Query psy15908
Match_columns 354
No_of_seqs 195 out of 1111
Neff 4.3
Searched_HMMs 46136
Date Sat Aug 17 00:39:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474|consensus 100.0 1.7E-35 3.8E-40 305.0 11.4 152 202-353 53-207 (762)
2 cd03685 ClC_6_like ClC-6-like 99.9 4.3E-23 9.2E-28 209.2 17.0 146 205-353 1-147 (466)
3 KOG0476|consensus 99.9 5E-22 1.1E-26 208.8 13.6 128 222-353 82-209 (931)
4 KOG0475|consensus 99.8 4.5E-22 9.8E-27 206.2 5.9 161 189-353 4-199 (696)
5 cd03683 ClC_1_like ClC-1-like 99.8 2.2E-18 4.8E-23 172.9 12.7 113 236-353 2-114 (426)
6 cd01036 ClC_euk Chloride chann 99.7 2.9E-17 6.3E-22 164.3 11.3 106 243-353 1-106 (416)
7 cd03684 ClC_3_like ClC-3-like 99.7 2E-16 4.4E-21 159.8 11.5 97 243-353 1-97 (445)
8 PRK05277 chloride channel prot 99.5 4.6E-13 1E-17 134.6 14.1 110 237-353 2-111 (438)
9 cd01031 EriC ClC chloride chan 99.3 1.8E-11 3.9E-16 121.7 11.6 104 242-353 1-104 (402)
10 cd01034 EriC_like ClC chloride 99.1 2.3E-10 4.9E-15 113.7 10.9 95 247-353 1-98 (390)
11 COG0038 EriC Chloride channel 98.9 8.8E-09 1.9E-13 104.8 12.4 116 228-353 15-131 (443)
12 cd00400 Voltage_gated_ClC CLC 98.8 2.1E-08 4.5E-13 98.9 10.5 103 243-353 1-103 (383)
13 PRK01862 putative voltage-gate 98.7 9.6E-08 2.1E-12 99.3 12.2 112 235-353 24-136 (574)
14 PRK01610 putative voltage-gate 98.7 9.9E-08 2.2E-12 96.4 11.6 114 233-353 2-118 (418)
15 cd01033 ClC_like Putative ClC 98.6 1.4E-07 3.1E-12 94.1 8.9 102 243-353 1-103 (388)
16 PF00654 Voltage_CLC: Voltage 98.6 7.5E-08 1.6E-12 94.6 5.6 58 294-353 2-59 (355)
17 cd03682 ClC_sycA_like ClC sycA 98.4 3.3E-06 7.3E-11 83.9 11.7 95 239-353 2-96 (378)
18 PRK03655 putative ion channel 98.3 3.9E-06 8.4E-11 85.1 11.0 112 230-353 7-118 (414)
19 cd01034 EriC_like ClC chloride 97.8 0.00031 6.7E-09 70.2 13.0 108 232-353 198-305 (390)
20 PRK05277 chloride channel prot 97.7 0.00021 4.6E-09 72.4 10.6 106 234-353 215-320 (438)
21 cd00400 Voltage_gated_ClC CLC 97.5 0.00045 9.7E-09 68.4 8.8 104 232-353 202-305 (383)
22 cd01033 ClC_like Putative ClC 97.4 0.0008 1.7E-08 67.5 9.2 102 233-353 202-303 (388)
23 PRK01862 putative voltage-gate 97.2 0.0014 3E-08 68.6 9.0 103 234-354 237-339 (574)
24 PRK01610 putative voltage-gate 96.6 0.012 2.5E-07 60.0 9.6 103 233-353 218-320 (418)
25 cd01031 EriC ClC chloride chan 96.3 0.026 5.6E-07 56.6 9.7 104 233-353 204-307 (402)
26 PF00654 Voltage_CLC: Voltage 96.1 0.069 1.5E-06 52.8 11.7 110 230-353 158-271 (355)
27 cd03682 ClC_sycA_like ClC sycA 96.1 0.086 1.9E-06 52.7 12.5 100 233-353 197-298 (378)
28 cd03684 ClC_3_like ClC-3-like 95.4 0.18 3.8E-06 51.9 11.7 105 234-353 205-329 (445)
29 PRK03655 putative ion channel 95.3 0.18 3.9E-06 51.6 11.3 104 233-353 220-323 (414)
30 COG0038 EriC Chloride channel 94.6 0.38 8.2E-06 49.6 11.6 104 233-354 232-335 (443)
31 cd03685 ClC_6_like ClC-6-like 91.0 1.5 3.3E-05 45.4 10.0 34 232-265 273-306 (466)
32 cd01036 ClC_euk Chloride chann 89.8 2.9 6.4E-05 42.6 10.6 34 233-266 233-266 (416)
33 cd03683 ClC_1_like ClC-1-like 87.9 4 8.6E-05 41.8 10.1 33 233-265 229-261 (426)
34 KOG0475|consensus 50.1 47 0.001 36.7 6.9 105 234-353 307-424 (696)
35 PF11309 DUF3112: Protein of u 48.9 1.2E+02 0.0026 27.6 8.5 99 233-350 8-111 (160)
