEEEeHHHHHHHHHhhhcccCCC--CCCCCcCHHHHhhhCC
Q psy15906 243 DGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQN--WPDDQLSSEIFHAEYP 320 (352)
Q Consensus 243 d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGiItRsdLi~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~ 320 (352)
++.++++|+|.|+||++.|+++.|.+++. .+....+...+++.|+
T Consensus 625 ---------------------------------~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~ 671 (762)
T KOG0474|consen 625 ---------------------------------NEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAK 671 (762)
T ss_pred ---------------------------------ccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhh
Confidence 12368999999999999999999987654 2221223456778899
Q ss_pred CCCCcccccCCccccCCcccccccccCCCCCC
Q psy15906 321 RYPSVNDLVVSENDRSFTVKLNLFMNTSPFSE 352 (352)
Q Consensus 321 ~~p~i~~~~~~~~~~~~~~dl~p~~n~sp~t~ 352 (352)
|.|+|+|++++++|+++|+||.||||+||||+
T Consensus 672 r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV 703 (762)
T KOG0474|consen 672 REPSIEDVHLTSEEMEMYVDLHPFMNPSPYTV 703 (762)
T ss_pred cCCchhhhhcchHhHhhccccccccCCCCccc
Confidence 99999999999999999999999999999985
No 2
>KOG0475|consensus
Probab=100.00 E-value=3.4e-41 Score=336.21 Aligned_cols=257 Identities=29% Similarity=0.509 Sum_probs=206.3
Q ss_pred CcHHHHHHHhcCCCC--ch---------hHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcC
Q psy15906 39 VPEKSVRTMLHDPKG--AF---------GVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107 (352)
Q Consensus 39 ~~~~~i~~l~~~~~~--~~---------~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p 107 (352)
++.+.++.||+++.. .- ..+.|++.+++|+++|++|+|+++|+|+|+|||++||+.||++|.++.++++
T Consensus 370 ~~~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~ 449 (696)
T KOG0475|consen 370 NMSELITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQ 449 (696)
T ss_pred hHHHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhc
Confidence 456888999986531 11 2678888899999999999999999999999999999999999999888765
Q ss_pred -------CCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhHHHHHHc
Q psy15906 108 -------EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLS 179 (352)
Q Consensus 108 -------~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~~~l~~~ 179 (352)
+..++.|++||++||||+|+|++|+|+|++||+||+||++.+++|+|+|+++|+||++.+. ++|||.++++|
T Consensus 450 ~~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~n 529 (696)
T KOG0475|consen 450 NPDFNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELN 529 (696)
T ss_pred CCCccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 3346899999999999999999999999999999999999999999999999999999986 89999999999
Q ss_pred CCCCCCCCCCCCCccccccccccc---C--eEEecC-CCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCC
Q psy15906 180 GIPLLAWDPPPLSSNITARIVKSH---P--VICLRP-LETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGST 253 (352)
Q Consensus 180 g~p~l~~~~~~~l~~i~V~dIM~~---~--vv~l~~-~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~ 253 (352)
|+|+++.+++.. +.-..++|.+ + ..+++. .++++|+..+++++++++||||-++
T Consensus 530 g~P~l~~k~e~~--~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~------------------ 589 (696)
T KOG0475|consen 530 GYPFLDSKSEFS--STLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE------------------ 589 (696)
T ss_pred CCCCcccccccc--cchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEcc------------------
Confidence 999997665443 4445555542 2 444554 4999999999999999999999765
Q ss_pred CcccCCCCCcccCCCCCCCCcCCCCCeEEEEEeHHHHHHHHHhhhcccCCCCCCCCcCHHHHhhhCCCCCCcccccCCcc
Q psy15906 254 DSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSEN 333 (352)
Q Consensus 254 ~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGiItRsdLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~ 333 (352)
++++++|+|+|+|+..++....-..+...+. . . .|.+.-|..+ .
T Consensus 590 -----------------------~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~-~--~-~f~~~~~~~~---------~ 633 (696)
T KOG0475|consen 590 -----------------------DSQRLVGFVLRRNLFLAILNARKIQSFIVTT-S--I-YFNDPSPSAV---------A 633 (696)
T ss_pred -----------------------ccceeEEEEchHHHHHHHhhhccccccceec-c--c-ccCCCCcccc---------C
Confidence 1479999999999999987543211110111 1 1 3333322222 3
Q ss_pred ccCCcccccccccCCCCC
Q psy15906 334 DRSFTVKLNLFMNTSPFS 351 (352)
Q Consensus 334 ~~~~~~dl~p~~n~sp~t 351 (352)
+.+..+||+.|||.+|+|
T Consensus 634 ~~~~~~~lk~il~~tp~t 651 (696)
T KOG0475|consen 634 GIPSRLDLKDILDMTPFT 651 (696)
T ss_pred CCCCCcCceeeccCCccc
Confidence 577889999999999997
No 3
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=2.5e-37 Score=320.48 Aligned_cols=252 Identities=20% Similarity=0.269 Sum_probs=211.8
Q ss_pred ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906 37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK 116 (352)
Q Consensus 37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~ 116 (352)
.|+|++.++.++++ .+.+..++.++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++.++|... ..|+.
T Consensus 296 ~g~G~~~i~~~~~~---~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~-~~~~~ 371 (574)
T PRK01862 296 WGNGYSVVNTILHA---PWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGHT-SAPFA 371 (574)
T ss_pred hcCCHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCcc-cchHH
Confidence 38999999999976 356677888889999999999999999999999999999999999999998877542 46788
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhHHHHHHcCCCCCCCCCCCCCccc
Q psy15906 117 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLSGIPLLAWDPPPLSSNI 195 (352)
Q Consensus 117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~~~l~~~g~p~l~~~~~~~l~~i 195 (352)
|+++||||+++|++|+|+|++++++|+|++++.++|+|+++++|+++++.++ +|+|+.++++++.+ .+...++.+
T Consensus 372 ~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~~----~~~~~L~~~ 447 (574)
T PRK01862 372 YAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQDE----AERERLRTT 447 (574)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhcccc----chhhHHhhC
Confidence 9999999999999999999999999999999999999999999999999885 99999999988643 245567889
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--ccC--CCCCCcccCCCCCcccCCC
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--QSS--AGSTDSHKGDTSHKRDSSH 268 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~~~--~~~~~~~~~m~~~~~~~~~ 268 (352)
+|+|+|++++.+++++++++|+.+.+.+++++.+||+|++++. ++.+|... ... ..+.++.++|.+++++++.
T Consensus 448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~~~~~v~~ 527 (574)
T PRK01862 448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAHTPFPLLTP 527 (574)
T ss_pred cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhccCCCeeECC
Confidence 9999999999999999999999999999999999999986443 23333221 011 1235688899999888875
Q ss_pred CC------------CCCcCC---CC--CeEEEEEeHHHHHHHHHh
Q psy15906 269 KG------------DASRKD---SP--GRLVGLILRSQLIILIKH 296 (352)
Q Consensus 269 ~~------------~~~~l~---~~--g~lvGiItRsdLi~~L~~ 296 (352)
+. +.+.+| ++ ++++|+|||+|+++++.+
T Consensus 528 d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 528 DMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 43 344444 23 589999999999999865
No 4
>KOG0476|consensus
Probab=100.00 E-value=8.5e-36 Score=301.59 Aligned_cols=203 Identities=30% Similarity=0.528 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCC-------cCChhHHHHHHHHHHHHhh
Q psy15906 57 VFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEAT-------WIDPGKYALIGAAAQLGGV 129 (352)
Q Consensus 57 ~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~-------~~~~~~~alvG~aa~l~g~ 129 (352)
+.+|++|+++||++++++..+.+|+|+|+|.+++||++||++|+.+..++|.+. .+.||.||++|||||-|++
T Consensus 442 f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAfsGaV 521 (931)
T KOG0476|consen 442 FGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAFSGAV 521 (931)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCCccCccccchhhhhhhhhhccce
Confidence 568999999999999999999999999999999999999999999998888542 4789999999999988888
Q ss_pred hchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCCchhHHHHHHcCCCCCCCCCCCC--CcccccccccccCeEE
Q psy15906 130 VRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPL--SSNITARIVKSHPVIC 207 (352)
Q Consensus 130 ~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~~~iy~~~l~~~g~p~l~~~~~~~--l~~i~V~dIM~~~vv~ 207 (352)
++ ++|.+||+||+||+...++|+|+|+++|..|+..++.||||..|+.|++|||++.++.. .+.+.|+|+|.+|+.+
T Consensus 522 TH-TvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~dv~y 600 (931)
T KOG0476|consen 522 TH-TVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTDVKY 600 (931)
T ss_pred ee-eeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeecccccee
Confidence 86 89999999999999999999999999999999999999999999999999999887654 5678999999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEEEeH
Q psy15906 208 LRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILR 287 (352)
Q Consensus 208 l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGiItR 287 (352)
+..+.|.+|+.+.+..++.+.||+||+. ++..|+|.|.|
T Consensus 601 I~k~~Ty~elre~l~~~~lR~~PlV~s~-----------------------------------------esmiLlGSV~R 639 (931)
T KOG0476|consen 601 ITKDTTYRELREALQTTTLRSFPLVESK-----------------------------------------ESMILLGSVAR 639 (931)
T ss_pred eeccCcHHHHHHHHHhCccceeccccCc-----------------------------------------ccceeeehhHH
Confidence 9999999999999998889999999975 24689999999
Q ss_pred HHHHHHHHhhhccc
Q psy15906 288 SQLIILIKHKIYKE 301 (352)
Q Consensus 288 sdLi~~L~~~~~~~ 301 (352)
++|..+|++++-.+
T Consensus 640 ~~L~~ll~~~ig~~ 653 (931)
T KOG0476|consen 640 RYLTALLQRHIGPE 653 (931)
T ss_pred HHHHHHHHhhcCcc
Confidence 99999999876543
No 5
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.95 E-value=1.4e-27 Score=241.67 Aligned_cols=128 Identities=55% Similarity=1.022 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHhhhchhHHHHH
Q psy15906 59 SLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTI 138 (352)
Q Consensus 59 ~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~v 138 (352)
.+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.+++.. ..+|+.||++||||+++|++|+|+|+++
T Consensus 335 ~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~-~~~~~~~aliGmaa~lag~~raPlt~iv 413 (466)
T cd03685 335 TLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFT-SIDPGLYALLGAAAFLGGVMRMTVSLTV 413 (466)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHcccc-CCCchHHHHHHHHHHHhHHhhhhHHHHH
Confidence 456667889999999999999999999999999999999999999887643 3789999999999999999999999999
Q ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHhhcCCchhHHHHHHcCCCCCCCC
Q psy15906 139 ILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWD 187 (352)
Q Consensus 139 i~~ElTg~~~~~lp~m~~~~~a~~v~~~~~~~iy~~~l~~~g~p~l~~~ 187 (352)
|++|+||++++++|+|+++++|+++++.+++|+||.++++||+||+++.
T Consensus 414 iv~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 414 ILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred HhhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence 9999999999999999999999999999999999999999999999864
No 6
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.95 E-value=1.1e-27 Score=241.12 Aligned_cols=147 Identities=37% Similarity=0.803 Sum_probs=130.4
Q ss_pred cCcHHHHHHHhcCCC-----------------Cc-hhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHH
Q psy15906 38 QVPEKSVRTMLHDPK-----------------GA-FGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFS 99 (352)
Q Consensus 38 ~~~~~~i~~l~~~~~-----------------~~-~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g 99 (352)
++|++.++.+|++.. .. ..++.+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|
T Consensus 267 ~~g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g 346 (445)
T cd03684 267 LDMTELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVG 346 (445)
T ss_pred cchhhHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHH
Confidence 678889999886421 11 245678888999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCC----------CcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhh
Q psy15906 100 LFLQSIF---PEA----------TWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166 (352)
Q Consensus 100 ~~~~~~~---p~~----------~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~ 166 (352)
.+++.+. |+. ...+|+.||++||||+++|++|+|+|++++++|+||++++++|+|+++++||++++.
T Consensus 347 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~ 426 (445)
T cd03684 347 ILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADA 426 (445)
T ss_pred HHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHHH
Confidence 9998763 321 126789999999999999999999999999999999999999999999999999999
Q ss_pred cC-CchhHHHHHHcCCCCC
Q psy15906 167 FT-EGLYDIHIQLSGIPLL 184 (352)
Q Consensus 167 ~~-~~iy~~~l~~~g~p~l 184 (352)
++ +|+||.++++||+||+
T Consensus 427 ~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 427 IGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred hCCCCHHHHHHHhcCCCCC
Confidence 96 8999999999999986
No 7
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.93 E-value=4.1e-26 Score=228.68 Aligned_cols=129 Identities=33% Similarity=0.639 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCC------CCcCChhHHHHHHHHHHHHhhh
Q psy15906 57 VFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPE------ATWIDPGKYALIGAAAQLGGVV 130 (352)
Q Consensus 57 ~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~------~~~~~~~~~alvG~aa~l~g~~ 130 (352)
+..++++++.|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.++|+ ....+|+.||++||||+++|++
T Consensus 292 ~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ 371 (426)
T cd03683 292 FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVT 371 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHH
Confidence 4456677889999999999999999999999999999999999999988872 1236789999999999999999
Q ss_pred chhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCCchhHHHHHHcCCCCCCC
Q psy15906 131 RMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAW 186 (352)
Q Consensus 131 r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~~~iy~~~l~~~g~p~l~~ 186 (352)
|+|.++ ++++|+||++++++|+|+++++|+++++.+++|+||.+++.||+||+++
T Consensus 372 ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 372 HTVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFLQPSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred hHHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence 987765 6999999999999999999999999999999999999999999999973
No 8
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.93 E-value=3.2e-25 Score=220.80 Aligned_cols=137 Identities=29% Similarity=0.508 Sum_probs=126.9
Q ss_pred ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906 37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK 116 (352)
Q Consensus 37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~ 116 (352)
+++|++.++.++++ ++++..++.+++.|+++|++|+|+|.+||+|+|++++||++|+++|.+++.++|.. ..+|+.
T Consensus 265 ~g~G~~~i~~~~~~---~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~-~~~~~~ 340 (402)
T cd01031 265 LGGGHGLILSLAGG---NFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPIP-ISAPAT 340 (402)
T ss_pred hCCHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccHHH
Confidence 37899999998875 46777888899999999999999999999999999999999999999999888754 378999
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhc-CCchhHHHHH
Q psy15906 117 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF-TEGLYDIHIQ 177 (352)
Q Consensus 117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~-~~~iy~~~l~ 177 (352)
|+++||||+++|++|+|++++++++|+||++++++|+|+++++|+++++.+ ++|+||.+++
T Consensus 341 ~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l~ 402 (402)
T cd01031 341 FAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALLE 402 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHhC
Confidence 999999999999999999999999999999999999999999999999998 5999999864
No 9
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.93 E-value=5.8e-25 Score=219.81 Aligned_cols=139 Identities=22% Similarity=0.280 Sum_probs=125.7
Q ss_pred ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906 37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK 116 (352)
Q Consensus 37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~ 116 (352)
+|+|++.++.+++. .+.+..++.+++.|+++|++|+|+|.+||+|+|++++||++|+++|.+++.++|... ..+..
T Consensus 278 ~G~G~~~i~~~~~~---~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~-~~~~~ 353 (418)
T PRK01610 278 WGNGYSVVQSFLTA---PPLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPDGE-EITLL 353 (418)
T ss_pred hCCcHHHHHHHHcC---ChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCcc-cchHH
Confidence 48999999998875 345667777889999999999999999999999999999999999999998777532 44789
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhc-CCchhHHHHHHc
Q psy15906 117 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF-TEGLYDIHIQLS 179 (352)
Q Consensus 117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~-~~~iy~~~l~~~ 179 (352)
|+++||||++++++|+|+|++++++|+||++++++|+|+++++|+++++.+ ++++|+.++..+
T Consensus 354 ~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 354 LGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCchHHHHhcc
Confidence 999999999999999999999999999999999999999999999999988 599999998654
No 10
>PRK05277 chloride channel protein; Provisional
Probab=99.92 E-value=3.8e-24 Score=215.33 Aligned_cols=138 Identities=25% Similarity=0.491 Sum_probs=128.2
Q ss_pred cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906 38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY 117 (352)
Q Consensus 38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~ 117 (352)
++|++.++.++++ .+++..++.+++.|++++++|+|+|+|||+|.|++++||++|+++|.+++.++|.. ..+|..|
T Consensus 279 g~G~~~i~~~~~~---~~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~~-~~~~~~~ 354 (438)
T PRK05277 279 GGGFNLIPIALAG---NFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQY-HIEPGTF 354 (438)
T ss_pred CChHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-cccHHHH
Confidence 7889999999875 45667788889999999999999999999999999999999999999999988864 3789999
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhHHHHHHc
Q psy15906 118 ALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLS 179 (352)
Q Consensus 118 alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~~~l~~~ 179 (352)
+++||||++++++|+|+|++++++|+||+++.++|+|+++++|+++++.++ +++||.++++.
T Consensus 355 a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 355 AIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGGKPIYSALLERT 417 (438)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999995 99999999875
No 11
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.91 E-value=1.5e-24 Score=216.90 Aligned_cols=117 Identities=46% Similarity=0.842 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCC-------CcCChhHHHHHHHHHHHHhh
Q psy15906 57 VFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEA-------TWIDPGKYALIGAAAQLGGV 129 (352)
Q Consensus 57 ~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~-------~~~~~~~~alvG~aa~l~g~ 129 (352)
+..++++++.|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.++|.. ...+|+.||++||||+++|+
T Consensus 293 ~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~ 372 (416)
T cd01036 293 APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGT 372 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhh
Confidence 34567778899999999999999999999999999999999999999887732 13689999999999999999
Q ss_pred hchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCCchhH
Q psy15906 130 VRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYD 173 (352)
Q Consensus 130 ~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~~~iy~ 173 (352)
+|+|+|++++++|+||++++++|+|+++++|+++++.+++|+||
T Consensus 373 ~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~~siY~ 416 (416)
T cd01036 373 TRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFCESLYH 416 (416)
T ss_pred hcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999999999999999999999999997
No 12
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.91 E-value=6.6e-24 Score=208.17 Aligned_cols=131 Identities=34% Similarity=0.595 Sum_probs=112.2
Q ss_pred hccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChh
Q psy15906 36 WLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG 115 (352)
Q Consensus 36 ~~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~ 115 (352)
.+++|++.++.+++++...+.+..++++++.|+++|++|+|+|+|||+|+|++++||++|+++|.+++..+|+....+|+
T Consensus 225 ~~g~G~~~i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~ 304 (355)
T PF00654_consen 225 VLGSGYELIQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISSVDPG 304 (355)
T ss_dssp GSSSSTTHHHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHH
T ss_pred ccCCcHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCCCchH
Confidence 45789999999998754457889999999999999999999999999999999999999999999999998754334799
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhh
Q psy15906 116 KYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166 (352)
Q Consensus 116 ~~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~ 166 (352)
.|+++||+|++++++|+|++++++++|+||++++++|+|+++++||++++.
T Consensus 305 ~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a~~v~~~ 355 (355)
T PF00654_consen 305 VYALVGMAAFLAAVTRAPLTAIVLVLELTGDFQLLLPLLIAVAVAYLVARW 355 (355)
T ss_dssp HHHHHHTTHHHHHHCS-HHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999873
No 13
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2e-23 Score=209.95 Aligned_cols=144 Identities=28% Similarity=0.532 Sum_probs=129.5
Q ss_pred cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906 38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY 117 (352)
Q Consensus 38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~ 117 (352)
++|++.++..++.+ ..+..++.+++.|+++|.+|+|+|.|||+|+|++++||++|.++|.+++.++|.. ...+..|
T Consensus 293 g~G~~~~~~~~~~~---~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~~~-~~~~~~~ 368 (443)
T COG0038 293 GNGYGLIQLALAGE---GGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPPS-ILEPGLF 368 (443)
T ss_pred CCCccHHHHHHccC---ccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcCcc-ccchHHH
Confidence 68889999888863 2333378889999999999999999999999999999999999999999887753 2567899
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhHHHHHHcCCCCCC
Q psy15906 118 ALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLSGIPLLA 185 (352)
Q Consensus 118 alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~~~l~~~g~p~l~ 185 (352)
+++||+|++++++|+|+|++++++|+||+++.++|+|+++++||++++... +++|+..+++++.+..+
T Consensus 369 al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
T COG0038 369 ALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRGAPILR 437 (443)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcCchhhh
Confidence 999999999999999999999999999999999999999999999999874 89999999999887443
No 14
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.89 E-value=1.4e-22 Score=201.06 Aligned_cols=126 Identities=25% Similarity=0.398 Sum_probs=116.5
Q ss_pred ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906 37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK 116 (352)
Q Consensus 37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~ 116 (352)
.|+|++.++.++++ .+++..++.+++.|+++|++|+|+|.+||+|.|++++||++|+++|.+++.++|. .++..
T Consensus 261 ~G~G~~~i~~~~~~---~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~---~~~~~ 334 (388)
T cd01033 261 LGNGRALAQLAFST---TLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPP---LSIAA 334 (388)
T ss_pred hCCcHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCc---ccHHH
Confidence 47899999999986 3566777888999999999999999999999999999999999999999887764 46889
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHhhC-CchhhHHHHHHHHHHHHHHhhcC
Q psy15906 117 YALIGAAAQLGGVVRMTISLTIILIEATG-NISFGLPLMLTLITAKWIGDFFT 168 (352)
Q Consensus 117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg-~~~~~lp~m~~~~~a~~v~~~~~ 168 (352)
|+++||||++++++|+|+|++++++|+|| +++.++|+|+++++|+.+++.++
T Consensus 335 ~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~~ 387 (388)
T cd01033 335 FALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFIL 387 (388)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999 99999999999999999998764
No 15
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.87 E-value=8.2e-22 Score=195.66 Aligned_cols=125 Identities=28% Similarity=0.468 Sum_probs=111.6
Q ss_pred ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906 37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK 116 (352)
Q Consensus 37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~ 116 (352)
+|+|++.++.+++++. .. ...+++.|+++|++|+|+|+|||.|+|++++||++|++++.++. . .++..
T Consensus 265 ~G~G~~~i~~~~~~~~-~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~----~---~~~~~ 332 (390)
T cd01034 265 FGTGYLQARAALEGGG-GL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLG----S---VSQGA 332 (390)
T ss_pred ccCcHHHHHHHHhCCC-cc----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhc----C---CCchH
Confidence 4689999999887632 12 23457899999999999999999999999999999999998653 2 47899
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhH
Q psy15906 117 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYD 173 (352)
Q Consensus 117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~ 173 (352)
|+++||||++++++|+|+|++++++|+||++++++|+|+++++|+++++.++ +++||
T Consensus 333 ~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 333 LVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999985 89996
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.83 E-value=4.3e-20 Score=182.85 Aligned_cols=121 Identities=35% Similarity=0.595 Sum_probs=111.1
Q ss_pred ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906 37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK 116 (352)
Q Consensus 37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~ 116 (352)
.++|++.++..+++ .+++..++.+++.|++++++|+|+|+|||.|+|++++||++|+++|.+++.++|.. ..++..
T Consensus 263 ~g~G~~~~~~~~~~---~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~~-~~~~~~ 338 (383)
T cd00400 263 LGSGYGAILLALAG---ELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPGL-VASPGA 338 (383)
T ss_pred HcCcHHHHHHHHcC---ChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCcc-cCChHH
Confidence 47888888888875 45667788899999999999999999999999999999999999999999888744 378999
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHH
Q psy15906 117 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAK 161 (352)
Q Consensus 117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~ 161 (352)
|+++||+|++++++|+|++++++++|+||+++.++|+|+++++||
T Consensus 339 ~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 339 YALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999885
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.81 E-value=1.9e-19 Score=178.06 Aligned_cols=119 Identities=18% Similarity=0.288 Sum_probs=102.3
Q ss_pred ccCcHHHHHH-HhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChh
Q psy15906 37 LQVPEKSVRT-MLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG 115 (352)
Q Consensus 37 ~~~~~~~i~~-l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~ 115 (352)
.|.|++.++. ++++ ... ...++.|+++|++|+|+|+|||+|+|++++||++|+++|++++ .++.
T Consensus 259 ~G~g~~~i~~~~~~~---~~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~--------~~~~ 323 (378)
T cd03682 259 LGLGTPLIEDSFFGG---TVY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG--------LPVS 323 (378)
T ss_pred ccCCHHHHHHHHhcC---Cch----HHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC--------CCHH
Confidence 3667778877 5543 222 2235899999999999999999999999999999999998753 3578
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCCchhH
Q psy15906 116 KYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYD 173 (352)
Q Consensus 116 ~~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~~~iy~ 173 (352)
.|+++||||++++++|+|++++++++|+|| .+.++|+|+++++||.+++ +++||+
T Consensus 324 ~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~~~iy~ 378 (378)
T cd03682 324 LLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--HTGIYG 378 (378)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence 999999999999999999999999999999 5788999999999999986 578884
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=99.73 E-value=2.4e-17 Score=164.61 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=101.8
Q ss_pred ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906 37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK 116 (352)
Q Consensus 37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~ 116 (352)
+++||+.++.+.++ ++++++.++++++.|+++|++|+|+|+|||+|+|+|++||++|..++.+ +|. .++..
