Query psy15907
Match_columns 260
No_of_seqs 198 out of 1464
Neff 7.2
Searched_HMMs 29240
Date Sat Aug 17 00:38:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ots_A Voltage-gated CLC-type 100.0 2.2E-36 7.7E-41 288.3 22.0 200 4-229 122-322 (465)
2 4ene_A CLC-EC1, H(+)/CL(-) exc 100.0 6.3E-36 2.2E-40 283.9 21.8 199 4-229 106-307 (446)
3 3nd0_A SLL0855 protein; CLC fa 100.0 5.7E-36 1.9E-40 285.5 19.6 197 4-229 118-314 (466)
4 3org_A CMCLC; transporter, tra 100.0 2.2E-33 7.4E-38 276.7 15.0 186 2-206 97-284 (632)
5 4ene_A CLC-EC1, H(+)/CL(-) exc 98.5 3.6E-07 1.2E-11 86.4 10.6 105 9-129 321-425 (446)
6 1ots_A Voltage-gated CLC-type 98.5 3.7E-07 1.3E-11 86.7 10.4 105 9-129 336-440 (465)
7 3nd0_A SLL0855 protein; CLC fa 98.5 3.3E-07 1.1E-11 87.1 9.5 104 9-128 328-431 (466)
8 3org_A CMCLC; transporter, tra 98.0 1.2E-05 4E-10 79.1 8.1 101 9-128 324-425 (632)
9 2pq4_B Periplasmic nitrate red 33.6 24 0.00084 20.7 2.0 24 67-90 4-27 (35)
10 2kjf_A Carnocyclin-A; circular 33.0 55 0.0019 20.7 3.7 29 14-42 23-51 (60)
11 2l2t_A Receptor tyrosine-prote 22.3 94 0.0032 19.2 3.3 22 159-180 11-32 (44)
No 1
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=100.00 E-value=2.2e-36 Score=288.35 Aligned_cols=200 Identities=21% Similarity=0.300 Sum_probs=165.8
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHHH
Q psy15907 4 LVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAAA 83 (260)
Q Consensus 4 ~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaaa 83 (260)
..++|+++.|++++++++++|+|+|||||++|+||++|+.++|+ |+. ++++|||++++||+|||+||+
T Consensus 122 ~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~~-----------~~l-~~~~~~r~li~~GaaAGlaAa 189 (465)
T 1ots_A 122 VRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDI-----------FRL-KGDEARHTLLATGAAAGLAAA 189 (465)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHH-----------TTC-CSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHHH-----------hcc-CCHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999984 331 368889999999999999999
Q ss_pred hccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHHHHH
Q psy15907 84 FGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVGAG 163 (260)
Q Consensus 84 F~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~illG 163 (260)
||||++|++|++||+.++|+.+. +.+.|+++|++++..+.+.+.|+++.|..+ .+ ...+..+++.++++|
T Consensus 190 F~APlaGvlFalE~l~~~~~~~~--~~~~~~~~as~~a~~v~~~~~G~~~~f~~~------~~--~~~~~~~l~~~illG 259 (465)
T 1ots_A 190 FNAPLAGILFIIEEMRPQFRYTL--ISIKAVFIGVIMSTIMYRIFNHEVALIDVG------KL--SDAPLNTLWLYLILG 259 (465)
T ss_dssp HTCHHHHHHHHTTTTSCSSSCCC--CCHHHHHHHHHHHHHHHHHHSCSCCSSCCC------CC--CCCCGGGHHHHHHHH
T ss_pred HCCchHHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHHcCCCceeecC------CC--CCCCHHHHHHHHHHH
Confidence 99999999999999998775543 447788888888888888888887766443 22 134567889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccc
Q psy15907 164 VFGGLTGALYNSLNHKLTVFRIRYMS-ARYVKVLEAVLVAMVSACVPIIMIYSIDDCRPLGEDPTEH 229 (260)
Q Consensus 164 i~~Gl~g~lF~~~~~~~~~~~~~~~~-~~~~~~~~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~~~ 229 (260)
+++|++|.+|++.+.+.+++++|+.. ++|++++++.+.+++++++++ ..|+..+.|++.++.
