Query psy15907
Match_columns 260
No_of_seqs 198 out of 1464
Neff 7.2
Searched_HMMs 46136
Date Sat Aug 17 00:38:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474|consensus 100.0 4E-60 8.6E-65 448.9 13.0 259 1-260 180-441 (762)
2 cd03684 ClC_3_like ClC-3-like 100.0 1.9E-37 4.2E-42 295.5 20.4 193 2-214 71-264 (445)
3 cd01036 ClC_euk Chloride chann 100.0 2E-36 4.4E-41 286.4 18.8 208 1-210 79-292 (416)
4 cd03685 ClC_6_like ClC-6-like 100.0 4.8E-36 1E-40 287.3 18.6 208 2-209 121-331 (466)
5 cd03683 ClC_1_like ClC-1-like 100.0 7.9E-36 1.7E-40 283.1 18.5 197 2-209 88-289 (426)
6 KOG0475|consensus 100.0 8.9E-37 1.9E-41 290.5 6.2 221 3-250 174-406 (696)
7 PF00654 Voltage_CLC: Voltage 100.0 6.7E-34 1.5E-38 264.1 21.2 198 3-229 34-235 (355)
8 PRK01610 putative voltage-gate 100.0 3.5E-34 7.6E-39 271.1 19.2 194 2-228 92-286 (418)
9 cd01033 ClC_like Putative ClC 100.0 7.9E-33 1.7E-37 259.7 18.3 191 3-227 78-268 (388)
10 cd01034 EriC_like ClC chloride 100.0 2.3E-32 5.1E-37 256.7 20.9 199 2-227 72-272 (390)
11 PRK01862 putative voltage-gate 100.0 2E-32 4.2E-37 268.6 19.6 194 3-228 111-304 (574)
12 COG0038 EriC Chloride channel 100.0 4.1E-32 9E-37 258.6 20.5 195 2-227 105-299 (443)
13 PRK05277 chloride channel prot 100.0 5.7E-31 1.2E-35 250.7 20.3 199 5-229 87-287 (438)
14 KOG0476|consensus 100.0 2.5E-32 5.5E-37 263.8 6.2 201 2-211 183-388 (931)
15 cd01031 EriC ClC chloride chan 100.0 2.3E-30 5E-35 244.0 19.1 193 3-227 79-272 (402)
16 cd00400 Voltage_gated_ClC CLC 100.0 1.3E-29 2.8E-34 237.4 22.1 193 3-227 78-270 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 1.5E-29 3.3E-34 236.7 21.1 196 3-227 71-266 (378)
18 PRK03655 putative ion channel 100.0 1.4E-28 3E-33 232.5 20.0 196 3-228 93-288 (414)
19 cd01034 EriC_like ClC chloride 99.5 8.2E-14 1.8E-18 131.2 12.1 105 4-130 281-385 (390)
20 cd01033 ClC_like Putative ClC 99.5 2.8E-13 6E-18 127.6 11.4 105 7-128 282-386 (388)
21 PRK05277 chloride channel prot 99.3 9.4E-12 2E-16 118.9 10.6 104 9-128 301-404 (438)
22 cd00400 Voltage_gated_ClC CLC 99.3 1.5E-11 3.3E-16 115.3 9.7 97 8-122 285-383 (383)
23 PRK01862 putative voltage-gate 99.2 6.6E-11 1.4E-15 116.6 11.8 104 9-130 319-424 (574)
24 PRK01610 putative voltage-gate 99.2 1.2E-10 2.5E-15 110.9 11.3 103 10-130 302-406 (418)
25 cd03682 ClC_sycA_like ClC sycA 99.2 1.8E-10 3.9E-15 108.1 10.6 99 3-125 273-371 (378)
26 cd01031 EriC ClC chloride chan 99.1 4.2E-10 9.1E-15 106.4 11.4 105 9-129 288-392 (402)
27 PF00654 Voltage_CLC: Voltage 98.5 6.4E-07 1.4E-11 83.5 10.0 100 9-126 252-354 (355)
28 COG0038 EriC Chloride channel 98.5 1.1E-06 2.4E-11 84.3 11.4 105 8-130 314-420 (443)
29 cd01036 ClC_euk Chloride chann 98.4 1.5E-06 3.3E-11 82.7 10.0 107 9-129 299-411 (416)
30 cd03685 ClC_6_like ClC-6-like 98.4 2.6E-06 5.6E-11 82.3 10.4 103 10-128 340-442 (466)
31 cd03684 ClC_3_like ClC-3-like 98.3 2E-06 4.2E-11 82.7 8.3 111 9-130 310-429 (445)
32 cd03683 ClC_1_like ClC-1-like 98.1 1.7E-05 3.6E-10 75.8 8.8 106 9-129 298-408 (426)
33 PRK03655 putative ion channel 97.9 5.6E-05 1.2E-09 72.0 10.1 88 10-124 305-396 (414)
34 KOG0475|consensus 94.2 0.061 1.3E-06 53.2 4.7 112 8-128 404-516 (696)
35 PF10518 TAT_signal: TAT (twin 75.3 3.1 6.7E-05 23.8 2.2 24 66-89 2-25 (26)
36 PF01102 Glycophorin_A: Glycop 71.2 6.6 0.00014 31.2 4.0 17 157-173 66-82 (122)
37 PRK09917 hypothetical protein; 63.2 26 0.00057 28.9 6.2 35 105-139 58-92 (157)
38 PF10399 UCR_Fe-S_N: Ubiquitin 53.8 15 0.00032 23.5 2.5 20 64-83 7-28 (41)
39 PRK10490 sensor protein KdpD; 46.8 1.8E+02 0.0039 30.7 10.6 86 75-174 410-499 (895)
40 PF12821 DUF3815: Protein of u 44.9 72 0.0016 25.1 5.8 57 65-132 18-74 (130)
41 TIGR02230 ATPase_gene1 F0F1-AT 43.5 1.3E+02 0.0027 23.1 6.6 20 107-126 49-68 (100)
42 TIGR01427 PTS_IIC_fructo PTS s 42.3 2.2E+02 0.0049 26.5 9.5 23 107-129 280-302 (346)
43 PRK11007 PTS system trehalose( 40.0 2.6E+02 0.0057 27.4 9.9 48 73-129 370-417 (473)
44 PF15110 TMEM141: TMEM141 prot 35.9 78 0.0017 23.9 4.3 38 89-126 40-77 (94)
45 TIGR01992 PTS-IIBC-Tre PTS sys 34.1 4.3E+02 0.0093 25.7 10.3 47 74-129 371-417 (462)
46 COG3216 Uncharacterized protei 33.9 2.4E+02 0.0051 24.0 7.3 29 69-98 43-71 (184)
47 TIGR03546 conserved hypothetic 31.3 3E+02 0.0064 22.7 7.5 34 65-99 12-45 (154)
48 KOG0476|consensus 30.7 31 0.00066 35.7 1.8 109 10-128 449-558 (931)
49 PF03672 UPF0154: Uncharacteri 30.2 1E+02 0.0022 21.7 3.9 16 159-174 2-17 (64)
50 COG3763 Uncharacterized protei 29.3 1.7E+02 0.0038 20.9 5.0 19 156-174 6-24 (71)
51 PF04138 GtrA: GtrA-like prote 28.4 1.3E+02 0.0029 22.4 4.8 57 166-222 35-91 (117)
52 COG2205 KdpD Osmosensitive K+ 28.4 6.4E+02 0.014 26.8 10.7 43 83-130 419-461 (890)
53 PRK01844 hypothetical protein; 28.2 2.1E+02 0.0047 20.6 5.3 19 156-174 6-24 (72)
54 PRK14855 nhaA pH-dependent sod 25.6 3.1E+02 0.0067 26.5 7.5 60 64-127 353-412 (423)
55 PRK09796 PTS system cellobiose 25.5 5.7E+02 0.012 25.1 9.5 21 109-129 387-407 (472)
56 COG3610 Uncharacterized conser 23.0 3.2E+02 0.0068 22.6 6.3 35 106-140 56-90 (156)
57 PF14362 DUF4407: Domain of un 22.9 5.5E+02 0.012 23.0 9.0 20 157-176 46-65 (301)
58 COG5336 Uncharacterized protei 22.1 3.9E+02 0.0085 20.9 6.5 17 153-169 74-90 (116)
59 COG4858 Uncharacterized membra 22.0 4.9E+02 0.011 22.5 7.2 19 156-174 127-145 (226)
60 PF05571 DUF766: Protein of un 20.8 1.5E+02 0.0033 27.1 4.3 56 150-205 44-99 (296)
61 PF11120 DUF2636: Protein of u 20.6 2.4E+02 0.0053 19.7 4.3 37 159-195 10-47 (62)
62 PF13829 DUF4191: Domain of un 20.4 4.3E+02 0.0092 23.3 6.8 29 157-185 53-81 (224)
No 1
>KOG0474|consensus
Probab=100.00 E-value=4e-60 Score=448.85 Aligned_cols=259 Identities=49% Similarity=0.846 Sum_probs=245.0
Q ss_pred CCCccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHH
Q psy15907 1 MPRLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGV 80 (260)
Q Consensus 1 ~p~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGl 80 (260)
+|+.+++||++.|+++++.++++|+.+|||||+||.||+||+.++|..|.++++++++|++|+||+|||++++||+|||+
T Consensus 180 iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGV 259 (762)
T KOG0474|consen 180 IPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGV 259 (762)
T ss_pred CcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHH-HHHHhhcCCCCccccccccccccccc-CCcChHHHHH
Q psy15907 81 AAAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLN-VVLSAYYGHPGELTNSGLLNFGKFYD-LRYDLLEMFF 158 (260)
Q Consensus 81 aaaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~-~v~~~~~g~~~~~~~~~l~~~~~~~~-~~~~~~~l~~ 158 (260)
||||+||+||++|++||..++|+..+.||.|+++++++++.+ ++....+|....|..+++++|+.++. ..|+.+|++.
T Consensus 260 aAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~ 339 (762)
T KOG0474|consen 260 AAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPP 339 (762)
T ss_pred HHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccCCccccccccccc
Confidence 999999999999999999999999999999999999999999 77778899889999999999988763 4789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccc-cccccCC
Q psy15907 159 YVGAGVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSACVPIIMIYSIDDCRPLGEDPTEHA-VQMYCGD 237 (260)
Q Consensus 159 ~illGi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~c~~ 237 (260)
++++|+++|++|++||.++.+...+|+++.+.+..|++|+++|+++|++++|.++ +..+|.|++.++.++. .+|+|++
T Consensus 340 f~~iGViGGlLGalfN~Ln~~~~~~r~~~~k~k~~kvlea~~Vs~~ts~~af~l~-~l~~C~P~~~~~~~~~~p~f~Cp~ 418 (762)
T KOG0474|consen 340 FLLIGVIGGLLGALFNYLNLKKVLRRYNYEKGKIGKVLEALLVSLVTSVLAFGLP-FLADCQPCPPSITEGQCPTFFCPD 418 (762)
T ss_pred eeEeehhhhhHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhhhH-HHhcCCCCCCCcccccCccccCCC
Confidence 9999999999999999999999889998888888999999999999999999998 6899999999887642 3479999
Q ss_pred CchhhHHhhhcCCchHHHHhhcC
Q psy15907 238 GEYNTLAALWLQVPEKSVRTMLL 260 (260)
Q Consensus 238 ~~y~~l~~l~~~~~~~~~~~Lf~ 260 (260)
|+||+||+|+||||||+||+||.
