RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15906
(352 letters)
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 214 bits (546), Expect = 3e-64
Identities = 68/313 (21%), Positives = 121/313 (38%), Gaps = 60/313 (19%)
Query: 53 GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI 112
FG L + + F+L + G+ + GVF+P L GA +GRL+ ++ +F A I
Sbjct: 314 DHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNA--I 371
Query: 113 DPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLY 172
PG YA++GAAA GV R +S +I+ E TG I +P++++++ A +G+ F LY
Sbjct: 372 VPGSYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLY 430
Query: 173 DIHIQLSGIPLLAWDPPPLSSNITARIV--KSHPVICLRPLETVGNIIDVL-KATSHNGF 229
+ + + +P + S +TAR + L P +I +L K + F
Sbjct: 431 ETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVF 490
Query: 230 PIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQ 289
P++ D+ G L+G I R +
Sbjct: 491 PVI-------------------------------------------DANGYLLGAISRKE 507
Query: 290 LIILIKHKIYKENQNWPDDQ-----------LSSEIFHAEYPRYPSVNDLVVSENDRSFT 338
++ ++H + + + + E E P + + T
Sbjct: 508 IVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPT 567
Query: 339 VKLNLFMNTSPFS 351
L + + SP
Sbjct: 568 SSLVVPCDVSPIV 580
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 87.5 bits (217), Expect = 3e-19
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 53 GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI 112
G F + L V + ++ + GG+F P L G G F + +FP+ +
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYH-L 384
Query: 113 DPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGL 171
+ G +A+ G A L +R ++ I+++E T N LP+++T + A + F + L
Sbjct: 385 EAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPL 444
Query: 172 YD 173
Y
Sbjct: 445 YS 446
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 85.5 bits (212), Expect = 1e-18
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 53 GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI 112
+L + FLL++ YG GG+F P L + + +FP
Sbjct: 318 SQSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQI-P 376
Query: 113 DPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGL 171
+P A+ G A + VR ++ ++ IE T N LPL++T + A + + + +
Sbjct: 377 EPAVMAIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPI 436
Query: 172 YD 173
Y
Sbjct: 437 YT 438
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 52.2 bits (125), Expect = 3e-08
Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 53/156 (33%)
Query: 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDS 255
R + + TV ++ ++ T+++GFP+V
Sbjct: 18 KPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVV---------------------- 55
Query: 256 HKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIF 315
RLVG +LR LII I++ K++ S F
Sbjct: 56 -------------------SRESQRLVGFVLRRDLIISIENARKKQDGVVST---SIIYF 93
Query: 316 HAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
P P T+KL ++ SPF+
Sbjct: 94 TEHSPPLPPYTPP---------TLKLRNILDLSPFT 120
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 38.1 bits (88), Expect = 0.001
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
S ++ +H + L + ++ V+ +T +P+V+
Sbjct: 10 SHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVE 51
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain,
CBS domains, ION CH regulatory subunit, transport
protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Length = 250
Score = 37.8 bits (86), Expect = 0.003
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 182 PLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEP 236
P L+W NI + V + T G+++ VL+ T FP VD
Sbjct: 1 PELSWSSA-NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.017
Identities = 53/328 (16%), Positives = 94/328 (28%), Gaps = 108/328 (32%)
Query: 3 YSIDDCRPLGEDPTEHAVQMY----CEDGEYNTLAAL-------W---LQVPEKSVRTML 48
Y + + LG P E + G + A+ W K++ +
Sbjct: 249 YVVT-AKLLGFTPGELRSYLKGATGHSQG---LVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 49 HDPKG-----AFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPC---LLTGAAWGRLFSL 100
G A+ SL ++ S+ +P ++ ++
Sbjct: 305 F--IGVRCYEAYPNTSLPPSILED----------SLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 101 FLQ--SIFPEATWID------PGKYALIGAAAQLGGVVRMTISLTIILIEATGNIS---- 148
+ S P ++ + G L G+ +L + + S
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL---TLRKAKAPSGLDQSRIPF 409