T Consensus 260 i~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~----~~P~~lG~G~~~i~~ 322 (465)
T 1ots_A 260 IIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGF----VAPATSGGGFNLIPI 322 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH----HCGGGSSCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHH----HhHhhcCChHHHHHH
Confidence 99999999999999999998887653 345556777888888888774 358888989887543
No 2
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=100.00 E-value=6.3e-36 Score=283.87 Aligned_cols=199 Identities=22% Similarity=0.321 Sum_probs=159.1
Q ss_pred ccc-hhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhH-HHHHhhhHHHHH
Q psy15907 4 LVR-IKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKR-DFVSGGAAAGVA 81 (260)
Q Consensus 4 ~l~-~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r-~ll~aGaaAGla 81 (260)
.++ +|+++.|++++++++++|+|+|||||+||+||++|+.++|+ |+. +++|+| ++++||+|||+|
T Consensus 106 ~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~~-----------~~~--~~~~~r~~ll~aGaaAG~a 172 (446)
T 4ene_A 106 PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDI-----------FRL--KGDEARHTLLATGAAAGLA 172 (446)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHH-----------TTC--CSHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHHH-----------cCC--CHHHHHHHHHHHHHHHHHH
Confidence 344 89999999999999999999999999999999999999984 332 566776 999999999999
Q ss_pred HHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHHH
Q psy15907 82 AAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVG 161 (260)
Q Consensus 82 aaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~il 161 (260)
|+||||++|++|++||+.++++.+ ++.+.|+++|++++..+.+.+.|+++.|+.+ .+ ..++..+++.+++
T Consensus 173 aaF~aPlaGvlFalE~l~~~~~~~--~~~~~~~~~as~~a~~v~~~~~g~~~~~~~~------~~--~~~~~~~l~~~il 242 (446)
T 4ene_A 173 AAFNAPLAGILFIIEEMRPQFRYT--LISIKAVFIGVIMSTIMYRIFNHEVALIDVG------KL--SDAPLNTLWLYLI 242 (446)
T ss_dssp HHHTCHHHHHHHHHHTTSCSSSCC--CCCHHHHHHHHHHHHHHHHHTTTTCCSCCCC------CC--CCCCGGGHHHHHH
T ss_pred HHhCCcchHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHHHHHHHHcCCCceeecC------CC--CccCHHHHHHHHH
Confidence 999999999999999998766432 2457788888888888888888887766543 22 2345678889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHhhccCCCCCCCCcccc
Q psy15907 162 AGVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVL-EAVLVAMVSACVPIIMIYSIDDCRPLGEDPTEH 229 (260)
Q Consensus 162 lGi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~-~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~~~ 229 (260)
+|++||++|.+|++.+.+.+++++|++.+++.|++ ...++++++++++ +..|++.+.|++.+++
T Consensus 243 lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~l~----~~~p~~~G~G~~~i~~ 307 (446)
T 4ene_A 243 LGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLG----FVAPATSGGGFNLIPI 307 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH----HHCGGGSSCCSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH----HHhHhhcCCcHHHHHH
Confidence 99999999999999999999988887665655543 3334444444444 3468999999886644
No 3
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=100.00 E-value=5.7e-36 Score=285.46 Aligned_cols=197 Identities=21% Similarity=0.296 Sum_probs=161.3
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHHH
Q psy15907 4 LVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAAA 83 (260)
Q Consensus 4 ~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaaa 83 (260)
..++|+++.|++++++++++|+|+|||||++|+||++|+.++|+ |+ .+++|||++++||+|||+||+
T Consensus 118 ~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~l~~~-----------~~--~~~~~~r~ll~aGaAAGlaAa 184 (466)
T 3nd0_A 118 LVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGW-----------FK--ATQENQRILIAVGAGAGLATA 184 (466)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHHHHHH-----------TT--CCHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHH-----------cC--CChhHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999984 33 267889999999999999999
Q ss_pred hccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccccCCcChHHHHHHHHHH
Q psy15907 84 FGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVGAG 163 (260)
Q Consensus 84 F~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~l~~~illG 163 (260)
||||++|++|++||+.++|+.+ ++.+.|+++|++++..+.+.+.|+++.|..+ .+ ..++..+++.++++|
T Consensus 185 F~APlaGvlFalE~l~~~~~~~--~~~~~~~~~as~~a~~v~~~~~g~~~~f~~~------~~--~~~~~~~l~~~illG 254 (466)
T 3nd0_A 185 FNAPLAGVALIGEEMHPRFRSQ--TLAYHSLLFGCVMATIILRMIRGQSAIISLT------EF--KRVPLDSLWMFIILG 254 (466)
T ss_dssp HTCHHHHHHHHHSSSCCCCSSC--CTTHHHHHHHHHHHHHHHHHHTCSSCSSCCT------TC--CCCCGGGHHHHHHHH
T ss_pred hCCchHHHHHHHHhhhccccHH--HHHHHHHHHHHHHHHHHHHHHcCCCCceecC------CC--CCCCHHHHHHHHHHH
Confidence 9999999999999998776433 3457788888888888888888887766543 22 245678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccc
Q psy15907 164 VFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSACVPIIMIYSIDDCRPLGEDPTEH 229 (260)
Q Consensus 164 i~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~~i~~~~~~~~~~~~~~~~~~~~~ 229 (260)
++||++|.+|++.+.+.+++++|++.+ .+++++.+.++++++++ +..|++.+.|++.++.
