RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15906
         (352 letters)



>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
           [TaxId: 562]}
          Length = 444

 Score =  111 bits (278), Expect = 5e-28
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 2/126 (1%)

Query: 53  GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI 112
           G F +  L    V   + ++  +     GG+F P L  G   G  F +    +FP+   +
Sbjct: 310 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQ-YHL 368

Query: 113 DPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF-TEGL 171
           + G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F   + L
Sbjct: 369 EAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPL 428

Query: 172 YDIHIQ 177
           Y   + 
Sbjct: 429 YSAILA 434


>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli
           [TaxId: 562]}
          Length = 79

 Score = 28.4 bits (64), Expect = 0.33
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 118 ALIGAAAQ--LGGVVRMTISLTIILIEATGNISFGLPLMLTLITA 160
            L GAA Q  L  ++R    + + L++A   I+ GL L +    A
Sbjct: 35  FLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA 79


>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 123

 Score = 29.1 bits (64), Expect = 0.38
 Identities = 9/45 (20%), Positives = 16/45 (35%)

Query: 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH 240
           TAR + +  V C+   ET+      ++       PI   +     
Sbjct: 2   TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHG 46


>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 156

 Score = 27.3 bits (59), Expect = 1.9
 Identities = 5/40 (12%), Positives = 12/40 (30%)

Query: 194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
            +         V  +     +   +  L  ++    P+VD
Sbjct: 3   GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD 42


>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262
           {Pseudomonas fluorescens [TaxId: 294]}
          Length = 155

 Score = 26.2 bits (58), Expect = 4.5
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 321 RYPSVNDLVVSENDRSFT 338
           R+  +ND+ +   +R F 
Sbjct: 120 RFACINDMPIKAQERKFH 137


>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 144

 Score = 25.3 bits (55), Expect = 7.6
 Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 25/134 (18%)

Query: 116 KYALIGAAAQLGGVVRMTISL-----TIILIEATGNISFGLPLMLTLITAKWIGDFFTEG 170
           K A++GA+  +G  + + +        + L +          L      A   G    E 
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 171 LY------DIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKAT 224
           L       D+ +  +G+P           N  A IV +              +       
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVAT--------------LTAACAQH 107

Query: 225 SHNGFPIVDVEPMT 238
             +    +   P+ 
Sbjct: 108 CPDAMICIISNPVN 121


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0426    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,288,412
Number of extensions: 57352
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 7
Length of query: 352
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,226,816
Effective search space: 326333056
Effective search space used: 326333056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)