36 COG4781 Membrane domain of mem 48.2 1.9E+02 0.004 29.7 10.3 78 222-305 208-286 (340)
37 COG4721 ABC-type cobalt transp 47.9 84 0.0018 29.6 7.3 29 228-256 111-139 (192)
38 PF13829 DUF4191: Domain of un 45.5 65 0.0014 31.2 6.5 52 230-303 20-71 (224)
39 PF13273 DUF4064: Protein of u 43.6 1.8E+02 0.0038 23.6 8.3 22 283-304 60-81 (100)
40 PRK05415 hypothetical protein; 40.4 1.4E+02 0.0031 30.5 8.4 24 231-254 64-87 (341)
41 COG2981 CysZ Uncharacterized p 38.1 90 0.0019 30.7 6.2 56 238-301 32-87 (250)
42 PRK11677 hypothetical protein; 38.0 34 0.00074 30.5 3.1 20 233-252 3-22 (134)
43 TIGR01654 bact_immun_7tm bacte 36.8 4.2E+02 0.0091 29.0 11.8 79 74-153 51-132 (679)
44 PF10754 DUF2569: Protein of u 36.5 2.9E+02 0.0063 24.3 8.8 28 231-258 5-32 (149)
45 PRK01030 tetrahydromethanopter 36.1 1E+02 0.0022 30.6 6.3 54 299-353 50-112 (264)
46 PF04211 MtrC: Tetrahydrometha 34.7 1.3E+02 0.0027 29.9 6.7 53 300-353 58-119 (262)
47 PRK02983 lysS lysyl-tRNA synth 34.7 5E+02 0.011 30.6 12.5 25 282-306 144-168 (1094)
48 PRK01844 hypothetical protein; 34.5 45 0.00098 27.0 3.0 20 234-253 4-23 (72)
49 PRK15065 PTS system mannose-sp 34.3 4.2E+02 0.009 26.2 10.2 35 239-273 95-129 (262)
50 TIGR00822 EII-Sor PTS system, 33.2 4.3E+02 0.0093 26.1 10.1 24 240-263 96-119 (265)
51 KOG0474|consensus 32.1 27 0.00059 38.6 1.8 34 233-266 334-367 (762)
52 PRK10408 putative L-valine exp 30.9 46 0.001 29.0 2.7 65 239-322 5-69 (111)
53 PRK09757 PTS system N-acetylga 30.3 4.9E+02 0.011 25.6 10.1 34 240-273 97-130 (267)
54 COG4061 MtrC Tetrahydromethano 29.4 1.1E+02 0.0023 30.0 5.1 54 299-353 56-118 (262)
55 PF13782 SpoVAB: Stage V sporu 29.3 3.8E+02 0.0083 23.3 8.2 22 283-304 87-108 (110)
56 PF14851 FAM176: FAM176 family 28.8 92 0.002 28.4 4.4 31 227-257 13-43 (153)
57 PRK00523 hypothetical protein; 28.7 69 0.0015 26.0 3.2 20 234-253 5-24 (72)
58 PF06738 DUF1212: Protein of u 26.9 4.6E+02 0.0099 23.4 9.9 22 232-253 100-121 (193)
59 PRK12768 CysZ-like protein; Re 26.8 4.9E+02 0.011 25.2 9.2 14 236-249 27-40 (240)
60 COG4652 Uncharacterized protei 26.7 8.5E+02 0.018 27.4 11.9 29 320-348 273-301 (657)
61 PRK13027 C4-dicarboxylate tran 26.5 4.9E+02 0.011 27.0 9.8 16 234-249 10-25 (421)
62 PF03904 DUF334: Domain of unk 26.1 4E+02 0.0087 26.1 8.4 16 281-296 197-212 (230)
63 COG4512 AgrB Membrane protein 26.1 4.6E+02 0.01 25.0 8.5 33 227-259 34-66 (198)
64 TIGR02212 lolCE lipoprotein re 25.6 6.4E+02 0.014 24.7 10.5 20 238-257 319-338 (411)
65 PF07857 DUF1632: CEO family ( 25.3 98 0.0021 30.3 4.2 19 335-353 178-196 (254)
66 TIGR01148 mtrC N5-methyltetrah 24.6 3.1E+02 0.0067 27.3 7.4 52 300-353 58-118 (265)
67 PF09307 MHC2-interact: CLIP, 24.2 26 0.00055 30.6 0.0 31 106-137 2-32 (114)
68 TIGR00930 2a30 K-Cl cotranspor 23.8 2E+02 0.0043 33.2 6.8 28 323-350 221-248 (953)
69 PF09788 Tmemb_55A: Transmembr 23.8 3.3E+02 0.0071 27.0 7.4 27 230-256 192-218 (256)
70 PRK13735 conjugal transfer mat 22.7 3.5E+02 0.0075 31.5 8.4 36 283-322 363-398 (942)
71 PRK14230 camphor resistance pr 22.6 4.6E+02 0.01 22.6 7.4 24 281-304 90-113 (119)
72 PF01102 Glycophorin_A: Glycop 22.3 1.3E+02 0.0028 26.5 4.0 16 237-252 66-81 (122)
73 PRK14213 camphor resistance pr 22.2 3.6E+02 0.0079 23.1 6.7 25 281-305 92-116 (118)
