BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15907
         (260 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HQR|D Chain D, Crystal Structure Of A Superantigen Bound To The High-
           Affinity, Zinc-Dependent Site On Mhc Class Ii
 pdb|1KTK|A Chain A, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
           With A Human T Cell Receptor Beta Chain (Vbeta2.1)
 pdb|1KTK|B Chain B, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
           With A Human T Cell Receptor Beta Chain (Vbeta2.1)
 pdb|1KTK|C Chain C, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
           With A Human T Cell Receptor Beta Chain (Vbeta2.1)
 pdb|1KTK|D Chain D, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
           With A Human T Cell Receptor Beta Chain (Vbeta2.1)
 pdb|1AN8|A Chain A, Crystal Structure Of The Streptococcal Superantigen Spe-C
          Length = 208

 Score = 32.0 bits (71), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 117 TTFTLNVVLSAYYGHP----GELTNSGLLNFGKFYDLRYDLLEMFF----YVGAGVFGGL 168
           TT TLN+    Y G       E++      F +  D   D+  +F+    + G  ++GG+
Sbjct: 33  TTHTLNIDTQKYRGKDYYISSEMSYEASQKFKR--DDHVDVFGLFYILNSHTGEYIYGGI 90

Query: 169 TGALYNSLNHKL 180
           T A  N +NHKL
Sbjct: 91  TPAQNNKVNHKL 102


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,527,858
Number of Sequences: 62578
Number of extensions: 239087
Number of successful extensions: 609
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 8
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)