T Consensus 280 ~g~Gy~~i~~~~~~--~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l----~p~---~~~~~ 350 (414)
T PRK03655 280 LFKGLDEMQQMAAN--QAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH----VPA---VPAAI 350 (414)
T ss_pred ccCCHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh----ccC---CChHH
Confidence 57889999988765 2567788888999999999999999999999999999999999888775 443 46788
Q ss_pred HHHHHHHHHHHhhhc----hhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHh
Q psy15906 117 YALIGAAAQLGGVVR----MTISLTIILIEATGNISFGLPLMLTLITAKWIGD 165 (352)
Q Consensus 117 ~alvG~aa~l~g~~r----~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~ 165 (352)
.+++||+|+++|++| +|+|+.|+++|+| ++|+|++++++.|+.-
T Consensus 351 ~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~~ 398 (414)
T PRK03655 351 TVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLLL 398 (414)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHHH
Confidence 899999999999999 6999999999999 8999999999888764
No 19
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.44 E-value=4.3e-14 Score=134.41 Aligned_cols=134 Identities=22% Similarity=0.241 Sum_probs=115.3
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCchhHHHHHHcCCCCCCCCCCCCCcccccccccc--cCeEEecCCCCHHHHHHHHHhCC
Q psy15906 148 SFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKS--HPVICLRPLETVGNIIDVLKATS 225 (352)
Q Consensus 148 ~~~lp~m~~~~~a~~v~~~~~~~iy~~~l~~~g~p~l~~~~~~~l~~i~V~dIM~--~~vv~l~~~~tV~e~~~~L~~t~ 225 (352)
+.-+|++-++.-.+.|+...|+.+|+.+++. +-++|+|+|+ .+.-++.++++++++.++.++++
T Consensus 155 e~~lPvlstsYDTFTVAtmIN~Al~n~lIKk--------------dI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~ 220 (432)
T COG4109 155 EKGLPVLSTSYDTFTVATMINKALSNQLIKK--------------DIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTG 220 (432)
T ss_pred ccCCceEEecccceeHHHHHHHHHHHhhhhh--------------heeeHHHhccccccceeccccccHHHHHHHHHHcC
Confidence 4568999999999999999999999999875 4679999999 58889999999999999999999
Q ss_pred CCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCCCCcccCCCC------------CCCCcCC---CCCeEEEEEeH
Q psy15906 226 HNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK------------GDASRKD---SPGRLVGLILR 287 (352)
Q Consensus 226 ~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~------------~~~~~l~---~~g~lvGiItR 287 (352)
|+.|||||+...+ ++++|. .+..+++++.++|+++|+++..+ ++++.+| ++.+++|+|||
T Consensus 221 ~sRfPVvn~~~kvvGvVt~rDv--~~~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR 298 (432)
T COG4109 221 HSRFPVVNRSMKVVGVVTMRDV--LDKKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITR 298 (432)
T ss_pred CCccceecccceEEEEEEehhh--hcCCCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEH
Confidence 9999999987443 455655 77788999999999999999966 3455566 47899999999
Q ss_pred HHHHHHHHhh
Q psy15906 288 SQLIILIKHK 297 (352)
Q Consensus 288 sdLi~~L~~~ 297 (352)
+|++++|+..
T Consensus 299 ~dvlk~lq~~ 308 (432)
T COG4109 299 QDVLKSLQMI 308 (432)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 20
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.34 E-value=7.1e-12 Score=124.24 Aligned_cols=122 Identities=20% Similarity=0.164 Sum_probs=102.0
Q ss_pred cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906 38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY 117 (352)
Q Consensus 38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~ 117 (352)
+.|.+.+...++++.+...+ -.++.|++.+.+++++|.++|.+.|++.+||++|..+++..+. + ..+...+
T Consensus 63 g~G~~~v~~~~~~~~~~~~~----~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~--~---~~~~~~l 133 (383)
T cd00400 63 GHGIPEVIEAIALGGGRLPL----RVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL--S---RNDRRIL 133 (383)
T ss_pred CCChHHHHHHHHhCCCCCCH----HHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC--C---HHHHHHH
Confidence 56777777666654433332 3458899999999999999999999999999999999987642 1 1346689
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHhhCCch---hhHHHHHHHHHHHHHHhhcC
Q psy15906 118 ALIGAAAQLGGVVRMTISLTIILIEATGNIS---FGLPLMLTLITAKWIGDFFT 168 (352)
Q Consensus 118 alvG~aa~l~g~~r~pls~~vi~~ElTg~~~---~~lp~m~~~~~a~~v~~~~~ 168 (352)
+.+||||.+++++++|++++++.+|.++... .++|.++++++|+++++.+.
T Consensus 134 ~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~ 187 (383)
T cd00400 134 VACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLF 187 (383)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999998655 78999999999999999863
No 21
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.32 E-value=1e-11 Score=124.05 Aligned_cols=121 Identities=20% Similarity=0.184 Sum_probs=101.8
Q ss_pred cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906 38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY 117 (352)
Q Consensus 38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~ 117 (352)
|+|.+.++..++++..... .-.++.|++.+++++|+|.++|.+.|++.+||++|..+++.++. . ..+...+
T Consensus 64 g~G~~~v~~~l~~~~~~~~----~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~----~-~~~~~~l 134 (402)
T cd01031 64 GSGIPQVEGVLAGLLPPNW----WRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT----S-PEERRQL 134 (402)
T ss_pred CCCHHHHHHHHcCCCCccc----HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC----C-HHHHHHH
Confidence 6678888888886443222 23467899999999999999999999999999999999987542 1 1346789
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHH-hhCCch--hhHHHHHHHHHHHHHHhhc
Q psy15906 118 ALIGAAAQLGGVVRMTISLTIILIE-ATGNIS--FGLPLMLTLITAKWIGDFF 167 (352)
Q Consensus 118 alvG~aa~l~g~~r~pls~~vi~~E-lTg~~~--~~lp~m~~~~~a~~v~~~~ 167 (352)
..+||||.++++.|+|++++++.+| +++++. .+.|+++++++|+.+++.+
T Consensus 135 ~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 187 (402)
T cd01031 135 IAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF 187 (402)
T ss_pred HHHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 777654 7999999999999999875
No 22
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.19 E-value=2.1e-10 Score=107.23 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=85.8
Q ss_pred CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc---------ccCCCCCCcccCC
Q psy15906 192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE---------QSSAGSTDSHKGD 259 (352)
Q Consensus 192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~---------~~~~~~~~~~~~m 259 (352)
...+++.|||+++|+++++++++.++.++|.+++.+.+||+|++++. ++.+|... .+......++.+|
T Consensus 242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~im 321 (382)
T COG3448 242 MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIM 321 (382)
T ss_pred hccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCcccccc
Confidence 45688999999999999999999999999999999999999998655 34444432 2223456789999
Q ss_pred CCCcccCCCCCCCCc---------------CCCCCeEEEEEeHHHHHHHHHhhhc
Q psy15906 260 TSHKRDSSHKGDASR---------------KDSPGRLVGLILRSQLIILIKHKIY 299 (352)
Q Consensus 260 ~~~~~~~~~~~~~~~---------------l~~~g~lvGiItRsdLi~~L~~~~~ 299 (352)
++...|+..+..+.. ++++|+++||||++|++.++.+...
T Consensus 322 t~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~ 376 (382)
T COG3448 322 TTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWS 376 (382)
T ss_pred cCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHH
Confidence 999999986643221 2358999999999999999987653
No 23
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.17 E-value=2.4e-11 Score=111.61 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=89.8
Q ss_pred CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc--cccCCcc--cccCCCCCCcccCCCCCcccCC
Q psy15906 192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT--KHSSDGA--EQSSAGSTDSHKGDTSHKRDSS 267 (352)
Q Consensus 192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~--~~~~d~~--~~~~~~~~~~~~~m~~~~~~~~ 267 (352)
..+.+|+++|++++++++++++++++..+|.+...+|.||+|+++.+ .|.+|.+ +.++..+..++++|++++++++
T Consensus 169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g~~~~kV~~~M~k~vitI~ 248 (294)
T COG2524 169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANGNLDAKVSDYMRKNVITIN 248 (294)
T ss_pred cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcCCccccHHHHhccCCceEc
Confidence 45778999999999999999999999999999999999999998433 4666665 5777889999999999999998
Q ss_pred C------------CCCCCcCC---CCCeEEEEEeHHHHHHHHH
Q psy15906 268 H------------KGDASRKD---SPGRLVGLILRSQLIILIK 295 (352)
Q Consensus 268 ~------------~~~~~~l~---~~g~lvGiItRsdLi~~L~ 295 (352)
. +++.+||- .+|+.+|+|||+|+++.+.
T Consensus 249 eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 249 EDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred CchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 3 35677763 4899999999999999875
No 24
>PRK05277 chloride channel protein; Provisional
Probab=99.12 E-value=3.8e-10 Score=113.92 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=98.9
Q ss_pred cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906 38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY 117 (352)
Q Consensus 38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~ 117 (352)
|+|...++..+++.. ...+ .-.+..|++.+.+++|+|.++|.+.|++.+||++|..++..++... ..+...+
T Consensus 71 GsGi~~i~~~l~~~~-~~~~---~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~~----~~~~~~l 142 (438)
T PRK05277 71 GSGIPEIEGALEGLR-PVRW---WRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLRS----DEARHTL 142 (438)
T ss_pred CCCHHHHHHHHcCCC-ccch---HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccCC----HHHHHHH
Confidence 567778888887532 2221 1234789999999999999999999999999999999998764311 1245679
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHH-hhCCc--h--hhHHHHHHHHHHHHHHhhcC
Q psy15906 118 ALIGAAAQLGGVVRMTISLTIILIE-ATGNI--S--FGLPLMLTLITAKWIGDFFT 168 (352)
Q Consensus 118 alvG~aa~l~g~~r~pls~~vi~~E-lTg~~--~--~~lp~m~~~~~a~~v~~~~~ 168 (352)
..+||||.++++.++|++++++.+| +++.+ . .+.|+++++++|+.+.+.+.
T Consensus 143 i~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~ 198 (438)
T PRK05277 143 LAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFN 198 (438)
T ss_pred HHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999 66532 3 47999999999999998763
No 25
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.04 E-value=2.6e-10 Score=97.80 Aligned_cols=104 Identities=13% Similarity=0.304 Sum_probs=86.1
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccC-------CCCCCcccCCCCCccc
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSS-------AGSTDSHKGDTSHKRD 265 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~-------~~~~~~~~~m~~~~~~ 265 (352)
..++++.+|+++++.+++++++++++++|++.+++.+||++++..++++++..+.+. ..+..+.++|....++
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~ 142 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPT 142 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCc
Confidence 578999999999999999999999999999999999999999866667666654332 3356788899999999
Q ss_pred CCCCCCCCc------------CCCCCeEEEEEeHHHHHHHHHh
Q psy15906 266 SSHKGDASR------------KDSPGRLVGLILRSQLIILIKH 296 (352)
Q Consensus 266 ~~~~~~~~~------------l~~~g~lvGiItRsdLi~~L~~ 296 (352)
++...+.+- .-++|+++|||||.|+++.+..
T Consensus 143 Vs~~~~l~vI~~LL~~~~AVlV~e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 143 VSPDESLNVISQLLEEHPAVLVVENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred CCCCCCHHHHHHHHhhCCeEEEEeCCceEEEEeHHHHHHHHhc
Confidence 997655332 1258999999999999998864
No 26
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.99 E-value=3.2e-09 Score=105.33 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=96.3
Q ss_pred CcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHH
Q psy15906 39 VPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYA 118 (352)
Q Consensus 39 ~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~a 118 (352)
.|.+.+...++++.+...+.. ...|++.+.+++++|.++|.+.|+..+||++|..++..++. . ..+...+.
T Consensus 57 ~g~~~v~~~~~~~~~~~~~~~----~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~----~-~~~~r~l~ 127 (378)
T cd03682 57 KGNNLIIEEIHGPEEGIPLRM----APLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKL----P-EEDRRILL 127 (378)
T ss_pred CChHHHHHHHHccCCCCchHH----HHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCC----C-HHHHHHHH
Confidence 455555556665434343332 34599999999999999999999999999999999986531 1 12345689
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHhh--C--CchhhHHHHHHHHHHHHHHhhcC
Q psy15906 119 LIGAAAQLGGVVRMTISLTIILIEAT--G--NISFGLPLMLTLITAKWIGDFFT 168 (352)
Q Consensus 119 lvG~aa~l~g~~r~pls~~vi~~ElT--g--~~~~~lp~m~~~~~a~~v~~~~~ 168 (352)
.+||||.++++.|+|++++++.+|.+ + ++..++|.++++++++.+++.+.
T Consensus 128 ~~g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~~ 181 (378)
T cd03682 128 IAGIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHALG 181 (378)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999997 3 35778899999999999998764
No 27
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.98 E-value=1.6e-09 Score=77.59 Aligned_cols=56 Identities=25% Similarity=0.543 Sum_probs=53.0
Q ss_pred cccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCC
Q psy15906 197 ARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKD 276 (352)
Q Consensus 197 V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~ 276 (352)
|+++|+++++++++++++.++.+.|.+++.+.+||+|++
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~----------------------------------------- 39 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDED----------------------------------------- 39 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-----------------------------------------
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----------------------------------------
Confidence 679999999999999999999999999999999999976
Q ss_pred CCCeEEEEEeHHHHHHHHH
Q psy15906 277 SPGRLVGLILRSQLIILIK 295 (352)
Q Consensus 277 ~~g~lvGiItRsdLi~~L~ 295 (352)
++++|+|+++||++++.
T Consensus 40 --~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 40 --GKLVGIISRSDLLKALL 56 (57)
T ss_dssp --SBEEEEEEHHHHHHHHH
T ss_pred --CEEEEEEEHHHHHhhhh
Confidence 89999999999999875
No 28
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.87 E-value=2.5e-09 Score=103.73 Aligned_cols=126 Identities=8% Similarity=-0.025 Sum_probs=94.4
Q ss_pred CCchhHHHHHHcCCCC---CCCCCCCCC---ccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-
Q psy15906 168 TEGLYDIHIQLSGIPL---LAWDPPPLS---SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT- 238 (352)
Q Consensus 168 ~~~iy~~~l~~~g~p~---l~~~~~~~l---~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~- 238 (352)
.+++|...++.+|.-. ...++...+ ..++|+|+|++ +++++++++++.++.+.|.+++++.+||+|+++..
T Consensus 169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lv 248 (326)
T PRK10892 169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIE 248 (326)
T ss_pred HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEE
Confidence 3688988899888776 555555556 78899999997 89999999999999999988888777888865344
Q ss_pred c--ccCCccc--ccC--CCCCCcccCCCCCcccCCCC------------CCCCcCC--CCCeEEEEEeHHHHHHH
Q psy15906 239 K--HSSDGAE--QSS--AGSTDSHKGDTSHKRDSSHK------------GDASRKD--SPGRLVGLILRSQLIIL 293 (352)
Q Consensus 239 ~--~~~d~~~--~~~--~~~~~~~~~m~~~~~~~~~~------------~~~~~l~--~~g~lvGiItRsdLi~~ 293 (352)
+ +.+|... ..+ ..+.++.++|+++++++... ++.+.+| ++++++|+|||+|++++
T Consensus 249 Givt~~Dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~dil~~ 323 (326)
T PRK10892 249 GIFTDGDLRRVFDMGIDLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDLLRA 323 (326)
T ss_pred EEEecHHHHHHHhcCCCcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHhHhc
Confidence 3 3333321 111 22467899999999888754 3455555 47899999999999864
No 29
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=98.84 E-value=3.1e-08 Score=97.47 Aligned_cols=127 Identities=19% Similarity=0.242 Sum_probs=97.5
Q ss_pred cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCC-hhH
Q psy15906 38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWID-PGK 116 (352)
Q Consensus 38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~-~~~ 116 (352)
+.|-..+...++.+.+...+..+ +.|++.+.+|.|.|.+-|...|+..+|+++|..+++..+.- + .+ -..
T Consensus 19 g~Gi~~v~~~~~~~~~~~~~~~~----~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~-~----~~~~r~ 89 (355)
T PF00654_consen 19 GSGIPEVKAALRGKSGRLPFRTL----PVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLS-R----NETRRL 89 (355)
T ss_dssp B-SHHHHHHHCTTSS---HHHHH----HHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT---C----HHHHHH
T ss_pred CCCHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhccc-c----hHHHhH
Confidence 45667777777776554444444 78999999999999999999999999999999999874421 1 12 345
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHHhhc-C-CchhH
Q psy15906 117 YALIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFF-T-EGLYD 173 (352)
Q Consensus 117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg---~~~~~lp~m~~~~~a~~v~~~~-~-~~iy~ 173 (352)
+..+|+||.++++.++|++.+++.+|... +...++|.++++++|+.+.+.+ . ++.|.
T Consensus 90 l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~~f~ 151 (355)
T PF00654_consen 90 LLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLLFGNHPIFG 151 (355)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHHHTSS-SS-
T ss_pred HHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHHcCcCcccc
Confidence 99999999999999999999999999865 5789999999999999999987 3 55554
No 30
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=98.84 E-value=2.5e-08 Score=100.89 Aligned_cols=122 Identities=22% Similarity=0.223 Sum_probs=102.0
Q ss_pred cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906 38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY 117 (352)
Q Consensus 38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~ 117 (352)
+.|-+.+...+|...+.+.+... ..|++.+.+++|+|.+.|...|+..+|+++|+.++..+..- ..+-...
T Consensus 91 g~Gi~~~i~a~~~~~~~~~~~~~----~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~~-----~~~~r~L 161 (443)
T COG0038 91 GSGIPQAIEALHGRKGRISPRVL----PVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKLS-----REDRRIL 161 (443)
T ss_pred CCChhHHHHHHhcCCCcccHHHH----HHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCCC-----HHHHHHH
Confidence 45667777777765555555444 44999999999999999999999999999999999987521 1355778
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHhhC----CchhhHHHHHHHHHHHHHHhhcC
Q psy15906 118 ALIGAAAQLGGVVRMTISLTIILIEATG----NISFGLPLMLTLITAKWIGDFFT 168 (352)
Q Consensus 118 alvG~aa~l~g~~r~pls~~vi~~ElTg----~~~~~lp~m~~~~~a~~v~~~~~ 168 (352)
..+|+||-+|++.++|++++++.+|.-. ++..+.|+++++++|+++.+.++
T Consensus 162 l~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~~ 216 (443)
T COG0038 162 LAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLFG 216 (443)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999754 35789999999999999999875
No 31
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.83 E-value=4.8e-09 Score=101.37 Aligned_cols=126 Identities=13% Similarity=0.032 Sum_probs=96.1
Q ss_pred CCchhHHHHHHcCCCC---CCCCCCCCCc---ccccccccccC--eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-
Q psy15906 168 TEGLYDIHIQLSGIPL---LAWDPPPLSS---NITARIVKSHP--VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT- 238 (352)
Q Consensus 168 ~~~iy~~~l~~~g~p~---l~~~~~~~l~---~i~V~dIM~~~--vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~- 238 (352)
.+++|...++.+|.-. ...++...++ ..+|+++|.++ +.+++++++++++.+.+.+++...+||||+++..
T Consensus 164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~i 243 (321)
T PRK11543 164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQ 243 (321)
T ss_pred HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEE
Confidence 3688999998888766 6666666788 88999999998 9999999999999999988888999999976444
Q ss_pred c--ccCCcc--c-ccCCCCCCcccCCCCCcccCCCC------------CCCCcCC---CCCeEEEEEeHHHHHHH
Q psy15906 239 K--HSSDGA--E-QSSAGSTDSHKGDTSHKRDSSHK------------GDASRKD---SPGRLVGLILRSQLIIL 293 (352)
Q Consensus 239 ~--~~~d~~--~-~~~~~~~~~~~~m~~~~~~~~~~------------~~~~~l~---~~g~lvGiItRsdLi~~ 293 (352)
+ +.+|.. . .....++++.++|++++.++... ++.+.+| ++++++|+|||+|++++
T Consensus 244 G~vt~~dl~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 244 GVFTDGDLRRWLVGGGALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEecHHHHHHHHhCCCCcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 2 322321 1 11234567889999998888744 3344555 35899999999999864
No 32
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.76 E-value=5.3e-08 Score=101.61 Aligned_cols=117 Identities=20% Similarity=0.105 Sum_probs=92.7
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHH
Q psy15906 41 EKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120 (352)
Q Consensus 41 ~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alv 120 (352)
.+.++...++ .+.+.+.. ...|++.+++|+|+|.+.|-..|+..+||++|..+++.++. +. ..-.....+
T Consensus 100 ~~~~~~~~~~-~~~~~~~~----~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~--~~---~~~r~l~~~ 169 (574)
T PRK01862 100 TDYMEAVALG-DGVVPVRQ----SLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHF--DP---PRLRLLVAC 169 (574)
T ss_pred HHHHHHHHcC-CCCCChHH----HHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCC--CH---HHHHHHHHH
Confidence 3445544433 33455443 35599999999999999999999999999999999987642 11 223567889
Q ss_pred HHHHHHHhhhchhHHHHHHHHHhh-CCc--hhhHHHHHHHHHHHHHHhhc
Q psy15906 121 GAAAQLGGVVRMTISLTIILIEAT-GNI--SFGLPLMLTLITAKWIGDFF 167 (352)
Q Consensus 121 G~aa~l~g~~r~pls~~vi~~ElT-g~~--~~~lp~m~~~~~a~~v~~~~ 167 (352)
|+||.++++.++|++++++.+|.. +++ ..+.|.++++++|+++++.+
T Consensus 170 G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~ 219 (574)
T PRK01862 170 GAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF 219 (574)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985 543 67899999999999999875
No 33
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=98.68 E-value=3.2e-08 Score=100.78 Aligned_cols=123 Identities=14% Similarity=0.116 Sum_probs=91.2
Q ss_pred cCcHHHHHHHhcCCC--CchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHH----------Hh
Q psy15906 38 QVPEKSVRTMLHDPK--GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQ----------SI 105 (352)
Q Consensus 38 ~~~~~~i~~l~~~~~--~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~----------~~ 105 (352)
|+|...++..+++.. +...+.+ ++.|++.+.+++|+|.|.|.+.|+..+||++|..+++... ..
T Consensus 105 GsGip~v~~~l~g~~~~~~l~~r~----~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~ 180 (466)
T cd03685 105 GSGIPEVKGYLNGVKIPHILRLKT----LLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRY 180 (466)
T ss_pred CCCHHHHHHHHcCcCccccchHHH----HHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhh
Confidence 667777888777432 1112223 4789999999999999999999999999999999997421 11
Q ss_pred cCCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHHhh
Q psy15906 106 FPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDF 166 (352)
Q Consensus 106 ~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg---~~~~~lp~m~~~~~a~~v~~~ 166 (352)
+.. ..+-..+..+||||.++++.++|++.+++.+|.++ ..+...+.++++++|..+++.
T Consensus 181 ~~~--~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~~ 242 (466)
T cd03685 181 FRN--DRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNF 242 (466)
T ss_pred ccC--HHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 111 12345689999999999999999999999999876 234556666666666666654
No 34
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.66 E-value=1.6e-07 Score=94.44 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHh
Q psy15906 64 VVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEA 143 (352)
Q Consensus 64 ~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~El 143 (352)
...|++.+.+++|+|.+.|-..|+..+||++|..+++.++ +. .+-..+..+|+||-++++.++|++.+++.+|.
T Consensus 100 ~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~---~~---~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~ 173 (418)
T PRK01610 100 SLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFT---PR---QEWKLWIACGAAAGMASAYHAPLAGSLFIAEI 173 (418)
T ss_pred HHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhC---Ch---HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 4789999999999999999999999999999999998765 11 34567999999999999999999999999997
Q ss_pred h-C--CchhhHHHHHHHHHHHHHHhhc
Q psy15906 144 T-G--NISFGLPLMLTLITAKWIGDFF 167 (352)
Q Consensus 144 T-g--~~~~~lp~m~~~~~a~~v~~~~ 167 (352)
. + .+..+.|+++++++|+.+++.+
T Consensus 174 l~~~~~~~~~~p~~ias~~a~~v~~~~ 200 (418)
T PRK01610 174 LFGTLMLASLGPVVISAVVALLTTNLL 200 (418)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4 3567899999999999999876
No 35
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=98.64 E-value=1.8e-07 Score=94.86 Aligned_cols=124 Identities=14% Similarity=0.098 Sum_probs=98.2
Q ss_pred cCcHHHHHHHhcCC--CCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChh
Q psy15906 38 QVPEKSVRTMLHDP--KGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG 115 (352)
Q Consensus 38 ~~~~~~i~~l~~~~--~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~ 115 (352)
|+|=..++..+++. ++.+.+..+ +.|++.+.++.|+|.+.|-..|+..+||++|..++++.+.+..+. .+-.
T Consensus 55 GsGIp~v~~~l~g~~~~~~~~~~~~----~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~~~--~~~r 128 (445)
T cd03684 55 GSGIPEIKTILSGFIIRGFLGKWTL----LIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRRNE--AKRR 128 (445)
T ss_pred CCCHHHHHHHHcCccccccccHHHH----HHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhccCH--HHHH
Confidence 45556666666542 233444444 789999999999999999999999999999999998775432121 3446
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHHhhc
Q psy15906 116 KYALIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFF 167 (352)
Q Consensus 116 ~~alvG~aa~l~g~~r~pls~~vi~~ElTg---~~~~~lp~m~~~~~a~~v~~~~ 167 (352)
....+|+||-++++.++|++.+++.+|... +...++|.++++++|..+.+.+
T Consensus 129 ~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~ 183 (445)
T cd03684 129 EILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSL 183 (445)
T ss_pred HHHHHHHhhhhHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999643 3457889999999999998865
No 36
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=98.63 E-value=8.5e-08 Score=96.34 Aligned_cols=124 Identities=11% Similarity=0.129 Sum_probs=97.2
Q ss_pred cCcHHHHHHHhcCC--CCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhc---------
Q psy15906 38 QVPEKSVRTMLHDP--KGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIF--------- 106 (352)
Q Consensus 38 ~~~~~~i~~l~~~~--~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~--------- 106 (352)
|+|-..++..+++. ++.+.+.. ++.|++.+.+++|+|.+.|-..|+..+||++|..+++......
T Consensus 64 GsGIp~v~~~l~g~~~~~~l~~~~----~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~ 139 (416)
T cd01036 64 GSGIPEVMAYLNGVHLPMYLSIRT----LIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQL 139 (416)
T ss_pred CCCHHHHHHHHcCCcccccccHHH----HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhh
Confidence 45556666666542 12223333 4789999999999999999999999999999999998765321
Q ss_pred -CCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhCC---chhhHHHHHHHHHHHHHHhhc
Q psy15906 107 -PEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGN---ISFGLPLMLTLITAKWIGDFF 167 (352)
Q Consensus 107 -p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~---~~~~lp~m~~~~~a~~v~~~~ 167 (352)
.+ ..+...+..+|+||.++++.++|++.+++.+|.+.. ...+.|+++++++|..+.+.+
T Consensus 140 ~~~--~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 140 FRN--PRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred ccC--HHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 11 134467899999999999999999999999998753 346799999999999998875
No 37
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.62 E-value=2.3e-07 Score=92.35 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=97.0
Q ss_pred cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906 38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY 117 (352)
Q Consensus 38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~ 117 (352)
+.+-..++..++++ +...+... +.|++.+.+|+|+|.+.|-..|+..+||++|..+++.++. + ..+....
T Consensus 64 g~gi~~v~~~~~~~-~~~~~~~~----~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~--~---~~~~r~l 133 (388)
T cd01033 64 GKKLVSIKQAVRGK-KRMPFWET----IIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGL--T---VADRRLL 133 (388)
T ss_pred CCCcccHHHHhcCC-CCCCHHHH----HHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCC--C---HHHHHHH
Confidence 33444555555543 23444333 4699999999999999999999999999999999887542 1 1244678
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHHhhcC--Cchh
Q psy15906 118 ALIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFFT--EGLY 172 (352)
Q Consensus 118 alvG~aa~l~g~~r~pls~~vi~~ElTg---~~~~~lp~m~~~~~a~~v~~~~~--~~iy 172 (352)
..+|+||-++++.++|++.+++.+|... +...+.|+++++++|+.+++.+. ++.|
T Consensus 134 i~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~g~~~~f 193 (388)
T cd01033 134 VACAAGAGLAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLLKGDHPIY 193 (388)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCCcee
Confidence 9999999999999999999999999863 45678999999999999998752 4444
No 38
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.60 E-value=3.6e-07 Score=91.04 Aligned_cols=122 Identities=20% Similarity=0.126 Sum_probs=95.4
Q ss_pred cCcHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcC
Q psy15906 38 QVPEKSVRTMLHDPKG-----AFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI 112 (352)
Q Consensus 38 ~~~~~~i~~l~~~~~~-----~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~ 112 (352)
|+|-..+...++.+.+ ..++.. ...|++.+.+|+|+|.+.|-..|+..+||++|..+++..+... ..