74 PRK14208 camphor resistance pr 21.5 3.8E+02 0.0083 23.3 6.8 24 281-304 96-119 (126)
75 PF00375 SDF: Sodium:dicarboxy 20.9 2.3E+02 0.0049 28.6 6.0 16 234-249 3-18 (390)
76 PRK14225 camphor resistance pr 20.8 4.5E+02 0.0098 23.2 7.1 23 281-303 107-129 (137)
77 PRK01636 ccrB camphor resistan 20.6 4.1E+02 0.0088 22.9 6.7 23 281-303 80-102 (118)
78 TIGR02865 spore_II_E stage II 20.3 1.8E+02 0.0039 32.5 5.5 29 235-263 114-142 (764)
79 PF10337 DUF2422: Protein of u 20.3 8.5E+02 0.018 25.1 10.1 31 321-353 177-207 (459)
80 PRK14196 chromosome condensati 20.1 4.3E+02 0.0093 22.9 6.8 24 281-304 96-119 (127)
No 1
>KOG0474|consensus
Probab=100.00 E-value=1.7e-35 Score=304.99 Aligned_cols=152 Identities=37% Similarity=0.637 Sum_probs=144.6
Q ss_pred CCccccccccccchhhhhHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CC
Q psy15908 202 SKFESLDYDLMENYLTQSET-WKSYNFILYKDFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSG--NT 278 (354)
Q Consensus 202 ~dfESLDY~~~en~lyr~~~-~r~~~~~~~~~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~--~~ 278 (354)
.+||||||+.+||++|++++ ++.++..+++...+|+++++||++|||+|+++|++++.+..+|+.+++..+.+|. .+
T Consensus 53 ~~yESLDYei~ENdlf~e~~r~~~k~~~~~y~~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g 132 (762)
T KOG0474|consen 53 CDYESLDYEICENDLFLEDWRTRDKKKGRRYEAVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQKG 132 (762)
T ss_pred CCccccchhhhcchHHHHHHHhhcccceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhccc
Confidence 57999999999999999988 5777889999999999999999999999999999999999999999988877663 46
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 279 GMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 279 ~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
+++.+++.|+++|++|+++|+.+|.++||.|+|||||||||||||+++|+.+++|||++|++|++++|++||.+|
T Consensus 133 ~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~G 207 (762)
T KOG0474|consen 133 CLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVG 207 (762)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhcc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.90 E-value=4.3e-23 Score=209.21 Aligned_cols=146 Identities=40% Similarity=0.711 Sum_probs=132.3
Q ss_pred cccccccccchhhhhHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhH
Q psy15908 205 ESLDYDLMENYLTQSET-WKSYNFILYKDFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVP 283 (354)
Q Consensus 205 ESLDY~~~en~lyr~~~-~r~~~~~~~~~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~ 283 (354)
||+||+..+|++|+.++ +|.++......+.+|++++++|+++|+++++++.+++++.++|.+.+.+...+ ...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~ 77 (466)
T cd03685 1 ESLDYEVIENDLFREEWRKRKKKQVLQYEFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEK---GRLFTA 77 (466)
T ss_pred CCCCccccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cchHHH
Confidence 89999999999999866 56666777889999999999999999999999999999999999887554422 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 284 LAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 284 flvwvl~sviLalIAAlLV~~~AP~AaGSGIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
|++|+++++++++++++++++++|.++||||||||+++||...++++++|++++|+++.++++++|+++|
T Consensus 78 ~~~~~~~~~~~~li~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~G 147 (466)