T Consensus 419 ~~YNdlAtL~fnt~ddaVrnLFh 441 (762)
T KOG0474|consen 419 GEYNDLATLFFNTNDDAVRNLFH 441 (762)
T ss_pred CchhHHHHHHcCCcHHHHHHHhc
Confidence 99999999999999999999994
No 2
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=1.9e-37 Score=295.49 Aligned_cols=193 Identities=36% Similarity=0.613 Sum_probs=157.2
Q ss_pred CCccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcc-cCchhhHHHHHhhhHHHH
Q psy15907 2 PRLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYF-REDHEKRDFVSGGAAAGV 80 (260)
Q Consensus 2 p~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~-~~~~~~r~ll~aGaaAGl 80 (260)
|+.+++|+++.|++++++++++|+|+|||||+||+||++|+.++|+ |+.+ .+++|||++++||+|||+
T Consensus 71 ~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~-----------~~~~~~~~~~~r~li~~GaaAGl 139 (445)
T cd03684 71 RGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRL-----------FPKYRRNEAKRREILSAAAAAGV 139 (445)
T ss_pred cccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHH-----------HHHhccCHHHHHHHHHHHHhhhh
Confidence 6889999999999999999999999999999999999999999974 3322 378899999999999999
Q ss_pred HHHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHH
Q psy15907 81 AAAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYV 160 (260)
Q Consensus 81 aaaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i 160 (260)
+|+||||+||++|++||+.++|+.+..|++++++++|+++.+.+.....++...|. ++ . +.+++..|+++++
T Consensus 140 aAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~~~~~~~~~~f~------~~-~-~~~~~~~~l~~~i 211 (445)
T cd03684 140 AVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLNPFGTGRLVLFE------VE-Y-DRDWHYFELIPFI 211 (445)
T ss_pred HHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhcccCCCCceEEe------cc-C-CCCccHHHHHHHH
Confidence 99999999999999999999888888888888888888777655332223222221 11 1 2367788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q psy15907 161 GAGVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSACVPIIMIY 214 (260)
Q Consensus 161 llGi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~~i~~~~~~ 214 (260)
++|++||++|.+|++.++++++++++.+. +..+++++++++++++++++..++
T Consensus 212 ~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~l~~~~p~ 264 (445)
T cd03684 212 LLGIFGGLYGAFFIKANIKWARFRKKSLL-KRYPVLEVLLVALITALISFPNPY 264 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChHH
Confidence 99999999999999999999998887642 123456777888888888865443
No 3
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=2e-36 Score=286.35 Aligned_cols=208 Identities=38% Similarity=0.668 Sum_probs=161.8
Q ss_pred CCCccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHH
Q psy15907 1 MPRLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGV 80 (260)
Q Consensus 1 ~p~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGl 80 (260)
.|+++++|+++.|++++++++++|+|+|||||+||+||++|+.++++.+...++..++++.+++++|||++++||+|||+
T Consensus 79 ~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGl 158 (416)
T cd01036 79 LPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGV 158 (416)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcch
Confidence 37889999999999999999999999999999999999999999986432222222333444578899999999999999
Q ss_pred HHHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccc----cccccccccCCcChHHH
Q psy15907 81 AAAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSG----LLNFGKFYDLRYDLLEM 156 (260)
Q Consensus 81 aaaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~----l~~~~~~~~~~~~~~~l 156 (260)
||+||||++|++|++||+.++|+.+..|++++++++|+++.+.+.............+. .++++ .+.+++..|+
T Consensus 159 aAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 236 (416)
T cd01036 159 ASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTVFE--LHVPLNLYEF 236 (416)
T ss_pred hhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccceeccccC--CCCCCCHHHH
Confidence 99999999999999999999998898899999888888887765432211100000000 01111 1246788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHH
Q psy15907 157 FFYVGAGVFGGLTGALYNSLNHKLTVFRIRYMS--ARYVKVLEAVLVAMVSACVPI 210 (260)
Q Consensus 157 ~~~illGi~~Gl~g~lF~~~~~~~~~~~~~~~~--~~~~~~~~~~lv~~it~~i~~ 210 (260)
++++++|++||++|.+|++.++++++++++.+. .++.|++++.+++++++++++
T Consensus 237 ~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 292 (416)
T cd01036 237 IPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877543 345677788888888876654
No 4
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=4.8e-36 Score=287.33 Aligned_cols=208 Identities=58% Similarity=0.925 Sum_probs=169.2
Q ss_pred CCccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHH
Q psy15907 2 PRLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVA 81 (260)
Q Consensus 2 p~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGla 81 (260)
|+.+++|+++.|++++++++++|+|+|||||++|+||++|+.++|..++.++.++|+++.+++++|||++++||+|||+|
T Consensus 121 ~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGla 200 (466)
T cd03685 121 PHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVA 200 (466)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchh
Confidence 67789999999999999999999999999999999999999999865444455556677667889999999999999999
Q ss_pred HHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCC-CCccccccccccc-ccccCCcChHHHHHH
Q psy15907 82 AAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGH-PGELTNSGLLNFG-KFYDLRYDLLEMFFY 159 (260)
Q Consensus 82 aaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~-~~~~~~~~l~~~~-~~~~~~~~~~~l~~~ 159 (260)
++||||++|++|++||+.++|+.+..|+.++++++|+++++.+...+... ...+.......+. ...+.+++..|++++
T Consensus 201 aaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 280 (466)
T cd03685 201 AAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPF 280 (466)
T ss_pred hccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999876554221 1112100110011 111245788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHH
Q psy15907 160 VGAGVFGGLTGALYNSLNHKLTVFRIRYMS-ARYVKVLEAVLVAMVSACVP 209 (260)
Q Consensus 160 illGi~~Gl~g~lF~~~~~~~~~~~~~~~~-~~~~~~~~~~lv~~it~~i~ 209 (260)
+++|++||++|.+|++.+.+.++++++... +++.|++++++++++++++.
T Consensus 281 illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~lv~~~~~~~~ 331 (466)
T cd03685 281 MLIGVIGGLLGALFNHLNHKVTRFRKRINHKGKLLKVLEALLVSLVTSVVA 331 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988887653 56667888888888877654
No 5
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=7.9e-36 Score=283.08 Aligned_cols=197 Identities=31% Similarity=0.553 Sum_probs=157.1
Q ss_pred CCccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhc-ccCchhhHHHHHhhhHHHH
Q psy15907 2 PRLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKY-FREDHEKRDFVSGGAAAGV 80 (260)
Q Consensus 2 p~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~-~~~~~~~r~ll~aGaaAGl 80 (260)
|+.+++|+++.|++++++++++|+|+|||||+||+||++++.++|..+. .+. +++++|||++++||+|||+
T Consensus 88 ~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~--------~~~~~~~~~~rr~Li~~GaaAGl 159 (426)
T cd03683 88 PEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTF--------FSGIYENESRRMEMLAAACAVGV 159 (426)
T ss_pred cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhccc--------ccccccCHHHHHHHHHhHhhhhh
Confidence 6889999999999999999999999999999999999999999985310 000 2467788899999999999
Q ss_pred HHHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHH
Q psy15907 81 AAAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYV 160 (260)
Q Consensus 81 aaaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i 160 (260)
||+||||++|++|++||+.++|+.+..|++++++++|+++.+.+.....++.+.++ .+......+.+++..|++.++
T Consensus 160 aAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~i 236 (426)
T cd03683 160 ACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFSDQETITA---LFKTTFFVDFPFDVQELPIFA 236 (426)
T ss_pred HHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc---cccccccCCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999888877655444432211 011111112467888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHH
Q psy15907 161 GAGVFGGLTGALYNSLNHKLTVFRIRYMS----ARYVKVLEAVLVAMVSACVP 209 (260)
Q Consensus 161 llGi~~Gl~g~lF~~~~~~~~~~~~~~~~----~~~~~~~~~~lv~~it~~i~ 209 (260)
++|+++|++|.+|++.+.+..++++|+.. .+..+.+++.+++++++++.
T Consensus 237 ~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~ 289 (426)
T cd03683 237 LLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLT 289 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999888776542 22345667777777777554
No 6
>KOG0475|consensus
Probab=100.00 E-value=8.9e-37 Score=290.49 Aligned_cols=221 Identities=31% Similarity=0.505 Sum_probs=185.8
Q ss_pred CccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhc-ccCchhhHHHHHhhhHHHHH
Q psy15907 3 RLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKY-FREDHEKRDFVSGGAAAGVA 81 (260)
Q Consensus 3 ~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~-~~~~~~~r~ll~aGaaAGla 81 (260)
+.+..+|+..|.++..++++||+|+|||||+||++.|+|..+++. |+. -.|+..+|++++|++|||+|
T Consensus 174 ~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~-----------f~~~~~~e~~~reilsAaaAaGva 242 (696)
T KOG0475|consen 174 GFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKI-----------FPKYRLNEAKKREILSAAAAAGVA 242 (696)
T ss_pred hhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhh-----------hhhhccchhHHHHHHHHHhhccch
Confidence 567899999999999999999999999999999999999999874 433 34788899999999999999
Q ss_pred HHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHHH
Q psy15907 82 AAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVG 161 (260)
Q Consensus 82 aaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~il 161 (260)
++|||||||++|++||+..+|..+..|++++++++|..+.+.+... .+.++.+.+. .+ +.+|++.|+++|++
T Consensus 243 vaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~i~pf-~~~~~vLf~V------~Y-~~~W~~~EL~pFi~ 314 (696)
T KOG0475|consen 243 VAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRSINPF-GNSRLVLFYV------DY-DRPWSLFELLPFIL 314 (696)
T ss_pred hhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHeeeccc-CCCceEEEEE------ec-cCCcccccchHHHH
Confidence 9999999999999999998899999999999999999988876543 3333332221 23 46899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh-----------hccCCCCCCCCccccc
Q psy15907 162 AGVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSACVPIIMIY-----------SIDDCRPLGEDPTEHA 230 (260)
Q Consensus 162 lGi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~~i~~~~~~-----------~~~~~~~~~~~~~~~~ 230 (260)
+|++||+.|.+|+|++.++.++||.+...+| +++|+++++++|++++++.++ ++.+|.+....+
T Consensus 315 LGifgGl~G~~~ir~n~~~~~~rK~~~lg~~-pv~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~~s~~---- 389 (696)
T KOG0475|consen 315 LGIFGGLWGAFFIRLNIRFCRFRKSSKLGKF-PVLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCSPSSSTS---- 389 (696)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhhccCC-cchhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCCccccc----
Confidence 9999999999999999999999998854444 689999999999999998765 367888766554
Q ss_pred cccccCCCchhhHHhhhcCC
Q psy15907 231 VQMYCGDGEYNTLAALWLQV 250 (260)
Q Consensus 231 ~~~~c~~~~y~~l~~l~~~~ 250 (260)
.|+.-.|+..++|++..