T Consensus 53 gsGi~~v~~~~~~~~~~~~~~~~~~r~----~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~----~~ 124 (390)
T cd01034 53 GSGIPQVIAALELPSAAARRRLLSLRT----AVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWG----GL 124 (390)
T ss_pred CCCHHHHHHHHcccccccccccccHHH----HHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCc----hH
Confidence 4455566666664332 233444 4789999999999999999999999999999999998764311 13
Q ss_pred ChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhCC---chhhHHHHHHHHHHHHHHhhc
Q psy15906 113 DPGKYALIGAAAQLGGVVRMTISLTIILIEATGN---ISFGLPLMLTLITAKWIGDFF 167 (352)
Q Consensus 113 ~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~---~~~~lp~m~~~~~a~~v~~~~ 167 (352)
+-.....+|+||-++++.++|++.+++.+|.... .....|+++++++|.++++.+
T Consensus 125 ~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 182 (390)
T cd01034 125 SERGLILAGGAAGLAAAFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLAV 182 (390)
T ss_pred HHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999997642 356778889999998888753
No 39
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.50 E-value=1.2e-07 Score=96.63 Aligned_cols=105 Identities=18% Similarity=0.204 Sum_probs=82.1
Q ss_pred CCcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCCCCcccCC
Q psy15906 191 LSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDTSHKRDSS 267 (352)
Q Consensus 191 ~l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~~~~ 267 (352)
.++.++++++|.+++++++++++++++.+.+.+++++++||+|+++.. ++.+|. .......++.++|++++++++
T Consensus 85 ~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL--~~~~~~~~V~diMt~~~itV~ 162 (479)
T PRK07807 85 VVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADC--AGVDRFTQVRDVMSTDLVTLP 162 (479)
T ss_pred HHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHH--hcCccCCCHHHhccCCceEEC
Confidence 467888999999999999999999999999999999999999876333 233333 222334679999999999888
Q ss_pred CC------------CCCCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906 268 HK------------GDASRKD---SPGRLVGLILRSQLIILIKHK 297 (352)
Q Consensus 268 ~~------------~~~~~l~---~~g~lvGiItRsdLi~~L~~~ 297 (352)
.. ++.+.+| ++++++|+|||+||++.....
T Consensus 163 ~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 163 AGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred CCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 44 3344454 368999999999999987654
No 40
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.38 E-value=1.2e-06 Score=71.57 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=38.8
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
.+++|+|.+++.++++++++.++++.|.+.++..+||+|++
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~ 98 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDD 98 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC
Confidence 78999999999999999999999999999999999999976
No 41
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.31 E-value=7.1e-07 Score=74.03 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=66.4
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--c--cCCCCCCcccCCCCCcccCCCCCCC---
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--Q--SSAGSTDSHKGDTSHKRDSSHKGDA--- 272 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~--~~~~~~~~~~~m~~~~~~~~~~~~~--- 272 (352)
+++.++++++++.++.+.+.+++...+||+|+++.. ++..|... . ....+.++.++|++++.+++...+.
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v 81 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKL 81 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHH
Confidence 467889999999999999999999999999875343 22233210 1 1245678999999999888744321
Q ss_pred ------------------CcC---CCCCeEEEEEeHHHHHHHH
Q psy15906 273 ------------------SRK---DSPGRLVGLILRSQLIILI 294 (352)
Q Consensus 273 ------------------~~l---~~~g~lvGiItRsdLi~~L 294 (352)
..+ +++|+++|+|||+|+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 82 SRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred HhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 011 2358999999999998753
No 42
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.30 E-value=1e-06 Score=89.22 Aligned_cols=123 Identities=14% Similarity=0.161 Sum_probs=84.5
Q ss_pred hHHHHHHcCCCCCCC-CCCCCCcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc-
Q psy15906 172 YDIHIQLSGIPLLAW-DPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE- 246 (352)
Q Consensus 172 y~~~l~~~g~p~l~~-~~~~~l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~- 246 (352)
++.+++.+++-.... .....++.++|+++|.+++.++.++++++++.+.|.+++++.+||+|+++.+ ++..|...
T Consensus 311 ~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~ 390 (454)
T TIGR01137 311 NDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSA 390 (454)
T ss_pred ChHHHHhcCCcccccccHHHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 445566666421111 0123477889999999999999999999999999998899999999875343 33333321
Q ss_pred -cc--CCCCCCcccCCCCCcccCCCCCC------------CCcCCCCCeEEEEEeHHHHHHHH
Q psy15906 247 -QS--SAGSTDSHKGDTSHKRDSSHKGD------------ASRKDSPGRLVGLILRSQLIILI 294 (352)
Q Consensus 247 -~~--~~~~~~~~~~m~~~~~~~~~~~~------------~~~l~~~g~lvGiItRsdLi~~L 294 (352)
.. ...+.++.++|.+++.+++...+ ...+.++++++|+|||+|+++.|
T Consensus 391 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 391 LFAGKANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNSSAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred HhccCCCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHCCeeEEEECCEEEEEEEHHHHHHhh
Confidence 11 12345788899888777764422 11112468999999999999876
No 43
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=98.28 E-value=1.7e-06 Score=87.26 Aligned_cols=126 Identities=10% Similarity=-0.003 Sum_probs=93.2
Q ss_pred cCcHHHHHHHhcCC--CCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCCcCCh
Q psy15906 38 QVPEKSVRTMLHDP--KGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP-EATWIDP 114 (352)
Q Consensus 38 ~~~~~~i~~l~~~~--~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p-~~~~~~~ 114 (352)
|+|=..++..+++. ++.+++.+ +..|++.+.++.|+|.+-|-..|+..+||++|..+++....... .....+-
T Consensus 72 GsGIp~v~~~l~g~~~~~~l~~r~----~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~~~~~~~r 147 (426)
T cd03683 72 GSGIPEMKTILRGVVLPEYLTFKT----LVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGIYENESRR 147 (426)
T ss_pred CCCHHHHHHHHcCCCccccccHHH----HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccCHHHH
Confidence 34545556556542 12233333 47899999999999999999999999999999999887643110 0000122
Q ss_pred hHHHHHHHHHHHHhhhchhHHHHHHHHHhhCC---chhhHHHHHHHHHHHHHHhhc
Q psy15906 115 GKYALIGAAAQLGGVVRMTISLTIILIEATGN---ISFGLPLMLTLITAKWIGDFF 167 (352)
Q Consensus 115 ~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~---~~~~lp~m~~~~~a~~v~~~~ 167 (352)
.....+|+||-++++.++|++.+++.+|.... ...+.|.++++++|..+.+.+
T Consensus 148 r~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~ 203 (426)
T cd03683 148 MEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLL 203 (426)
T ss_pred HHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999997542 356789999999988877653
No 44
>PRK03655 putative ion channel protein; Provisional
Probab=98.24 E-value=9.5e-06 Score=81.51 Aligned_cols=99 Identities=13% Similarity=0.218 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHh
Q psy15906 64 VVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEA 143 (352)
Q Consensus 64 ~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~El 143 (352)
...|++.+.++.+.|.+-|-..|+..+||++|..+++.+. +. .+.....++|+||-++++.++|++.+++.+|.
T Consensus 100 ~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~---~~---~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~ 173 (414)
T PRK03655 100 LPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLL---PR---VNRMDWTILASAGTIGALFGTPVAAALIFSQT 173 (414)
T ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhc---cC---CChhHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 4678899999999999999999999999999999997662 11 23345678999999999999999999999995
Q ss_pred -hCCchh-----hHHHHHHHHHHHHHHhhcC
Q psy15906 144 -TGNISF-----GLPLMLTLITAKWIGDFFT 168 (352)
Q Consensus 144 -Tg~~~~-----~lp~m~~~~~a~~v~~~~~ 168 (352)
.+++.. .++..+++.++..++..+.
T Consensus 174 l~~~~~~~~~~~~~~~v~aa~~a~~v~~~~~ 204 (414)
T PRK03655 174 LNGSNEVPLWDRLFAPLMAAAAGALTTGLFF 204 (414)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 565442 2333445555777766554
No 45
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.22 E-value=2.7e-06 Score=68.64 Aligned_cols=56 Identities=25% Similarity=0.343 Sum_probs=51.2
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 273 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 273 (352)
..+++++|..++.++++++++.++++.|.+++.+.+||+|++
T Consensus 55 ~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-------------------------------------- 96 (111)
T cd04603 55 TLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-------------------------------------- 96 (111)
T ss_pred ccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC--------------------------------------
Confidence 346899999889999999999999999999999999999875
Q ss_pred cCCCCCeEEEEEeHHHHHH
Q psy15906 274 RKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 274 ~l~~~g~lvGiItRsdLi~ 292 (352)
++++|+||++|+++
T Consensus 97 -----~~~~Giit~~di~~ 110 (111)
T cd04603 97 -----GKLVGTIYERELLR 110 (111)
T ss_pred -----CeEEEEEEhHHhhc
Confidence 78999999999975
No 46
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.21 E-value=1.9e-06 Score=87.86 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=80.4
Q ss_pred CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC--
Q psy15906 192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK-- 269 (352)
Q Consensus 192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~-- 269 (352)
.+.+++.++|.++++++.++++++++.+.+.+.+.+.+||+|+++.++.+++.+........++.++|+++++++...
T Consensus 85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~~~~~~V~dIMt~~litv~~~~s 164 (475)
T TIGR01303 85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGVDRFTQVRDIMSTDLVTAPADTE 164 (475)
T ss_pred HhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcCCCCCCHHHHccCCceEeCCCCc
Confidence 457888999999999999999999999999998898999998753332222222222334567999999999888744
Q ss_pred ----------CCCCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906 270 ----------GDASRKD---SPGRLVGLILRSQLIILIKHK 297 (352)
Q Consensus 270 ----------~~~~~l~---~~g~lvGiItRsdLi~~L~~~ 297 (352)
++.+.+| ++++++|+||++||++.....
T Consensus 165 L~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 165 PRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 3344444 478999999999999987654
No 47
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.21 E-value=3.3e-06 Score=68.37 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=51.6
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 273 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 273 (352)
..+++++|.+++.++.++++++++.+.|.+++.+.+||+|++
T Consensus 58 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-------------------------------------- 99 (114)
T cd04619 58 TAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-------------------------------------- 99 (114)
T ss_pred cCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCC--------------------------------------
Confidence 457899999999999999999999999999999999999875
Q ss_pred cCCCCCeEEEEEeHHHHHH
Q psy15906 274 RKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 274 ~l~~~g~lvGiItRsdLi~ 292 (352)
++++|+|+|+|+++
T Consensus 100 -----~~~~Gvi~~~dl~~ 113 (114)
T cd04619 100 -----ARPLGVLNARDALK 113 (114)
T ss_pred -----CcEEEEEEhHhhcc
Confidence 78999999999874
No 48
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.04 E-value=8.6e-06 Score=82.70 Aligned_cols=104 Identities=16% Similarity=0.072 Sum_probs=76.8
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHh-----CCCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCCCCcc
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKA-----TSHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDTSHKR 264 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~-----t~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~ 264 (352)
...+|+++|++++.+++++++++++.+.+++ .+...+||+|++++. ++.+|. ....++.++.++|++++.
T Consensus 129 ~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dL--l~a~~~~~v~~im~~~~~ 206 (449)
T TIGR00400 129 SDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDL--ILAKPEEILSSIMRSSVF 206 (449)
T ss_pred CcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHH--hcCCCCCcHHHHhCCCCe
Confidence 4578999999999999999999999999975 233567888876443 233332 233456788999999888
Q ss_pred cCCCC------------CCCCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906 265 DSSHK------------GDASRKD---SPGRLVGLILRSQLIILIKHKI 298 (352)
Q Consensus 265 ~~~~~------------~~~~~l~---~~g~lvGiItRsdLi~~L~~~~ 298 (352)
++... ++...+| ++|+++|+||++|++..+.+..
T Consensus 207 ~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~ 255 (449)
T TIGR00400 207 SIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA 255 (449)
T ss_pred eECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh
Confidence 77643 2333344 4689999999999999987643
No 49
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.04 E-value=6.8e-06 Score=84.35 Aligned_cols=122 Identities=14% Similarity=0.065 Sum_probs=81.1
Q ss_pred HHHHHHcCCCCCCCCCC-C--CCcccccccccc---cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC---CCCc---cc
Q psy15906 173 DIHIQLSGIPLLAWDPP-P--LSSNITARIVKS---HPVICLRPLETVGNIIDVLKATSHNGFPIVDV---EPMT---KH 240 (352)
Q Consensus 173 ~~~l~~~g~p~l~~~~~-~--~l~~i~V~dIM~---~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~---~~~~---~~ 240 (352)
-.+.+.+|+.+++..-. + ...-.+|+++|. .+..++++++++.++.+.|.+.+++.+||+|+ ++.+ +|
T Consensus 69 iala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT 148 (502)
T PRK07107 69 IALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVT 148 (502)
T ss_pred HHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEE
Confidence 33455566665442211 1 111235788886 34568999999999999999999999999996 2233 34
Q ss_pred cCCcccccCCCCCCcccCCCC--CcccCCCC------------CCCCcCC---CCCeEEEEEeHHHHHHHH
Q psy15906 241 SSDGAEQSSAGSTDSHKGDTS--HKRDSSHK------------GDASRKD---SPGRLVGLILRSQLIILI 294 (352)
Q Consensus 241 ~~d~~~~~~~~~~~~~~~m~~--~~~~~~~~------------~~~~~l~---~~g~lvGiItRsdLi~~L 294 (352)
..|........+.++.++|+. +.+++... ++++.+| ++++++|+|||+|+++..
T Consensus 149 ~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 149 SRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred cHHhhccccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 444322223456789999997 55655532 4455666 368999999999999864
No 50
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.03 E-value=9.2e-06 Score=66.21 Aligned_cols=58 Identities=29% Similarity=0.533 Sum_probs=52.4
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA 272 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 272 (352)
...+++++|.+++.++++++++.++++.|.+.+.+.+||+|++
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~------------------------------------- 109 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDED------------------------------------- 109 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-------------------------------------
Confidence 3557999999999999999999999999999999999999975
Q ss_pred CcCCCCCeEEEEEeHHHHHHH
Q psy15906 273 SRKDSPGRLVGLILRSQLIIL 293 (352)
Q Consensus 273 ~~l~~~g~lvGiItRsdLi~~ 293 (352)
|+++|+|+++|++++
T Consensus 110 ------g~~~Gvit~~di~~~ 124 (124)
T cd04600 110 ------RRLVGIVTQTDLIAA 124 (124)
T ss_pred ------CCEEEEEEhHHhhcC
Confidence 789999999999753
No 51
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.01 E-value=1.1e-05 Score=65.01 Aligned_cols=56 Identities=18% Similarity=0.425 Sum_probs=50.0
Q ss_pred ccccccccccCeEEecCC--CCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPL--ETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD 271 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~--~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~ 271 (352)
..++.++|.+++.+++++ +++.++.+.+.+++.+.+||+|++
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~------------------------------------ 100 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ------------------------------------ 100 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCC------------------------------------
Confidence 357889999888889887 789999999999999999999875
Q ss_pred CCcCCCCCeEEEEEeHHHHHH
Q psy15906 272 ASRKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 272 ~~~l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|||+|+++
T Consensus 101 -------~~~~Gvit~~dl~~ 114 (115)
T cd04620 101 -------GQLIGLVTAESIRQ 114 (115)
T ss_pred -------CCEEEEEEhHHhhc
Confidence 78999999999975
No 52
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.00 E-value=1.1e-05 Score=65.57 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=37.9
Q ss_pred cccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 194 NITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 194 ~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
..+++++|.+ ++.++++++++.++.+.|.+++.+.+||||++
T Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~ 100 (118)
T cd04617 57 KVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKV 100 (118)
T ss_pred CCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCC
Confidence 5568899985 78899999999999999999999999999975
No 53
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.98 E-value=0.00019 Score=72.10 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=55.7
Q ss_pred Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906 192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK 269 (352)
Q Consensus 192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~ 269 (352)
+.+.+|+|+|++ ++++++.+++++++.+.+.+++|+.+||++++
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~---------------------------------- 233 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET---------------------------------- 233 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC----------------------------------
Confidence 668899999996 79999999999999999999999999999865
Q ss_pred CCCCcCCCCCeEEEEEeHHHHHHHHH
Q psy15906 270 GDASRKDSPGRLVGLILRSQLIILIK 295 (352)
Q Consensus 270 ~~~~~l~~~g~lvGiItRsdLi~~L~ 295 (352)
.++++|+|++.|++..+.
T Consensus 234 --------~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 234 --------IDNITGVLYIKDLLPHLN 251 (408)
T ss_pred --------CCceEEEEEHHHHHhHhc
Confidence 257999999999997654
No 54
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.98 E-value=1.7e-05 Score=63.77 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=37.9
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
.+++++|.+++.++++++++.++.+.|.+++.+.+||+|++
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 98 (113)
T cd04607 58 DPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEE 98 (113)
T ss_pred CCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC
Confidence 46889999999999999999999999999999999999865
No 55
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.98 E-value=1.5e-05 Score=63.68 Aligned_cols=58 Identities=24% Similarity=0.386 Sum_probs=52.1
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 273 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 273 (352)
+.+++++|.+++..+.+++++.++.+.+.+.+...+||+|++
T Consensus 52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------------------------------- 93 (109)
T cd04606 52 DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEE-------------------------------------- 93 (109)
T ss_pred cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCC--------------------------------------
Confidence 456889999999999999999999999999999999999875
Q ss_pred cCCCCCeEEEEEeHHHHHHHH
Q psy15906 274 RKDSPGRLVGLILRSQLIILI 294 (352)
Q Consensus 274 ~l~~~g~lvGiItRsdLi~~L 294 (352)
++++|+|+++|+++++
T Consensus 94 -----~~~~Gvit~~dll~~~ 109 (109)
T cd04606 94 -----GRLVGIITVDDVIDVI 109 (109)
T ss_pred -----CcEEEEEEhHHhhhhC
Confidence 7899999999998763
No 56
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.92 E-value=2.8e-05 Score=62.29 Aligned_cols=57 Identities=16% Similarity=0.387 Sum_probs=51.1
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA 272 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 272 (352)
...++.++|.+++.++++++++.++.+.+.+++.+.+||+|++
T Consensus 56 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~------------------------------------- 98 (113)
T cd04615 56 KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDK------------------------------------- 98 (113)
T ss_pred cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCC-------------------------------------
Confidence 3457889999999999999999999999999999999999875
Q ss_pred CcCCCCCeEEEEEeHHHHHH
Q psy15906 273 SRKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 273 ~~l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|++.|+++
T Consensus 99 ------g~~~Gvvt~~dl~~ 112 (113)
T cd04615 99 ------GKVGGIVTEDDILR 112 (113)
T ss_pred ------CeEEEEEEHHHhhc
Confidence 78999999999964
No 57
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.89 E-value=2.8e-05 Score=62.12 Aligned_cols=55 Identities=18% Similarity=0.328 Sum_probs=49.8
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 273 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 273 (352)
..+++++|.+++.++.++++++++.+.|.+.+...+||+|+
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~--------------------------------------- 97 (112)
T cd04625 57 DTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG--------------------------------------- 97 (112)
T ss_pred cCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC---------------------------------------
Confidence 34799999998899999999999999999999999999973
Q ss_pred cCCCCCeEEEEEeHHHHHH
Q psy15906 274 RKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 274 ~l~~~g~lvGiItRsdLi~ 292 (352)
++++|+||++|+++
T Consensus 98 -----~~~~Gvvt~~dl~~ 111 (112)
T cd04625 98 -----GTLLGVISFHDVAK 111 (112)
T ss_pred -----CEEEEEEEHHHhhc
Confidence 68999999999975
No 58
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.89 E-value=2.3e-05 Score=63.69 Aligned_cols=57 Identities=19% Similarity=0.444 Sum_probs=51.7
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA 272 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 272 (352)
...++.++|.+++.++++++++.++.+.+.+.+.+.+||+|++
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~------------------------------------- 107 (122)
T cd04635 65 ASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEK------------------------------------- 107 (122)
T ss_pred ccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-------------------------------------
Confidence 3567889999999999999999999999999999999999875
Q ss_pred CcCCCCCeEEEEEeHHHHHH
Q psy15906 273 SRKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 273 ~~l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|+++|+++
T Consensus 108 ------g~~~Gvit~~dl~~ 121 (122)
T cd04635 108 ------DQLVGIVDRHDVLK 121 (122)
T ss_pred ------CcEEEEEEhHHhhc
Confidence 78999999999975
No 59
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.89 E-value=3.2e-05 Score=63.01 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=47.7
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK 275 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l 275 (352)
...++|..++.++++++++.++.+.|.+++.+.+||+|++
T Consensus 66 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~---------------------------------------- 105 (120)
T cd04641 66 ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN---------------------------------------- 105 (120)
T ss_pred hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCC----------------------------------------
Confidence 3456677788999999999999999999999999999875
Q ss_pred CCCCeEEEEEeHHHHHH
Q psy15906 276 DSPGRLVGLILRSQLII 292 (352)
Q Consensus 276 ~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|||+|++.
T Consensus 106 ---~~~~Givt~~di~~ 119 (120)
T cd04641 106 ---KRVEGIISLSDILQ 119 (120)
T ss_pred ---CCEEEEEEHHHhhc
Confidence 78999999999874
No 60
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.89 E-value=1.5e-05 Score=63.37 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCCcccccccccccC-eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccC
Q psy15906 180 GIPLLAWDPPPLSSNITARIVKSHP-VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKG 258 (352)
Q Consensus 180 g~p~l~~~~~~~l~~i~V~dIM~~~-vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~ 258 (352)
++|..+........-++..|+...- +.++.+++++.++.+.|.+++.+.+||+|++
T Consensus 26 ~~~Vvd~~~~~~~Givt~~Dl~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----------------------- 82 (98)
T cd04618 26 SAPLWDSRKQQFVGMLTITDFILILRLVSIHPERSLFDAALLLLKNKIHRLPVIDPS----------------------- 82 (98)
T ss_pred eEEEEeCCCCEEEEEEEHHHHhhheeeEEeCCCCcHHHHHHHHHHCCCCEeeEEECC-----------------------
Confidence 3455443222334455666666543 7889999999999999999999999999864
Q ss_pred CCCCcccCCCCCCCCcCCCCCeEEEEEeHHHHHH
Q psy15906 259 DTSHKRDSSHKGDASRKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 259 m~~~~~~~~~~~~~~~l~~~g~lvGiItRsdLi~ 292 (352)
+|+++|+||++|+++
T Consensus 83 -------------------~~~~~giit~~d~~~ 97 (98)
T cd04618 83 -------------------TGTGLYILTSRRILK 97 (98)
T ss_pred -------------------CCCceEEeehhhhhc
Confidence 278999999999975
No 61
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.88 E-value=3.2e-05 Score=62.40 Aligned_cols=57 Identities=30% Similarity=0.489 Sum_probs=51.8
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA 272 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 272 (352)
...++.++|.+++.+++++++++++++.+.+.+.+.+||+|++
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~------------------------------------- 107 (122)
T cd04585 65 SKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQ------------------------------------- 107 (122)
T ss_pred cccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCC-------------------------------------
Confidence 3467899999999999999999999999999999999999865
Q ss_pred CcCCCCCeEEEEEeHHHHHH
Q psy15906 273 SRKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 273 ~~l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+||+.|+++
T Consensus 108 ------~~~~Gvvt~~di~~ 121 (122)
T cd04585 108 ------GRLVGIITESDLFR 121 (122)
T ss_pred ------CcEEEEEEHHHhhh
Confidence 78999999999975
No 62
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.88 E-value=2.7e-05 Score=62.12 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=51.1
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 273 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 273 (352)
..+++++|.+++.++++++++.++.+.+.+.+.+.+||+|++
T Consensus 52 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-------------------------------------- 93 (108)
T cd04596 52 DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-------------------------------------- 93 (108)
T ss_pred cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC--------------------------------------
Confidence 456899999999999999999999999999999999999875
Q ss_pred cCCCCCeEEEEEeHHHHHH
Q psy15906 274 RKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 274 ~l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|+++|+++
T Consensus 94 -----~~~~G~it~~di~~ 107 (108)
T cd04596 94 -----KKLLGIISRQDVLK 107 (108)
T ss_pred -----CCEEEEEEHHHhhc
Confidence 78999999999975
No 63
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.88 E-value=3.4e-05 Score=63.13 Aligned_cols=40 Identities=10% Similarity=0.197 Sum_probs=36.1
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
.+.++|.+++.++++++++.++++.|.+++.+.+||+|++
T Consensus 69 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 108 (123)
T cd04627 69 RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQ 108 (123)
T ss_pred hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCC
Confidence 3456888899999999999999999999999999999876
No 64
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.85 E-value=2.4e-05 Score=62.54 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=50.4
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR 274 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~ 274 (352)
.++.++|.+++.++.+++++.++.+.+.+++.+.+||++++
T Consensus 58 ~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~--------------------------------------- 98 (113)
T cd04587 58 TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKS--------------------------------------- 98 (113)
T ss_pred CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCC---------------------------------------
Confidence 57899999999999999999999999999999999999875
Q ss_pred CCCCCeEEEEEeHHHHHH
Q psy15906 275 KDSPGRLVGLILRSQLII 292 (352)
Q Consensus 275 l~~~g~lvGiItRsdLi~ 292 (352)
++++|+|+++|++.
T Consensus 99 ----~~~~Gvvs~~dl~~ 112 (113)
T cd04587 99 ----GQVVGLLDVTKLTH 112 (113)
T ss_pred ----CCEEEEEEHHHhcc
Confidence 68999999999975
No 65
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.85 E-value=2e-05 Score=80.88 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=75.1
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCC-CCcccCCCCC
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDT-SHKRDSSHKG 270 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~-~~~~~~~~~~ 270 (352)
..++++|.+++++++++++++++.+.+.+++++.+||+|+++++ ++.+|... ....+.++.++|+ ++++++....