T Consensus 255 i~~Gl~g~lf~~~~~~~~~~~~~~~~~--~~~~~~~l~g~~~g~l~----~~~p~~~G~G~~~i~~ 314 (466)
T 3nd0_A 255 ILFGVMGYTFNRGLFKVLDWFDRLPPL--ATKWKGFLLGSIIGILS----LFPLPLTDGGDNAVLW 314 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHHHHHHHHHHHHT----TSSSSCSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc--cHHHHHHHHHHHHHHHH----HHHHHHcCCcHHHHHH
Confidence 999999999999999999888876422 24455566666666655 3579999988876543
No 4
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=100.00 E-value=2.2e-33 Score=276.73 Aligned_cols=186 Identities=25% Similarity=0.425 Sum_probs=137.2
Q ss_pred CCccchhHHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhc-ccCchhhHHHHHhhhHHHH
Q psy15907 2 PRLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKY-FREDHEKRDFVSGGAAAGV 80 (260)
Q Consensus 2 p~~l~~~~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~-~~~~~~~r~ll~aGaaAGl 80 (260)
++.+++|+++.|++++++++++|+|+|||||+||+||++|+.+++. ++|+. +++++|||++++||+|||+
T Consensus 97 ~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~---------~~f~~~~~~~~~~r~ll~aGaaAG~ 167 (632)
T 3org_A 97 RSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRL---------GVFKELCTDRALRLQTLAAACAVGL 167 (632)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTS---------HHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhh---------hhhccccCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999988761 12331 2367889999999999999
Q ss_pred HHHhccchhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccccccccccccc-cCCcChHHHHHH
Q psy15907 81 AAAFGAPVGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYYGHPGELTNSGLLNFGKFY-DLRYDLLEMFFY 159 (260)
Q Consensus 81 aaaF~APlgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~g~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~ 159 (260)
||+|||||||++|++||++++|+.+..|++++++++|+++.+.+ .+... +. .++.. .+. +.+++..++ ++
T Consensus 168 aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~----~~~~~-~~--~~~~~-~~~~~~~~~~~~l-~~ 238 (632)
T 3org_A 168 ASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELL----YTTPL-VE--AFEGT-NFDASDVSRTQTL-LY 238 (632)
T ss_dssp HHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC--------------------------CCCCSCTH-HH
T ss_pred HHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh----ccCcc-cc--ccccc-cccccCCCcHHHH-HH
Confidence 99999999999999999999998888898888888887765533 22211 10 01100 111 235677788 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy15907 160 VGAGVFGGLTGALYNSLNHKLTVFRIRYMSARYVKVLEAVLVAMVSA 206 (260)
Q Consensus 160 illGi~~Gl~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~it~ 206 (260)
+++|++||++|++|++++++..+++.+.. .+..|++++.+++++++
T Consensus 239 ~~lGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 284 (632)
T 3org_A 239 AILGALMGVLGALFIRCVRSIYELRMRHY-PGTNRYFLVGVVALFAS 284 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSS-TTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHH
Confidence 99999999999999999998876632211 12234455555555444
No 5
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=98.53 E-value=3.6e-07 Score=86.35 Aligned_cols=105 Identities=21% Similarity=0.358 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHHHhccch
Q psy15907 9 TLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAAAFGAPV 88 (260)
Q Consensus 9 ~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaaaF~APl 88 (260)
.++.|++.+.+|+++|.+.|.-.|+.-+||++|..+++... .+++. ...+...+..+|+||-++++-|+|+
T Consensus 321 ~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~-------~~~p~--~~~~~~~~a~vGmaa~~a~~~~aPl 391 (446)
T 4ene_A 321 IFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAV-------ELFPQ--YHLEAGTFAIAGMGALLAASIRAPL 391 (446)
T ss_dssp HHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHH-------HHCGG--GTCCHHHHHHHHHTHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHH-------HhCCc--cccCHHHHHHHHHHHHHHHHHccHH
Confidence 46789999999999999999999999999999998886310 01111 1234567889999999999999999
Q ss_pred hhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15907 89 GGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYY 129 (260)
Q Consensus 89 gG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~ 129 (260)
++++..+|.+.. +..++|.++++++++.+.+.+.