T Consensus 390 ---l~~~~~~~~~~~L~~a~ 406 (696)
T KOG0475|consen 390 ---LPETTVYSAAILLLLAL 406 (696)
T ss_pred ---CcccchHHHHHHHHHHH
Confidence 24444788888887654
No 7
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=6.7e-34 Score=264.06 Aligned_cols=198 Identities=27% Similarity=0.465 Sum_probs=151.1
Q ss_pred CccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchh-hHHHHHhhhHHHHH
Q psy15907 3 RLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHE-KRDFVSGGAAAGVA 81 (260)
Q Consensus 3 ~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~-~r~ll~aGaaAGla 81 (260)
+++++|+.+.|++++++++++|+|+|||||++|+|+++++.++|+ ++. ++++ +|.+++||+|||+|
T Consensus 34 ~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~-----------~~~--~~~~~~r~l~~~g~aAgla 100 (355)
T PF00654_consen 34 GRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRR-----------FRL--SRNETRRLLLAAGAAAGLA 100 (355)
T ss_dssp ---HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHH-----------TT----CHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHh-----------hcc--cchHHHhHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999974 332 3445 77899999999999
Q ss_pred HHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCccc-ccccccccccccCCcChHHHHHHH
Q psy15907 82 AAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELT-NSGLLNFGKFYDLRYDLLEMFFYV 160 (260)
Q Consensus 82 aaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~-~~~l~~~~~~~~~~~~~~~l~~~i 160 (260)
++||||++|++|++||+.++++.+ .+.++++|+++++.+.+.+.++++.|. .+ +. .++++.|+++++
T Consensus 101 a~F~aPlaG~lFalE~~~~~~~~~----~~~~~~~as~~a~~v~~~~~~~~~~f~~~~------~~--~~~~~~~~~~~~ 168 (355)
T PF00654_consen 101 AAFNAPLAGVLFALEELSRDFSVR----LLLPALVASIVATLVSRLLFGNHPIFGSVP------QL--FPFSLWELPLFL 168 (355)
T ss_dssp HHHT-HHHHHHHHHCCTCHCCSTT----THHHHHHHHHHHHHHHHHHHTSS-SS---T------T-------GGGHHHHH
T ss_pred HHhcCCcccceehhheeeccccch----hhHHHHHHHHHHHHHHHHHcCcCccccccc------cc--ccCCHHHHHHHH
Confidence 999999999999999988766554 566777777777777777777776654 32 11 267888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccC--CCCCCCCcccc
Q psy15907 161 GAGVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSACVPIIMIYSIDD--CRPLGEDPTEH 229 (260)
Q Consensus 161 llGi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~~i~~~~~~~~~~--~~~~~~~~~~~ 229 (260)
++|++||++|.+|++.++++++++++....+.++++++.+.++++++++++ .|+ ..+.|++.++.
T Consensus 169 llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~l~~~i~gl~~g~l~~~----~p~~~~~g~G~~~i~~ 235 (355)
T PF00654_consen 169 LLGIICGLLGALFNRLLRWLRKFFRKLKRLKIPPILRPVIGGLVIGLLAFF----FPEGSVLGSGYELIQS 235 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHS----SGG-SGSSSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH----HhhhcccCCcHHHHHH
Confidence 999999999999999999999988876422222455777888888887753 456 99999876543
No 8
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=3.5e-34 Score=271.13 Aligned_cols=194 Identities=20% Similarity=0.234 Sum_probs=160.3
Q ss_pred CCccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHH
Q psy15907 2 PRLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVA 81 (260)
Q Consensus 2 p~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGla 81 (260)
++++++|+.+.|++++++++++|+|+|||||++|+|+++|++++|+ | ++++|||++++||+|||+|
T Consensus 92 ~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~-----------~---~~~~~~r~li~~GaaAGla 157 (418)
T PRK01610 92 DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQR-----------F---TPRQEWKLWIACGAAAGMA 157 (418)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH-----------h---CChHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999999999999999984 2 3568899999999999999
Q ss_pred HHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCC-CcccccccccccccccCCcChHHHHHHH
Q psy15907 82 AAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHP-GELTNSGLLNFGKFYDLRYDLLEMFFYV 160 (260)
Q Consensus 82 aaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~i 160 (260)
|+||||++|++|++|++.+ +..++.+.|+++|++++..+.+.+.|.+ +.|..+ . ..+++..|++.++
T Consensus 158 a~F~aPlaG~lFa~E~l~~----~~~~~~~~p~~ias~~a~~v~~~~~g~~~~~~~i~------~--~~~~~~~~l~~~i 225 (418)
T PRK01610 158 SAYHAPLAGSLFIAEILFG----TLMLASLGPVVISAVVALLTTNLLNGSDALLYNVQ------L--SVTVQARDYALII 225 (418)
T ss_pred HHhCCchHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHcCCCCCeeecC------C--cCCCCHHHHHHHH
Confidence 9999999999999999975 4567889999999999999988887744 333322 1 1356788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCccc
Q psy15907 161 GAGVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSACVPIIMIYSIDDCRPLGEDPTE 228 (260)
Q Consensus 161 llGi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~~ 228 (260)
++|+++|++|.+|++..++.++++++.+.+++.| ..+.+++++++++. .|+..+.|++..+
T Consensus 226 ~lGii~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~---~~lggli~g~l~~~----~p~~~G~G~~~i~ 286 (418)
T PRK01610 226 STGLLAGLCGPLLLTLMNASHRGFVSLKLAPPWQ---LALGGLIVGLLSLF----TPAVWGNGYSVVQ 286 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchhHH---HHHHHHHHHHHHHH----hhHHhCCcHHHHH
Confidence 9999999999999999999888777665444444 45667777776643 4778888876543
No 9
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=7.9e-33 Score=259.73 Aligned_cols=191 Identities=20% Similarity=0.182 Sum_probs=155.6
Q ss_pred CccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHH
Q psy15907 3 RLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAA 82 (260)
Q Consensus 3 ~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaa 82 (260)
+++++|+.+.|.+++++++++|+|+|||||++|+|++++++++|+ +| .+++|||++++||+|||+||
T Consensus 78 ~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~-----------~~--~~~~~~r~li~~GaaAGlaa 144 (388)
T cd01033 78 KRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDW-----------LG--LTVADRRLLVACAAGAGLAA 144 (388)
T ss_pred CCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHH-----------hC--CCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999974 33 26788999999999999999
Q ss_pred HhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHHHH
Q psy15907 83 AFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVGA 162 (260)
Q Consensus 83 aF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ill 162 (260)
+||||++|++|++||+.+++ .++.+.|+++|+++++.+.+.+.|+++.|..+ + .+.++.++++++++
T Consensus 145 ~F~aPlaG~lFalE~~~~~~----~~~~~~~~~~as~~a~~v~~~~~g~~~~f~~~------~---~~~~~~~l~~~ill 211 (388)
T cd01033 145 VYNVPLAGALFALEILLRTI----SLRSVVAALATSAIAAAVASLLKGDHPIYDIP------P---MQLSTPLLIWALLA 211 (388)
T ss_pred HhCCchHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHhCCCCceeecC------C---CCCCHHHHHHHHHH
Confidence 99999999999999998654 56778899999999999998888887766543 1 23447788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcc
Q psy15907 163 GVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSACVPIIMIYSIDDCRPLGEDPT 227 (260)
Q Consensus 163 Gi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~ 227 (260)
|+++|++|.+|++.+++.++++++.+ +.+.+ ..+.+++++++++ +.|+..+.|++..
T Consensus 212 Gi~~Gl~~~lf~~~~~~~~~~~~~~~-~~~~~---~~l~gl~~g~~~~----~~p~~~G~G~~~i 268 (388)
T cd01033 212 GPVLGVVAAGFRRLSQAARAKRPKGK-RILWQ---MPLAFLVIGLLSI----FFPQILGNGRALA 268 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-chHHH---HHHHHHHHHHHHH----HHHHHhCCcHHHH
Confidence 99999999999999999888765432 22222 3455556666553 3577788777654
No 10
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.3e-32 Score=256.68 Aligned_cols=199 Identities=25% Similarity=0.305 Sum_probs=149.0
Q ss_pred CCccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHH
Q psy15907 2 PRLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVA 81 (260)
Q Consensus 2 p~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGla 81 (260)
|+++++|+++.|++++++++++|+|+|||||++|+|+++|+.++|+ ++. ++++|||++++||+|||+|
T Consensus 72 ~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~-----------~~~-~~~~~~r~li~~GaaAGla 139 (390)
T cd01034 72 RRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRR-----------LPK-WGGLSERGLILAGGAAGLA 139 (390)
T ss_pred cccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHH-----------ccc-CchHHHHHHHHHHHHHhHH
Confidence 5689999999999999999999999999999999999999999984 221 2368899999999999999
Q ss_pred HHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHHH
Q psy15907 82 AAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVG 161 (260)
Q Consensus 82 aaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~il 161 (260)
|+||||++|++|++||+.++++.+.. .+++++++++..+.+.+.|+++.|..+. . ..++..+++.+++
T Consensus 140 a~F~aPlaG~lF~~E~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~g~~~~f~~~~------~--~~~~~~~~~~~il 207 (390)
T cd01034 140 AAFNTPLAGIVFAIEELSRDFELRFS----GLVLLAVIAAGLVSLAVLGNYPYFGVAA------V--ALPLGEAWLLVLV 207 (390)
T ss_pred HHhCCcchhHHHHHHHhhhhhhHHHH----HHHHHHHHHHHHHHHHHcCCCCccCCCC------C--CcCCHHHHHHHHH
Confidence 99999999999999999887655444 4455555555555556677766654431 1 1356678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhh-hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcc
Q psy15907 162 AGVFGGLTGALYNSLNHKLTVFRIRYMS-ARY-VKVLEAVLVAMVSACVPIIMIYSIDDCRPLGEDPT 227 (260)
Q Consensus 162 lGi~~Gl~g~lF~~~~~~~~~~~~~~~~-~~~-~~~~~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~ 227 (260)
+|++||++|.+|++.+.+.+++++++.. +++ .+++...+.++++++++++ ..++-.+.|++.+
T Consensus 208 lGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~---~~~~~~G~G~~~i 272 (390)
T cd01034 208 CGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLV---SGGLTFGTGYLQA 272 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHh---CCCccccCcHHHH
Confidence 9999999999999999998887776531 112 2234445555555555532 2234555666544
No 11
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=2e-32 Score=268.61 Aligned_cols=194 Identities=20% Similarity=0.281 Sum_probs=158.2
Q ss_pred CccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHH
Q psy15907 3 RLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAA 82 (260)
Q Consensus 3 ~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaa 82 (260)
+++++|+.+.|++++++++++|+|+|||||++|+||++|+.++|+ ++. +++++|.+++||+|||+||
T Consensus 111 ~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~-----------~~~--~~~~~r~l~~~G~aAglaa 177 (574)
T PRK01862 111 GVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRF-----------AHF--DPPRLRLLVACGAAAGITS 177 (574)
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHH-----------hCC--CHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999984 332 5678899999999999999
Q ss_pred HhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHHHH
Q psy15907 83 AFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVGA 162 (260)
Q Consensus 83 aF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ill 162 (260)
+||||++|++|++|++.+++ ..+.+.|+++|++++..+.+.+.|+++.|..+ .. .+++..++++++++
T Consensus 178 ~F~aPl~g~lFa~E~~~~~~----~~~~~~~~~~as~~a~~v~~~~~g~~~~~~~~------~~--~~~~~~~~~~~~~l 245 (574)
T PRK01862 178 AYNAPIAGAFFVAEIVLGSI----AMESFGPLVVASVVANIVMREFAGYQPPYEMP------VF--PAVTGWEVLLFVAL 245 (574)
T ss_pred HhCCchHHHHHHHHHHhhhc----cHHHHHHHHHHHHHHHHHHHHHcCCCceeeCC------Cc--CcCCHHHHHHHHHH
Confidence 99999999999999997654 44667888888888888888888877766543 12 35778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCccc
Q psy15907 163 GVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSACVPIIMIYSIDDCRPLGEDPTE 228 (260)
Q Consensus 163 Gi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~~ 228 (260)
|++||++|.+|++...+.++++++.+.+++.| ..+.+++++++++ +.|+..+.|++.++
T Consensus 246 Gv~~G~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~gl~~g~l~~----~~p~~~g~G~~~i~ 304 (574)
T PRK01862 246 GVLCGAAAPQFLRLLDASKNQFKRLPVPLPVR---LALGGLLVGVISV----WVPEVWGNGYSVVN 304 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCchhHH---HHHHHHHHHHHHH----HHHHHhcCCHHHHH
Confidence 99999999999999999888776654333333 3456666666654 35777888877554
No 12
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-32 Score=258.59 Aligned_cols=195 Identities=24% Similarity=0.344 Sum_probs=160.4
Q ss_pred CCccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHH
Q psy15907 2 PRLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVA 81 (260)
Q Consensus 2 p~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGla 81 (260)
++++++|..+.|.+++.++++||+|+|||||+||+|+++|+.++|+ ++. +++|||++++||+|||+|
T Consensus 105 ~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~-----------l~~--~~~~~r~Ll~~GaAaGla 171 (443)
T COG0038 105 KGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRL-----------LKL--SREDRRILLAAGAAAGLA 171 (443)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHH-----------hCC--CHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999984 332 578999999999999999
Q ss_pred HHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHHH
Q psy15907 82 AAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVG 161 (260)
Q Consensus 82 aaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~il 161 (260)
|+||||++|++|++||+.+.+ +..+++.|+++|+++++.+...+.++++.+.++ . ...++.++++.+++
T Consensus 172 aaF~aPlagvlF~~E~l~~~~---~~~~~l~p~~vaa~va~~v~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~ 240 (443)
T COG0038 172 AAFNAPLAGALFAIEVLYGRF---LEYRALVPVLVAAVVALLVAGLFGGPHFLLPIV------T--TPHMSLWDLLLYLV 240 (443)
T ss_pred HHhCCcHHHHHHHHHHHHhhc---ccHHHHHHHHHHHHHHHHHHHHcCCCCceeecc------c--cCcCCHHHHHHHHH
Confidence 999999999999999998642 677889999999999999998888755443322 1 23577899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcc
Q psy15907 162 AGVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSACVPIIMIYSIDDCRPLGEDPT 227 (260)
Q Consensus 162 lGi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~ 227 (260)
+|+++|+.|.+|.+.....+++++|.+.+++.|. .+.+++.+.++ ...|+..+.|++..