T Consensus 87 k~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~-~~~~~~~V~dim~~~~~v~v~~~~ 165 (486)
T PRK05567 87 KRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF-ETDLSQPVSEVMTKERLVTVPEGT 165 (486)
T ss_pred hhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh-cccCCCcHHHHcCCCCCEEECCCC
Confidence 35789999999999999999999999999999999999976444 34444321 1223467888998 6666666432
Q ss_pred ------------CCCcCC---CCCeEEEEEeHHHHHHHHH
Q psy15906 271 ------------DASRKD---SPGRLVGLILRSQLIILIK 295 (352)
Q Consensus 271 ------------~~~~l~---~~g~lvGiItRsdLi~~L~ 295 (352)
+...++ ++++++|+||++||++.+.
T Consensus 166 sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 166 TLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 233333 4789999999999998875
No 66
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.84 E-value=3.8e-05 Score=60.76 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=50.2
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR 274 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~ 274 (352)
..++++|.+++.++.+++++.++.+.+.+++.+.+||++++
T Consensus 52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--------------------------------------- 92 (107)
T cd04610 52 ETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDEN--------------------------------------- 92 (107)
T ss_pred ccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCC---------------------------------------
Confidence 46889999889999999999999999999999999999876
Q ss_pred CCCCCeEEEEEeHHHHHH
Q psy15906 275 KDSPGRLVGLILRSQLII 292 (352)
Q Consensus 275 l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|+++|+++
T Consensus 93 ----g~~~Gvi~~~di~~ 106 (107)
T cd04610 93 ----NNLVGIITNTDVIR 106 (107)
T ss_pred ----CeEEEEEEHHHhhc
Confidence 78999999999975
No 67
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.83 E-value=2e-05 Score=80.05 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=76.1
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC---CCc---cccCCcccccCCCCCCcccCCC-CCcccC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE---PMT---KHSSDGAEQSSAGSTDSHKGDT-SHKRDS 266 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~---~~~---~~~~d~~~~~~~~~~~~~~~m~-~~~~~~ 266 (352)
-.+.++.|.+++.+++++++++++.+.+.+++++++||+|++ +.+ ++.+|... ....+.++.++|+ ++++++
T Consensus 79 Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~-~~~~~~~V~dvm~~~~~~~V 157 (450)
T TIGR01302 79 VKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF-VKDKGKPVSEVMTREEVITV 157 (450)
T ss_pred hccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh-hhcCCCCHHHhhCCCCCEEE
Confidence 346788899999999999999999999999999999999976 233 34444321 1123567889998 477777
Q ss_pred CCCC------------CCCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906 267 SHKG------------DASRKD---SPGRLVGLILRSQLIILIKH 296 (352)
Q Consensus 267 ~~~~------------~~~~l~---~~g~lvGiItRsdLi~~L~~ 296 (352)
.... +...+| ++|+++|+||++|+++.+..
T Consensus 158 ~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~ 202 (450)
T TIGR01302 158 PEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKF 202 (450)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccC
Confidence 6442 233333 47899999999999998753
No 68
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.82 E-value=4.5e-05 Score=60.96 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=50.3
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR 274 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~ 274 (352)
.++.++|.+++.++++++++.++.+.+.+++...+||++++
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~--------------------------------------- 99 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDN--------------------------------------- 99 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC---------------------------------------
Confidence 46999999999999999999999999999989999999865
Q ss_pred CCCCCeEEEEEeHHHHHH
Q psy15906 275 KDSPGRLVGLILRSQLII 292 (352)
Q Consensus 275 l~~~g~lvGiItRsdLi~ 292 (352)
++++|+|++.||++
T Consensus 100 ----~~~iG~it~~di~~ 113 (114)
T cd04604 100 ----GRPVGVLHIHDLLR 113 (114)
T ss_pred ----CCEEEEEEHHHhhc
Confidence 78999999999975
No 69
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.82 E-value=5e-05 Score=60.36 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=51.1
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA 272 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 272 (352)
...+++++|.+++.++++++++.++++.+.+.+.+.+||+|++
T Consensus 54 ~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~------------------------------------- 96 (111)
T cd04611 54 LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDD------------------------------------- 96 (111)
T ss_pred CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCC-------------------------------------
Confidence 3567899999999999999999999999999888899999875
Q ss_pred CcCCCCCeEEEEEeHHHHHH
Q psy15906 273 SRKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 273 ~~l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|+++|+++
T Consensus 97 ------~~~~Gvi~~~di~~ 110 (111)
T cd04611 97 ------GELLGLLSQTDLLQ 110 (111)
T ss_pred ------CcEEEEEEhHHhhc
Confidence 78999999999975
No 70
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.82 E-value=4.2e-05 Score=61.61 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=37.7
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
..+++++|.+++.++++++++.++.+.+.+.+.+.+||+|+
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~ 99 (114)
T cd04630 59 RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN 99 (114)
T ss_pred ccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC
Confidence 46789999999999999999999999999999999999974
No 71
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.82 E-value=6.3e-05 Score=59.75 Aligned_cols=50 Identities=14% Similarity=0.345 Sum_probs=44.5
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
+++++++++++.++.+.|.+++++++||+|++ +++++|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~------------------------------------------~~~~~G 39 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR------------------------------------------KQQFVG 39 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC------------------------------------------CCEEEE
Confidence 46789999999999999999999999999864 278999
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
+||++|+.+.+.
T Consensus 40 ivt~~Dl~~~~~ 51 (98)
T cd04618 40 MLTITDFILILR 51 (98)
T ss_pred EEEHHHHhhhee
Confidence 999999988654
No 72
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.81 E-value=4.6e-05 Score=61.45 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=48.6
Q ss_pred cccccccccCeEEecC--CCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906 195 ITARIVKSHPVICLRP--LETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA 272 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~--~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 272 (352)
..++++|.++...+.. ++++.++++.+.+++...+||||++
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~------------------------------------- 99 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDD------------------------------------- 99 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-------------------------------------
Confidence 3588999987777766 9999999999999999999999865
Q ss_pred CcCCCCCeEEEEEeHHHHHH
Q psy15906 273 SRKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 273 ~~l~~~g~lvGiItRsdLi~ 292 (352)
++++|+|||+|+++
T Consensus 100 ------~~~~Gvit~~di~~ 113 (114)
T cd04602 100 ------GELVALVTRSDLKK 113 (114)
T ss_pred ------CeEEEEEEHHHhhc
Confidence 78999999999875
No 73
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.81 E-value=4.7e-05 Score=60.32 Aligned_cols=55 Identities=25% Similarity=0.440 Sum_probs=50.0
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR 274 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~ 274 (352)
.+++++|.+++.++++++++.++.+.+.+.+.+.+||++++
T Consensus 54 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~--------------------------------------- 94 (109)
T cd04583 54 KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDED--------------------------------------- 94 (109)
T ss_pred CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCC---------------------------------------
Confidence 46889999999999999999999999999999999999975
Q ss_pred CCCCCeEEEEEeHHHHHH
Q psy15906 275 KDSPGRLVGLILRSQLII 292 (352)
Q Consensus 275 l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|+++|+++
T Consensus 95 ----g~~~Gvit~~~l~~ 108 (109)
T cd04583 95 ----GKLVGLITRSSLVD 108 (109)
T ss_pred ----CeEEEEEehHHhhc
Confidence 78999999999874
No 74
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.81 E-value=3.2e-05 Score=64.43 Aligned_cols=55 Identities=22% Similarity=0.439 Sum_probs=50.6
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 273 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 273 (352)
..++.++|.+++..+.+++++.++.+.|.+.+.+.+||+| +
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-------------------------------------- 120 (135)
T cd04586 80 GRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-------------------------------------- 120 (135)
T ss_pred CCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-C--------------------------------------
Confidence 4579999999999999999999999999999999999998 5
Q ss_pred cCCCCCeEEEEEeHHHHHH
Q psy15906 274 RKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 274 ~l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|||+|+++
T Consensus 121 -----g~~~Gvit~~di~~ 134 (135)
T cd04586 121 -----GRLVGIVSRADLLR 134 (135)
T ss_pred -----CEEEEEEEhHhhhc
Confidence 78999999999875
No 75
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.80 E-value=3e-05 Score=80.54 Aligned_cols=80 Identities=16% Similarity=0.404 Sum_probs=66.3
Q ss_pred HHHcCCCCCCCCCC------CCCcccccccccc-cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCccccc
Q psy15906 176 IQLSGIPLLAWDPP------PLSSNITARIVKS-HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQS 248 (352)
Q Consensus 176 l~~~g~p~l~~~~~------~~l~~i~V~dIM~-~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~ 248 (352)
.+.+++|.+..... ......+|+++|+ +++++++++++++++.+.|.+++++.+||||++
T Consensus 221 a~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~------------- 287 (546)
T PRK14869 221 AKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED------------- 287 (546)
T ss_pred HHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCC-------------
Confidence 35667777654321 1245788999999 899999999999999999999999999999976
Q ss_pred CCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEEEeHHHHHHHHHhhh
Q psy15906 249 SAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKI 298 (352)
Q Consensus 249 ~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGiItRsdLi~~L~~~~ 298 (352)
|+++|+|+|+|++....++.
T Consensus 288 ------------------------------g~lvGiit~~dl~~~~~~~~ 307 (546)
T PRK14869 288 ------------------------------GKVVGVISRYHLLSPVRKKV 307 (546)
T ss_pred ------------------------------CCEEEEEEHHHhhccccCce
Confidence 79999999999999766544
No 76
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.80 E-value=4.8e-05 Score=60.34 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=48.8
Q ss_pred ccccccccccCeEEecC-CCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRP-LETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA 272 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~-~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 272 (352)
..++.++|.+++..+.+ ++++.++.+.+.+.+++.+||+|++
T Consensus 53 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~------------------------------------- 95 (110)
T cd04601 53 DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDE------------------------------------- 95 (110)
T ss_pred CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC-------------------------------------
Confidence 45788999877776676 9999999999999999999999875
Q ss_pred CcCCCCCeEEEEEeHHHHHH
Q psy15906 273 SRKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 273 ~~l~~~g~lvGiItRsdLi~ 292 (352)
++++|+|+++|++.
T Consensus 96 ------~~~~Gvi~~~dil~ 109 (110)
T cd04601 96 ------GKLKGLITVKDIEK 109 (110)
T ss_pred ------CCEEEEEEhhhhhc
Confidence 78999999999874
No 77
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.79 E-value=6e-05 Score=61.15 Aligned_cols=57 Identities=23% Similarity=0.428 Sum_probs=51.6
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA 272 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 272 (352)
...++.++|.+++..+++++++.++.+.|.+.+.+.+||+|++
T Consensus 65 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~------------------------------------- 107 (122)
T cd04803 65 RDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDK------------------------------------- 107 (122)
T ss_pred cCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-------------------------------------
Confidence 4567899999999999999999999999999999999999875
Q ss_pred CcCCCCCeEEEEEeHHHHHH
Q psy15906 273 SRKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 273 ~~l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|++.|++.
T Consensus 108 ------~~~~Gvit~~dl~~ 121 (122)
T cd04803 108 ------GTLVGIITRSDFLR 121 (122)
T ss_pred ------CCEEEEEEHHHhhc
Confidence 68999999999974
No 78
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.79 E-value=8.1e-05 Score=60.57 Aligned_cols=52 Identities=27% Similarity=0.433 Sum_probs=45.9
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++.+++++++++++.+.+.+++.+.+||+|++ |+++
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-------------------------------------------~~~~ 37 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDEN-------------------------------------------GKVV 37 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-------------------------------------------CeEE
Confidence 367889999999999999999999999999865 7899
Q ss_pred EEEeHHHHHHHHHhh
Q psy15906 283 GLILRSQLIILIKHK 297 (352)
Q Consensus 283 GiItRsdLi~~L~~~ 297 (352)
|++++.|++.++.++
T Consensus 38 Giv~~~dl~~~~~~~ 52 (120)
T cd04641 38 DVYSRFDVINLAKEG 52 (120)
T ss_pred EEEeHHHHHHHHhcC
Confidence 999999999876543
No 79
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.79 E-value=5.2e-05 Score=61.07 Aligned_cols=59 Identities=22% Similarity=0.506 Sum_probs=51.5
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 273 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 273 (352)
..+++++|.+++.++.+++++.++++.|.+++...+||+|++.
T Consensus 57 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~------------------------------------- 99 (115)
T cd04593 57 PSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGN------------------------------------- 99 (115)
T ss_pred cccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCC-------------------------------------
Confidence 3458889999999999999999999999999999999998650
Q ss_pred cCCCCCeEEEEEeHHHHHHH
Q psy15906 274 RKDSPGRLVGLILRSQLIIL 293 (352)
Q Consensus 274 ~l~~~g~lvGiItRsdLi~~ 293 (352)
+|+++|+|+++|++++
T Consensus 100 ----~~~~~Gvit~~di~~~ 115 (115)
T cd04593 100 ----PGQVLGLLTRENVLLA 115 (115)
T ss_pred ----CCeEEEEEEhHHhhcC
Confidence 2789999999999863
No 80
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.79 E-value=4.7e-05 Score=60.74 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=37.5
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
..+.++|.+++.++++++++.++.+.|.+++.+.+||+|++
T Consensus 56 ~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 96 (111)
T cd04639 56 APVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS 96 (111)
T ss_pred CcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCC
Confidence 36889999999999999999999999999999999999865
No 81
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.78 E-value=6.6e-05 Score=59.35 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=48.9
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK 275 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l 275 (352)
+++++|.+++..+.+++++.++.+.+.+.+.+..||+|++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~---------------------------------------- 91 (106)
T cd04582 52 CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED---------------------------------------- 91 (106)
T ss_pred chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCC----------------------------------------
Confidence 4788998888889999999999999999999999999875
Q ss_pred CCCCeEEEEEeHHHHHH
Q psy15906 276 DSPGRLVGLILRSQLII 292 (352)
Q Consensus 276 ~~~g~lvGiItRsdLi~ 292 (352)
++++|+|+|+|+++
T Consensus 92 ---~~~~Gvi~~~~l~~ 105 (106)
T cd04582 92 ---GRYVGEVTQRSIAD 105 (106)
T ss_pred ---CcEEEEEEHHHhhc
Confidence 78999999999974
No 82
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.77 E-value=4.8e-05 Score=60.76 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=50.0
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR 274 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~ 274 (352)
.+++++|.+++.++.++++++++.+.+.+.+.+.+||++++
T Consensus 58 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~--------------------------------------- 98 (113)
T cd04622 58 TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDD--------------------------------------- 98 (113)
T ss_pred CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCC---------------------------------------
Confidence 35899999999999999999999999999999999999865
Q ss_pred CCCCCeEEEEEeHHHHHH
Q psy15906 275 KDSPGRLVGLILRSQLII 292 (352)
Q Consensus 275 l~~~g~lvGiItRsdLi~ 292 (352)
++++|+|++.|+++
T Consensus 99 ----~~~~G~it~~di~~ 112 (113)
T cd04622 99 ----GRLVGIVSLGDLAR 112 (113)
T ss_pred ----CcEEEEEEHHHhhc
Confidence 78999999999975
No 83
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.77 E-value=6e-05 Score=60.00 Aligned_cols=55 Identities=24% Similarity=0.358 Sum_probs=50.0
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR 274 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~ 274 (352)
.++.++|.+++.++++++++.++.+.+.+.+.+.+||++++
T Consensus 55 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~--------------------------------------- 95 (110)
T cd04588 55 AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE--------------------------------------- 95 (110)
T ss_pred cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCC---------------------------------------
Confidence 56888999899999999999999999999999999999875
Q ss_pred CCCCCeEEEEEeHHHHHH
Q psy15906 275 KDSPGRLVGLILRSQLII 292 (352)
Q Consensus 275 l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|+++|+++
T Consensus 96 ----~~~~G~i~~~dl~~ 109 (110)
T cd04588 96 ----GRPVGIITRTDILR 109 (110)
T ss_pred ----CCEEEEEEhHHhhc
Confidence 78999999999974
No 84
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.76 E-value=5.3e-05 Score=61.74 Aligned_cols=56 Identities=25% Similarity=0.545 Sum_probs=50.9
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 273 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 273 (352)
..++.++|.+++..+++++++.++.+.+.+.+.+.+||+|++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-------------------------------------- 110 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDD-------------------------------------- 110 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCC--------------------------------------
Confidence 457889999999999999999999999999999999999875
Q ss_pred cCCCCCeEEEEEeHHHHHH
Q psy15906 274 RKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 274 ~l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|+++|+++
T Consensus 111 -----~~~~Gvit~~di~~ 124 (125)
T cd04631 111 -----GKLVGIVTERDLLK 124 (125)
T ss_pred -----CcEEEEEEHHHhhc
Confidence 68999999999975
No 85
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.75 E-value=6e-05 Score=60.09 Aligned_cols=56 Identities=21% Similarity=0.490 Sum_probs=51.4
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC-CCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV-EPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA 272 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~-~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 272 (352)
..++.++|.+++.++++++++.++.+.+.+.+.+.+||+|+ +
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~------------------------------------- 99 (114)
T cd04613 57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDP------------------------------------- 99 (114)
T ss_pred cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCC-------------------------------------
Confidence 36899999999999999999999999999999999999987 4
Q ss_pred CcCCCCCeEEEEEeHHHHHH
Q psy15906 273 SRKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 273 ~~l~~~g~lvGiItRsdLi~ 292 (352)
++++|+|+++|++.
T Consensus 100 ------~~~~Gvvt~~di~~ 113 (114)
T cd04613 100 ------GKLLGILSRSDLLS 113 (114)
T ss_pred ------CEEEEEEEhHHhhc
Confidence 68999999999874
No 86
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.75 E-value=6.7e-05 Score=60.22 Aligned_cols=40 Identities=18% Similarity=0.418 Sum_probs=37.9
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHh-CCCCeEEEEeCC
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKA-TSHNGFPIVDVE 235 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~-t~~~~fPVVd~~ 235 (352)
++.++|+++++++.+++++.++.+.+.+ .+.+.+||++++
T Consensus 63 ~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~ 103 (117)
T COG0517 63 PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDD 103 (117)
T ss_pred cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC
Confidence 7999999999999999999999999999 699999999976
No 87
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.74 E-value=7.6e-05 Score=62.75 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=37.9
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
..+++++|.+++..+.+++++.++.+.+.+.+++.+||+++
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~ 120 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN 120 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence 55799999999999999999999999999999999999974
No 88
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.74 E-value=8.6e-05 Score=59.17 Aligned_cols=40 Identities=13% Similarity=0.276 Sum_probs=37.2
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEe
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd 233 (352)
..+++++|.+++.++++++++.++.+.+.+.+.+.+||++
T Consensus 55 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 94 (110)
T cd04595 55 HAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE 94 (110)
T ss_pred cCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe
Confidence 4578899999999999999999999999999999999998
No 89
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.74 E-value=8.3e-05 Score=59.37 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=37.5
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
..++.++|.+++..+.+++++.++.+.+.+.+.+.+||+|+
T Consensus 57 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 97 (112)
T cd04802 57 EVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD 97 (112)
T ss_pred cCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC
Confidence 45789999999999999999999999999999999999984
No 90
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.72 E-value=7.8e-05 Score=76.71 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=55.4
Q ss_pred ccccccccccC--eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906 194 NITARIVKSHP--VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD 271 (352)
Q Consensus 194 ~i~V~dIM~~~--vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~ 271 (352)
+.+|+++|+++ ++++++++++.+++++|.+++.+.+||||++
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~------------------------------------ 205 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED------------------------------------ 205 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC------------------------------------
Confidence 56799999976 8899999999999999999999999999876
Q ss_pred CCcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906 272 ASRKDSPGRLVGLILRSQLIILIKH 296 (352)
Q Consensus 272 ~~~l~~~g~lvGiItRsdLi~~L~~ 296 (352)
++++|+|||+|+++.+..
T Consensus 206 -------g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 206 -------GELVDLVTRTDVKRVKGY 223 (505)
T ss_pred -------CeEEEEEEHHHHHHHhhC
Confidence 789999999999999875
No 91
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.70 E-value=6.8e-05 Score=60.16 Aligned_cols=54 Identities=20% Similarity=0.352 Sum_probs=47.5
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 273 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 273 (352)
+.+++++|.+++.++++++++.++.+.+.+. +.+||+|++
T Consensus 62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~--~~~~Vv~~~-------------------------------------- 101 (116)
T cd04643 62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQ--PFLPVVDDD-------------------------------------- 101 (116)
T ss_pred CCcHHHHhcCCCceecCCCCHHHHHHHHhcC--CceeEEeCC--------------------------------------
Confidence 4578999999999999999999999999764 469999875
Q ss_pred cCCCCCeEEEEEeHHHHHH
Q psy15906 274 RKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 274 ~l~~~g~lvGiItRsdLi~ 292 (352)
++++|+||++|+++
T Consensus 102 -----~~~~Gvit~~dil~ 115 (116)
T cd04643 102 -----GIFIGIITRREILK 115 (116)
T ss_pred -----CeEEEEEEHHHhhc
Confidence 78999999999975
No 92
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.69 E-value=9.7e-05 Score=58.25 Aligned_cols=58 Identities=22% Similarity=0.317 Sum_probs=49.4
Q ss_pred ccccccccccc-CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906 193 SNITARIVKSH-PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD 271 (352)
Q Consensus 193 ~~i~V~dIM~~-~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~ 271 (352)
.-++.+|++.. .+.++++++++.++.+.|.+++.+.+||+|++
T Consensus 38 Giv~~~dl~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~------------------------------------ 81 (96)
T cd04614 38 GIITERDLIAKSEVVTATKRTTVSECAQKMKRNRIEQIPIINGN------------------------------------ 81 (96)
T ss_pred EEEEHHHHhcCCCcEEecCCCCHHHHHHHHHHhCCCeeeEECCC------------------------------------
Confidence 44577777754 37889999999999999999999999999875
Q ss_pred CCcCCCCCeEEEEEeHHHHHHH
Q psy15906 272 ASRKDSPGRLVGLILRSQLIIL 293 (352)
Q Consensus 272 ~~~l~~~g~lvGiItRsdLi~~ 293 (352)
++++|+|+|+|++++
T Consensus 82 -------~~~~Giit~~di~~~ 96 (96)
T cd04614 82 -------DKLIGLLRDHDLLKP 96 (96)
T ss_pred -------CcEEEEEEHHHhhcC
Confidence 689999999999853
No 93
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.69 E-value=6.6e-05 Score=61.84 Aligned_cols=58 Identities=24% Similarity=0.270 Sum_probs=47.7
Q ss_pred cccccccccccCeEEe------cCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccC
Q psy15906 193 SNITARIVKSHPVICL------RPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDS 266 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l------~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~ 266 (352)
...+++++|.++...+ .+++++.++++.|.+++.+.+||+|++
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~------------------------------- 110 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDRE------------------------------- 110 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECC-------------------------------
Confidence 3567899998765433 268899999999999999999999874
Q ss_pred CCCCCCCcCCCCCeEEEEEeHHHHHH
Q psy15906 267 SHKGDASRKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 267 ~~~~~~~~l~~~g~lvGiItRsdLi~ 292 (352)
+|+++|+||++|+++
T Consensus 111 -----------~~~~~G~it~~di~~ 125 (126)
T cd04640 111 -----------HHQIRGIISTSDIAR 125 (126)
T ss_pred -----------CCEEEEEEeHHHHhh
Confidence 268999999999975
No 94
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.69 E-value=0.0001 Score=58.88 Aligned_cols=56 Identities=20% Similarity=0.346 Sum_probs=50.1
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 273 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 273 (352)
+.+++++|.+++.++.+++++.++.+.+.+.+....||++++
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------------------------------- 97 (112)
T cd04624 56 DTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG-------------------------------------- 97 (112)
T ss_pred ccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCC--------------------------------------
Confidence 346889999999999999999999999998888999999875
Q ss_pred cCCCCCeEEEEEeHHHHHH
Q psy15906 274 RKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 274 ~l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|+++|+++
T Consensus 98 -----g~~~Gilt~~dl~~ 111 (112)
T cd04624 98 -----GELVGVISIRDLVR 111 (112)
T ss_pred -----CcEEEEEEHHHhcc
Confidence 78999999999974
No 95
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.68 E-value=8.6e-05 Score=61.03 Aligned_cols=58 Identities=17% Similarity=0.371 Sum_probs=50.3
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 273 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 273 (352)
..++.++|.++++++++++++.++.+.|.+++...+||++++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~-------------------------------------- 111 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD-------------------------------------- 111 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC--------------------------------------
Confidence 457889999999999999999999999999988999998642
Q ss_pred cCCCCCeEEEEEeHHHHHH
Q psy15906 274 RKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 274 ~l~~~g~lvGiItRsdLi~ 292 (352)
++++++|+||++|+++
T Consensus 112 ---~~~~~~Gvit~~di~~ 127 (128)
T cd04632 112 ---DDTKVVGILTKKDVLR 127 (128)
T ss_pred ---CCCcEEEEEEhHhhhc
Confidence 0378999999999874
No 96
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.67 E-value=0.00012 Score=58.27 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=49.1
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK 275 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l 275 (352)
+++++|.+++.++.++++++++.+.+.+.+.+.+||++++
T Consensus 56 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------------------------- 95 (110)
T cd04605 56 SVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAE---------------------------------------- 95 (110)
T ss_pred CHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCC----------------------------------------
Confidence 4888998899999999999999999999888999999875
Q ss_pred CCCCeEEEEEeHHHHHH
Q psy15906 276 DSPGRLVGLILRSQLII 292 (352)
Q Consensus 276 ~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|+|.|+++
T Consensus 96 ---~~~~G~v~~~di~~ 109 (110)
T cd04605 96 ---NRVIGIITSEDISK 109 (110)
T ss_pred ---CcEEEEEEHHHhhh
Confidence 78999999999964
No 97
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.67 E-value=9.9e-05 Score=76.70 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=55.4
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 273 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 273 (352)
..+|+|+|.++++++++++++.++++.|.+++.+.+||+|++
T Consensus 67 ~~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-------------------------------------- 108 (546)
T PRK14869 67 KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-------------------------------------- 108 (546)
T ss_pred CCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------------------------------------
Confidence 368999999999999999999999999999999999999976
Q ss_pred cCCCCCeEEEEEeHHHHHHHHHh
Q psy15906 274 RKDSPGRLVGLILRSQLIILIKH 296 (352)
Q Consensus 274 ~l~~~g~lvGiItRsdLi~~L~~ 296 (352)
|+++|+|+++|+.+.+.+
T Consensus 109 -----g~l~Givt~~di~~~~~~ 126 (546)
T PRK14869 109 -----GKLLGLVSLSDLARAYMD 126 (546)
T ss_pred -----CEEEEEEEHHHHHHHHHh
Confidence 799999999999987754
No 98
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.67 E-value=6.5e-05 Score=76.41 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=84.8
Q ss_pred CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-c--ccCCcc---cc-cCCCCCCcccCCCCCcc
Q psy15906 192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT-K--HSSDGA---EQ-SSAGSTDSHKGDTSHKR 264 (352)
Q Consensus 192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~-~--~~~d~~---~~-~~~~~~~~~~~m~~~~~ 264 (352)
+-..++.++|+.+.+++++..++.++.+.|.+.+.+..-|++++... + |-+|.. +. ..+...++.++||++++
T Consensus 146 ~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p~~ 225 (610)
T COG2905 146 FILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPVI 225 (610)
T ss_pred HHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccCce
Confidence 34568999999999999999999999999999998888888765333 2 333332 12 23557899999999999
Q ss_pred cCC------------CCCCCCcCC--CCCeEEEEEeHHHHHHHHHh
Q psy15906 265 DSS------------HKGDASRKD--SPGRLVGLILRSQLIILIKH 296 (352)
Q Consensus 265 ~~~------------~~~~~~~l~--~~g~lvGiItRsdLi~~L~~ 296 (352)
+++ .++.+.++| ++|+.+|+||-+|+++....