T Consensus 392 t~~vl~~Eltg~-------~~~~lpl~ia~~ia~~v~~~~~ 425 (446)
T 4ene_A 392 TGIILVLEMTDN-------YQLILPMIITGLGATLLAQFTG 425 (446)
T ss_dssp HHHHHHHHHHCC-------GGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC-------hhHHHHHHHHHHHHHHHHHHhC
Confidence 999999999863 2347899999999998876544
No 6
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=98.52 E-value=3.7e-07 Score=86.66 Aligned_cols=105 Identities=21% Similarity=0.358 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHHHhccch
Q psy15907 9 TLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAAAFGAPV 88 (260)
Q Consensus 9 ~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaaaF~APl 88 (260)
.++.|++.+.+++++|.+.|.-.|+.-+||++|..+++... .+++. ...+...+..+|+||-++++-|+|+
T Consensus 336 ~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~-------~~~p~--~~~~~~~~alvGmaa~~a~v~raPl 406 (465)
T 1ots_A 336 IFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAV-------ELFPQ--YHLEAGTFAIAGMGALLAASIRAPL 406 (465)
T ss_dssp HHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHH-------HHCGG--GTCCHHHHHHHHHTHHHHHTSCCHH
T ss_pred HHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHH-------HHCCc--ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999886310 01111 1234567899999999999999999
Q ss_pred hhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15907 89 GGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAYY 129 (260)
Q Consensus 89 gG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~~ 129 (260)
++++..+|.+.. +..++|.++++++++.+.+.+.
T Consensus 407 t~ivlv~Eltg~-------~~~llpl~ia~~iA~~v~~~~~ 440 (465)
T 1ots_A 407 TGIILVLEMTDN-------YQLILPMIITGLGATLLAQFTG 440 (465)
T ss_dssp HHHHHHHHHHCC-------GGGHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999853 1247788899999988876443
No 7
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=98.50 E-value=3.3e-07 Score=87.10 Aligned_cols=104 Identities=22% Similarity=0.301 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhcccCchhhHHHHHhhhHHHHHHHhccch
Q psy15907 9 TLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKYFREDHEKRDFVSGGAAAGVAAAFGAPV 88 (260)
Q Consensus 9 ~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~~~~~~~~r~ll~aGaaAGlaaaF~APl 88 (260)
.++.|++.+.+|+++|.+.|.-.|+.-+||++|..+++... .+++. ...+...+..+|+||-++++-|+|+
T Consensus 328 ~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~-------~~~p~--~~~~~~~~a~vGmaa~~a~v~~aPl 398 (466)
T 3nd0_A 328 VFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFH-------LLFPS--QIPEPAVMAIAGMGALVAATVRAPL 398 (466)
T ss_dssp HHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHH-------HHCTT--TCSSTHHHHHHTTSHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHH-------HhCCc--cccCHHHHHHHHHHHHHHHHHhhHH
Confidence 56789999999999999999999999999999999886310 01110 1344567889999999999999999
Q ss_pred hhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy15907 89 GGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAY 128 (260)
Q Consensus 89 gG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~ 128 (260)
++++..+|.+..+ ..++|.++++++++.+.+.+
T Consensus 399 t~ivlv~Eltg~~-------~~~lpl~ia~~iA~~v~~~~ 431 (466)
T 3nd0_A 399 TAILLTIEMTDNY-------FVILPLLVTCLVASVVAEAL 431 (466)
T ss_dssp HHHHHHHHTTCCC-------TTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCh-------HHHHHHHHHHHHHHHHHHHh