T Consensus 241 lGii~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~l~g~~~----l~~P~~lg~G~~~~ 299 (443)
T COG0038 241 LGIIAGLFGVLLSRLLALSRRFFRRLPLPPLLRP---ALGGLLVGALG----LLFPEVLGNGYGLI 299 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHH---HHHHHHHHHHH----HhchhhhCCCccHH
Confidence 9999999999999999887777776654443343 44455555554 34788888888754
No 13
>PRK05277 chloride channel protein; Provisional
Probab=99.97 E-value=5.7e-31 Score=250.69 Aligned_cols=199 Identities=24% Similarity=0.345 Sum_probs=156.7
Q ss_pred cc-hhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHHH
Q psy15907 5 VR-IKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAAA 83 (260)
Q Consensus 5 l~-~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaaa 83 (260)
++ +|+++.|++++++++++|+|+|||||++|+|+++|++++++ ++. ++++++|++++||+|||++++
T Consensus 87 ~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~-----------~~~-~~~~~~~~li~~G~aaglaa~ 154 (438)
T PRK05277 87 VRWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDI-----------FRL-RSDEARHTLLAAGAAAGLAAA 154 (438)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHH-----------ccc-CCHHHHHHHHHHHHHHhHHHh
Confidence 44 67899999999999999999999999999999999999874 221 256789999999999999999
Q ss_pred hccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHHHHH
Q psy15907 84 FGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVGAG 163 (260)
Q Consensus 84 F~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~illG 163 (260)
||||++|++|++||+.+++ +..++.+.|+++++++++.+.+.+.|+++.+..+ .+ ..++..+++.++++|
T Consensus 155 f~APl~g~lf~~E~~~~~~--~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~------~~--~~~~~~~l~~~i~lG 224 (438)
T PRK05277 155 FNAPLAGILFVIEEMRPQF--RYSLISIKAVFIGVIMATIVFRLFNGEQAVIEVG------KF--SAPPLNTLWLFLLLG 224 (438)
T ss_pred cCCchHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHHHHHHHHhcCCCceEecc------CC--CCCCHHHHHHHHHHH
Confidence 9999999999999987543 2345678888899999998888888877655432 22 135577889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccc
Q psy15907 164 VFGGLTGALYNSLNHKLTVFRIRYMSARYVKV-LEAVLVAMVSACVPIIMIYSIDDCRPLGEDPTEH 229 (260)
Q Consensus 164 i~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~-~~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~~~ 229 (260)
++||++|.+|++.+.+.++++++...++++++ +...++++++++++ +..|+..+.|++.+++
T Consensus 225 i~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~----~~~p~~~g~G~~~i~~ 287 (438)
T PRK05277 225 IIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLG----LLAPAAVGGGFNLIPI 287 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH----HHhhhhcCChHHHHHH
Confidence 99999999999999999988877654444443 33444455555443 3468888888775543
No 14
>KOG0476|consensus
Probab=99.97 E-value=2.5e-32 Score=263.82 Aligned_cols=201 Identities=30% Similarity=0.569 Sum_probs=157.0
Q ss_pred CCccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHH
Q psy15907 2 PRLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVA 81 (260)
Q Consensus 2 p~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGla 81 (260)
..+++.||+++|+++..+++|||+++|||||+|||++++++.+++.....+. ..|.|+..+.+|+++|+|.|+|
T Consensus 183 keYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~------g~~enesR~~EmLaaaCAVGVa 256 (931)
T KOG0476|consen 183 KEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFG------GFFENESRNMEMLAAACAVGVA 256 (931)
T ss_pred HhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhcc------ccccCcchHHHHHHHHhhhhhe
Confidence 3689999999999999999999999999999999999999999875321111 2345667777999999999999
Q ss_pred HHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccc-cCCcChHHHHHHH
Q psy15907 82 AAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFY-DLRYDLLEMFFYV 160 (260)
Q Consensus 82 aaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i 160 (260)
+.|.||+|||||++|++++||..|++||.|+++.+++++.+++..++...+ .++..+++. +|. +.+++..|++.|+
T Consensus 257 ctFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~vFR~lavf~v~~~--~tItA~yqT-~F~~d~~F~~~ELp~Fa 333 (931)
T KOG0476|consen 257 CTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFVFRLLAVFFVEAE--VTITALYQT-SFRPDFPFDVQELPFFA 333 (931)
T ss_pred eeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHHHHHHHHHcccch--hhhHHHHhc-cCCCCCCCCHHHhHHHH
Confidence 999999999999999999999999999999999999999998765444222 223344432 233 3489999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhh---hhHHHHHHHHHHHHHHHHHH
Q psy15907 161 GAGVFGGLTGALYNSLNHKLTVFRIRYM-SAR---YVKVLEAVLVAMVSACVPII 211 (260)
Q Consensus 161 llGi~~Gl~g~lF~~~~~~~~~~~~~~~-~~~---~~~~~~~~lv~~it~~i~~~ 211 (260)
++|++||++|++|+++.++.--+.++.+ .++ ..+++.+.+++++.+.+.|+
T Consensus 334 llGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~ssltfP 388 (931)
T KOG0476|consen 334 LLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFSSLTFP 388 (931)
T ss_pred HHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHhheecC
Confidence 9999999999999988776543333222 111 12456666777666666654
No 15
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.97 E-value=2.3e-30 Score=243.98 Aligned_cols=193 Identities=26% Similarity=0.409 Sum_probs=155.9
Q ss_pred CccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHH
Q psy15907 3 RLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAA 82 (260)
Q Consensus 3 ~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaa 82 (260)
+.+++|+++.|++++++++++|+|+|||||++|+|+++|+.++++ ++ .+++|+|++++||+|||+++
T Consensus 79 ~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~-----------~~--~~~~~~~~l~~~g~aag~aa 145 (402)
T cd01031 79 PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKW-----------FK--TSPEERRQLIAAGAAAGLAA 145 (402)
T ss_pred CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHH-----------hc--CCHHHHHHHHHHHHHHhHHH
Confidence 456789999999999999999999999999999999999999974 23 25678999999999999999
Q ss_pred HhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHHHH
Q psy15907 83 AFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVGA 162 (260)
Q Consensus 83 aF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ill 162 (260)
+||||++|++|++||+.+++ .++.+.|++++++++..+.+.+.++++.+..+ .. .+++..|++.++++
T Consensus 146 ~f~aPl~g~lf~~E~~~~~~----~~~~~~~~~~a~~~a~~v~~~~~~~~~~~~~~------~~--~~~~~~~l~~~ill 213 (402)
T cd01031 146 AFNAPLAGVLFVLEELRHSF----SPLALLTALVASIAADFVSRLFFGLGPVLSIP------PL--PALPLKSYWLLLLL 213 (402)
T ss_pred HhCCccHHHHHHHHHHHhhC----CHHHHHHHHHHHHHHHHHHHHHcCCCceEecC------CC--CCCCHHHHHHHHHH
Confidence 99999999999999998755 34567777778877777777777777655432 12 35778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcc
Q psy15907 163 GVFGGLTGALYNSLNHKLTVFRIRY-MSARYVKVLEAVLVAMVSACVPIIMIYSIDDCRPLGEDPT 227 (260)
Q Consensus 163 Gi~~Gl~g~lF~~~~~~~~~~~~~~-~~~~~~~~~~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~ 227 (260)
|+++|++|.+|++.+.+.+++++++ +.+++.| ..+.+++++++++. .|+..+.|++..
T Consensus 214 Gv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~---~~l~gl~~~~~~~~----~p~~~g~G~~~i 272 (402)
T cd01031 214 GIIAGLLGYLFNRSLLKSQDLYRKLKKLPRELR---VLLPGLLIGPLGLL----LPEALGGGHGLI 272 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCChhHH---HHHHHHHHHHHHHH----HHHHhCCHHHHH
Confidence 9999999999999999999988876 3334444 44666777777643 566777776543
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.97 E-value=1.3e-29 Score=237.37 Aligned_cols=193 Identities=23% Similarity=0.351 Sum_probs=157.7
Q ss_pred CccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHH
Q psy15907 3 RLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAA 82 (260)
Q Consensus 3 ~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaa 82 (260)
+.+++|+.+.|++++++++++|+|+|||||++|+|+++|++++++ ++ .++.|+|.+++||+|||+++
T Consensus 78 ~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~-----------~~--~~~~~~~~l~~~G~aaglaa 144 (383)
T cd00400 78 GRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRR-----------LR--LSRNDRRILVACGAAAGIAA 144 (383)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHH-----------hC--CCHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999974 22 25678999999999999999
Q ss_pred HhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHHHH
Q psy15907 83 AFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVGA 162 (260)
Q Consensus 83 aF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ill 162 (260)
+||||++|++|++|++.+++.. +.+.|+++++++++.+.+.+.++++.+..+ . ..+++..+++.++++
T Consensus 145 ~f~aPl~g~lf~~E~~~~~~~~----~~~~~~~~~~~~a~~v~~~~~~~~~~~~~~------~--~~~~~~~~~~~~il~ 212 (383)
T cd00400 145 AFNAPLAGALFAIEVLLGEYSV----ASLIPVLLASVAAALVSRLLFGAEPAFGVP------L--YDPLSLLELPLYLLL 212 (383)
T ss_pred hcCChhHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHcCCCCeeeCC------C--CCcCCHHHHHHHHHH
Confidence 9999999999999999876533 568888889999998888888776655432 1 246788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcc
Q psy15907 163 GVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSACVPIIMIYSIDDCRPLGEDPT 227 (260)
Q Consensus 163 Gi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~ 227 (260)
|+++|++|.+|++.+++.++++++.+.++ .+++.+.+++++++++. .|+..+.|++..