T Consensus 226 svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 226 SVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred eecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHHHHHhhCC
Confidence 998 447899888 58999999999999998764
No 99
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.66 E-value=9.9e-05 Score=58.55 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=35.1
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEe
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd 233 (352)
++.++|.++..++++++++.++.+.+.+++.+.+||+|
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~ 88 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD 88 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE
Confidence 47788988899999999999999999999999999997
No 100
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.65 E-value=0.00018 Score=47.61 Aligned_cols=47 Identities=32% Similarity=0.639 Sum_probs=42.0
Q ss_pred eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEE
Q psy15906 205 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGL 284 (352)
Q Consensus 205 vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGi 284 (352)
+.++.+++++.++.+.+.+.+++.+||++++ ++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~g~ 38 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-------------------------------------------GRLVGI 38 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-------------------------------------------CeEEEE
Confidence 4678899999999999999999999999875 689999
Q ss_pred EeHHHHHHHH
Q psy15906 285 ILRSQLIILI 294 (352)
Q Consensus 285 ItRsdLi~~L 294 (352)
+++.++.+.+
T Consensus 39 i~~~~l~~~~ 48 (49)
T smart00116 39 VTRRDIIKAL 48 (49)
T ss_pred EEHHHHHHhh
Confidence 9999998775
No 101
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.65 E-value=0.00013 Score=59.98 Aligned_cols=53 Identities=32% Similarity=0.441 Sum_probs=47.2
Q ss_pred cccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCC
Q psy15906 197 ARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKD 276 (352)
Q Consensus 197 V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~ 276 (352)
+.+.|.+++.++++++++.++.+.|.+++.+.+||+|++
T Consensus 73 ~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~----------------------------------------- 111 (126)
T cd04642 73 SDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEE----------------------------------------- 111 (126)
T ss_pred ccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-----------------------------------------
Confidence 346778889999999999999999999988999999875
Q ss_pred CCCeEEEEEeHHHHHH
Q psy15906 277 SPGRLVGLILRSQLII 292 (352)
Q Consensus 277 ~~g~lvGiItRsdLi~ 292 (352)
++++|+||++|+++
T Consensus 112 --~~~~Giit~~dil~ 125 (126)
T cd04642 112 --GKPIGVITLTDIIS 125 (126)
T ss_pred --CCEEEEEEHHHHhc
Confidence 78999999999974
No 102
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.63 E-value=0.00017 Score=57.37 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=37.5
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
..++.++|.+++.++.+++++.++++.+.+.+.+.+||+++
T Consensus 58 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~ 98 (113)
T cd04623 58 DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG 98 (113)
T ss_pred ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC
Confidence 45799999999999999999999999999999999999974
No 103
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.62 E-value=0.00011 Score=58.78 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=45.0
Q ss_pred ccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCC
Q psy15906 200 VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPG 279 (352)
Q Consensus 200 IM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g 279 (352)
+|.+++.++++++++.++.+.|.+.+.+.+||++ + |
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~-------------------------------------------~ 91 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-E-------------------------------------------G 91 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-C-------------------------------------------C
Confidence 8888899999999999999999999999999995 3 6
Q ss_pred eEEEEEeHHHHHH
Q psy15906 280 RLVGLILRSQLII 292 (352)
Q Consensus 280 ~lvGiItRsdLi~ 292 (352)
+++|+|+|+|+++
T Consensus 92 ~~~Gvvt~~dl~~ 104 (105)
T cd04591 92 RLVGIITRKDLLK 104 (105)
T ss_pred eEEEEEEhhhhhc
Confidence 8999999999975
No 104
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.61 E-value=0.00013 Score=58.09 Aligned_cols=54 Identities=13% Similarity=0.256 Sum_probs=47.1
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR 274 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~ 274 (352)
..+.++|. ++.++.+++++.++.+.+.+++.+.+||+|++
T Consensus 57 ~~~~~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--------------------------------------- 96 (111)
T cd04590 57 LDLRDLLR-PPLFVPESTPLDDLLEEMRKERSHMAIVVDEY--------------------------------------- 96 (111)
T ss_pred CCHHHHhc-CCeecCCCCcHHHHHHHHHhcCCcEEEEEECC---------------------------------------
Confidence 34666664 67889999999999999999999999999975
Q ss_pred CCCCCeEEEEEeHHHHHH
Q psy15906 275 KDSPGRLVGLILRSQLII 292 (352)
Q Consensus 275 l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|||+|++.
T Consensus 97 ----~~~~Gvit~~di~~ 110 (111)
T cd04590 97 ----GGTAGLVTLEDILE 110 (111)
T ss_pred ----CCEEEEeEHHHhhc
Confidence 78999999999974
No 105
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.61 E-value=0.00017 Score=57.26 Aligned_cols=55 Identities=27% Similarity=0.440 Sum_probs=50.2
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR 274 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~ 274 (352)
.++.++|.+++.++.+++++.++.+.+.+.+.+.+||+|++
T Consensus 56 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~--------------------------------------- 96 (111)
T cd04612 56 VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDS--------------------------------------- 96 (111)
T ss_pred cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC---------------------------------------
Confidence 56889999999999999999999999999999999999865
Q ss_pred CCCCCeEEEEEeHHHHHH
Q psy15906 275 KDSPGRLVGLILRSQLII 292 (352)
Q Consensus 275 l~~~g~lvGiItRsdLi~ 292 (352)
++++|+|++.|+++
T Consensus 97 ----~~~~G~it~~di~~ 110 (111)
T cd04612 97 ----GRLVGIVSRSDLLR 110 (111)
T ss_pred ----CCEEEEEEHHHhhh
Confidence 68999999999975
No 106
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.60 E-value=0.00015 Score=58.90 Aligned_cols=55 Identities=25% Similarity=0.396 Sum_probs=50.2
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR 274 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~ 274 (352)
.++.++|.+++..+++++++.++.+.+.+.+.+.+||+|++
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~--------------------------------------- 107 (122)
T cd04637 67 RRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDEN--------------------------------------- 107 (122)
T ss_pred hHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC---------------------------------------
Confidence 46889999999999999999999999999999999999875
Q ss_pred CCCCCeEEEEEeHHHHHH
Q psy15906 275 KDSPGRLVGLILRSQLII 292 (352)
Q Consensus 275 l~~~g~lvGiItRsdLi~ 292 (352)
++++|+|+++|+++
T Consensus 108 ----~~~~Gvit~~dll~ 121 (122)
T cd04637 108 ----GQLIGIITWKDLLK 121 (122)
T ss_pred ----CCEEEEEEHHHhhh
Confidence 68999999999974
No 107
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.60 E-value=0.00018 Score=57.32 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=37.2
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
..+++++|.+++..+++++++.++.+.+.+++...+||+|+
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04589 56 STPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG 96 (111)
T ss_pred CCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC
Confidence 44688999999999999999999999999999999999974
No 108
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.59 E-value=0.00013 Score=58.42 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=37.2
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
..++.++|.+++.++.+++++.++.+.+.+++.+.+||+|+
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 99 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD 99 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC
Confidence 45788999989999999999999999999999899999984
No 109
>PRK11573 hypothetical protein; Provisional
Probab=97.58 E-value=0.002 Score=64.82 Aligned_cols=62 Identities=8% Similarity=0.105 Sum_probs=55.0
Q ss_pred Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906 192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK 269 (352)
Q Consensus 192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~ 269 (352)
+.+.+|+|+|++ ++.+++.+.+++++.+.+.+++|+.+||.+++
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~---------------------------------- 229 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS---------------------------------- 229 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC----------------------------------
Confidence 678899999985 78999999999999999999999999999865
Q ss_pred CCCCcCCCCCeEEEEEeHHHHHHHHH
Q psy15906 270 GDASRKDSPGRLVGLILRSQLIILIK 295 (352)
Q Consensus 270 ~~~~~l~~~g~lvGiItRsdLi~~L~ 295 (352)
...++|+|...|++..+.
T Consensus 230 --------~D~IiGiv~~kDll~~~~ 247 (413)
T PRK11573 230 --------LDDAISMLRVREAYRLMT 247 (413)
T ss_pred --------CCceEEEEEHHHHHHHhh
Confidence 256899999999987654
No 110
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.58 E-value=0.00019 Score=68.91 Aligned_cols=62 Identities=18% Similarity=0.446 Sum_probs=54.8
Q ss_pred Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906 192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK 269 (352)
Q Consensus 192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~ 269 (352)
+...+|+++|++ ++.+++.+++++++.+.+.+++|+.|||++++
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~---------------------------------- 109 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED---------------------------------- 109 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC----------------------------------
Confidence 467799999997 69999999999999999999999999999865
Q ss_pred CCCCcCCCCCeEEEEEeHHHHHHHHH
Q psy15906 270 GDASRKDSPGRLVGLILRSQLIILIK 295 (352)
Q Consensus 270 ~~~~~l~~~g~lvGiItRsdLi~~L~ 295 (352)
.++++|+|+..|++..+.
T Consensus 110 --------~d~iiGiv~~kDll~~~~ 127 (292)
T PRK15094 110 --------KDHIEGILMAKDLLPFMR 127 (292)
T ss_pred --------CCcEEEEEEHHHHHhHhh
Confidence 257999999999987653
No 111
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.56 E-value=0.00012 Score=58.87 Aligned_cols=42 Identities=12% Similarity=0.257 Sum_probs=36.2
Q ss_pred cccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 194 NITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 194 ~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
..++.++|.+ ++.++.+++++.++.+.|.+.+.+.+||+|++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~ 99 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDS 99 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCC
Confidence 4568889974 36689999999999999999999999999875
No 112
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.55 E-value=0.00025 Score=56.42 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=37.5
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
..++.++|.+++.++++++++.++.+.+.+.+.+.+||+++
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04800 56 DTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD 96 (111)
T ss_pred cCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence 35789999999999999999999999999999999999974
No 113
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.55 E-value=0.00023 Score=58.97 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=36.9
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
.++.++|.+++..+.+++++.++.+.+.+.+.+.+||+|+
T Consensus 78 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~ 117 (132)
T cd04636 78 KKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD 117 (132)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC
Confidence 4789999999999999999999999999999999999984
No 114
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.53 E-value=0.00021 Score=57.01 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=37.3
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
..++.++|.+++.++.+++++.++.+.|.+++....||+|+
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04626 56 EKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD 96 (111)
T ss_pred cCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence 34688999999999999999999999999999999999974
No 115
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.52 E-value=0.00035 Score=58.94 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=45.8
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.|.+.+.+.+||+|++ |+++|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-------------------------------------------g~l~G 38 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-------------------------------------------DFLEG 38 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-------------------------------------------CeEEE
Confidence 57889999999999999998899999999976 78999
Q ss_pred EEeHHHHHHHHHhh
Q psy15906 284 LILRSQLIILIKHK 297 (352)
Q Consensus 284 iItRsdLi~~L~~~ 297 (352)
+|+..|+++.+...
T Consensus 39 ivt~~Dl~~~~~~~ 52 (133)
T cd04592 39 ILTLGDIQRFLFTN 52 (133)
T ss_pred EEEHHHHHHHHhhc
Confidence 99999999988643
No 116
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.52 E-value=0.00026 Score=55.64 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=36.8
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
.++.++|.+++.++++++++.++.+.+.+++...+||+|+
T Consensus 51 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 90 (105)
T cd04599 51 RLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE 90 (105)
T ss_pred CCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC
Confidence 3588999999999999999999999999999999999984
No 117
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.51 E-value=0.0002 Score=57.92 Aligned_cols=42 Identities=24% Similarity=0.513 Sum_probs=38.1
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
...++.++|.+++.++++++++.++.+.+.+.+.+.+||+|+
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 106 (121)
T cd04633 65 RNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD 106 (121)
T ss_pred hccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC
Confidence 356788999999999999999999999999999999999984
No 118
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.49 E-value=0.00018 Score=67.52 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=53.9
Q ss_pred ccccccccccC-eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906 194 NITARIVKSHP-VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA 272 (352)
Q Consensus 194 ~i~V~dIM~~~-vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 272 (352)
.++|+|+|.++ +.+++++++++++.+.+.+.+++.+||+|++
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~------------------------------------- 196 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN------------------------------------- 196 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-------------------------------------
Confidence 57999999988 9999999999999999998899999999875
Q ss_pred CcCCCCCeEEEEEeHHHHHHHHH
Q psy15906 273 SRKDSPGRLVGLILRSQLIILIK 295 (352)
Q Consensus 273 ~~l~~~g~lvGiItRsdLi~~L~ 295 (352)
|+++|+|+++|+.+.+.
T Consensus 197 ------g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 197 ------NQLVGVFTDGDLRRALL 213 (268)
T ss_pred ------CCEEEEEEcHHHHHHHh
Confidence 78999999999998754
No 119
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.45 E-value=0.00028 Score=56.95 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=38.1
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
...++.++|.+++.++.++++++++.+.+.+.+++.+||+++
T Consensus 65 ~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~ 106 (121)
T cd04584 65 LKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED 106 (121)
T ss_pred cCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC
Confidence 356789999999999999999999999999999999999974
No 120
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.43 E-value=0.00058 Score=54.20 Aligned_cols=51 Identities=22% Similarity=0.452 Sum_probs=45.2
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++.+++++++++++.+.+.+++++.+||+|++ |+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~ 38 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-------------------------------------------GRLV 38 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-------------------------------------------CcEE
Confidence 567889999999999999999899999999865 7999
Q ss_pred EEEeHHHHHHHHHh
Q psy15906 283 GLILRSQLIILIKH 296 (352)
Q Consensus 283 GiItRsdLi~~L~~ 296 (352)
|+|+++|++..+..
T Consensus 39 G~v~~~~l~~~~~~ 52 (110)
T cd04605 39 GIVTSWDISKAVAR 52 (110)
T ss_pred EEEeHHHHHHHHhh
Confidence 99999999877643
No 121
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.43 E-value=0.00054 Score=56.23 Aligned_cols=49 Identities=31% Similarity=0.617 Sum_probs=44.0
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+++.+.+++++||+|++ ++++|
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------------------------------------~~~~G 38 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-------------------------------------------GKLTG 38 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-------------------------------------------CcEEE
Confidence 56788999999999999999999999999976 78999
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
+|++.|+..++.
T Consensus 39 ~it~~dl~~~~~ 50 (128)
T cd04632 39 IVTRHDIVDFVV 50 (128)
T ss_pred EEEHHHHHHHHh
Confidence 999999998764
No 122
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.43 E-value=0.00047 Score=54.84 Aligned_cols=51 Identities=25% Similarity=0.540 Sum_probs=44.9
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++.+++++++++++.+.+.+.+++.+||+|++ ++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~ 37 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-------------------------------------------GRLV 37 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCC-------------------------------------------CCEE
Confidence 356789999999999999999899999999875 7899
Q ss_pred EEEeHHHHHHHHHh
Q psy15906 283 GLILRSQLIILIKH 296 (352)
Q Consensus 283 GiItRsdLi~~L~~ 296 (352)
|+|++.|+...+.+
T Consensus 38 G~v~~~~l~~~~~~ 51 (114)
T cd04613 38 GIVSLDDIREILFD 51 (114)
T ss_pred EEEEHHHHHHHHhc
Confidence 99999999887643
No 123
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.41 E-value=0.00061 Score=54.09 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=44.6
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G 38 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-------------------------------------------GRLVG 38 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-------------------------------------------CCEEE
Confidence 56778999999999999999999999999875 68999
Q ss_pred EEeHHHHHHHHHh
Q psy15906 284 LILRSQLIILIKH 296 (352)
Q Consensus 284 iItRsdLi~~L~~ 296 (352)
+|++.|+++++..
T Consensus 39 iv~~~~l~~~~~~ 51 (113)
T cd04623 39 IFSERDIVRKVAL 51 (113)
T ss_pred EEehHHHHHHHhh
Confidence 9999999987754
No 124
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.40 E-value=0.00024 Score=73.07 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=53.7
Q ss_pred cccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906 194 NITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD 271 (352)
Q Consensus 194 ~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~ 271 (352)
..+++++|++ +++++++++++.++.++|.+++.+.+||||++
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~------------------------------------ 201 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDN------------------------------------ 201 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC------------------------------------
Confidence 4679999997 89999999999999999999999999999976
Q ss_pred CCcCCCCCeEEEEEeHHHHHHHHH
Q psy15906 272 ASRKDSPGRLVGLILRSQLIILIK 295 (352)
Q Consensus 272 ~~~l~~~g~lvGiItRsdLi~~L~ 295 (352)
++++|+|||+|+++...
T Consensus 202 -------g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 202 -------GELVALVSRSDLKKNRG 218 (495)
T ss_pred -------CcEEEEEEehHhhhccc
Confidence 68999999999998764
No 125
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.40 E-value=0.00035 Score=55.24 Aligned_cols=54 Identities=24% Similarity=0.456 Sum_probs=45.8
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 273 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 273 (352)
..++.++|.+++.++++++++.++.+++.+ .+ ..|||+++
T Consensus 56 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~-------------------------------------- 95 (110)
T cd04609 56 SLPVREVMGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEG-------------------------------------- 95 (110)
T ss_pred CcCHHHHhcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecC--------------------------------------
Confidence 356889999899999999999999999988 33 47888865
Q ss_pred cCCCCCeEEEEEeHHHHHH
Q psy15906 274 RKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 274 ~l~~~g~lvGiItRsdLi~ 292 (352)
++++|+||++|+++
T Consensus 96 -----~~~~Gvvt~~di~~ 109 (110)
T cd04609 96 -----GKFVGIITRADLLK 109 (110)
T ss_pred -----CeEEEEEeHHHhhc
Confidence 78999999999874
No 126
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.37 E-value=0.00057 Score=55.50 Aligned_cols=51 Identities=22% Similarity=0.432 Sum_probs=45.4
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++.++++++++.++.+.+.+.+++.+||+|++ |+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~ 38 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-------------------------------------------RRLV 38 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-------------------------------------------CCEE
Confidence 577889999999999999999899999999875 7899
Q ss_pred EEEeHHHHHHHHHh
Q psy15906 283 GLILRSQLIILIKH 296 (352)
Q Consensus 283 GiItRsdLi~~L~~ 296 (352)
|+|++.||+..+..
T Consensus 39 Giv~~~~l~~~~~~ 52 (124)
T cd04600 39 GIVTQRDLLRHARP 52 (124)
T ss_pred EEEEHHHHHhhhcc
Confidence 99999999887653
No 127
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.36 E-value=0.00046 Score=53.92 Aligned_cols=53 Identities=26% Similarity=0.481 Sum_probs=48.6
Q ss_pred cccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCC
Q psy15906 197 ARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKD 276 (352)
Q Consensus 197 V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~ 276 (352)
+.++|..++.++++++++.++.+.+.+.+.+.+||+|++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~----------------------------------------- 98 (113)
T cd02205 60 VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDE----------------------------------------- 98 (113)
T ss_pred HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCC-----------------------------------------
Confidence 678899999999999999999999999999999999875
Q ss_pred CCCeEEEEEeHHHHHH
Q psy15906 277 SPGRLVGLILRSQLII 292 (352)
Q Consensus 277 ~~g~lvGiItRsdLi~ 292 (352)
++++|+|+++|+++
T Consensus 99 --~~~~G~i~~~dl~~ 112 (113)
T cd02205 99 --GRLVGIVTRSDILR 112 (113)
T ss_pred --CcEEEEEEHHHhhc
Confidence 78999999999875
No 128
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.34 E-value=0.00055 Score=56.88 Aligned_cols=50 Identities=26% Similarity=0.517 Sum_probs=44.6
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++.++.+++++.++.+.+.+++++.+||+|++ ++++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-------------------------------------------~~~~ 38 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-------------------------------------------GRLV 38 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-------------------------------------------CCEE
Confidence 567889999999999999999999999999865 7899
Q ss_pred EEEeHHHHHHHHH
Q psy15906 283 GLILRSQLIILIK 295 (352)
Q Consensus 283 GiItRsdLi~~L~ 295 (352)
|+|++.|+.+.+.
T Consensus 39 Gvi~~~dl~~~~~ 51 (135)
T cd04586 39 GIVSEGDLLRRAE 51 (135)
T ss_pred EEeeHHHHHHHhc
Confidence 9999999987654
No 129
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.00084 Score=53.44 Aligned_cols=50 Identities=14% Similarity=0.384 Sum_probs=44.3
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G 38 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-------------------------------------------ERPIG 38 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-------------------------------------------CCEEE
Confidence 46778999999999999998889999999875 78999
Q ss_pred EEeHHHHHHHHHh
Q psy15906 284 LILRSQLIILIKH 296 (352)
Q Consensus 284 iItRsdLi~~L~~ 296 (352)
+|++.|+++.+.+
T Consensus 39 ~v~~~~l~~~~~~ 51 (112)
T cd04624 39 IVTERDIVRAVAA 51 (112)
T ss_pred EeeHHHHHHHHhc
Confidence 9999999887654
No 130
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.31 E-value=0.0009 Score=53.89 Aligned_cols=49 Identities=12% Similarity=0.250 Sum_probs=43.8
Q ss_pred eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEE
Q psy15906 205 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGL 284 (352)
Q Consensus 205 vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGi 284 (352)
+.++++++++.++.+.+.+.+++.+||+|++ |+++|+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-------------------------------------------g~~~G~ 39 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH-------------------------------------------GKLAGV 39 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCC-------------------------------------------CCEEEE
Confidence 5678999999999999999999999999876 789999
Q ss_pred EeHHHHHHHHHh
Q psy15906 285 ILRSQLIILIKH 296 (352)
Q Consensus 285 ItRsdLi~~L~~ 296 (352)
|+++|+.+++.+
T Consensus 40 vt~~dl~~~~~~ 51 (114)
T cd04619 40 LTKTDVVRQMGR 51 (114)
T ss_pred EehHHHHHHHhh
Confidence 999999987643
No 131
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.31 E-value=0.00069 Score=53.31 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=43.6
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
++++++++++++.++.+.|.+.+...+||+|++ |+++
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~ 37 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDD-------------------------------------------GKLS 37 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-------------------------------------------CCEE
Confidence 367889999999999999988889999999875 7899
Q ss_pred EEEeHHHHHHHH
Q psy15906 283 GLILRSQLIILI 294 (352)
Q Consensus 283 GiItRsdLi~~L 294 (352)
|+++.+|+....
T Consensus 38 Giv~~~dl~~~~ 49 (96)
T cd04614 38 GIITERDLIAKS 49 (96)
T ss_pred EEEEHHHHhcCC
Confidence 999999998754
No 132
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.30 E-value=0.00081 Score=54.67 Aligned_cols=52 Identities=19% Similarity=0.442 Sum_probs=45.3
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++.+++++.++.++.+.+.+.+++.+||+|++ +|+++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~------------------------------------------~~~~~ 38 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG------------------------------------------TGKLV 38 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCC------------------------------------------CCEEE
Confidence 356788999999999999999999999999874 27999
Q ss_pred EEEeHHHHHHHHHh
Q psy15906 283 GLILRSQLIILIKH 296 (352)
Q Consensus 283 GiItRsdLi~~L~~ 296 (352)
|+|++.|+...+.+
T Consensus 39 G~v~~~dl~~~~~~ 52 (125)
T cd04631 39 GIITATDILKYLGG 52 (125)
T ss_pred EEEEHHHHHHHhhc
Confidence 99999999987754
No 133
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.28 E-value=0.00066 Score=54.68 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=47.2
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCC---eEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHN---GFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG 270 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~---~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~ 270 (352)
..+++++|.+++..+.+++++.++.+.|.+.+.. ..|||+++
T Consensus 60 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~----------------------------------- 104 (119)
T cd04598 60 KKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEE----------------------------------- 104 (119)
T ss_pred CCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeC-----------------------------------
Confidence 4569999999999999999999999999877642 44688765
Q ss_pred CCCcCCCCCeEEEEEeHHHHHH
Q psy15906 271 DASRKDSPGRLVGLILRSQLII 292 (352)
Q Consensus 271 ~~~~l~~~g~lvGiItRsdLi~ 292 (352)
|+++|+|++.|+++
T Consensus 105 --------~~~~Gvvs~~di~~ 118 (119)
T cd04598 105 --------GRYLGIGTVKDLLR 118 (119)
T ss_pred --------CeEEEEEEHHHHhc
Confidence 78999999999874
No 134
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.26 E-value=0.0009 Score=53.18 Aligned_cols=50 Identities=38% Similarity=0.624 Sum_probs=44.0
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G 38 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-------------------------------------------GHLVG 38 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-------------------------------------------CcEEE
Confidence 56778999999999999988889999999875 78999
Q ss_pred EEeHHHHHHHHHh
Q psy15906 284 LILRSQLIILIKH 296 (352)
Q Consensus 284 iItRsdLi~~L~~ 296 (352)
+|++.|+.+.+..
T Consensus 39 ~v~~~~l~~~~~~ 51 (111)
T cd04639 39 LLTRDDLIRALAE 51 (111)
T ss_pred EeeHHHHHHHHHh
Confidence 9999999987653
No 135
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.00074 Score=53.40 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=35.3
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
.+.++|.+++.++.+++++.++.+.+.+.+.+.+||+|+
T Consensus 53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~ 91 (106)
T cd04638 53 QLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD 91 (106)
T ss_pred hHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 467889888999999999999999999999999999983
No 136
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.00088 Score=54.20 Aligned_cols=50 Identities=22% Similarity=0.497 Sum_probs=44.5
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.++.+++++.++.+.+.+.+++.+||+|++ |+++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G 38 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-------------------------------------------GKLVG 38 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-------------------------------------------CCEEE
Confidence 56788999999999999999999999999875 78999
Q ss_pred EEeHHHHHHHHHh
Q psy15906 284 LILRSQLIILIKH 296 (352)
Q Consensus 284 iItRsdLi~~L~~ 296 (352)
+++++|+.+.+..