Query: 149 ----------FGLPLMLTLITA-------KWIGDFFTEGLYDIHIQLSG----IPLL--- 184
F LP + + D + L ++ + IP+
Sbjct: 410 SERKLKFSNRF-LP-----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 185 -AWDPPPLSSNITARIVKSHPVICLRPL--ETVGNIIDVLKATSHNGFPIVD-------- 233
D LS +I+ RIV I P+ ET KAT H I+D
Sbjct: 464 DGSDLRVLSGSISERIV---DCIIRLPVKWETT----TQFKAT-H----ILDFGPGGASG 511
Query: 234 VEPMTKHSSDG--AEQSSAGSTDSHKGD 259
+ +T + DG AG+ D + D
Sbjct: 512 LGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Score = 35.8 bits (82), Expect = 0.025
Identities = 30/228 (13%), Positives = 65/228 (28%), Gaps = 79/228 (34%)
Query: 52 KGAFGVFSLSVF-----VVTYF--LLSVW-TYG------VSVSGGVFIPCLLTGAAWGRL 97
+G + + +F YF L ++ TY + S + T ++
Sbjct: 151 EGNAQLVA--IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 98 FSLFLQSIFPEATWID-----PGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLP 152
F+ L + W++ P K L+ IS +I + +
Sbjct: 209 FTQGLNIL----EWLENPSNTPDKDYLLSIP----------ISCPLIGVIQLAHY----- 249
Query: 153 LMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLE 212
++TAK +G + P L S + S ++ +
Sbjct: 250 ----VVTAKLLG---------------------FTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 213 TVG-------NIIDVLKAT------SHNGFPIVDVEP-MTKHSSDGAE 246
++ + + +P + P + + S + E
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Score = 30.8 bits (69), Expect = 0.85
Identities = 31/198 (15%), Positives = 55/198 (27%), Gaps = 70/198 (35%)
Query: 3 YSIDDCRPLGEDPTEHAV-----------QMY-------CEDGEYNTLAALWLQVPEKSV 44
+SI D + +P + + Y DG+ T ++ ++ E S
Sbjct: 1659 FSILDI--VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK-IFKEINEHST 1715
Query: 45 RTMLHDPKGAFGVFSLS--------VFVVTYFLLSVW-TYGVSVSGGVFIPCLLTG---- 91
KG LS + ++ + G+ + F G
Sbjct: 1716 SYTFRSEKGL-----LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA-----GHSLG 1765
Query: 92 -----AAWGRLFSL------------FLQSIFPEATW---------IDPGKYALIGAAAQ 125
A+ + S+ +Q P I+PG+ A +
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 126 LGGVVRMTISLTIILIEA 143
L VV T L+E
Sbjct: 1826 LQYVVERVGKRTGWLVEI 1843
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 33.0 bits (76), Expect = 0.048
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
NI + V + VI + E V + + + P++D
Sbjct: 6 KNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVID 46
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 32.4 bits (74), Expect = 0.19
Identities = 5/43 (11%), Positives = 14/43 (32%)
Query: 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235
S + + + I+++ + P+VD+
Sbjct: 91 STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN 133
Score = 27.8 bits (62), Expect = 6.1
Identities = 2/41 (4%), Positives = 10/41 (24%)
Query: 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+ + L + +G+ + + +
Sbjct: 18 QGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN 58
Score = 27.0 bits (60), Expect = 9.1
Identities = 5/45 (11%), Positives = 14/45 (31%)
Query: 189 PPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
L ++ S V + + + ++ P++D
Sbjct: 150 KDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID 194
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 31.5 bits (72), Expect = 0.23
Identities = 4/32 (12%), Positives = 8/32 (25%)
Query: 202 SHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
S + + I+D + V
Sbjct: 23 SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVA 54
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 30.6 bits (70), Expect = 0.25
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 202 SHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
S P I ++ +L + N PIVD
Sbjct: 8 SKPPITAHSNISIMEAAKILIKHNINHLPIVD 39
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 29.8 bits (68), Expect = 0.61
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+ TAR + + V C+ ET+ ++ PI
Sbjct: 6 TMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICG 46
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 30.5 bits (70), Expect = 0.74
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 21/64 (32%)
Query: 116 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 165
K ++G A +L + + I E ISF G+ L ++
Sbjct: 2 KVIVLGSSHGGYEAVEEL---LNLHPDAEIQWYEKGDFISFLSAGMQL--------YLEG 50
Query: 166 FFTE 169
+
Sbjct: 51 KVKD 54
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 30.5 bits (70), Expect = 0.75
Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 21/64 (32%)