T Consensus 213 Gv~~g~~g~~f~~~~~~~~~~~~~~~~~~---~~~~~i~gll~~~~~~~----~p~~~g~G~~~~ 270 (383)
T cd00400 213 GLLAGLVGVLFVRLLYKIERLFRRLPIPP---WLRPALGGLLLGLLGLF----LPQVLGSGYGAI 270 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcH---HHHHHHHHHHHHHHHHH----HHHHHcCcHHHH
Confidence 99999999999999999998887753333 34445666666666543 466777776543
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.97 E-value=1.5e-29 Score=236.72 Aligned_cols=196 Identities=21% Similarity=0.297 Sum_probs=155.0
Q ss_pred CccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHH
Q psy15907 3 RLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAA 82 (260)
Q Consensus 3 ~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaa 82 (260)
+++++|..+.|++++.+++++|+|+|||||++|+|++++++++++ ++. +++++|++++||+|||+++
T Consensus 71 ~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~-----------~~~--~~~~~r~l~~~g~aAglaa 137 (378)
T cd03682 71 EGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRV-----------FKL--PEEDRRILLIAGIAAGFAA 137 (378)
T ss_pred CCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHH-----------hCC--CHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999974 232 4568889999999999999
Q ss_pred HhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHHHH
Q psy15907 83 AFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVGA 162 (260)
Q Consensus 83 aF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ill 162 (260)
+||||++|++|++|++.. .+..++.++|+++++++++.+.+.+...++.+..+ . ..+++..++++++++
T Consensus 138 ~f~aPl~g~~f~~E~~~~---~~~~~~~~~~~~i~~~~a~~v~~~~~~~~~~~~~~------~--~~~~~~~~l~~~i~~ 206 (378)
T cd03682 138 VFGTPLAGAIFALEVLVL---GRLRYSALIPCLVAAIVADWVSHALGLEHTHYHIV------F--IPTLDPLLFVKVILA 206 (378)
T ss_pred HhCCcHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHhCCCCCccccC------C--CCCCCHHHHHHHHHH
Confidence 999999999999999962 24567788999999999998877655444333221 1 235778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcc
Q psy15907 163 GVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSACVPIIMIYSIDDCRPLGEDPT 227 (260)
Q Consensus 163 Gi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~ 227 (260)
|++||++|.+|++.+++.++++++...++|.|+ .+.+++++++.+.. ..++..+.|++..
T Consensus 207 Gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~---~iggl~~g~~~~~~--~~~~~~G~g~~~i 266 (378)
T cd03682 207 GIIFGLAGRLFAELLHFLKKLLKKRIKNPYLRP---FVGGLLIILLVYLL--GSRRYLGLGTPLI 266 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHH---HHHHHHHHHHHHHh--cCCccccCCHHHH
Confidence 999999999999999999988877655555443 45566666665432 1355667776544
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=99.96 E-value=1.4e-28 Score=232.47 Aligned_cols=196 Identities=13% Similarity=0.155 Sum_probs=145.5
Q ss_pred CccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHH
Q psy15907 3 RLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAA 82 (260)
Q Consensus 3 ~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaa 82 (260)
++++.+....|++++.+++++|+|+|||||+||+||+++++++|+ + +++.++|+++.||+|||+||
T Consensus 93 ~~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~-----------~---~~~~~~~~l~~~gaAaGiaA 158 (414)
T PRK03655 93 APVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGAR-----------L---LPRVNRMDWTILASAGTIGA 158 (414)
T ss_pred CCCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHH-----------h---ccCCChhHHHHHHHHHHHHH
Confidence 356778999999999999999999999999999999999999974 1 23456778899999999999
Q ss_pred HhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHHHH
Q psy15907 83 AFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVGA 162 (260)
Q Consensus 83 aF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ill 162 (260)
+||||++|++|++||+.+++..+ .|+..+++++++.++..+.+...+.. +.+ +++.. ...+..+++.++++
T Consensus 159 aFnaPLaG~lFa~E~l~~~~~~~-~~~~~~~~v~aa~~a~~v~~~~~~~~--~~~----~~~~~--~~~~~~~~~~~l~l 229 (414)
T PRK03655 159 LFGTPVAAALIFSQTLNGSNEVP-LWDRLFAPLMAAAAGALTTGLFFHPH--FSL----PIAHY--GQMEMTDILSGAIV 229 (414)
T ss_pred HhCchHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHhCCCC--cce----ecCCC--CCCCHHHHHHHHHH
Confidence 99999999999999998766432 34455666777777777766654432 221 11111 24566788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCccc
Q psy15907 163 GVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSACVPIIMIYSIDDCRPLGEDPTE 228 (260)
Q Consensus 163 Gi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~~ 228 (260)
|+++|++|.+|++...+.++++++.+. ++.+ ..+.+++.+++++. .-++..+.||+..+
T Consensus 230 gi~~gl~G~lf~~~~~~~~~~~~~~~~-p~~~---~~lgGl~vg~l~l~---~~~~~~g~Gy~~i~ 288 (414)
T PRK03655 230 AAIAIAAGMVAVWCLPRLHALMHRLKN-PVLV---LGIGGFILGILGVI---GGPLTLFKGLDEMQ 288 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-chHH---HHHHHHHHHHHHHH---hCCccccCCHHHHH
Confidence 999999999999999888877765443 2222 23455555665532 23667888877543
No 19
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.52 E-value=8.2e-14 Score=131.18 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=91.5
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHHH
Q psy15907 4 LVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAAA 83 (260)
Q Consensus 4 ~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaaa 83 (260)
.+++..++.|++.+.+++++|.+.|+|+|++++||++|..+++. + +..+.+.++.+|+||+++++
T Consensus 281 ~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~-----------~----~~~~~~~~a~~G~aA~laa~ 345 (390)
T cd01034 281 GLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAAL-----------L----GSVSQGALVLLGMAAFLAGV 345 (390)
T ss_pred cccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHH-----------h----cCCCchHHHHHHHHHHHHHH
Confidence 35667889999999999999999999999999999999999873 2 22467899999999999999
Q ss_pred hccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q psy15907 84 FGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYG 130 (260)
Q Consensus 84 F~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g 130 (260)
+|||+++++|++|++.+ ++.++|.++++++++.+.+.+.+
T Consensus 346 ~~aPlt~~vl~~Elt~~-------~~~l~p~lia~~~A~~v~~~~~~ 385 (390)
T cd01034 346 TQAPLTAFVIVMEMTGD-------QQMLLPLLAAALLASGVSRLVCP 385 (390)
T ss_pred HcccHHHHHHHHHHhCC-------hhhHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999862 34688999999999988876643
No 20
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.47 E-value=2.8e-13 Score=127.55 Aligned_cols=105 Identities=21% Similarity=0.199 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHHHhcc
Q psy15907 7 IKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAAAFGA 86 (260)
Q Consensus 7 ~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaaaF~A 86 (260)
+..++.|++.+.+++++|.+.|+|+|++++|+++|..+++. ++...++.+.+.++.+|+||.+++++||
T Consensus 282 l~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~-----------~~~~~p~~~~~~~a~~GmaA~laa~~~a 350 (388)
T cd01033 282 LILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIV-----------WNALLPPLSIAAFALIGAAAFLAATQKA 350 (388)
T ss_pred HHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHH-----------HHHhCCcccHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999999999999999999999999874 2222234556789999999999999999
Q ss_pred chhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy15907 87 PVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAY 128 (260)
Q Consensus 87 PlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~ 128 (260)
|+++++|++|+... .++.++|.++++++++.+.+.+
T Consensus 351 Plt~ivl~~Eltg~------~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 351 PLTALILVLEFTRQ------NPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHHHhCC------CHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998541 3467899999999999887643
No 21
>PRK05277 chloride channel protein; Provisional
Probab=99.31 E-value=9.4e-12 Score=118.90 Aligned_cols=104 Identities=21% Similarity=0.354 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHHHhccch
Q psy15907 9 TLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAAAFGAPV 88 (260)
Q Consensus 9 ~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaaaF~APl 88 (260)
.++.|++.+.+++++|.+.|.|+|++++||++|..+++... .+++ ..+.+...+..+|++|++++++|+|+
T Consensus 301 ~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~-------~~~p--~~~~~~~~~a~~G~aA~la~~~~aPl 371 (438)
T PRK05277 301 IFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAA-------ALFP--QYHIEPGTFAIAGMGALFAATVRAPL 371 (438)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-------HHcC--cccccHHHHHHHHHHHHHHHHHHhHH
Confidence 57899999999999999999999999999999998886311 0111 12445668899999999999999999
Q ss_pred hhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy15907 89 GGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAY 128 (260)
Q Consensus 89 gG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~ 128 (260)
++++|++|... .+..++|.++++++++.+.+.+
T Consensus 372 t~~v~~~Eltg-------~~~~l~p~lia~~~A~~v~~~~ 404 (438)
T PRK05277 372 TGIVLVLEMTD-------NYQLILPLIITCLGATLLAQFL 404 (438)
T ss_pred HHHHHHHHHhC-------ChhhHHHHHHHHHHHHHHHHHh
Confidence 99999999764 2356889999999999887754
No 22
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.28 E-value=1.5e-11 Score=115.35 Aligned_cols=97 Identities=22% Similarity=0.297 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhc-c-cCchhhHHHHHhhhHHHHHHHhc
Q psy15907 8 KTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKY-F-REDHEKRDFVSGGAAAGVAAAFG 85 (260)
Q Consensus 8 ~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~-~-~~~~~~r~ll~aGaaAGlaaaF~ 85 (260)
..++.|++.+.+++++|.+.|+|+|++++|+.+|..+++. ++. + .++.+.+.++.+|++|++++++|
T Consensus 285 ~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~-----------~~~~~~~~~~~~~~~~~~G~aa~la~~~~ 353 (383)
T cd00400 285 LLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLL-----------LPALFPGLVASPGAYALVGMAALLAAVLR 353 (383)
T ss_pred HHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH-----------HHHhCCcccCChHHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999999999874 221 1 13456789999999999999999
Q ss_pred cchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHH
Q psy15907 86 APVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLN 122 (260)
Q Consensus 86 APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~ 122 (260)
+|+++++|++|++.+ .+.+.|.++++++++
T Consensus 354 aPlt~~vl~~Eltg~-------~~~l~p~~ia~~ia~ 383 (383)
T cd00400 354 APLTAILLVLELTGD-------YSLLLPLMLAVVIAY 383 (383)
T ss_pred chHHHHHHHHHHhCC-------hhhHHHHHHHHHhcC
Confidence 999999999998752 256888888887753
No 23
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.23 E-value=6.6e-11 Score=116.63 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccC-c-hhhHHHHHhhhHHHHHHHhcc
Q psy15907 9 TLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFRE-D-HEKRDFVSGGAAAGVAAAFGA 86 (260)
Q Consensus 9 ~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~-~-~~~r~ll~aGaaAGlaaaF~A 86 (260)
.++.|++.+.+++++|.+.|.++|+.++||++|..+++. ++.+.+ . .+.-.+..+|+||.+|+++||
T Consensus 319 ~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~-----------~~~~~~~~~~~~~~~a~vGmaa~~aa~~~a 387 (574)
T PRK01862 319 VLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLA-----------MHALWPGHTSAPFAYAMVGMGAFLAGATQA 387 (574)
T ss_pred HHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHH-----------HHHhCCCcccchHHHHHHHHHHHHHHHHcc
Confidence 457999999999999999999999999999999999874 221111 1 222347889999999999999
Q ss_pred chhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q psy15907 87 PVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYG 130 (260)
Q Consensus 87 PlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g 130 (260)
|++++++++|.+. .+..++|.++++++++.+.+.+..