T Consensus 39 ~v~~~~l~~~~~~ 51 (122)
T cd04803 39 LLTQRDLLRAALS 51 (122)
T ss_pred EEEHHHHHHHhcc
Confidence 9999999987653
No 137
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.00047 Score=69.77 Aligned_cols=105 Identities=15% Similarity=0.066 Sum_probs=81.7
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhC-----CCCeEEEEeCCCCc-cccCCcccccCCCCCCcccCCCCCcccCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKAT-----SHNGFPIVDVEPMT-KHSSDGAEQSSAGSTDSHKGDTSHKRDSS 267 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t-----~~~~fPVVd~~~~~-~~~~d~~~~~~~~~~~~~~~m~~~~~~~~ 267 (352)
.-+++.+|+..+++++++.|++++++.+++. ....+.|||+++.. +..+-.....+.++..+.++|.+++.++.
T Consensus 131 e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~~~~i~~im~~~~~~V~ 210 (451)
T COG2239 131 EDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEPDELLKDLMEDDVVSVL 210 (451)
T ss_pred hhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCcHhHHHHHhcccceeec
Confidence 4479999999999999999999999999854 45678999988534 22333334667788999999999998888
Q ss_pred CCCC------------CCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906 268 HKGD------------ASRKD---SPGRLVGLILRSQLIILIKHKI 298 (352)
Q Consensus 268 ~~~~------------~~~l~---~~g~lvGiItRsdLi~~L~~~~ 298 (352)
...+ .--+| ++++++|+||-.|++..+.+..
T Consensus 211 ~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa 256 (451)
T COG2239 211 ADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEA 256 (451)
T ss_pred ccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHH
Confidence 5543 22234 5789999999999999997543
No 138
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.17 E-value=0.00098 Score=55.14 Aligned_cols=50 Identities=32% Similarity=0.587 Sum_probs=44.7
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.+++++||+|++ ++++|
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G 38 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-------------------------------------------GRVVG 38 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-------------------------------------------CCEEE
Confidence 56788999999999999998889999999875 78999
Q ss_pred EEeHHHHHHHHHh
Q psy15906 284 LILRSQLIILIKH 296 (352)
Q Consensus 284 iItRsdLi~~L~~ 296 (352)
+|++.|+...+.+
T Consensus 39 ~i~~~~l~~~~~~ 51 (132)
T cd04636 39 IVSEGDLIRKIYK 51 (132)
T ss_pred EEeHHHHHHHHhc
Confidence 9999999988764
No 139
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.17 E-value=0.0015 Score=52.45 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=44.4
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G 38 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-------------------------------------------GGVVG 38 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-------------------------------------------CCEEE
Confidence 56678999999999999999899999999875 78999
Q ss_pred EEeHHHHHHHHHh
Q psy15906 284 LILRSQLIILIKH 296 (352)
Q Consensus 284 iItRsdLi~~L~~ 296 (352)
++++.||.+.+.+
T Consensus 39 ~v~~~dl~~~~~~ 51 (115)
T cd04593 39 IITLPDLLRALEA 51 (115)
T ss_pred EEEHHHHHHHHhc
Confidence 9999999987754
No 140
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.16 E-value=0.0017 Score=50.63 Aligned_cols=51 Identities=27% Similarity=0.567 Sum_probs=45.0
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++.++++.++.+.+.+.+++.+||+|++ ++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~G 38 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-------------------------------------------GRLVG 38 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-------------------------------------------CCEEE
Confidence 46778999999999999999889999999875 68999
Q ss_pred EEeHHHHHHHHHhh
Q psy15906 284 LILRSQLIILIKHK 297 (352)
Q Consensus 284 iItRsdLi~~L~~~ 297 (352)
+++++|++..+.+.
T Consensus 39 ~v~~~~l~~~~~~~ 52 (113)
T cd02205 39 IVTERDLLRALAEG 52 (113)
T ss_pred EEeHHHHHHHHHhc
Confidence 99999999988654
No 141
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.16 E-value=0.00081 Score=64.59 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=53.4
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR 274 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~ 274 (352)
.+++++|.++ .++++++++.++++.|++.+.+..||||+.
T Consensus 133 ~~l~~l~r~~-~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~--------------------------------------- 172 (292)
T PRK15094 133 FSMDKVLRQA-VVVPESKRVDRMLKEFRSQRYHMAIVIDEF--------------------------------------- 172 (292)
T ss_pred CCHHHHcCCC-cCcCCCCcHHHHHHHHHhcCCEEEEEEeCC---------------------------------------
Confidence 3478899765 489999999999999999999999999975
Q ss_pred CCCCCeEEEEEeHHHHHHHHHhhhc
Q psy15906 275 KDSPGRLVGLILRSQLIILIKHKIY 299 (352)
Q Consensus 275 l~~~g~lvGiItRsdLi~~L~~~~~ 299 (352)
|.++|+||++|++..+...+.
T Consensus 173 ----G~viGiVTleDIle~ivGei~ 193 (292)
T PRK15094 173 ----GGVSGLVTIEDILELIVGEIE 193 (292)
T ss_pred ----CCEEEEeEHHHHHHHHhCCCc
Confidence 779999999999999986554
No 142
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.16 E-value=0.0014 Score=52.52 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=42.7
Q ss_pred cCeEEecCCCCHHHHHHHHHhCC-CCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATS-HNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRL 281 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~-~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~l 281 (352)
+++.++++++++.++.+.+.+.+ ...+||+|++ +++
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~ 37 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-------------------------------------------GRY 37 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-------------------------------------------CcE
Confidence 35678899999999999987664 7889999875 789
Q ss_pred EEEEeHHHHHHHHH
Q psy15906 282 VGLILRSQLIILIK 295 (352)
Q Consensus 282 vGiItRsdLi~~L~ 295 (352)
+|+|+++|++....
T Consensus 38 ~G~v~~~dl~~~~~ 51 (114)
T cd04801 38 VGIISLADLRAIPT 51 (114)
T ss_pred EEEEEHHHHHHHHH
Confidence 99999999998764
No 143
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.001 Score=53.78 Aligned_cols=48 Identities=25% Similarity=0.540 Sum_probs=42.9
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++.+++++++++++.+.+.+.+++.+||+|++ |+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~ 37 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-------------------------------------------GELI 37 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-------------------------------------------CcEE
Confidence 356789999999999999998899999999865 7899
Q ss_pred EEEeHHHHHHH
Q psy15906 283 GLILRSQLIIL 293 (352)
Q Consensus 283 GiItRsdLi~~ 293 (352)
|++++.|++..
T Consensus 38 G~v~~~~l~~~ 48 (122)
T cd04635 38 GIITRRDIIRA 48 (122)
T ss_pred EEEEcHHHHhh
Confidence 99999999875
No 144
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.0016 Score=52.10 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=43.9
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
+++++++++++.++.+.+.+.+.+.+||+|++ ++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G 38 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-------------------------------------------GKYVG 38 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-------------------------------------------CcEEE
Confidence 46789999999999999999899999999875 78999
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
+|+.+|+.+.+.
T Consensus 39 iv~~~dl~~~~~ 50 (116)
T cd04643 39 TISLTDILWKLK 50 (116)
T ss_pred EEeHHHHHHHhh
Confidence 999999988764
No 145
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.14 E-value=0.001 Score=65.76 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=53.0
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK 275 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l 275 (352)
.+.+.|.+.+.++++++++.+++..+.++++. +||||++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~---------------------------------------- 341 (363)
T TIGR01186 303 GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDED---------------------------------------- 341 (363)
T ss_pred chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCC----------------------------------------
Confidence 46777888888999999999999999999988 9999976
Q ss_pred CCCCeEEEEEeHHHHHHHHHhhh
Q psy15906 276 DSPGRLVGLILRSQLIILIKHKI 298 (352)
Q Consensus 276 ~~~g~lvGiItRsdLi~~L~~~~ 298 (352)
|+++|+|+|.+++.+|.+..
T Consensus 342 ---~~~~g~i~~~~~~~~~~~~~ 361 (363)
T TIGR01186 342 ---QRLVGIVTRGSLVDALYDSR 361 (363)
T ss_pred ---CcEEEEEEHHHHHHHHHhhc
Confidence 89999999999999997654
No 146
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.13 E-value=0.0019 Score=52.34 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=44.0
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.++++++++.++.+.+...+.+.+||+|++ ++++|
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G 38 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-------------------------------------------GDLVG 38 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------------------------------------CCEEE
Confidence 56789999999999999988888999999975 78999
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
+|++.|+.++..
T Consensus 39 ivt~~dl~~~~~ 50 (118)
T cd04617 39 VVSRKDLLKASI 50 (118)
T ss_pred EEEHHHHHHHHH
Confidence 999999998774
No 147
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.12 E-value=0.0015 Score=51.35 Aligned_cols=48 Identities=17% Similarity=0.412 Sum_probs=42.6
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++.+++++.+.+.+.+++.+||+|++ |+++|
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-------------------------------------------g~~~G 38 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-------------------------------------------GQPLG 38 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-------------------------------------------CCEEE
Confidence 56788999999999999998889999999865 78999
Q ss_pred EEeHHHHHHHH
Q psy15906 284 LILRSQLIILI 294 (352)
Q Consensus 284 iItRsdLi~~L 294 (352)
++++.|+.+..
T Consensus 39 iv~~~dl~~~~ 49 (106)
T cd04582 39 FVTRREAARAS 49 (106)
T ss_pred EEeHHHHHHhc
Confidence 99999998764
No 148
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.10 E-value=0.0012 Score=54.05 Aligned_cols=49 Identities=29% Similarity=0.480 Sum_probs=44.0
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.|.+++...+||+|++ ++++|
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-------------------------------------------~~~~G 38 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-------------------------------------------GKLIG 38 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-------------------------------------------CcEEE
Confidence 46789999999999999998889999999875 78999
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
+|++.|+.....
T Consensus 39 iv~~~dl~~~~~ 50 (126)
T cd04642 39 NISASDLKGLLL 50 (126)
T ss_pred EEEHHHhhhhhc
Confidence 999999998764
No 149
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.10 E-value=0.0018 Score=51.56 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=43.4
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++..++++++++++.+.+.+++++.+||+|++ |+++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G 38 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-------------------------------------------EKLKG 38 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-------------------------------------------CCEEE
Confidence 56788999999999999999999999999875 78999
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
++++.|++....
T Consensus 39 ~v~~~dl~~~~~ 50 (111)
T cd04626 39 VVTFTDILDLDL 50 (111)
T ss_pred EEehHHhHHHHh
Confidence 999999987654
No 150
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.09 E-value=0.0014 Score=55.30 Aligned_cols=41 Identities=15% Similarity=0.354 Sum_probs=37.5
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
..++.++|.+++.++++++++.++.+.+.+.+...+||+++
T Consensus 88 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~ 128 (143)
T cd04634 88 KMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED 128 (143)
T ss_pred cCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence 45788999999999999999999999999999999999974
No 151
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.07 E-value=0.0026 Score=50.95 Aligned_cols=50 Identities=12% Similarity=0.255 Sum_probs=43.7
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.++++++++.++.+.+.+.+.+.+||+|++ .++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~------------------------------------------~~~~~G 39 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRR------------------------------------------ESDAYG 39 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECC------------------------------------------CCcEEE
Confidence 56789999999999999998899999999863 268999
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
+++.+|+++.+.
T Consensus 40 ~v~~~dl~~~~~ 51 (114)
T cd04630 40 IVTMRDILKKVV 51 (114)
T ss_pred EEehHHHHHHHH
Confidence 999999998664
No 152
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.06 E-value=0.0023 Score=52.14 Aligned_cols=51 Identities=16% Similarity=0.373 Sum_probs=44.1
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.++++++++.++.+.+.+.++..+||+|++ .++++|
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~------------------------------------------~~~~~G 39 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE------------------------------------------SGEVIG 39 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCC------------------------------------------CCcEEE
Confidence 56788999999999999998889999999864 268999
Q ss_pred EEeHHHHHHHHHh
Q psy15906 284 LILRSQLIILIKH 296 (352)
Q Consensus 284 iItRsdLi~~L~~ 296 (352)
+|+..|+++++..
T Consensus 40 iv~~~dl~~~~~~ 52 (123)
T cd04627 40 ILSQRRLVEFLWE 52 (123)
T ss_pred EEEHHHHHHHHHH
Confidence 9999999987643
No 153
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.04 E-value=0.0019 Score=51.51 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=44.0
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+++...+||+|++ ++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G 38 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-------------------------------------------GNLVG 38 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-------------------------------------------CeEEE
Confidence 56788999999999999988888899999875 78999
Q ss_pred EEeHHHHHHHHHh
Q psy15906 284 LILRSQLIILIKH 296 (352)
Q Consensus 284 iItRsdLi~~L~~ 296 (352)
+|++.|+++++..
T Consensus 39 ~v~~~~l~~~~~~ 51 (114)
T cd04629 39 FLSEQDCLKQLLE 51 (114)
T ss_pred EeehHHHHHHhhh
Confidence 9999999987654
No 154
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.04 E-value=0.0018 Score=54.38 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=44.0
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.++..+||+|++ ++++|
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-------------------------------------------~~~~G 38 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-------------------------------------------GKPVG 38 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-------------------------------------------CCEEE
Confidence 45678999999999999999899999999875 78999
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
+|++.|++..+.
T Consensus 39 iv~~~dl~~~~~ 50 (135)
T cd04621 39 VITYRDLAFAEF 50 (135)
T ss_pred EEeHHHHHHHhh
Confidence 999999998774
No 155
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.03 E-value=0.0027 Score=50.05 Aligned_cols=50 Identities=18% Similarity=0.364 Sum_probs=43.7
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++..++++.+++++.+.+.+.++..+||+|++ ++++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~ 38 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-------------------------------------------NKLL 38 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-------------------------------------------CcEE
Confidence 356778999999999999998899999999875 7899
Q ss_pred EEEeHHHHHHHHH
Q psy15906 283 GLILRSQLIILIK 295 (352)
Q Consensus 283 GiItRsdLi~~L~ 295 (352)
|+|++.|+.....
T Consensus 39 G~v~~~dl~~~~~ 51 (109)
T cd04583 39 GIVSLESLEQAYK 51 (109)
T ss_pred EEEEHHHHHHHhh
Confidence 9999999987653
No 156
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.01 E-value=0.0021 Score=51.05 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=42.6
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
.++.+++++++++++.+.+.+.+++.+||+|++ |+++
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~ 38 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-------------------------------------------NKVV 38 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-------------------------------------------CeEE
Confidence 357789999999999999999889999999865 7899
Q ss_pred EEEeHHHHHHH
Q psy15906 283 GLILRSQLIIL 293 (352)
Q Consensus 283 GiItRsdLi~~ 293 (352)
|+|++.|+...
T Consensus 39 G~v~~~~l~~~ 49 (108)
T cd04596 39 GIVTSKDVAGK 49 (108)
T ss_pred EEecHHHHhcc
Confidence 99999999764
No 157
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.98 E-value=0.0032 Score=50.10 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=42.0
Q ss_pred eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEE
Q psy15906 205 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGL 284 (352)
Q Consensus 205 vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGi 284 (352)
+.++.+++++.++.+.+.+.+.+.+||+|++ ++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-------------------------------------------~~~~G~ 39 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-------------------------------------------KRLVGI 39 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-------------------------------------------CCEEEE
Confidence 5678899999999999999999999999875 789999
Q ss_pred EeHHHHHHHH
Q psy15906 285 ILRSQLIILI 294 (352)
Q Consensus 285 ItRsdLi~~L 294 (352)
+++.|+.+.+
T Consensus 40 v~~~dl~~~~ 49 (113)
T cd04615 40 ITRYDVLSYA 49 (113)
T ss_pred EEHHHHHHhh
Confidence 9999998754
No 158
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.96 E-value=0.0027 Score=50.72 Aligned_cols=53 Identities=47% Similarity=0.693 Sum_probs=44.6
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
....++++++++++.+.+.+.+++++||+|+.. .+++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~----------------------------------------~~~~~~G 42 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE----------------------------------------ESPRLVG 42 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCC----------------------------------------CCCEEEE
Confidence 467889999999999999999899999998730 0278999
Q ss_pred EEeHHHHHHHHHh
Q psy15906 284 LILRSQLIILIKH 296 (352)
Q Consensus 284 iItRsdLi~~L~~ 296 (352)
+|+++|+.....+
T Consensus 43 ~v~~~dl~~~~~~ 55 (105)
T cd04591 43 YILRSQLVVALKN 55 (105)
T ss_pred EEeHHHHHHHHHH
Confidence 9999999987754
No 159
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.96 E-value=0.0037 Score=49.55 Aligned_cols=51 Identities=18% Similarity=0.484 Sum_probs=44.8
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.|.+.+...+||+|++ +++++|
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~------------------------------------------~~~~~G 39 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGD------------------------------------------LDNIIG 39 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC------------------------------------------CceEEE
Confidence 57889999999999999998888999999864 278999
Q ss_pred EEeHHHHHHHHHh
Q psy15906 284 LILRSQLIILIKH 296 (352)
Q Consensus 284 iItRsdLi~~L~~ 296 (352)
+++..||++.+.+
T Consensus 40 ~v~~~~l~~~~~~ 52 (111)
T cd04590 40 VVHVKDLLRALAE 52 (111)
T ss_pred EEEHHHHHHHHHc
Confidence 9999999988754
No 160
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.95 E-value=0.0037 Score=50.59 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=42.9
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.+++++||+|+ |+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------------------------------------~~~~G 37 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--------------------------------------------NELVG 37 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--------------------------------------------CeEEE
Confidence 5678999999999999999989999999984 58999
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
++++.|+.+.+.
T Consensus 38 ~v~~~~l~~~~~ 49 (122)
T cd04637 38 VISDRDYLKAIS 49 (122)
T ss_pred EEEHHHHHHHHH
Confidence 999999998765
No 161
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.94 E-value=0.0041 Score=49.64 Aligned_cols=56 Identities=21% Similarity=0.444 Sum_probs=49.6
Q ss_pred ccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCC
Q psy15906 198 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDS 277 (352)
Q Consensus 198 ~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~ 277 (352)
.++|.+++.++.++.++.++...|.+.+...+||++.
T Consensus 2 ~~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~------------------------------------------- 38 (117)
T COG0517 2 KDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD------------------------------------------- 38 (117)
T ss_pred cccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-------------------------------------------
Confidence 3556688999999999999999999999999999985
Q ss_pred CCeEEEEEeHHHHHHHHHhh
Q psy15906 278 PGRLVGLILRSQLIILIKHK 297 (352)
Q Consensus 278 ~g~lvGiItRsdLi~~L~~~ 297 (352)
.+++|+||.+|+.+++...
T Consensus 39 -~~l~Giit~~di~~~~~~~ 57 (117)
T COG0517 39 -GKLVGIITERDILRALAAG 57 (117)
T ss_pred -CEEEEEEEHHHHHHHHhcc
Confidence 3799999999999999654
No 162
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.92 E-value=0.0032 Score=50.43 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=42.0
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.++++++++.++.+.+.+++++.+||+|++ ++++|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G 38 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-------------------------------------------NKVLG 38 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-------------------------------------------CCEEE
Confidence 46788999999999999998889999999875 78999
Q ss_pred EEeHHHHHHH
Q psy15906 284 LILRSQLIIL 293 (352)
Q Consensus 284 iItRsdLi~~ 293 (352)
+|+..|+.+.
T Consensus 39 ~v~~~dl~~~ 48 (111)
T cd04603 39 QVTLSDLLEI 48 (111)
T ss_pred EEEHHHHHhh
Confidence 9999999874
No 163
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.90 E-value=0.0031 Score=53.18 Aligned_cols=51 Identities=24% Similarity=0.465 Sum_probs=44.6
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
++++++++++++.++.+.+.+++++++||+|+ ++++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--------------------------------------------~~~~ 36 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG--------------------------------------------GKLV 36 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC--------------------------------------------CeEE
Confidence 35678999999999999999999999999984 5799
Q ss_pred EEEeHHHHHHHHHhh
Q psy15906 283 GLILRSQLIILIKHK 297 (352)
Q Consensus 283 GiItRsdLi~~L~~~ 297 (352)
|++++.|+...+...
T Consensus 37 G~v~~~dl~~~~~~~ 51 (143)
T cd04634 37 GIVSESDILKLLVTH 51 (143)
T ss_pred EEecHHHHHHHHHhc
Confidence 999999999887543
No 164
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.80 E-value=0.0041 Score=51.02 Aligned_cols=46 Identities=13% Similarity=0.269 Sum_probs=41.2
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.++..+++++++.+.|.+.+.+.+||+|++ |+++|
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G 38 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-------------------------------------------DNFIG 38 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-------------------------------------------CcEEE
Confidence 46788999999999999988888999999875 78999
Q ss_pred EEeHHHHHH
Q psy15906 284 LILRSQLII 292 (352)
Q Consensus 284 iItRsdLi~ 292 (352)
+|++.|+..
T Consensus 39 iv~~~dl~~ 47 (126)
T cd04640 39 VITAVDLLG 47 (126)
T ss_pred EEEHHHHhh
Confidence 999999986
No 165
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.78 E-value=0.006 Score=48.34 Aligned_cols=50 Identities=32% Similarity=0.596 Sum_probs=43.7
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++.+++.+++++++.+.+.+.+++.+||+|+ ++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------------------------------------~~~~ 37 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--------------------------------------------GRVV 37 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--------------------------------------------CEEE
Confidence 46788999999999999999888999999985 4799
Q ss_pred EEEeHHHHHHHHHh
Q psy15906 283 GLILRSQLIILIKH 296 (352)
Q Consensus 283 GiItRsdLi~~L~~ 296 (352)
|+|+++|+.+.+..
T Consensus 38 G~v~~~dl~~~~~~ 51 (110)
T cd04595 38 GIISRRDVEKALRH 51 (110)
T ss_pred EEEEHHHHHHHHhc
Confidence 99999999887643
No 166
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.77 E-value=0.0065 Score=48.07 Aligned_cols=50 Identities=30% Similarity=0.535 Sum_probs=43.5
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++..++++++++++.+.+.+.+++.+||+|+ ++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------------------------------------~~~~ 36 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD--------------------------------------------GKLV 36 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--------------------------------------------CEEE
Confidence 35678899999999999999989999999974 5799
Q ss_pred EEEeHHHHHHHHHh
Q psy15906 283 GLILRSQLIILIKH 296 (352)
Q Consensus 283 GiItRsdLi~~L~~ 296 (352)
|+|++.|++++..+
T Consensus 37 G~v~~~~l~~~~~~ 50 (110)
T cd04588 37 GIVTLSDIAHAIAR 50 (110)
T ss_pred EEEEHHHHHHHHhc
Confidence 99999999987654
No 167
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.76 E-value=0.0045 Score=49.82 Aligned_cols=49 Identities=27% Similarity=0.522 Sum_probs=43.3
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G 38 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-------------------------------------------GRLVG 38 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-------------------------------------------CcEEE
Confidence 46788999999999999999899999999975 78999
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
+|++.++.....
T Consensus 39 ~v~~~~l~~~~~ 50 (121)
T cd04584 39 IVTDRDLRDASP 50 (121)
T ss_pred EEEHHHHHHHhh
Confidence 999999987653
No 168
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.73 E-value=0.0057 Score=48.31 Aligned_cols=50 Identities=26% Similarity=0.476 Sum_probs=43.5
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++.+++++++++++.+.|.+.+.+.+||+|+ ++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------------------------------------~~~~ 36 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD--------------------------------------------GRLV 36 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--------------------------------------------CeEE
Confidence 35678899999999999999888999999985 4799
Q ss_pred EEEeHHHHHHHHHh
Q psy15906 283 GLILRSQLIILIKH 296 (352)
Q Consensus 283 GiItRsdLi~~L~~ 296 (352)
|++++.|+.+....
T Consensus 37 G~v~~~dl~~~~~~ 50 (111)
T cd04612 37 GIVTLADIRRVPAE 50 (111)
T ss_pred EEEEHHHHHHHHhc
Confidence 99999999987654
No 169
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=96.73 E-value=0.0043 Score=49.29 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=43.7
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G 39 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-------------------------------------------GRLVG 39 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-------------------------------------------CCEEE
Confidence 45678899999999999988888999999875 78999
Q ss_pred EEeHHHHHHHHHh
Q psy15906 284 LILRSQLIILIKH 296 (352)
Q Consensus 284 iItRsdLi~~L~~ 296 (352)
+|++.++.+.+.+
T Consensus 40 ~v~~~~i~~~~~~ 52 (114)
T cd04604 40 IFTDGDLRRALEK 52 (114)
T ss_pred EechHHHHHHHhc
Confidence 9999999988764
No 170
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=96.70 E-value=0.0047 Score=62.45 Aligned_cols=64 Identities=17% Similarity=0.371 Sum_probs=57.0
Q ss_pred Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906 192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK 269 (352)
Q Consensus 192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~ 269 (352)
+.+.+|+++|++ ++.+++.+.+++++.+.+.+++|+.+||.+++
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~---------------------------------- 248 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD---------------------------------- 248 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----------------------------------
Confidence 678899999985 78899999999999999999999999999943
Q ss_pred CCCCcCCCCCeEEEEEeHHHHHHHHHhh
Q psy15906 270 GDASRKDSPGRLVGLILRSQLIILIKHK 297 (352)
Q Consensus 270 ~~~~~l~~~g~lvGiItRsdLi~~L~~~ 297 (352)
...++|+|.-.||+..+.+.
T Consensus 249 --------~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 249 --------LDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred --------CCcEEEEEEHHHHHHHHhcC
Confidence 25799999999999988765
No 171
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.69 E-value=0.003 Score=59.22 Aligned_cols=42 Identities=10% Similarity=0.038 Sum_probs=39.0
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
..+++++|.+++.++++++++.++.+.+.+.+.+.+||+|++
T Consensus 219 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 260 (268)
T TIGR00393 219 KSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDH 260 (268)
T ss_pred cCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCC
Confidence 457999999999999999999999999999999999999875
No 172
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.65 E-value=0.0083 Score=47.33 Aligned_cols=49 Identities=14% Similarity=0.356 Sum_probs=42.9
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.++..+||+|+ ++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--------------------------------------------~~~~G 37 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--------------------------------------------GRPLG 37 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--------------------------------------------CEEEE
Confidence 4678899999999999999888999999974 58999
Q ss_pred EEeHHHHHHHHHh
Q psy15906 284 LILRSQLIILIKH 296 (352)
Q Consensus 284 iItRsdLi~~L~~ 296 (352)
+++++||.+....
T Consensus 38 ~v~~~~l~~~~~~ 50 (111)
T cd04611 38 IVTERDILRLLAS 50 (111)
T ss_pred EEeHHHHHHHHhc
Confidence 9999999987753
No 173
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.60 E-value=0.0082 Score=47.18 Aligned_cols=49 Identities=31% Similarity=0.487 Sum_probs=42.9
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.+++.+||+|+ ++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------------------------------------------~~~~G 37 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--------------------------------------------GRVVG 37 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--------------------------------------------CeeEE
Confidence 4677899999999999999999999999984 47999
Q ss_pred EEeHHHHHHHHHh
Q psy15906 284 LILRSQLIILIKH 296 (352)
Q Consensus 284 iItRsdLi~~L~~ 296 (352)
++++.|+.+.+..
