BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15908
         (354 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
           Genomics Research Consortium (Nesg) Target Er13
 pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
           Genomics Research Consortium (Nesg) Target Er13
 pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
           Genomics Research Consortium (Nesg) Target Er13
          Length = 256

 Score = 28.5 bits (62), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 202 SKFESLDYDLMENYLTQSETWKSYNFILYKDFARWV 237
             F+ L YD++E  L   E W  Y    +    RW+
Sbjct: 172 GAFDDLGYDVVEXVLADQEGWDRYEAAKWLTXRRWL 207


>pdb|2UUQ|A Chain A, Crystal Structure Of Cyp130 From Mycobacterium
           Tuberculosis In The Ligand-Free Form
 pdb|2UVN|A Chain A, Crystal Structure Of Econazole-Bound Cyp130 From
           Mycobacterium Tuberculosis
 pdb|2UVN|B Chain B, Crystal Structure Of Econazole-Bound Cyp130 From
           Mycobacterium Tuberculosis
          Length = 414

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 9   ITSNEAESSGEDDRPPLMQQDSETSILPRQSRSR----RRKCSVLPTVDTVIETTIKK-- 62
           +   E E  G  D PP++ QD       R+  SR    R+  +V PTV   +   ++K  
Sbjct: 80  VNYGELEMIGLHDTPPMVMQDPPVHTEFRKLVSRGFTPRQVETVEPTVRKFVVERLEKLR 139

Query: 63  --GASNIISSKFESLDYDLMENYL 84
             G  +I++  F+ L   ++ +YL
Sbjct: 140 ANGGGDIVTELFKPLPSMVVAHYL 163


>pdb|2WGY|A Chain A, Crystal Structure Of The G243a Mutant Of Cyp130 From M.
           Tuberculosis
          Length = 413

 Score = 28.5 bits (62), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 9   ITSNEAESSGEDDRPPLMQQDSETSILPRQSRSR----RRKCSVLPTVDTVIETTIKK-- 62
           +   E E  G  D PP++ QD       R+  SR    R+  +V PTV   +   ++K  
Sbjct: 79  VNYGELEMIGLHDTPPMVMQDPPVHTEFRKLVSRGFTPRQVETVEPTVRKFVVERLEKLR 138

Query: 63  --GASNIISSKFESLDYDLMENYL 84
             G  +I++  F+ L   ++ +YL
Sbjct: 139 ANGGGDIVTELFKPLPSMVVAHYL 162


>pdb|2WH8|A Chain A, Interaction Of Mycobacterium Tuberculosis Cyp130 With
           Heterocyclic Arylamines
 pdb|2WH8|B Chain B, Interaction Of Mycobacterium Tuberculosis Cyp130 With
           Heterocyclic Arylamines
 pdb|2WH8|C Chain C, Interaction Of Mycobacterium Tuberculosis Cyp130 With
           Heterocyclic Arylamines
 pdb|2WH8|D Chain D, Interaction Of Mycobacterium Tuberculosis Cyp130 With
           Heterocyclic Arylamines
 pdb|2WHF|A Chain A, Interaction Of Mycobacterium Tuberculosis Cyp130 With
           Heterocyclic Arylamines
          Length = 413

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 9   ITSNEAESSGEDDRPPLMQQDSETSILPRQSRSR----RRKCSVLPTVDTVIETTIKK-- 62
           +   E E  G  D PP++ QD       R+  SR    R+  +V PTV   +   ++K  
Sbjct: 79  VNYGELEMIGLHDTPPMVMQDPPVHTEFRKLVSRGFTPRQVETVEPTVRKFVVERLEKLR 138

Query: 63  --GASNIISSKFESLDYDLMENYL 84
             G  +I++  F+ L   ++ +YL
Sbjct: 139 ANGGGDIVTELFKPLPSMVVAHYL 162


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,353,019
Number of Sequences: 62578
Number of extensions: 348843
Number of successful extensions: 687
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 7
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)