T Consensus 388 Plt~i~l~~Elt~-------~~~~~~P~~ia~~~a~~v~~~~~~ 424 (574)
T PRK01862 388 PLMAILMIFEMTL-------SYQVVLPLMVSCVVAYFTARALGT 424 (574)
T ss_pred HHHHHHHHHHHhC-------CHhHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999864 235688999999999988775543
No 24
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.20 E-value=1.2e-10 Score=110.86 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhc-ccCchhhH-HHHHhhhHHHHHHHhccc
Q psy15907 10 LVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKY-FREDHEKR-DFVSGGAAAGVAAAFGAP 87 (260)
Q Consensus 10 l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~-~~~~~~~r-~ll~aGaaAGlaaaF~AP 87 (260)
++.|++.+.+++++|.+.|.+.|+.++|+++|..+++. +.. +.+..+.+ .+..+|+||.+++++|||
T Consensus 302 ~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~-----------~~~~~~~~~~~~~~~a~vGmaA~laa~~~aP 370 (418)
T PRK01610 302 FLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRS-----------LGLWLPDGEEITLLLGLTGMATLLAATTHAP 370 (418)
T ss_pred HHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH-----------HHHhCCCcccchHHHHHHHHHHHHHHHHccH
Confidence 57899999999999999999999999999999999874 221 11223333 455799999999999999
Q ss_pred hhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q psy15907 88 VGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYG 130 (260)
Q Consensus 88 lgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g 130 (260)
++++++++|.+.. +..+.|.++|+++++.+.+.+.+
T Consensus 371 ltaivl~~Eltg~-------~~~~~p~~ia~~ia~~vs~~~~~ 406 (418)
T PRK01610 371 IMSTLMICEMTGE-------YQLLPGLLIACVIASVISRTLRR 406 (418)
T ss_pred HHHHHHHHHHhCC-------HhHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999998642 24478889999999988875544
No 25
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.16 E-value=1.8e-10 Score=108.15 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=84.5
Q ss_pred CccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHH
Q psy15907 3 RLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAA 82 (260)
Q Consensus 3 ~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaa 82 (260)
+.++....+.|.+.+.+++++|.+.|.|.|++++|+++|..+++. ++ .+...++.+|++|.+++
T Consensus 273 ~~~~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~-----------~~-----~~~~~~~~~Gmaa~laa 336 (378)
T cd03682 273 GTVYPYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPI-----------LG-----LPVSLLAALGFVAVFAG 336 (378)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHH-----------HC-----CCHHHHHHHHHHHHHHH
Confidence 345567789999999999999999999999999999999999973 22 12347889999999999
Q ss_pred HhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHH
Q psy15907 83 AFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVL 125 (260)
Q Consensus 83 aF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~ 125 (260)
++|||++++++++|.+.. ..+.|.++++++++.+.
T Consensus 337 ~~raPlt~ivl~~Eltg~--------~~~~p~~ia~~ia~~~~ 371 (378)
T cd03682 337 ATNTPLACIIMGIELFGA--------ENAPYFFIACLVAYLFS 371 (378)
T ss_pred HhcchHHHHHHHHHHhCc--------cchHHHHHHHHHHHHHh
Confidence 999999999999999862 23779999999988775
No 26
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.12 E-value=4.2e-10 Score=106.40 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHHHhccch
Q psy15907 9 TLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAAAFGAPV 88 (260)
Q Consensus 9 ~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaaaF~APl 88 (260)
.++.|++.+.+++++|.+.|...|++.+||++|..+++... .+++ .+..+...+..+|+||.+++++|+|+
T Consensus 288 ~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~-------~~~~--~~~~~~~~~a~~G~aa~~a~~~~aPl 358 (402)
T cd01031 288 IFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILV-------QLGP--IPISAPATFAIAGMAAFFAAVVRAPI 358 (402)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH-------HhcC--cccccHHHHHHHHHHHHHHHHHhhhH
Confidence 45799999999999999999999999999999999987421 0111 13456778999999999999999999
Q ss_pred hhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15907 89 GGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYY 129 (260)
Q Consensus 89 gG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~ 129 (260)
+++++++|.+.+ ++.++|.++++++++.+.+.+.
T Consensus 359 ta~vl~~Eltg~-------~~~l~p~~ia~~ia~~v~~~~~ 392 (402)
T cd01031 359 TAIILVTEMTGN-------FNLLLPLMVVCLVAYLVADLLG 392 (402)
T ss_pred HHHHHHHHHhCC-------HhHHHHHHHHHHHHHHHHHHhC
Confidence 999999997652 3568999999999998877554
No 27
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=98.50 E-value=6.4e-07 Score=83.47 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCc---hhhHHHHHhhhHHHHHHHhc
Q psy15907 9 TLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFRED---HEKRDFVSGGAAAGVAAAFG 85 (260)
Q Consensus 9 ~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~---~~~r~ll~aGaaAGlaaaF~ 85 (260)
..+.|++.+.+++++|.+.|.-.|+.-+|+++|..+++. ++...++ .+...+..+|++|-++++-|
T Consensus 252 ~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~-----------~~~~~~~~~~~~~~~~al~G~~a~~~a~~~ 320 (355)
T PF00654_consen 252 LFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGAL-----------LGSFFPGISSVDPGVYALVGMAAFLAAVTR 320 (355)
T ss_dssp HHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHH-----------HHHH-GGG-T-SHHHHHHHHTTHHHHHHCS
T ss_pred HHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHH-----------HHhhCCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999874 2221111 14568899999999999999
Q ss_pred cchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHH
Q psy15907 86 APVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLS 126 (260)
Q Consensus 86 APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~ 126 (260)
+|++.+++.+|...+ ++.++|.++++++++.+.+
T Consensus 321 ~Plt~~vl~~Eltg~-------~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 321 APLTAIVLVLELTGD-------FQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp -HHHHHHHHHHHH---------GGGHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHhC
Confidence 999999999999862 2457888889988887764
No 28
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=98.48 E-value=1.1e-06 Score=84.27 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccC--chhhHHHHHhhhHHHHHHHhc
Q psy15907 8 KTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFRE--DHEKRDFVSGGAAAGVAAAFG 85 (260)
Q Consensus 8 ~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~--~~~~r~ll~aGaaAGlaaaF~ 85 (260)
-.++.|.+.+.++++||.+.|.--|+.-+|+++|..+++.. +...+ ..+.-.+..+|++|-++++-|
T Consensus 314 ~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~-----------~~~~~~~~~~~~~~al~Gm~a~la~~~~ 382 (443)
T COG0038 314 LLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALL-----------GLLFPPSILEPGLFALLGMAAFLAATTR 382 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHH-----------HhhcCccccchHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999998632 11111 334457889999999999999
Q ss_pred cchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q psy15907 86 APVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYG 130 (260)
Q Consensus 86 APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g 130 (260)
+|++++++++|.+.. .+.++|.++++++++.+.+...+
T Consensus 383 aPlta~vlv~EmTg~-------~~~~l~ll~a~~ia~~~~~~~~~ 420 (443)
T COG0038 383 APLTAIVLVLEMTGN-------YQLLLPLLIACLIAYLVSRLLGG 420 (443)
T ss_pred ccHHHHHHHHHHhCC-------cchHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999873 23577888888888887776554
No 29
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=98.40 E-value=1.5e-06 Score=82.65 Aligned_cols=107 Identities=14% Similarity=0.022 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcc------cCchhhHHHHHhhhHHHHHH
Q psy15907 9 TLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYF------REDHEKRDFVSGGAAAGVAA 82 (260)
Q Consensus 9 ~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~------~~~~~~r~ll~aGaaAGlaa 82 (260)
.++.|++.+.+++++|.+.|.-.|+.-+||++|..+++.... +++.. ....+...+..+|+||-+++
T Consensus 299 ~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~ 371 (416)
T cd01036 299 FLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHR-------IAVAGIGAESATLWADPGVYALIGAAAFLGG 371 (416)
T ss_pred HHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHH-------HccccccccccCCccChHHHHHHHHHHHhhh
Confidence 467899999999999999999999999999999998864210 01100 01234457889999999999
Q ss_pred HhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15907 83 AFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYY 129 (260)
Q Consensus 83 aF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~ 129 (260)
+.|+|++++++.+|...+ ++.++|.++++++++.+.+.+.
T Consensus 372 ~~r~Plt~~vi~~ElTg~-------~~~l~pl~ia~~ia~~v~~~~~ 411 (416)
T cd01036 372 TTRLTFSICVIMMELTGD-------LHHLLPLMVAILIAKAVADAFC 411 (416)
T ss_pred hhcchHhhhhheeeccCC-------hhhHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999863 3468899999999998877554
No 30
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=98.36 E-value=2.6e-06 Score=82.30 Aligned_cols=103 Identities=17% Similarity=0.037 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHHHhccchh
Q psy15907 10 LVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAAAFGAPVG 89 (260)
Q Consensus 10 l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaaaF~APlg 89 (260)
++.|++.+.+++++|.+.|.-.|+.-+||++|..+++.... +++ ....+.-.+..+|+||=++++.|+|++
T Consensus 340 ~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~~--~~~~~~~~~aliGmaa~lag~~raPlt 410 (466)
T cd03685 340 FVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGS-------YFG--FTSIDPGLYALLGAAAFLGGVMRMTVS 410 (466)
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHH-------Hcc--ccCCCchHHHHHHHHHHHhHHhhhhHH
Confidence 46899999999999999999999999999999998863110 011 023344578999999999999999999
Q ss_pred hhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy15907 90 GVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAY 128 (260)
Q Consensus 90 G~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~ 128 (260)
++++.+|.+.. +..++|.++++++++.+...+
T Consensus 411 ~iviv~ElTg~-------~~~l~pl~ia~~iA~~va~~~ 442 (466)
T cd03685 411 LTVILLELTNN-------LTYLPPIMLVLMIAKWVGDYF 442 (466)
T ss_pred HHHHhhhhcCC-------hhhHHHHHHHHHHHHHHHHHh
Confidence 99999999873 356889999999999887764
No 31
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=98.31 E-value=2e-06 Score=82.66 Aligned_cols=111 Identities=16% Similarity=0.072 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhc---c------cCchhhHHHHHhhhHHH
Q psy15907 9 TLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKY---F------REDHEKRDFVSGGAAAG 79 (260)
Q Consensus 9 ~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~---~------~~~~~~r~ll~aGaaAG 79 (260)
.++.|++.+.+++++|.+.|.-.|+.-+||++|..++...+... ..+.. + .++.+.-.+..+|+||-
T Consensus 310 ~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~ 385 (445)
T cd03684 310 ALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLA----YSYPDSIFFACCTAGPSCITPGLYAMVGAAAF 385 (445)
T ss_pred HHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHH----hhCCcccccccccCCCCccCchHHHHHHHHHH
Confidence 36899999999999999999999999999999999887421000 00000 0 01123347889999999
Q ss_pred HHHHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q psy15907 80 VAAAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYG 130 (260)
Q Consensus 80 laaaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g 130 (260)
++++.|+|+.++++.+|.... ++.+.|.++++++++.+.+.+..
T Consensus 386 ~a~~~raPlt~ivlv~ElTg~-------~~~l~pl~ia~~iA~~vs~~~~~ 429 (445)
T cd03684 386 LGGVTRMTVSLVVIMFELTGA-------LNYILPLMIAVMVSKWVADAIGK 429 (445)
T ss_pred hcchhccchhhhheeeeccCC-------cccHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999863 23578888999999988775543
No 32
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=98.05 E-value=1.7e-05 Score=75.82 Aligned_cols=106 Identities=16% Similarity=0.078 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhc---c--cCchhhHHHHHhhhHHHHHHH
Q psy15907 9 TLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKY---F--REDHEKRDFVSGGAAAGVAAA 83 (260)
Q Consensus 9 ~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~---~--~~~~~~r~ll~aGaaAGlaaa 83 (260)
.++.|++.+.+++++|.+.|.-.|+.-+||++|..++.... .+++. . ....+.-.+..+|+||-++++
T Consensus 298 ~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~-------~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~ 370 (426)
T cd03683 298 FIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMA-------VLFPEGIRGGISNPIGPGGYAVVGAAAFSGAV 370 (426)
T ss_pred HHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHH-------HHcCcccccCCCCCcCchHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999876310 00110 0 011234578899999999999
Q ss_pred hccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15907 84 FGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYY 129 (260)
Q Consensus 84 F~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~ 129 (260)
.|+|...+ +.+|.+.. .+.++|.++++++++.+.+.+.