T Consensus 38 ~v~~~dl~~~~~~ 50 (110)
T cd04609 38 SIDESDLLDALIE 50 (110)
T ss_pred EEeHHHHHHHHhc
Confidence 9999999997643
No 174
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.59 E-value=0.0078 Score=47.76 Aligned_cols=32 Identities=13% Similarity=0.387 Sum_probs=28.5
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
+++.+++++++++++.+.+.+++++.+||+|+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~ 32 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN 32 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC
Confidence 35678999999999999999999999999974
No 175
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.58 E-value=0.0049 Score=63.48 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=36.7
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
.+++.|.+++++++++++++++.+++.+.+++++||+|++
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~ 136 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDG 136 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCC
Confidence 4678888999999999999999999999999999999874
No 176
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=96.57 E-value=0.0078 Score=48.18 Aligned_cols=48 Identities=25% Similarity=0.452 Sum_probs=42.5
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.++.+++++.++.+.+.+.+++.+||+|+ ++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------------------------------------~~~~G 37 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--------------------------------------------GKLVG 37 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--------------------------------------------CeEEE
Confidence 5678899999999999999989999999984 57999
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
+|++.|+...+.
T Consensus 38 ~i~~~~l~~~~~ 49 (122)
T cd04585 38 IVTDRDLKLASP 49 (122)
T ss_pred EEeHHHHHHhhh
Confidence 999999998764
No 177
>KOG2550|consensus
Probab=96.57 E-value=0.0026 Score=62.74 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=54.1
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA 272 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 272 (352)
....+.|+|+++.++.+...+++++-++|++++...+||||++
T Consensus 169 ~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~------------------------------------- 211 (503)
T KOG2550|consen 169 NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDK------------------------------------- 211 (503)
T ss_pred ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccC-------------------------------------
Confidence 4667899999988999999999999999999999999999987
Q ss_pred CcCCCCCeEEEEEeHHHHHHHHH
Q psy15906 273 SRKDSPGRLVGLILRSQLIILIK 295 (352)
Q Consensus 273 ~~l~~~g~lvGiItRsdLi~~L~ 295 (352)
|.+|-+|+|+||.++-.
T Consensus 212 ------gelva~~~rtDl~k~~~ 228 (503)
T KOG2550|consen 212 ------GELVAMLSRTDLMKNRD 228 (503)
T ss_pred ------CceeeeeehhhhhhhcC
Confidence 78999999999987753
No 178
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.57 E-value=0.0064 Score=47.93 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=29.2
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
+++.++..++++.++.+.+.+.++..+||+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~ 34 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD 34 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC
Confidence 456788999999999999998899999999875
No 179
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.56 E-value=0.008 Score=47.02 Aligned_cols=46 Identities=28% Similarity=0.609 Sum_probs=40.5
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.+++.+||+| + ++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-------------------------------------------~~~~G 37 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-------------------------------------------GKLVG 37 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-------------------------------------------CEEEE
Confidence 567789999999999999988889999997 3 68999
Q ss_pred EEeHHHHHHH
Q psy15906 284 LILRSQLIIL 293 (352)
Q Consensus 284 iItRsdLi~~ 293 (352)
+++++|+..+
T Consensus 38 iv~~~~l~~~ 47 (105)
T cd04599 38 IITSRDVRRA 47 (105)
T ss_pred EEehHHhhcc
Confidence 9999999864
No 180
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.55 E-value=0.0092 Score=47.58 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=42.2
Q ss_pred eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEE
Q psy15906 205 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGL 284 (352)
Q Consensus 205 vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGi 284 (352)
..++++++++.++.+.+.+.++..+||+|++ ++++|+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G~ 40 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-------------------------------------------GRLLGT 40 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-------------------------------------------CCEEEE
Confidence 4578899999999999998888999999875 789999
Q ss_pred EeHHHHHHHHH
Q psy15906 285 ILRSQLIILIK 295 (352)
Q Consensus 285 ItRsdLi~~L~ 295 (352)
++.+|+.+++.
T Consensus 41 v~~~dl~~~~~ 51 (113)
T cd04607 41 VTDGDIRRALL 51 (113)
T ss_pred EEcHHHHHHHh
Confidence 99999987664
No 181
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.53 E-value=0.013 Score=46.54 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=42.7
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++.+++++++++++.+.+.+.+++.+||+|+ ++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------------------------------------~~~~ 36 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN--------------------------------------------EKPV 36 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--------------------------------------------CEEE
Confidence 35678899999999999999888999999984 3799
Q ss_pred EEEeHHHHHHHHH
Q psy15906 283 GLILRSQLIILIK 295 (352)
Q Consensus 283 GiItRsdLi~~L~ 295 (352)
|++++.|++..+.
T Consensus 37 G~v~~~dl~~~~~ 49 (112)
T cd04802 37 GIITERDLVKKVV 49 (112)
T ss_pred EEEEHHHHHHHHh
Confidence 9999999998664
No 182
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.52 E-value=0.0058 Score=61.26 Aligned_cols=58 Identities=12% Similarity=0.275 Sum_probs=50.3
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK 275 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l 275 (352)
.+++++.+.+.++++++++++++..+.++.+. +||||++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~---------------------------------------- 376 (400)
T PRK10070 338 GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDED---------------------------------------- 376 (400)
T ss_pred chhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCC----------------------------------------
Confidence 45667777788999999999999999886666 9999876
Q ss_pred CCCCeEEEEEeHHHHHHHHHhh
Q psy15906 276 DSPGRLVGLILRSQLIILIKHK 297 (352)
Q Consensus 276 ~~~g~lvGiItRsdLi~~L~~~ 297 (352)
|+++|+|+|.+++++|..+
T Consensus 377 ---~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 377 ---QQYVGIISKGMLLRALDRE 395 (400)
T ss_pred ---CcEEEEEEHHHHHHHHHhc
Confidence 8999999999999999754
No 183
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.50 E-value=0.012 Score=46.54 Aligned_cols=49 Identities=22% Similarity=0.370 Sum_probs=42.3
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++.+++.+.+++++.+.+.+.+++.+||+|+ ++++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--------------------------------------------~~~~ 36 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD--------------------------------------------GRLV 36 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--------------------------------------------CEEE
Confidence 35678899999999999998888899999974 5799
Q ss_pred EEEeHHHHHHHHH
Q psy15906 283 GLILRSQLIILIK 295 (352)
Q Consensus 283 GiItRsdLi~~L~ 295 (352)
|+|+++|+...+.
T Consensus 37 G~v~~~~l~~~~~ 49 (111)
T cd04800 37 GIVTDRDLRNRVV 49 (111)
T ss_pred EEEEhHHHHHHHh
Confidence 9999999987554
No 184
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.41 E-value=0.012 Score=47.28 Aligned_cols=48 Identities=21% Similarity=0.493 Sum_probs=42.5
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.++.+++++.++.+.+.+.+...+||+|+ |+++|
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--------------------------------------------~~~~G 37 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--------------------------------------------GKLVG 37 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--------------------------------------------CEEEE
Confidence 5678899999999999999888999999984 58999
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
++++.++.+.+.
T Consensus 38 ~v~~~~l~~~~~ 49 (121)
T cd04633 38 IVTEKDIADALR 49 (121)
T ss_pred EEchHHHHHhhh
Confidence 999999988765
No 185
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.34 E-value=0.0089 Score=61.69 Aligned_cols=38 Identities=8% Similarity=0.146 Sum_probs=33.8
Q ss_pred ccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 198 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 198 ~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
+..|.+++++++++++++++.+++.++++.++||+|++
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~ 140 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETG 140 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCC
Confidence 33377899999999999999999999999999999874
No 186
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.34 E-value=0.013 Score=46.98 Aligned_cols=50 Identities=22% Similarity=0.480 Sum_probs=41.4
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.++..+||+|+.+ .+++++|
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~----------------------------------------~~~~~~G 42 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGK----------------------------------------SGGKLLG 42 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCC----------------------------------------cCCEEEE
Confidence 467788999999999999888889999998630 0279999
Q ss_pred EEeHHHHHHH
Q psy15906 284 LILRSQLIIL 293 (352)
Q Consensus 284 iItRsdLi~~ 293 (352)
+|+..|+...
T Consensus 43 ~v~~~dl~~~ 52 (114)
T cd04602 43 IVTSRDIDFL 52 (114)
T ss_pred EEEhHHhhhh
Confidence 9999998753
No 187
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.31 E-value=0.0098 Score=59.80 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=51.4
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK 275 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l 275 (352)
+++++|+ ++.++++++++.++++.|++++.+-.+|+|+.
T Consensus 256 ~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~---------------------------------------- 294 (408)
T TIGR03520 256 DWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY---------------------------------------- 294 (408)
T ss_pred CHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC----------------------------------------
Confidence 3566665 56799999999999999999999999999975
Q ss_pred CCCCeEEEEEeHHHHHHHHHhhhc
Q psy15906 276 DSPGRLVGLILRSQLIILIKHKIY 299 (352)
Q Consensus 276 ~~~g~lvGiItRsdLi~~L~~~~~ 299 (352)
|.++|+||.+|++..+-..+.
T Consensus 295 ---G~~~GiVT~eDileeivgei~ 315 (408)
T TIGR03520 295 ---GGTSGLVTLEDIIEEIVGDIS 315 (408)
T ss_pred ---CCEEEEEEHHHHHHHHhCCCC
Confidence 789999999999999965544
No 188
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.30 E-value=0.016 Score=45.63 Aligned_cols=47 Identities=30% Similarity=0.513 Sum_probs=41.1
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.++++++++.++.+.+.+.+++.+||++++ ++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~g 38 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-------------------------------------------GELVG 38 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-------------------------------------------CcEEE
Confidence 45678899999999999998889999999875 68999
Q ss_pred EEeHHHHHHH
Q psy15906 284 LILRSQLIIL 293 (352)
Q Consensus 284 iItRsdLi~~ 293 (352)
++++.+++..
T Consensus 39 ~v~~~~l~~~ 48 (106)
T cd04638 39 IITRKDLLRN 48 (106)
T ss_pred EEEHHHHHhc
Confidence 9999999753
No 189
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.18 E-value=0.017 Score=46.28 Aligned_cols=48 Identities=31% Similarity=0.578 Sum_probs=41.4
Q ss_pred CeEEecCCCCHHHHHHHHHhCC-CCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATS-HNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~-~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
++.+++++++++++.+.+...+ ++.+||+|+ |+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--------------------------------------------~~~~ 37 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--------------------------------------------GRPV 37 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--------------------------------------------CeeE
Confidence 5667889999999999998876 889999985 4799
Q ss_pred EEEeHHHHHHHHH
Q psy15906 283 GLILRSQLIILIK 295 (352)
Q Consensus 283 GiItRsdLi~~L~ 295 (352)
|+|++.|+..++.
T Consensus 38 G~v~~~~l~~~~~ 50 (119)
T cd04598 38 GLIMREALMELLS 50 (119)
T ss_pred EEEEHHHHHHHHh
Confidence 9999999987664
No 190
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.16 E-value=0.024 Score=44.92 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=40.8
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++.+++++++++++.+.+.+.+.+.+||+|+ ++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------------------------------------------~~~~G 37 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--------------------------------------------NKLVG 37 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--------------------------------------------CEEEE
Confidence 5678899999999999998888899999974 57999
Q ss_pred EEeHHHHHHHH
Q psy15906 284 LILRSQLIILI 294 (352)
Q Consensus 284 iItRsdLi~~L 294 (352)
+|+++|++..+
T Consensus 38 ~v~~~dl~~~~ 48 (113)
T cd04587 38 IFTSKDIALRV 48 (113)
T ss_pred EEEhHHHHHHH
Confidence 99999998544
No 191
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.14 E-value=0.02 Score=45.71 Aligned_cols=49 Identities=18% Similarity=0.389 Sum_probs=40.0
Q ss_pred CeEEecCCCCHHHHHHHHHhCC-CCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATS-HNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~-~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
++.++++++++.++.+.+.+.+ +..+||+| + ++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~-------------------------------------------~~~~ 37 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-K-------------------------------------------GRLL 37 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-C-------------------------------------------CcEE
Confidence 4667899999999999998777 66677766 3 6899
Q ss_pred EEEeHHHHHHHHHh
Q psy15906 283 GLILRSQLIILIKH 296 (352)
Q Consensus 283 GiItRsdLi~~L~~ 296 (352)
|+++..|++..+..
T Consensus 38 G~v~~~dl~~~~~~ 51 (115)
T cd04620 38 GIFTERDIVRLTAI 51 (115)
T ss_pred EEEeHHHHHHHHhc
Confidence 99999999987643
No 192
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.00 E-value=0.012 Score=46.65 Aligned_cols=42 Identities=31% Similarity=0.499 Sum_probs=35.6
Q ss_pred ecCCCCHHHHHHHHHhCCC-----CeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 208 LRPLETVGNIIDVLKATSH-----NGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 208 l~~~~tV~e~~~~L~~t~~-----~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+.++++++++.+.+.++++ ..+||+|++ ++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-------------------------------------------~~~~ 38 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-------------------------------------------GRLL 38 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-------------------------------------------CCEE
Confidence 5678999999999987763 689999865 7899
Q ss_pred EEEeHHHHHH
Q psy15906 283 GLILRSQLII 292 (352)
Q Consensus 283 GiItRsdLi~ 292 (352)
|+|++++++.
T Consensus 39 G~v~~~~l~~ 48 (109)
T cd04606 39 GVVSLRDLLL 48 (109)
T ss_pred EEEEHHHHhc
Confidence 9999999875
No 193
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=95.98 E-value=0.039 Score=43.66 Aligned_cols=48 Identities=10% Similarity=0.296 Sum_probs=41.6
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++++++++++++++.+.+.+.+++.+||+|+ ++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------------------------------------~~~~G 37 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--------------------------------------------DPRLG 37 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--------------------------------------------CeEEE
Confidence 4678899999999999999888889999874 46899
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
+++..|+...+.
T Consensus 38 ~v~~~~l~~~~~ 49 (111)
T cd04589 38 IVTRTDLLDAVL 49 (111)
T ss_pred EEEHHHHHHHHH
Confidence 999999998764
No 194
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.80 E-value=0.045 Score=43.27 Aligned_cols=48 Identities=13% Similarity=0.348 Sum_probs=39.4
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
.+.++++++++.++.+.+.+.+.+.++|.+ + |+++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~-------------------------------------------~~~~G 37 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-R-------------------------------------------GELVG 37 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-C-------------------------------------------CEEEE
Confidence 456789999999999999877777776654 3 68999
Q ss_pred EEeHHHHHHHHH
Q psy15906 284 LILRSQLIILIK 295 (352)
Q Consensus 284 iItRsdLi~~L~ 295 (352)
+++++|+.+.+.
T Consensus 38 ~v~~~dl~~~~~ 49 (112)
T cd04625 38 LLTFREVLQAMA 49 (112)
T ss_pred EEEHHHHHHHHH
Confidence 999999998764
No 195
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=95.54 E-value=0.053 Score=42.62 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=26.0
Q ss_pred EEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 206 ICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 206 v~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
.+++++++++++.+.+.+.++..+||+|+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~ 32 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY 32 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC
Confidence 46789999999999999999999999984
No 196
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.46 E-value=0.058 Score=42.14 Aligned_cols=32 Identities=44% Similarity=0.798 Sum_probs=28.0
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDV 234 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~ 234 (352)
+++.+++.+.+++++.+.+.+.++..+||+|+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~ 33 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN 33 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence 46778899999999999998888889999874
No 197
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=95.28 E-value=0.0092 Score=55.08 Aligned_cols=62 Identities=19% Similarity=0.481 Sum_probs=53.9
Q ss_pred ccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCC
Q psy15906 193 SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG 270 (352)
Q Consensus 193 ~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~ 270 (352)
..++|+|+|.+ ..++++.+.++.++++.+.++.|+.|||+.++
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed----------------------------------- 109 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----------------------------------- 109 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC-----------------------------------
Confidence 46789999985 57899999999999999999999999999876
Q ss_pred CCCcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906 271 DASRKDSPGRLVGLILRSQLIILIKH 296 (352)
Q Consensus 271 ~~~~l~~~g~lvGiItRsdLi~~L~~ 296 (352)
...+.||+.-.||++.+..
T Consensus 110 -------kD~v~GIL~AKDLL~~~~~ 128 (293)
T COG4535 110 -------KDHVEGILLAKDLLPFMRS 128 (293)
T ss_pred -------chhhhhhhhHHHHHHHhcC
Confidence 2468899999999987754
No 198
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=94.67 E-value=0.034 Score=54.60 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=40.5
Q ss_pred Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
+++++|+|+|.+ ++..+..+++.+++++.+.++.|+.+||-.++
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~ 242 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD 242 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCC
Confidence 678999999985 68899999999999999999999999999776
No 199
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=94.55 E-value=0.039 Score=52.58 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=42.1
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT 238 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~ 238 (352)
..-+++.+|++++.+++++++..+++-.+.+..++++||+|+++.+
T Consensus 313 ~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~l 358 (382)
T COG3448 313 RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKL 358 (382)
T ss_pred CCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcE
Confidence 4668999999999999999999999999999999999999987443
No 200
>KOG0474|consensus
Probab=94.50 E-value=0.0082 Score=62.12 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHH-------h---cCCCCcCChhHHHHHHHHHHHHhhhchh
Q psy15906 64 VVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQS-------I---FPEATWIDPGKYALIGAAAQLGGVVRMT 133 (352)
Q Consensus 64 ~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~-------~---~p~~~~~~~~~~alvG~aa~l~g~~r~p 133 (352)
++.|++-.+.+.+.|...|--.|++-.||++|..+++--.. + |-+. -+-.-+.-+|+||-.+++.|||
T Consensus 189 L~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnD--rdrRD~VscGaAAGVaAAF~AP 266 (762)
T KOG0474|consen 189 LIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRND--RDRRDLVSCGAAAGVAAAFRAP 266 (762)
T ss_pred hHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhccc--chhhhhhhcchHHhHHHHhCCC
Confidence 37799999999999999999999999999999998764321 1 2222 3556799999999999999999
Q ss_pred HHHHHHHHHhhCC---chhhHHHHHHHHHHHHHHh
Q psy15906 134 ISLTIILIEATGN---ISFGLPLMLTLITAKWIGD 165 (352)
Q Consensus 134 ls~~vi~~ElTg~---~~~~lp~m~~~~~a~~v~~ 165 (352)
+..+++.+|=--+ ..++.=+.++++++.++-+
T Consensus 267 vGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 267 VGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred ccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 9999999986443 3466667777777766655
No 201
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.03 E-value=0.12 Score=51.50 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=44.6
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK 275 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l 275 (352)
++.+ +.+++.++++++++.++.....++.+ .+||+|+
T Consensus 327 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~----------------------------------------- 363 (382)
T TIGR03415 327 EVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN----------------------------------------- 363 (382)
T ss_pred chhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-----------------------------------------
Confidence 3445 55678889999999999998877664 4888873
Q ss_pred CCCCeEEEEEeHHHHHHHHHh
Q psy15906 276 DSPGRLVGLILRSQLIILIKH 296 (352)
Q Consensus 276 ~~~g~lvGiItRsdLi~~L~~ 296 (352)
|+++|+|+|.+++.+|.+
T Consensus 364 ---~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 364 ---GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred ---CeEEEEEeHHHHHHHHhc
Confidence 689999999999999864
No 202
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=93.58 E-value=0.099 Score=50.61 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=39.2
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
..+|+|+|++++.++++++++.++.+.|.+++.+.+||+|++
T Consensus 268 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~ 309 (326)
T PRK10892 268 QASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADGD 309 (326)
T ss_pred cCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCC
Confidence 467999999999999999999999999999999999999865
No 203
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=93.57 E-value=0.085 Score=44.31 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=32.6
Q ss_pred ccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 200 VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 200 IM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
.|.++++++++++++.++.+.|.+++.+.+||+|++
T Consensus 83 ~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 83 GQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred ccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 345788999999999999999999999999999876
No 204
>KOG1764|consensus
Probab=92.72 E-value=0.18 Score=50.35 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=47.7
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++..+..++++.++++.|.+.+.+++||||.. |+.+|
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-------------------------------------------g~~v~ 274 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDEN-------------------------------------------GKKVG 274 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-------------------------------------------Cceec
Confidence 68889999999999999999999999999986 56699
Q ss_pred EEeHHHHHHHHHhhhc
Q psy15906 284 LILRSQLIILIKHKIY 299 (352)
Q Consensus 284 iItRsdLi~~L~~~~~ 299 (352)
.+++.|+..+.....+
T Consensus 275 ~~s~~Dv~~l~~~~~~ 290 (381)
T KOG1764|consen 275 NYSRFDVIHLAREGTY 290 (381)
T ss_pred ceehhhhhhhhhcCcc
Confidence 9999999999876655
No 205
>KOG1764|consensus
Probab=92.11 E-value=0.38 Score=48.04 Aligned_cols=51 Identities=31% Similarity=0.443 Sum_probs=47.0
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
.++++++.+++.++.+.+..++.|.+.|||++ |+++|
T Consensus 311 ~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~-------------------------------------------~~l~G 347 (381)
T KOG1764|consen 311 GVVTCRPTSTLAEVIDKLVAHRVHRLWVVDED-------------------------------------------GVLVG 347 (381)
T ss_pred ccEEEeecchHHHHHHHHHhcCceEEEEEcCC-------------------------------------------CcEEE
Confidence 47889999999999999999999999999986 78999
Q ss_pred EEeHHHHHHHHHhh
Q psy15906 284 LILRSQLIILIKHK 297 (352)
Q Consensus 284 iItRsdLi~~L~~~ 297 (352)
+||=+|++..+...
T Consensus 348 vvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 348 VISLSDILSYLVLT 361 (381)
T ss_pred EeeHHHHHHHHHhC
Confidence 99999999999754
No 206
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=91.92 E-value=0.19 Score=51.14 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=40.1
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT 238 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~ 238 (352)
+.+++++|++++.+++++++++++.+.++++++..+||||+++.+
T Consensus 194 ~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~l 238 (449)
T TIGR00400 194 EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRL 238 (449)
T ss_pred CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeE
Confidence 347999999999999999999999999999999999999976443
No 207
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=91.66 E-value=0.19 Score=47.13 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=40.7
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
.+.+|+|+|+++++++..++.+.|+.++|..++...+-|+|++
T Consensus 232 ~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~ 274 (294)
T COG2524 232 LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSN 274 (294)
T ss_pred ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccC
Confidence 4679999999999999999999999999999999999999965
No 208
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=91.55 E-value=0.25 Score=47.56 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=38.7
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
..+++++|++++.++.+++++.++.+.|.+++.+.+||||++
T Consensus 262 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 303 (321)
T PRK11543 262 TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDEN 303 (321)
T ss_pred CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC
Confidence 346899999999999999999999999999999999999975
No 209
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.28 E-value=0.26 Score=50.91 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=40.4
Q ss_pred ccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906 193 SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT 238 (352)
Q Consensus 193 ~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~ 238 (352)
.+.+|+++|++ +++++++++++.++.++|.+++.+.+||||+++.+
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~L 206 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNL 206 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeE
Confidence 35679999996 78999999999999999999999999999975343
No 210
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.64 E-value=0.31 Score=50.10 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=39.7
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT 238 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~ 238 (352)
.+++++|+++++++++++++.+++++|.+++.+.+||||+++.+
T Consensus 148 ~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~l 191 (479)
T PRK07807 148 TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRL 191 (479)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeE
Confidence 46999999999999999999999999999999999999975343
No 211
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.64 E-value=0.5 Score=45.97 Aligned_cols=53 Identities=21% Similarity=0.376 Sum_probs=42.9
Q ss_pred ccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCC
Q psy15906 200 VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPG 279 (352)
Q Consensus 200 IM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g 279 (352)
.+.+++.++.+++++.+++....+. ...+||||++ +
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~-~~p~aVvde~-------------------------------------------~ 367 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQA-PCPVAVVDED-------------------------------------------G 367 (386)
T ss_pred cccccccccCccchHHHHHHHHhcC-CCceeEEcCC-------------------------------------------C
Confidence 3445667888888998888877654 4568999876 8
Q ss_pred eEEEEEeHHHHHHHHHh
Q psy15906 280 RLVGLILRSQLIILIKH 296 (352)
Q Consensus 280 ~lvGiItRsdLi~~L~~ 296 (352)
+++|+|+|.+++.+|.+
T Consensus 368 r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 368 RYVGIISRGELLEALAR 384 (386)
T ss_pred cEEEEecHHHHHHHHhc
Confidence 99999999999999875
No 212
>KOG2550|consensus
Probab=90.50 E-value=0.21 Score=49.60 Aligned_cols=51 Identities=24% Similarity=0.462 Sum_probs=42.7
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
.+++++.|+.++.++++.-......++||.++... .+||+
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~----------------------------------------~~KLv 155 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKR----------------------------------------GSKLV 155 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcc----------------------------------------cceeE
Confidence 45678899999999999999999999999876511 37899
Q ss_pred EEEeHHHHHHH
Q psy15906 283 GLILRSQLIIL 293 (352)
Q Consensus 283 GiItRsdLi~~ 293 (352)
|+||.+|+-..
T Consensus 156 G~vtsrdi~f~ 166 (503)
T KOG2550|consen 156 GIITSRDIQFL 166 (503)
T ss_pred EEEehhhhhhh
Confidence 99999998665
No 213
>PRK11573 hypothetical protein; Provisional
Probab=90.22 E-value=0.82 Score=46.11 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=47.3
Q ss_pred cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906 203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV 282 (352)
Q Consensus 203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv 282 (352)
+++..+++..++.++++.|++++.+-.-|||+. |...
T Consensus 262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy-------------------------------------------G~~~ 298 (413)
T PRK11573 262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY-------------------------------------------GDIQ 298 (413)
T ss_pred cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC-------------------------------------------CCeE
Confidence 367789999999999999999888888888875 7899
Q ss_pred EEEeHHHHHHHHHhhhcc
Q psy15906 283 GLILRSQLIILIKHKIYK 300 (352)
Q Consensus 283 GiItRsdLi~~L~~~~~~ 300 (352)
|+||-.|++..+-..+..