Query: 116 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 165
K +IG AA + I LI+ + + GL +
Sbjct: 4 KIVIIGASFAGISAAIAS---RKKYPQAEISLIDKQATVGYLSGGLSA--------YFNH 52
Query: 166 FFTE 169
E
Sbjct: 53 TINE 56
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 29.7 bits (67), Expect = 0.76
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 202 SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 235
+ V ++P + + + VL T ++ P++D
Sbjct: 20 ADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS 53
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.79
Identities = 56/324 (17%), Positives = 97/324 (29%), Gaps = 92/324 (28%)
Query: 65 VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFL----QSIFPEATWIDPGKYALI 120
VT FL + T +S+ LT L +L Q + E +P + ++I
Sbjct: 277 VTDFLSAATTTHISL---DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 121 GAA----------------AQLGGVVRMTI-------------SLTIILIEATGNISFGL 151
+ +L ++ ++ L++ A +I L
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTIL 391
Query: 152 PLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPL 211
L+LI W D + + +L L+ P + +I P I L
Sbjct: 392 ---LSLI---W-FDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--------PSIYLELK 436
Query: 212 ETVGNIIDVLKATSHNGFPIVD-VEPMTKHSSDGAEQSSAGSTD----SHKGDTSHKRDS 266
+ N + H IVD SD D SH G H
Sbjct: 437 VKLEN-----EYALHR--SIVDHYNIPKTFDSDDL---IPPYLDQYFYSHIG---H---- 479
Query: 267 SH--KGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFH--AEYPRY 322
H + + + R+V L R ++ KI ++ W Y Y
Sbjct: 480 -HLKNIEHPERMTLFRMVFLDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 323 PSVNDLVVSENDRSFTVKLNLFMN 346
+ +ND + +N ++
Sbjct: 534 -------ICDNDPKYERLVNAILD 550
Score = 28.7 bits (63), Expect = 4.2
Identities = 30/261 (11%), Positives = 72/261 (27%), Gaps = 70/261 (26%)
Query: 120 IGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLS 179
L ISL +++ + +L+ K++ +
Sbjct: 275 KQVTDFLSAATTTHISLDHH------SMTLTPDEVKSLL-LKYLD-----------CRPQ 316
Query: 180 GIPLLAWDPPPLSSNITARIVKSHP--------VICLRPLETVGNIIDVLKATSHNG--- 228
+P P +I A ++ V C + + + ++VL+ +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 229 ----FPI-VDVEPMT------KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDS 277
FP + + + HK S + K+S
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV---------NKLHKY-SLVEKQ--PKES 424
Query: 278 PGRLVGLILRSQLIILIK---HKI----YKENQNWPDDQLSSE-----IFHAEYPRYPSV 325
+ + L ++ + + H+ Y + + D L + + +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS--HIGH--- 479
Query: 326 NDLVVSENDRSFTVKLNLFMN 346
L E+ T+ +F++
Sbjct: 480 -HLKNIEHPERMTLFRMVFLD 499
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 30.1 bits (68), Expect = 0.95
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+ N R + VI L+ + I+ + G PIV+
Sbjct: 81 AINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVN 122
Score = 29.0 bits (65), Expect = 2.2
Identities = 5/36 (13%), Positives = 17/36 (47%)
Query: 198 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+I ++ ++ + P T+ + + + P+V+
Sbjct: 7 KIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVN 42
Score = 27.8 bits (62), Expect = 4.6
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+N+ + VI + + + I +++ P+VD
Sbjct: 221 TNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVD 261
Score = 27.0 bits (60), Expect = 8.9
Identities = 7/51 (13%), Positives = 16/51 (31%)
Query: 183 LLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
++ + N + VI P E + ++ + P+V
Sbjct: 136 VIRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS 186
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 30.2 bits (69), Expect = 0.95
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 21/64 (32%)
Query: 116 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 165
K ++G A Q + + E NISF G+ L ++G
Sbjct: 2 KVIVVGCTHAGTFAVKQT---IADHPDADVTAYEMNDNISFLSCGIAL--------YLGK 50
Query: 166 FFTE 169
Sbjct: 51 EIKN 54
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 29.6 bits (67), Expect = 0.96
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 202 SHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+ + L + +L ++ P+V
Sbjct: 24 AKNLAVLIDTHNADHATLLLSQMTYTRVPVVT 55
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 29.6 bits (67), Expect = 1.00
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 202 SHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+ L T+ + +++A PIVD