T Consensus 371 ~ra~~t~v-lv~E~Tg~-------~~~llpl~ia~~ia~~v~~~~~ 408 (426)
T cd03683 371 THTVSVAV-IIFELTGQ-------ISHLLPVLIAVLISNAVAQFLQ 408 (426)
T ss_pred HhHHHHHh-eeeeecCC-------cchHHHHHHHHHHHHHHHHhhC
Confidence 99999764 89999863 2458899999999998877553
No 33
>PRK03655 putative ion channel protein; Provisional
Probab=97.94 E-value=5.6e-05 Score=72.05 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHHHhc----
Q psy15907 10 LVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAAAFG---- 85 (260)
Q Consensus 10 l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaaaF~---- 85 (260)
.+.|++.+.++.+||.+.|.-.|+.-+|+.+|..+++. + ++.+....++++++|-++++-+
T Consensus 305 ~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l-----------~----p~~~~~~~v~~~m~a~la~vtr~p~~ 369 (414)
T PRK03655 305 AVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH-----------V----PAVPAAITVSCAILGIVLVVTRDGWL 369 (414)
T ss_pred HHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh-----------c----cCCChHHHHHHHHHHHHHHHhccchh
Confidence 56999999999999999999999999999999999863 1 3455667889999999999999
Q ss_pred cchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Q psy15907 86 APVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVV 124 (260)
Q Consensus 86 APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v 124 (260)
+|+.+++.++|.. ++|-+++++++..+
T Consensus 370 sp~ta~viv~em~------------~~~l~~~~~~~~~~ 396 (414)
T PRK03655 370 SLFMAAVVVPDTT------------LLPLLCIVMLPAWL 396 (414)
T ss_pred hHHHHHHHHhcch------------HHHHHHHHHHHHHH
Confidence 6999999999875 55666666665544
No 34
>KOG0475|consensus
Probab=94.24 E-value=0.061 Score=53.23 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCC-CcchhhhhcccCchhhHHHHHhhhHHHHHHHhcc
Q psy15907 8 KTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSF-GTDFQIFKYFREDHEKRDFVSGGAAAGVAAAFGA 86 (260)
Q Consensus 8 ~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~-~~~~~~f~~~~~~~~~r~ll~aGaaAGlaaaF~A 86 (260)
..++.|++.++.+-|++.+.|.--|++-+||+.|..++-..-... +.++.+|. .+-......-..|+||-++.+-+-
T Consensus 404 ~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg--~~ci~Pg~Ya~vGaAA~LsGvtrl 481 (696)
T KOG0475|consen 404 LALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFG--LSCATPGAYALVGAAATLSGVTRL 481 (696)
T ss_pred HHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccccc--hhhcCchHHHHHHHHHHhcCccee
Confidence 457799999999999999999999999999999988873210000 01122221 111223456778999999999999
Q ss_pred chhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy15907 87 PVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAY 128 (260)
Q Consensus 87 PlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~ 128 (260)
|++-|+--.|.+.. .+.++|.++|+.++..+....
T Consensus 482 tvtlVVImFELTG~-------l~~IlPlm~av~~SkwI~d~~ 516 (696)
T KOG0475|consen 482 TVTLVVIMFELTGA-------LNYILPLMLAVMISKWIGDGL 516 (696)
T ss_pred eEEEEEEeeeccCc-------ceeHHHHHHHHHHHHHHHhcc
Confidence 99999999999863 245789999998888876544
No 35
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=75.30 E-value=3.1 Score=23.81 Aligned_cols=24 Identities=50% Similarity=0.783 Sum_probs=19.9
Q ss_pred hhhHHHHHhhhHHHHHHHhccchh
Q psy15907 66 HEKRDFVSGGAAAGVAAAFGAPVG 89 (260)
Q Consensus 66 ~~~r~ll~aGaaAGlaaaF~APlg 89 (260)
-.||+++-.+++++.++++..+.+
T Consensus 2 ~sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred CcHHHHHHHHHHHHHHHHhccccC
Confidence 358999999999999999887754
No 36
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=71.18 E-value=6.6 Score=31.24 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15907 157 FFYVGAGVFGGLTGALY 173 (260)
Q Consensus 157 ~~~illGi~~Gl~g~lF 173 (260)
+..|++|+++|++|.++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 46888999999999775
No 37
>PRK09917 hypothetical protein; Provisional
Probab=63.15 E-value=26 Score=28.93 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccc
Q psy15907 105 SLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSG 139 (260)
Q Consensus 105 ~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~ 139 (260)
+..+.+++.+++-++.+....+..+-+...|..|+
T Consensus 58 ~~~~asfiaa~~igl~s~~~Ar~~k~P~tvf~ip~ 92 (157)
T PRK09917 58 NIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAA 92 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCEEeeHhh
Confidence 45566677777777777766665444433344443
No 38
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=53.80 E-value=15 Score=23.46 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=10.3
Q ss_pred CchhhHHHH--HhhhHHHHHHH
Q psy15907 64 EDHEKRDFV--SGGAAAGVAAA 83 (260)
Q Consensus 64 ~~~~~r~ll--~aGaaAGlaaa 83 (260)
.+.+||+++ +.++.++++++
T Consensus 7 ~~~~RRdFL~~at~~~gavG~~ 28 (41)
T PF10399_consen 7 VDPTRRDFLTIATSAVGAVGAA 28 (41)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHH
Confidence 456677655 66666666554
No 39
>PRK10490 sensor protein KdpD; Provisional
Probab=46.78 E-value=1.8e+02 Score=30.69 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=44.0
Q ss_pred hhHHHHHHHhccchh----hhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCC
Q psy15907 75 GAAAGVAAAFGAPVG----GVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLR 150 (260)
Q Consensus 75 GaaAGlaaaF~APlg----G~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~ 150 (260)
+++..++..|..+++ .++|-+=++..-+ +....|+++|++.+.+.+..++- .|.| .|... .+
T Consensus 410 ~~~t~l~~~l~~~l~~~ni~mlyll~Vll~A~-----~~G~~pai~aavls~l~~nfFF~-~P~~------Tf~v~--~~ 475 (895)
T PRK10490 410 ALITLIAMQWLPAFDAANLVMLYLLGVVVVAL-----FYGRWPSVVATVINVASFDLFFV-APRG------TLAVS--DV 475 (895)
T ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH-----HhchHHHHHHHHHHHHHHHheeC-CCce------EEEEc--Cc
Confidence 344444455554433 3556555543211 12355777777777766665543 2332 23221 13
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHH
Q psy15907 151 YDLLEMFFYVGAGVFGGLTGALYN 174 (260)
Q Consensus 151 ~~~~~l~~~illGi~~Gl~g~lF~ 174 (260)
-++..+..++++|++.|.+..-..
T Consensus 476 ~~~~t~~v~l~va~v~~~l~~r~r 499 (895)
T PRK10490 476 QYLLTFAVMLTVGLVIGNLTAGVR 499 (895)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777765554443
No 40
>PF12821 DUF3815: Protein of unknown function (DUF3815); InterPro: IPR024528 This domain is found in uncharacterised predicted membrane proteins.
Probab=44.91 E-value=72 Score=25.07 Aligned_cols=57 Identities=7% Similarity=0.033 Sum_probs=31.6
Q ss_pred chhhHHHHHhhhHHHHHHHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy15907 65 DHEKRDFVSGGAAAGVAAAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHP 132 (260)
Q Consensus 65 ~~~~r~ll~aGaaAGlaaaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~ 132 (260)
+..||++..++..++++=.-+- +..+ +.......+++++++.++.+....+..+.+.
T Consensus 18 ~~~~r~l~~~~l~g~~~~~v~~------~~~~-----~~~~~~~a~f~aa~~vg~~~~~~ar~~~~P~ 74 (130)
T PF12821_consen 18 NAPRRALPWAGLIGALGWLVYL------LLSA-----FGLGSFVATFVAAFVVGLLAELFARRLKAPA 74 (130)
T ss_pred CCcHHHHHHHHHHHHHHHHHHH------HHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 3445667777766666543221 1111 1223455667777777777777766554433
No 41
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=43.50 E-value=1.3e+02 Score=23.11 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy15907 107 TWRIFFGTIVTTFTLNVVLS 126 (260)
Q Consensus 107 ~~~~~~~~~ias~~~~~v~~ 126 (260)
-|...+|.+++.+.+..+..
T Consensus 49 G~~~v~pil~G~~lG~WLD~ 68 (100)
T TIGR02230 49 GWSVAIPTLLGVAVGIWLDR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45566777778777776654
No 42
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=42.28 E-value=2.2e+02 Score=26.55 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q psy15907 107 TWRIFFGTIVTTFTLNVVLSAYY 129 (260)
Q Consensus 107 ~~~~~~~~~ias~~~~~v~~~~~ 129 (260)
..|.+.++++++.++-.+...+.
T Consensus 280 ~~r~~~~~~iG~avgG~~~~~~g 302 (346)
T TIGR01427 280 PKRVIPACIIGSAVTGAISMAFG 302 (346)
T ss_pred cchHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888888777665544
No 43
>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Probab=39.98 E-value=2.6e+02 Score=27.35 Aligned_cols=48 Identities=6% Similarity=0.057 Sum_probs=28.4
Q ss_pred HhhhHHHHHHHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15907 73 SGGAAAGVAAAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYY 129 (260)
Q Consensus 73 ~aGaaAGlaaaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~ 129 (260)
..+.+|++++.|+ -===++|.+-.-. -+.|+++++++.++-.+....+
T Consensus 370 ~~a~sa~isa~~G-ITEPaiYGV~L~~--------kkpfi~~~igg~iGG~~~g~~~ 417 (473)
T PRK11007 370 EISVPAAISAYLG-VTEPAMYGINLKY--------RFPMLCAMIGSALAGLICGLNG 417 (473)
T ss_pred HHHHHHHHHHHhc-CCchhhhheechh--------hHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667777764 1222445444322 2468888888888877766554
No 44
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=35.94 E-value=78 Score=23.93 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=28.5
Q ss_pred hhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHH
Q psy15907 89 GGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLS 126 (260)
Q Consensus 89 gG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~ 126 (260)
+++.|.=-.+.++++-...|..++.++++++.++.+.+
T Consensus 40 ~~~f~~Q~~iqrrlpYp~q~~~LVS~v~~sv~sY~vT~ 77 (94)
T PF15110_consen 40 GATFFLQKAIQRRLPYPFQWNILVSVVVASVASYQVTR 77 (94)
T ss_dssp GHHHHHHHHHHTTSSSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHhhhhhhhhhh
Confidence 44445555566777778899999999999999998876
No 45
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=34.09 E-value=4.3e+02 Score=25.68 Aligned_cols=47 Identities=9% Similarity=0.074 Sum_probs=28.6
Q ss_pred hhhHHHHHHHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15907 74 GGAAAGVAAAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYY 129 (260)
Q Consensus 74 aGaaAGlaaaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~ 129 (260)
.+.+|++++.|+ -==.++|.+-.-.+ +.++++++++.++-.+...+.
