RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15907
         (260 letters)



>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
           [TaxId: 562]}
          Length = 444

 Score = 62.9 bits (152), Expect = 5e-12
 Identities = 39/203 (19%), Positives = 74/203 (36%), Gaps = 24/203 (11%)

Query: 2   PRLVRIKTLVVKTIGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSFGTDFQIFKY 61
             +   + L VK  G + T+ GG+  G+EGP +  G  +   +                 
Sbjct: 104 RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD------------IFR 151

Query: 62  FREDHEKRDFVSGGAAAGVAAAFGAPVGGVLFSLEE-GASFWNQSLTWRIFFGTIVTTFT 120
            + D  +   ++ GAAAG+AAAF AP+ G+LF +EE    F    ++ +  F  ++ +  
Sbjct: 152 LKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTI 211

Query: 121 LNVVLSAYYGHPGELTNSGLLNFGKFYDLRYDLLEMFFYVGAGVFGGLTGALYNSLNHKL 180
           +  + +                          L  ++ Y+  G+  G+ G ++N     +
Sbjct: 212 MYRIFNHEVAL-----------IDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGM 260

Query: 181 TVFRIRYMSARYVKVLEAVLVAM 203
                R       K +       
Sbjct: 261 QDLLHRVHGGNITKWVLMGGAIG 283


>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 27.4 bits (59), Expect = 2.1
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 69  RDFVSGGAAAGVAAAFGAP--VGGVLFSLEEGASFWNQSLTWRIFFGTIVTTFTLNVVLS 126
           +DF++GG AA ++    AP     +L  ++  +   +    ++     +V        LS
Sbjct: 8   KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLS 67

Query: 127 AYYGHPGELTNSGLLNFGKFY 147
            + G+   +          F 
Sbjct: 68  FWRGNLANVIRYFPTQALNFA 88


>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase
           molybdoprotein {Hydrogenophaga pseudoflava [TaxId:
           47421]}
          Length = 657

 Score = 26.5 bits (57), Expect = 3.6
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 15  IGVITTVVGGLAGGKEGPMIHSGAIVAAGISQGKSTSF 52
           + +++  +GG  G K G        + A I  G+   +
Sbjct: 111 VRIVSPDIGGGFGNKVGIYPGYVCAIVASIVLGRPVKW 148


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.425 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 981,939
Number of extensions: 45327
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 7
Length of query: 260
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,268,006
Effective search space: 224437062
Effective search space used: 224437062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)