Sbjct: 12 TRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD 43
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 30.1 bits (69), Expect = 1.2
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 21/64 (32%)
Query: 116 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 165
K ++G A+Q+ R+ II+ E ++SF LP IG+
Sbjct: 3 KIVVVGAVAGGATCASQI---RRLDKESDIIIFEKDRDMSFANCALPY--------VIGE 51
Query: 166 FFTE 169
+
Sbjct: 52 VVED 55
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 29.8 bits (68), Expect = 1.3
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 21/64 (32%)
Query: 116 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 165
Y +IG AA Q+ VR + ++ +E S+ GLP I
Sbjct: 38 NYVIIGGDAAGMSAAMQI---VRNDENANVVTLEKGEIYSYAQCGLPY--------VISG 86
Query: 166 FFTE 169
Sbjct: 87 AIAS 90
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 28.6 bits (65), Expect = 1.3
Identities = 3/39 (7%), Positives = 12/39 (30%)
Query: 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+ V V + ++ +++ + +V
Sbjct: 1 MRVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK 39
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 29.9 bits (68), Expect = 1.4
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 21/64 (32%)
Query: 116 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 165
K ++G AA+L R++ II++E ISF GLP +IG
Sbjct: 38 KIVVVGGVAGGASVAARL---RRLSEEDEIIMVERGEYISFANCGLPY--------YIGG 86
Query: 166 FFTE 169
TE
Sbjct: 87 VITE 90
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 28.9 bits (65), Expect = 1.5
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 193 SNITARIV--KSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+ T + ++P +V + +++L G P++D
Sbjct: 2 TGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVID 44
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 29.5 bits (66), Expect = 1.7
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 190 PLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
++ + R V+ ET+ II+ L + +VD
Sbjct: 260 SVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD 303
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 29.5 bits (67), Expect = 1.7
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 21/64 (32%)
Query: 116 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 165
K +IG AAA+ R++ + II+ E +SF GLP I
Sbjct: 3 KILIIGGVAGGASAAARA---RRLSETAEIIMFERGEYVSFANCGLPY--------HISG 51
Query: 166 FFTE 169
+
Sbjct: 52 EIAQ 55
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 29.4 bits (67), Expect = 2.1
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 21/64 (32%)
Query: 116 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 165
+IG AA + R+ + +I+ IS+ G+P ++
Sbjct: 5 HVVVIGAVALGPKAACRF---KRLDPEAHVTMIDQASRISYGGCGIPY--------YVSG 53
Query: 166 FFTE 169
+
Sbjct: 54 EVSN 57
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol,
protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Length = 323
Score = 29.2 bits (65), Expect = 2.2
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 190 PLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+ + R V + + I+D ++ + F +VD
Sbjct: 257 SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD 300
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain;
LCMV, MHC class I, immune escape, immune system; 1.99A
{Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A
1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A
1nez_A*
Length = 348
Score = 29.0 bits (65), Expect = 2.5
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 169 EGLYDIHIQLSGIP---LLAWDPPPLSSNITARIV 200
E Y H+ G+P L W+PPP + + A +
Sbjct: 254 EQYYTCHVYHQGLPEPLTLRWEPPPSTVSNMATVA 288
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein;
peptide-MHC complex, immunoglobulin fold system; 2.70A
{Synthetic}
Length = 443
Score = 29.0 bits (65), Expect = 2.6
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 169 EGLYDIHIQLSGIP---LLAWDPPPLSSNITARIV 200
E Y H+ G+P L W + +
Sbjct: 399 EQNYTCHVHHKGLPEPLTLRWAAAGGTGGLNDIFE 433
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 27.9 bits (63), Expect = 2.6
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+ VI + + +I V+ + +VD
Sbjct: 2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD 42
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 28.2 bits (63), Expect = 2.8