T Consensus 371 ~a~sa~is~~~G-ITEPaiyGv~l~~k--------kp~i~~~ig~~igG~~~g~~g 417 (462)
T TIGR01992 371 LSLTSAISAYLG-VTEPAMFGVNLKYK--------FPFIAAMIGSGLAGLLSGLNG 417 (462)
T ss_pred HHHHHHHHHHhc-cchHhHHHhccchh--------hHHHHHHHHHHHHHHHHHHhc
Confidence 456677777775 23345566655321 347788888877777665443
No 46
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.94 E-value=2.4e+02 Score=24.01 Aligned_cols=29 Identities=38% Similarity=0.413 Sum_probs=19.9
Q ss_pred HHHHHhhhHHHHHHHhccchhhhHHHhhcc
Q psy15907 69 RDFVSGGAAAGVAAAFGAPVGGVLFSLEEG 98 (260)
Q Consensus 69 r~ll~aGaaAGlaaaF~APlgG~lFalE~~ 98 (260)
+.-+++|.|+|+.++|- |.=|.=+++-.+
T Consensus 43 phsvA~gvAaG~faaf~-Pf~g~h~iiAa~ 71 (184)
T COG3216 43 PHSVAAGVAAGVFAAFF-PFFGLHMIIAAV 71 (184)
T ss_pred chHHHHHHHHHHHHHhc-ccchHHHHHHHH
Confidence 45689999999999994 644444444443
No 47
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=31.31 E-value=3e+02 Score=22.70 Aligned_cols=34 Identities=9% Similarity=-0.082 Sum_probs=21.2
Q ss_pred chhhHHHHHhhhHHHHHHHhccchhhhHHHhhccc
Q psy15907 65 DHEKRDFVSGGAAAGVAAAFGAPVGGVLFSLEEGA 99 (260)
Q Consensus 65 ~~~~r~ll~aGaaAGlaaaF~APlgG~lFalE~~~ 99 (260)
.++...=++.|.++|+-..|- |+-|.-+.+-...
T Consensus 12 ~~~tP~~iA~g~a~Gvf~g~~-P~~glh~~~~~~l 45 (154)
T TIGR03546 12 SNTSPAQLALAVALGMILGLT-PFLNLHNIALLFL 45 (154)
T ss_pred CCCCHHHHHHHHHHHHHHHhc-cchhHHHHHHHHH
Confidence 344445577788888888874 5555555554443
No 48
>KOG0476|consensus
Probab=30.68 E-value=31 Score=35.69 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhH-HHHHhhhHHHHHHHhccch
Q psy15907 10 LVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKR-DFVSGGAAAGVAAAFGAPV 88 (260)
Q Consensus 10 l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r-~ll~aGaaAGlaaaF~APl 88 (260)
.+.|++.++++.--=.+.|--=|.--+||++|..+++.....+....+--. ....-.. .....|||| ++++-.=-+
T Consensus 449 ~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~g--i~~~I~PG~YAVVGAAA-fsGaVTHTv 525 (931)
T KOG0476|consen 449 FLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGG--ITPPIHPGGYAVVGAAA-FSGAVTHTV 525 (931)
T ss_pred HHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCC--ccCccccchhhhhhhhh-hccceeeee
Confidence 356788888888777888999999999999999998754322221111000 0000111 233445544 444444446
Q ss_pred hhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy15907 89 GGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAY 128 (260)
Q Consensus 89 gG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~ 128 (260)
.-++-+.|.+.. ..-++|.++|.++++.+...+
T Consensus 526 SvAVIifElTGQ-------l~hiLPVmIAVllaNAVa~~L 558 (931)
T KOG0476|consen 526 SVAVIIFELTGQ-------LCHILPVMIAVLLANAVAASL 558 (931)
T ss_pred eEEEEEEeeccc-------hHHHHHHHHHHHHHHHHHHHh
Confidence 777778888752 234789999999988886643
No 49
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=30.24 E-value=1e+02 Score=21.71 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15907 159 YVGAGVFGGLTGALYN 174 (260)
Q Consensus 159 ~illGi~~Gl~g~lF~ 174 (260)
.++++++.|+++..|.
T Consensus 2 ~iilali~G~~~Gff~ 17 (64)
T PF03672_consen 2 LIILALIVGAVIGFFI 17 (64)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3566677777776666
No 50
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.31 E-value=1.7e+02 Score=20.91 Aligned_cols=19 Identities=16% Similarity=0.476 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15907 156 MFFYVGAGVFGGLTGALYN 174 (260)
Q Consensus 156 l~~~illGi~~Gl~g~lF~ 174 (260)
.++.++++++.|++|..|.
T Consensus 6 ail~ivl~ll~G~~~G~fi 24 (71)
T COG3763 6 AILLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888776
No 51
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=28.45 E-value=1.3e+02 Score=22.43 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy15907 166 GGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSACVPIIMIYSIDDCRPL 222 (260)
Q Consensus 166 ~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~~i~~~~~~~~~~~~~~ 222 (260)
+-.+|..++...++--.++++...+++++...-.++.+++..+.........+..+.
T Consensus 35 a~~~~~~~~f~ln~~~tF~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 91 (117)
T PF04138_consen 35 AFIVAIIFNFILNRRFTFRSRGRSSRWRQFLRFFVVYLLGLLLNTLILWLLVDWLGI 91 (117)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 334455555554443334444332225555555555555555555554444444443
No 52
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=28.38 E-value=6.4e+02 Score=26.76 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=31.7
Q ss_pred HhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q psy15907 83 AFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYG 130 (260)
Q Consensus 83 aF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g 130 (260)
.|+...-.++|-+-++.. -.|....|+++|++++.+++..++-
T Consensus 419 ~~~~~ni~mvFllgVlv~-----av~~g~~pa~~aailsvl~fNyFF~ 461 (890)
T COG2205 419 FFDLANIVMLFLLGVLVV-----AVLTGRWPAVLAALLSVLVFNYFFT 461 (890)
T ss_pred hccchhHHHHHHHHHHHH-----HHHhchHHHHHHHHHHHHHHhheec
Confidence 478888899999988863 2334677888888888877766553
No 53
>PRK01844 hypothetical protein; Provisional
Probab=28.17 E-value=2.1e+02 Score=20.55 Aligned_cols=19 Identities=5% Similarity=0.076 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15907 156 MFFYVGAGVFGGLTGALYN 174 (260)
Q Consensus 156 l~~~illGi~~Gl~g~lF~ 174 (260)
.+..++++++.|+++.+|.
T Consensus 6 ~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 6 GILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888776
No 54
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=25.60 E-value=3.1e+02 Score=26.53 Aligned_cols=60 Identities=8% Similarity=0.040 Sum_probs=39.0
Q ss_pred CchhhHHHHHhhhHHHHHHHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHh
Q psy15907 64 EDHEKRDFVSGGAAAGVAAAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSA 127 (260)
Q Consensus 64 ~~~~~r~ll~aGaaAGlaaaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~ 127 (260)
++-..|++...|+-||++=.-.-=|++.-|.=++. ...-....++.+++|++.++.+...
T Consensus 353 ~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~----~~~aKigIL~~S~~aai~G~~~L~~ 412 (423)
T PRK14855 353 RRVNWLHMLGAGLLAGIGFTMSLFISNLAFADAAL----LTQAKLGVLAASVLAALLGAGWLWW 412 (423)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCchh----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557899999999999866554455555521211 1233445788888888888876653
No 55
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=25.52 E-value=5.7e+02 Score=25.05 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy15907 109 RIFFGTIVTTFTLNVVLSAYY 129 (260)
Q Consensus 109 ~~~~~~~ias~~~~~v~~~~~ 129 (260)
+.|+++++++.++-.+.....
T Consensus 387 kpfi~~~igg~vGG~~~g~~g 407 (472)
T PRK09796 387 RPLIASLISGFICGAVAGMAG 407 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 467888888887777665443
No 56
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=23.02 E-value=3.2e+02 Score=22.58 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccc
Q psy15907 106 LTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGL 140 (260)
Q Consensus 106 ~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l 140 (260)
..+.+++.+++-++.+....+.+..+...+.+|.+
T Consensus 56 ~~~atfiaa~~vg~lg~~~sr~~k~p~~v~~vpaI 90 (156)
T COG3610 56 IVVATFIAAFVVGCLGNLLSRRYKTPAKVFTVPAI 90 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhecchh
Confidence 45667777777777777777766665555555443
No 57
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=22.88 E-value=5.5e+02 Score=22.96 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15907 157 FFYVGAGVFGGLTGALYNSL 176 (260)
Q Consensus 157 ~~~illGi~~Gl~g~lF~~~ 176 (260)
+..++.|++-|++=..+=|.
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ 65 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRF 65 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666666665555444
No 58
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.14 E-value=3.9e+02 Score=20.92 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy15907 153 LLEMFFYVGAGVFGGLT 169 (260)
Q Consensus 153 ~~~l~~~illGi~~Gl~ 169 (260)
+|-++.+.++|.+.|++
T Consensus 74 PwglIv~lllGf~AG~l 90 (116)
T COG5336 74 PWGLIVFLLLGFGAGVL 90 (116)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34456677777766654
No 59
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=22.04 E-value=4.9e+02 Score=22.52 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15907 156 MFFYVGAGVFGGLTGALYN 174 (260)
Q Consensus 156 l~~~illGi~~Gl~g~lF~ 174 (260)
++-.++.|+++|+.=.+.-
T Consensus 127 lItlll~a~vgGfamy~my 145 (226)
T COG4858 127 LITLLLTAVVGGFAMYIMY 145 (226)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 4556677777776544433
No 60
>PF05571 DUF766: Protein of unknown function (DUF766); InterPro: IPR008485 This family consists of several eukaryotic proteins of unknown function.
Probab=20.83 E-value=1.5e+02 Score=27.12 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=27.8
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy15907 150 RYDLLEMFFYVGAGVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVS 205 (260)
Q Consensus 150 ~~~~~~l~~~illGi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it 205 (260)
+.+..|......++++-=++=..|++...+-++.+++.......-.+|..+.+++|
T Consensus 44 ~~~~YDWlYL~FmallpL~lh~~fI~~~~~~~~~~~~~i~~h~sa~lE~~laai~t 99 (296)
T PF05571_consen 44 SPELYDWLYLGFMALLPLVLHWFFIDMYAKNRKFSRKVIIQHLSAFLECVLAAILT 99 (296)
T ss_pred CCchhhHHHHHHHHHHHHHHHHheeeeecccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666566666665544433333322222223355655544433
No 61
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=20.62 E-value=2.4e+02 Score=19.67 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhHH
Q psy15907 159 YVGAGVFGGLTGALYNSLNHKLTV-FRIRYMSARYVKV 195 (260)
Q Consensus 159 ~illGi~~Gl~g~lF~~~~~~~~~-~~~~~~~~~~~~~ 195 (260)
.++..++.-.+|++..+...+..+ ++.++.+++|.|.
T Consensus 10 i~l~AlI~~pLGyl~~~~~~r~~~~lr~~l~~PRylK~ 47 (62)
T PF11120_consen 10 IILCALIFFPLGYLARRWLPRIRRTLRRRLFPPRYLKP 47 (62)
T ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHhcCccccCc
Confidence 445566777788888877666554 4444446667664
No 62
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.41 E-value=4.3e+02 Score=23.29 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15907 157 FFYVGAGVFGGLTGALYNSLNHKLTVFRI 185 (260)
Q Consensus 157 ~~~illGi~~Gl~g~lF~~~~~~~~~~~~ 185 (260)
++++++|+..|++.+.++...+.-+..+.
T Consensus 53 ~~~~i~gi~~g~l~am~vl~rra~ra~Y~ 81 (224)
T PF13829_consen 53 WYWLIIGILLGLLAAMIVLSRRAQRAAYA 81 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999866554433333
Done!