T Consensus 299 GiVTleDilEeivGei~d 316 (413)
T PRK11573 299 GLVTVEDILEEIVGDFTT 316 (413)
T ss_pred EEeeHHHHHHHHhCCCCc
Confidence 999999999999766543
No 214
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=90.19 E-value=0.35 Score=49.65 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=39.8
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT 238 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~ 238 (352)
.+++++|+++++++++++++.++.++|.+++.+.+||||+++.+
T Consensus 146 ~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~L 189 (475)
T TIGR01303 146 TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTL 189 (475)
T ss_pred CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeE
Confidence 46999999999999999999999999999999999999865333
No 215
>KOG0475|consensus
Probab=86.99 E-value=0.26 Score=51.39 Aligned_cols=101 Identities=12% Similarity=0.026 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHh
Q psy15906 64 VVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEA 143 (352)
Q Consensus 64 ~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~El 143 (352)
+++|-++.+++.++|.+=|--.|+.-++.+.|.++..+.....-+. .--.-+-...|||-.+.+.+||+..+++-+|-
T Consensus 181 l~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e--~~~reilsAaaAaGvavaFgAPIGGVlFslEe 258 (696)
T KOG0475|consen 181 LLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNE--AKKREILSAAAAAGVAVAFGAPIGGVLFSLEE 258 (696)
T ss_pred HhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccch--hHHHHHHHHHhhccchhhcCCccceeeeehhh
Confidence 5779999999999999999999999999999999888776553221 11122344455555667899999999999996
Q ss_pred hCC---chhhHHHHHHHHHHHHHHhh
Q psy15906 144 TGN---ISFGLPLMLTLITAKWIGDF 166 (352)
Q Consensus 144 Tg~---~~~~lp~m~~~~~a~~v~~~ 166 (352)
--. ...+.--.+++++|-.+.+.
T Consensus 259 v~~~fp~ktlw~sff~aLsAv~~L~~ 284 (696)
T KOG0475|consen 259 VSYYFPLKTLWRSFFCALSAVTALRS 284 (696)
T ss_pred hhhcCCccchHHHHHHHHHHHHHHee
Confidence 432 12233335555666555544
No 216
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=86.32 E-value=2.2 Score=43.25 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=46.1
Q ss_pred CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906 204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG 283 (352)
Q Consensus 204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG 283 (352)
++..+++..++.++++.|++.+.+---|+|+. |...|
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy-------------------------------------------G~~~G 316 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEY-------------------------------------------GGVEG 316 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC-------------------------------------------CCeEE
Confidence 67889999999999999999887777777765 88999
Q ss_pred EEeHHHHHHHHHhhhc
Q psy15906 284 LILRSQLIILIKHKIY 299 (352)
Q Consensus 284 iItRsdLi~~L~~~~~ 299 (352)
+||-.|++..+-..+.
T Consensus 317 lVTleDIiEeIvGei~ 332 (429)
T COG1253 317 LVTLEDIIEEIVGEIP 332 (429)
T ss_pred EeEHHHHHHHHhCCCc
Confidence 9999999999977554
No 217
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=85.92 E-value=0.3 Score=39.97 Aligned_cols=42 Identities=7% Similarity=0.009 Sum_probs=34.4
Q ss_pred ccccccccccCeEEecCCCCHHHHHHHHHh---------CCCCeEEEEeCC
Q psy15906 194 NITARIVKSHPVICLRPLETVGNIIDVLKA---------TSHNGFPIVDVE 235 (352)
Q Consensus 194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~---------t~~~~fPVVd~~ 235 (352)
+.+++++|++++.++.+++++.++.+++.. .+...+||+|++
T Consensus 58 ~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~ 108 (124)
T cd04608 58 SDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQ 108 (124)
T ss_pred CCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccc
Confidence 568999999999999999999999996533 256777888764
No 218
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=84.53 E-value=1.3 Score=45.25 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=39.9
Q ss_pred ccccccccc-cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906 194 NITARIVKS-HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT 238 (352)
Q Consensus 194 ~i~V~dIM~-~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~ 238 (352)
..+++++|+ ++++++++++++.++.+.|.+++.+.+||||+++.+
T Consensus 142 ~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~l 187 (450)
T TIGR01302 142 GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGEL 187 (450)
T ss_pred CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcE
Confidence 457899999 589999999999999999999999999999986443
No 219
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=80.63 E-value=2.1 Score=44.08 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=39.8
Q ss_pred ccccccccc-cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906 194 NITARIVKS-HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT 238 (352)
Q Consensus 194 ~i~V~dIM~-~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~ 238 (352)
..+++++|+ ++++++++++++.++.+.|.+++.+.+||+|++..+
T Consensus 146 ~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~l 191 (486)
T PRK05567 146 SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRL 191 (486)
T ss_pred CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcE
Confidence 347899998 789999999999999999999999999999986443
No 220
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=79.11 E-value=1.6 Score=44.45 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=41.9
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT 238 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~ 238 (352)
....++|+|.++++++.++++-+++.+++++++.-..||||++++.
T Consensus 194 ~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~L 239 (451)
T COG2239 194 PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRL 239 (451)
T ss_pred cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCce
Confidence 4568899999999999999999999999999999999999988444
No 221
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=77.83 E-value=4 Score=38.79 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=39.1
Q ss_pred CcccccccccccCeE----EecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCC
Q psy15906 192 SSNITARIVKSHPVI----CLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSS 267 (352)
Q Consensus 192 l~~i~V~dIM~~~vv----~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~ 267 (352)
+...++.+.|.+... .+.....-.+.+..+.......+||||++
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~-------------------------------- 293 (309)
T COG1125 246 LSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDED-------------------------------- 293 (309)
T ss_pred cchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCC--------------------------------
Confidence 345567777765332 12223334445555566677889999986
Q ss_pred CCCCCCcCCCCCeEEEEEeHHHHHHH
Q psy15906 268 HKGDASRKDSPGRLVGLILRSQLIIL 293 (352)
Q Consensus 268 ~~~~~~~l~~~g~lvGiItRsdLi~~ 293 (352)
|+++|.|||.+|+..
T Consensus 294 -----------g~~~G~vt~~~l~~~ 308 (309)
T COG1125 294 -----------GRPLGTVTRADLLDE 308 (309)
T ss_pred -----------CcEeeEEEHHHHhhh
Confidence 899999999999764
No 222
>KOG0476|consensus
Probab=77.19 E-value=1.1 Score=47.88 Aligned_cols=82 Identities=16% Similarity=0.097 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCCh---hHHHHHHHHHHHHhhhchhHHHHHHH
Q psy15906 64 VVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDP---GKYALIGAAAQLGGVVRMTISLTIIL 140 (352)
Q Consensus 64 ~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~---~~~alvG~aa~l~g~~r~pls~~vi~ 140 (352)
++.|.+...+++|+|+|=|--.|-.-+++....+++.+.+-.+.+. +.+. .-...+|+|--.|.+..||++++++-
T Consensus 191 lvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g~-~enesR~~EmLaaaCAVGVactFsAPiGgVLfS 269 (931)
T KOG0476|consen 191 LVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGGF-FENESRNMEMLAAACAVGVACTFSAPIGGVLFS 269 (931)
T ss_pred HHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhcccc-ccCcchHHHHHHHHhhhhheeeecCccceeEEE
Confidence 5789999999999999999999999999999999988875333221 1222 12233444444556667999999999
Q ss_pred HHhhCC
Q psy15906 141 IEATGN 146 (352)
Q Consensus 141 ~ElTg~ 146 (352)
+|.|-.
T Consensus 270 IEvTS~ 275 (931)
T KOG0476|consen 270 IEVTST 275 (931)
T ss_pred EEEeee
Confidence 999863
No 223
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=76.03 E-value=18 Score=35.99 Aligned_cols=83 Identities=8% Similarity=0.066 Sum_probs=60.0
Q ss_pred ccccc--cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906 198 RIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK 275 (352)
Q Consensus 198 ~dIM~--~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l 275 (352)
.|+++ ..+..++..+++.+-+..+.+++.+---|||+-
T Consensus 268 ~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY---------------------------------------- 307 (423)
T COG4536 268 EDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY---------------------------------------- 307 (423)
T ss_pred hHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEecc----------------------------------------
Confidence 44443 356788999999999999988887877888875
Q ss_pred CCCCeEEEEEeHHHHHHHHHhhhcccCCC-------CCC-------CCcCHHHHhhh-CCCCCC
Q psy15906 276 DSPGRLVGLILRSQLIILIKHKIYKENQN-------WPD-------DQLSSEIFHAE-YPRYPS 324 (352)
Q Consensus 276 ~~~g~lvGiItRsdLi~~L~~~~~~~~~~-------~~~-------~~~~~~~~~~~-~~~~p~ 324 (352)
|.+.|+||-.|++..+-...- ++.. +|. +..+..++++. -+++|+
T Consensus 308 ---G~i~GLVTLEDIlEEIVGdft-de~d~~~~ev~~q~dgs~iidGs~~iRdlNr~l~W~Lp~ 367 (423)
T COG4536 308 ---GDIQGLVTLEDILEEIVGDFT-DEHDTLAKEVIPQSDGSFIIDGSANVRDLNRALDWNLPD 367 (423)
T ss_pred ---CcEEeeeeHHHHHHHHhcccc-ccCcccchhhcccCCCcEEEeCCCcHHHHHHhcCCCCCC
Confidence 889999999999998865443 2111 332 25567778776 567775
No 224
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=74.71 E-value=3.4 Score=36.28 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=38.7
Q ss_pred CCCcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 190 PLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 190 ~~l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
+..+.++|+++|..++.++++++++..+.++|.. |++.-|++++
T Consensus 125 e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~--~~AVlV~e~G 168 (187)
T COG3620 125 ESIRSLRVREVMGEPFPTVSPDESLNVISQLLEE--HPAVLVVENG 168 (187)
T ss_pred cchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhh--CCeEEEEeCC
Confidence 3457889999999999999999999999999986 7888898766
No 225
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=72.40 E-value=4.6 Score=42.01 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=40.9
Q ss_pred cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCC
Q psy15906 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEP 236 (352)
Q Consensus 193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~ 236 (352)
...+|+++|+.+++++...+-+-|+.-.|..++.+.+||++++.
T Consensus 212 ~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq 255 (610)
T COG2905 212 KTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQ 255 (610)
T ss_pred cccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecCCe
Confidence 46789999999999999999999999999999999999999873
No 226
>KOG4267|consensus
Probab=72.28 E-value=9.7 Score=31.14 Aligned_cols=67 Identities=22% Similarity=0.160 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHH
Q psy15906 85 IPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWI 163 (352)
Q Consensus 85 ~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v 163 (352)
+|||.-|..+|.++|..-..+..+. ..-...++.|.+++|++++..- +-.| ..+.|.-+++.++-..
T Consensus 28 i~SL~aGl~~G~l~g~~s~~l~~~~--~~~~~~~l~~~s~~L~gvmg~R-------~~~s---~K~mPaglva~~s~~m 94 (110)
T KOG4267|consen 28 IPSLAAGLLFGALAGYGSYLLSRDK--KGGSLVALGGTSAALLGVMGQR-------FYRS---RKIMPAGLVAGISLLM 94 (110)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCC--CcCchhHHHHHHHHHHHHHhhh-------hhcc---CCccchHHHHHHHHHH
Confidence 6999999999999988776665332 1133566666788888877654 2223 4466775555554433
No 227
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=70.27 E-value=5.5 Score=39.25 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=41.9
Q ss_pred CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906 192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM 237 (352)
Q Consensus 192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~ 237 (352)
..+.+...+|++++.++.+.+++..+.+.|-=.+..-.||+|++..
T Consensus 246 ~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~ 291 (432)
T COG4109 246 KPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNT 291 (432)
T ss_pred CCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCce
Confidence 5677889999999999999999999999999889999999998843
No 228
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=68.18 E-value=13 Score=37.41 Aligned_cols=59 Identities=10% Similarity=0.078 Sum_probs=46.8
Q ss_pred ccccccccccCeE---EecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCC
Q psy15906 194 NITARIVKSHPVI---CLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG 270 (352)
Q Consensus 194 ~i~V~dIM~~~vv---~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~ 270 (352)
-.++.++|.+... ...++....++++.|...+.....|+|++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 317 (400)
T PRK10070 273 VFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG----------------------------------- 317 (400)
T ss_pred ccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-----------------------------------
Confidence 3577888865332 23466788999999999999999999976
Q ss_pred CCCcCCCCCeEEEEEeHHHHHHHHH
Q psy15906 271 DASRKDSPGRLVGLILRSQLIILIK 295 (352)
Q Consensus 271 ~~~~l~~~g~lvGiItRsdLi~~L~ 295 (352)
++++|+|+..++.....
T Consensus 318 --------~~~~g~~~~~~~~~~~~ 334 (400)
T PRK10070 318 --------NKFVGAVSIDSLKTALT 334 (400)
T ss_pred --------CcEEEEEeHHHHHhhhh
Confidence 78999999999987654
No 229
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=53.98 E-value=41 Score=33.34 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=41.7
Q ss_pred cccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCe
Q psy15906 201 KSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGR 280 (352)
Q Consensus 201 M~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~ 280 (352)
|........++.+..++.+.+...+.+...|+|++ ++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~ 284 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQ-------------------------------------------NK 284 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhcCCceEEEEcCC-------------------------------------------CC
Confidence 33344455667789999999998888888999876 78
Q ss_pred EEEEEeHHHHHHHHHh
Q psy15906 281 LVGLILRSQLIILIKH 296 (352)
Q Consensus 281 lvGiItRsdLi~~L~~ 296 (352)
+.|.|+++++...++.
T Consensus 285 ~~g~~~~~~~~~~~~~ 300 (363)
T TIGR01186 285 LVGVVDVESIKQARKK 300 (363)
T ss_pred EEEEEeHHHHHHHhhc
Confidence 9999999999876653
No 230
>KOG4112|consensus
Probab=47.50 E-value=56 Score=26.05 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy15906 87 CLLTGAAWGRLFSLFLQSI 105 (352)
Q Consensus 87 ~l~iGa~~G~~~g~~~~~~ 105 (352)
++.+||..|.++|-+.+++
T Consensus 31 ilti~aiVg~i~Gf~~Qql 49 (101)
T KOG4112|consen 31 ILTIGAIVGFIYGFAQQQL 49 (101)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567888888888877654
No 231
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.14 E-value=53 Score=26.93 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHhhhc
Q psy15906 92 AAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVR 131 (352)
Q Consensus 92 a~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g~~r 131 (352)
-++|..+|.++.+++.... .---.|.++|+.|-+=-+.|
T Consensus 56 ilVGa~iG~llD~~agTsP-wglIv~lllGf~AG~lnv~R 94 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSP-WGLIVFLLLGFGAGVLNVLR 94 (116)
T ss_pred HHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555544321 22356889999886655555
No 232
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=42.43 E-value=34 Score=34.52 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=30.5
Q ss_pred cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235 (352)
Q Consensus 195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~ 235 (352)
.++.++|++++.++++++++.++.+.|.+. + .|||+++
T Consensus 400 ~~v~~im~~~~~~v~~~~~l~~a~~~~~~~--~-~~vV~~~ 437 (454)
T TIGR01137 400 DAVSKVMSKKFIQIGEGEKLSDLSKFLEKN--S-SAIVTEE 437 (454)
T ss_pred CCHHHhcCCCCeEECCcCcHHHHHHHHHHC--C-eeEEEEC
Confidence 468899999999999999999999999864 3 3555544
No 233
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=42.35 E-value=70 Score=30.09 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=47.8
Q ss_pred ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK 275 (352)
Q Consensus 196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l 275 (352)
.++++. ++.+.++..-++..+++-++..+.+---|||+-
T Consensus 134 ~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDEf---------------------------------------- 172 (293)
T COG4535 134 DIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEF---------------------------------------- 172 (293)
T ss_pred cHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEecc----------------------------------------
Confidence 455554 567788999999999999999888888888875
Q ss_pred CCCCeEEEEEeHHHHHHHHHhhh
Q psy15906 276 DSPGRLVGLILRSQLIILIKHKI 298 (352)
Q Consensus 276 ~~~g~lvGiItRsdLi~~L~~~~ 298 (352)
|-+-|+||-.|++..+-..+
T Consensus 173 ---GgVsGLVTIEDiLEqIVGdI 192 (293)
T COG4535 173 ---GGVSGLVTIEDILEQIVGDI 192 (293)
T ss_pred ---CCeeeeEEHHHHHHHHhccc
Confidence 77899999999998876443
No 234
>COG3329 Predicted permease [General function prediction only]
Probab=39.34 E-value=1.9e+02 Score=28.20 Aligned_cols=72 Identities=21% Similarity=0.334 Sum_probs=47.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhC-CchhhHHHHHHH
Q psy15906 83 VFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATG-NISFGLPLMLTL 157 (352)
Q Consensus 83 ~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg-~~~~~lp~m~~~ 157 (352)
.+.|.. .|.++|.++..+......-. .....+-.+..|+..|++.-.|+++++-.+|-.| .|+-..|.|++.
T Consensus 70 ~v~~~~-~~~aL~~li~~ia~f~l~kl--~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lal 142 (372)
T COG3329 70 MVLPVA-LGVALGFLIVFIAYFLLRKL--PKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLAL 142 (372)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHc--cccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 366766 67777777765554332111 0112344455677788888889999999999887 577777777764
No 235
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=35.96 E-value=88 Score=33.53 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHh
Q psy15906 94 WGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGG 128 (352)
Q Consensus 94 ~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g 128 (352)
+|.++|..+..|....-+..-...+++|.-++++|
T Consensus 591 l~ai~glf~~Yw~~l~lFqTL~~~~~lg~~t~~~G 625 (636)
T PF05817_consen 591 LGAIEGLFFLYWLGLNLFQTLPYLAVLGAVTFLSG 625 (636)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 66666665555432110111234566666666665
No 236
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=35.40 E-value=39 Score=25.26 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q psy15906 84 FIPCLLTGAAWGRLFSLFLQ 103 (352)
Q Consensus 84 f~P~l~iGa~~G~~~g~~~~ 103 (352)
|.-.+++|++.|.++|.++.
T Consensus 1 F~~g~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFA 20 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 55567888888888887764
No 237
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=35.39 E-value=3.1e+02 Score=26.00 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q psy15906 85 IPCLLTGAAWGRLFSLFLQSI 105 (352)
Q Consensus 85 ~P~l~iGa~~G~~~g~~~~~~ 105 (352)
..++.+|..||.++..+=..+
T Consensus 46 ~~ai~~glvwgl~I~~lDR~i 66 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFI 66 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556667777776665544333
No 238
>COG2370 HupE Hydrogenase/urease accessory protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.80 E-value=2.1e+02 Score=25.84 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=47.2
Q ss_pred HHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChh-HHHHHHHHHHHHhhhchhHHHHHHHHHhh
Q psy15906 74 TYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG-KYALIGAAAQLGGVVRMTISLTIILIEAT 144 (352)
Q Consensus 74 t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~-~~alvG~aa~l~g~~r~pls~~vi~~ElT 144 (352)
++..|+.-|.+.|.-++++++....=.+...-.|. +.++ .-.+++++.+++=..|.|.++++.+.-..
T Consensus 63 a~aag~~~~~~~p~aFV~~mi~G~llgl~gv~LPf---vE~~Ia~Sv~~~Gllla~~~rlp~~~~~~l~gif 131 (201)
T COG2370 63 ALAAGIRAGWLVPLAFVATMILGALLGLSGVHLPF---VEPGIAASVLGLGLLLALAARLPLPAVAALIGIF 131 (201)
T ss_pred HHhcchhhhHHhHHHHHHHHHHHHHHhhccCCCCc---chHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 34445888999999999997644433222222332 4454 56788999999999999999998875443
No 239
>PF07869 DUF1656: Protein of unknown function (DUF1656); InterPro: IPR012451 The proteins in this entry have no known function and belong to the AaeX family.
Probab=31.07 E-value=63 Score=23.18 Aligned_cols=26 Identities=38% Similarity=0.639 Sum_probs=22.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHh
Q psy15906 80 SGGVFIPCLLTGAAWGRLFSLFLQSI 105 (352)
Q Consensus 80 ~gG~f~P~l~iGa~~G~~~g~~~~~~ 105 (352)
-+|++.|.+++-+..+.+...+++.+
T Consensus 5 i~Gvy~P~ll~~~~~A~~l~~~l~~l 30 (58)
T PF07869_consen 5 IGGVYFPPLLVYALLALLLTLLLRRL 30 (58)
T ss_pred EEeeeHhHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999988888777765
No 240
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=30.25 E-value=2.8e+02 Score=29.24 Aligned_cols=97 Identities=23% Similarity=0.315 Sum_probs=49.4
Q ss_pred HHHHHhcCCccccchhHH--HHHHHHHHHHHHHHHHhcCCCCcCC-hhHHHHHHHHHHHHhhhchh---------HHHHH
Q psy15906 71 SVWTYGVSVSGGVFIPCL--LTGAAWGRLFSLFLQSIFPEATWID-PGKYALIGAAAQLGGVVRMT---------ISLTI 138 (352)
Q Consensus 71 t~~t~g~g~~gG~f~P~l--~iGa~~G~~~g~~~~~~~p~~~~~~-~~~~alvG~aa~l~g~~r~p---------ls~~v 138 (352)
|++-..-+-.|..+.=++ ++|..+|.++|.++..++++....- ......+|...+++...|.+ +|+++
T Consensus 33 tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~p~l~~~~lal~i~~c~~~~~~~~~~~~y~~~lag~T~~i 112 (650)
T PF04632_consen 33 TVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQSPLLFLLALALWIGLCLYLSLLDRNFRSYAFMLAGYTAAI 112 (650)
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 333334445566655555 7888999999988887776531111 11122345555555434433 33444
Q ss_pred HHHHhhCCchh--------hHHHHHHHHHHHHHHhhc
Q psy15906 139 ILIEATGNISF--------GLPLMLTLITAKWIGDFF 167 (352)
Q Consensus 139 i~~ElTg~~~~--------~lp~m~~~~~a~~v~~~~ 167 (352)
+.+-..++.+. ..-++++++++..|+.++
T Consensus 113 v~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l~ 149 (650)
T PF04632_consen 113 VALPAVGNPEQVFDLALWRVLEILIGILCATLVSMLF 149 (650)
T ss_pred HHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433333221 133455566666666554
No 241
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=29.72 E-value=2.9e+02 Score=22.75 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=20.6
Q ss_pred hhhchhHHHHHHHHHhhCC---ch-hhHHHHHHHHHHHHHHhh
Q psy15906 128 GVVRMTISLTIILIEATGN---IS-FGLPLMLTLITAKWIGDF 166 (352)
Q Consensus 128 g~~r~pls~~vi~~ElTg~---~~-~~lp~m~~~~~a~~v~~~ 166 (352)
...+-|-.++-++.=+.+. +. .+.|+++.+++--.++-.
T Consensus 67 ~~~HPPA~Atall~~l~~~~~~~~~~~~pVl~g~~il~~~a~~ 109 (120)
T PF04982_consen 67 RTVHPPAGATALLAVLGGASLGWGFVLIPVLLGSLILVVVALL 109 (120)
T ss_pred cCCCCchhhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444443 23 566777766665555543
No 242
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=26.58 E-value=4.3e+02 Score=22.98 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=37.6
Q ss_pred HhcCCccccchhHHHHHHHHHHHHHHHHHHh-----cCCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhC
Q psy15906 75 YGVSVSGGVFIPCLLTGAAWGRLFSLFLQSI-----FPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATG 145 (352)
Q Consensus 75 ~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~-----~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg 145 (352)
+|.+...+.|+=++++| ++|..+++....- .|.....-||.+|.-+|.++..+-.-.-++........++
T Consensus 52 ~g~~~~~atfiaa~~vg-~lg~~~sr~~k~p~~v~~vpaIiPlVPG~~ay~am~~~v~~~~~~~~~~~~~~~~~a~ 126 (156)
T COG3610 52 FGFSIVVATFIAAFVVG-CLGNLLSRRYKTPAKVFTVPAIIPLVPGGLAYQAMIALVEGDYLTGLSEGLETTLLAG 126 (156)
T ss_pred cCCcHHHHHHHHHHHHH-HHHHHHHHHhcCChhhhecchhhhcCCcHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 34445555666666555 4455555544311 2222235688888888888877655434444444444433
No 243
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=25.62 E-value=1.1e+02 Score=21.02 Aligned_cols=37 Identities=24% Similarity=0.038 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHH
Q psy15906 89 LTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLG 127 (352)
Q Consensus 89 ~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~ 127 (352)
.+||.+|..++..+.. .+.. ....-..+++||.-++.
T Consensus 5 iiGa~vGg~l~~~lg~-~~~~-~~~~~i~aviGAiill~ 41 (48)
T PF04226_consen 5 IIGAFVGGWLFGLLGI-NGGG-SWGSFIVAVIGAIILLF 41 (48)
T ss_pred hHHHHHHHHHHHHhcc-cCCc-hHHHHHHHHHHHHHHHH
Confidence 3677777777766554 1111 12233566677665543
No 244
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=25.24 E-value=1.3e+02 Score=28.11 Aligned_cols=48 Identities=17% Similarity=0.422 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcCChhHHHH---HHHHHHHHhhhchhHHHH
Q psy15906 89 LTGAAWGRLFSLFLQSIFPEATWIDPGKYAL---IGAAAQLGGVVRMTISLT 137 (352)
Q Consensus 89 ~iGa~~G~~~g~~~~~~~p~~~~~~~~~~al---vG~aa~l~g~~r~pls~~ 137 (352)
.+|..+|.++-.++..+.....+.+|-++|+ +|.|+++++... ++++.
T Consensus 149 i~GTvfGtiffsllas~~a~~~~fhP~ALAMasGvGSgSMMaAa~~-aL~~~ 199 (241)
T PF11299_consen 149 IIGTVFGTIFFSLLASLLASLGIFHPYALAMASGVGSGSMMAAASG-ALAAA 199 (241)
T ss_pred eehhhHHHHHHHHHHHHHHhccCCCHHHHHHHcCCcHHHHHHHHHH-HHHHH
Confidence 4677777776666655433333467766554 567777766653 34433
No 245
>PHA03054 IMV membrane protein; Provisional
Probab=23.55 E-value=3.3e+02 Score=20.56 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=16.0
Q ss_pred CchhhHHHHhccCcH-------HHHHHHhcCC
Q psy15906 27 GEYNTLAALWLQVPE-------KSVRTMLHDP 51 (352)
Q Consensus 27 g~y~~~~~l~~~~~~-------~~i~~l~~~~ 51 (352)
..|..+.+.|..+++ +.+++.+.+.
T Consensus 3 kLya~ifGvF~ss~d~Df~~Fi~vV~sVl~dk 34 (72)
T PHA03054 3 KLYAAIFGVFMGSPEDDLTDFIEIVKSVLSDE 34 (72)
T ss_pred hHHHHHHHHhhCCchHHHHHHHHHHHHHHcCC
Confidence 356777777777776 4556666553
No 246
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=20.19 E-value=5.7e+02 Score=22.05 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHH
Q psy15906 57 VFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTG 91 (352)
Q Consensus 57 ~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iG 91 (352)
+...+...+.|.++..+.. |+.|.|++..+
T Consensus 42 ~~~a~~v~~lR~~l~~l~~-----G~~~s~~f~~S 71 (148)
T PF07456_consen 42 FKEALLVALLRILLGSLLF-----GTLFSPSFLFS 71 (148)
T ss_pred hhHHHHHHHHHHHHHHHHh-----CcchHHHHHHH
Confidence 3456666777888777754 45778888765
Done!