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 199 IVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
++++ V ++ + + + VL T + P++D
Sbjct: 20 MIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD 54
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 28.0 bits (63), Expect = 2.9
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 190 PLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
++ + R V+ ET+ II+ L + +VD
Sbjct: 88 SVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVD 131
Score = 27.6 bits (62), Expect = 3.9
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 174 IHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
H P + L +I + +R V + + + P+VD
Sbjct: 3 HHHHHHEFPKPEFMSKSLEE---LQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD 59
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 27.5 bits (62), Expect = 3.4
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+ R V + + I+D ++ + F +VD
Sbjct: 83 LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD 121
Score = 27.5 bits (62), Expect = 3.6
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 198 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
I+ + + V ++I +L + PI+D
Sbjct: 14 NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID 49
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 27.7 bits (62), Expect = 3.7
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 199 IVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
++ S V ++ + + + VL + ++ P++D
Sbjct: 21 MISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLD 55
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 28.2 bits (63), Expect = 3.7
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 202 SHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+ + TV + ++ N + D
Sbjct: 20 TQDFPMVEESATVRECLHRMRQYQTNECIVKD 51
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 28.6 bits (65), Expect = 3.8
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 21/61 (34%)
Query: 116 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 165
K +IG AA+++ R+ + + EAT +S G+P +
Sbjct: 5 KVVIIGGGAAGMSAASRV---KRLKPEWDVKVFEATEWVSHAPCGIPY--------VVEG 53
Query: 166 F 166
Sbjct: 54 L 54
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 27.7 bits (62), Expect = 3.8
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 202 SHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+ + TV + + ++ G + D
Sbjct: 16 NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKD 47
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
PSI-2, protein structure initiative; HET: EPE; 1.66A
{Chlorobium tepidum tls}
Length = 128
Score = 27.4 bits (61), Expect = 4.0
Identities = 5/42 (11%), Positives = 15/42 (35%)
Query: 192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
++++T + + + L A+ P++D
Sbjct: 2 NASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLD 43
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central
glycolytic G regulator, transcription; 1.95A {Bacillus
subtilis} PDB: 3fwr_A* 3fws_A*
Length = 159
Score = 27.3 bits (61), Expect = 4.7
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
+ + +S PV+ + +V + I + +VD
Sbjct: 15 KKLQVKDFQSIPVV-IHENVSVYDAICTMFLEDVGTLFVVD 54
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 28.3 bits (64), Expect = 4.9
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 18/63 (28%)
Query: 116 KYALIGAAAQLGGVVRMTI------SLTIILIEATGNISF---GLPLMLTLITAKWIGDF 166
K ++GA G T+ + I++ + NISF G+ L WIG+
Sbjct: 37 KIVVVGANH-AGTACIKTMLTNYGDANEIVVFDQNSNISFLGAGMAL--------WIGEQ 87
Query: 167 FTE 169
Sbjct: 88 IAG 90
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 27.2 bits (59), Expect = 7.7
Identities = 5/41 (12%), Positives = 19/41 (46%)
Query: 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
S ++ ++ + + V ++ + T ++ +P++D
Sbjct: 184 SLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVID 224
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.419
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,347,084
Number of extensions: 317010
Number of successful extensions: 543
Number of sequences better than 10.0: 1
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 63
Length of query: 352
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 257
Effective length of database: 4,049,298
Effective search space: 1040669586
Effective search space used: 1040669586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)