Confidence 9999999998631 24778999999999887543
No 8
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=97.99 E-value=1.2e-05 Score=79.06 Aligned_cols=101 Identities=19% Similarity=0.119 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHhhhccCCCCCcchhhhhc-ccCchhhHHHHHhhhHHHHHHHhccc
Q psy15907 9 TLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKY-FREDHEKRDFVSGGAAAGVAAAFGAP 87 (260)
Q Consensus 9 ~l~~K~i~~~lti~sG~s~GrEGP~v~iGa~ig~~l~~~~~~~~~~~~~~f~~-~~~~~~~r~ll~aGaaAGlaaaF~AP 87 (260)
.++.|++.++++.++|.+.|.-.|+.-+||++|..++.. +.. +....+...+...|+||=+|++-+||
T Consensus 324 ~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~~g~~-----------~~~~~p~~~~p~~~a~vGmaa~~~~v~~ap 392 (632)
T 3org_A 324 MPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGEL-----------MRVVFGNAIVPGSYAVVGAAAFTAGVTRAL 392 (632)
T ss_dssp HHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHHHHHH-----------HHHHHCTTSCHHHHHHHHHHHHHHHHSCCT
T ss_pred HHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHH-----------HHHhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999863 111 11112345788999999999999999
Q ss_pred hhhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy15907 88 VGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLSAY 128 (260)
Q Consensus 88 lgG~lFalE~~~~~~~~~~~~~~~~~~~ias~~~~~v~~~~ 128 (260)
+.++ +.+|.+..+ . .++|.++++++++.+.+.+
T Consensus 393 ~t~v-i~~E~tg~~---~----~~lpl~ia~~~a~~v~~~~ 425 (632)
T 3org_A 393 SCAV-IIFEVTGQI---R----HLVPVLISVLLAVIVGNAF 425 (632)
T ss_dssp THHH-HHHHHTCCC---S----CSHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHhCCh---h----HHHHHHHHHHHHHHHHHHh
Confidence 9986 799998632 2 3567777777777776654
No 9
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=33.58 E-value=24 Score=20.74 Aligned_cols=24 Identities=42% Similarity=0.588 Sum_probs=15.7
Q ss_pred hhHHHHHhhhHHHHHHHhccchhh
Q psy15907 67 EKRDFVSGGAAAGVAAAFGAPVGG 90 (260)
Q Consensus 67 ~~r~ll~aGaaAGlaaaF~APlgG 90 (260)
.||+++-..++++-+++.+.++.+
T Consensus 4 sRR~FLK~~aaa~Aaaaag~~~~~ 27 (35)
T 2pq4_B 4 SRRSFMKANAVAAAAAAAGLSVPG 27 (35)
T ss_dssp CSHHHHHHHHHHHHHHHHCCCCSS
T ss_pred cHHHHHHHHHHHHHHHHhcccchh
Confidence 478888666666666666766553
No 10
>2kjf_A Carnocyclin-A; circular bacteriocin, antimicrobial peptide, solution helical, saposin-fold, antibiotic, antimicrobial, bacteriocin; NMR {Carnobacterium maltaromaticum}
Probab=33.04 E-value=55 Score=20.75 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCcCcchHHHHHHHHHHH
Q psy15907 14 TIGVITTVVGGLAGGKEGPMIHSGAIVAA 42 (260)
Q Consensus 14 ~i~~~lti~sG~s~GrEGP~v~iGa~ig~ 42 (260)
.+++++++.+|..+|..|-+...-+.++.
T Consensus 23 tvgsiisilggvtvglsgvftavkaaiak 51 (60)
T 2kjf_A 23 TVGSIISILGGVTVGLSGVFTAVKAAIAK 51 (60)
T ss_dssp CHHHHHHHHCSSCTTTHHHHHHHHHHHHH
T ss_pred hhhHHHHhhcCceechhhHHHHHHHHHHH
Confidence 36789999999999999999988888873
No 11
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=22.29 E-value=94 Score=19.23 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15907 159 YVGAGVFGGLTGALYNSLNHKL 180 (260)
Q Consensus 159 ~illGi~~Gl~g~lF~~~~~~~ 180 (260)
.+..|++.|+++....-+..++
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~ 32 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAV 32 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeehHHHHHHHHHHHHHHH
Confidence 4677788888776665544443
Done!