T cd03685 78 FLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALG 147 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCC
Confidence 8889999999999999999999999999999999999999999999999999999999999999999998
No 3
>KOG0476|consensus
Probab=99.87 E-value=5e-22 Score=208.84 Aligned_cols=128 Identities=26% Similarity=0.389 Sum_probs=116.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy15908 222 WKSYNFILYKDFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLL 301 (354)
Q Consensus 222 ~r~~~~~~~~~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlL 301 (354)
.|.....++.-...|++++++|++++++++++|++++.+.+.+.+++ +.+.. ...++.|+.|+.++++|++++|.+
T Consensus 82 ~r~~q~i~r~l~eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly-~~~~~---~~~yl~yl~Wv~y~v~Li~fSA~f 157 (931)
T KOG0476|consen 82 TRQMQNIVRKLGEDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLY-RELGS---SHSYLAYLSWVGYPVGLVLFSAGF 157 (931)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcc---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778889999999999999999999999999999999886444 43432 345689999999999999999999
Q ss_pred hhhcccccCCCChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 302 VVYVEPVALGSGIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 302 V~~~AP~AaGSGIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
|.+++|.|.||||||||.+|.|+...+||++|||++|++|+.+++||||.+|
T Consensus 158 ~h~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiG 209 (931)
T KOG0476|consen 158 CHYIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIG 209 (931)
T ss_pred HheeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcC
Confidence 9999999999999999999999999999999999999999999999999998
No 4
>KOG0475|consensus
Probab=99.85 E-value=4.5e-22 Score=206.21 Aligned_cols=161 Identities=20% Similarity=0.230 Sum_probs=132.3
Q ss_pred ccccCCCCccccCCCccccccccccchhh-hhHh-hhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15908 189 LAFAFPGASNIISSKFESLDYDLMENYLT-QSET-WKSYN----FILYKDFARWVIFFLIGVLTACIGIFIDISIEFIAV 262 (354)
Q Consensus 189 l~~~~p~~~~~~~~dfESLDY~~~en~ly-r~~~-~r~~~----~~~~~~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~ 262 (354)
+++++|+.+++ +++.++||.++.+... ++++ .+.++ ...+..+..|.-+++||+.+|..+.++|+..+| |
T Consensus 4 ~~~~ip~~~~~--~df~tiDw~~e~~~dr~r~r~~~~~~k~~~w~~~~si~~~~sg~~~IGl~ag~la~~~di~~~w--D 79 (696)
T KOG0475|consen 4 LDEPIPGVGTY--DDFHTIDWIRELRRDRVRHRLISKKRKESVWELLKSIIDAGSGVLLIGLAAGFLAGLADILTSW--D 79 (696)
T ss_pred ccCCCCCcccc--cchhhhHHHHHHhcchhhhhhhcccccchHHHHHHHHhccchhhhHhHhHHHHhhHHHHhhcch--h
Confidence 46789999997 9999999999876522 2222 12221 233444455555799999999999999999999 9
Q ss_pred HHHHHHHHH--hh--hcC-------------------------CCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q psy15908 263 FKYSTLKRY--LD--NSG-------------------------NTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSG 313 (354)
Q Consensus 263 lK~~l~~~~--l~--~c~-------------------------~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSG 313 (354)
+|.+.|... ++ .|+ ++.+.+.|++|+++++.|+++|+.+|+.+||+|+|||
T Consensus 80 ~k~G~C~~~~~~n~~~CC~t~~~~~~c~~~~~w~~~~~~~~~w~~~~~~~~l~y~~~al~fa~la~~lv~~~AP~A~gSG 159 (696)
T KOG0475|consen 80 LKEGYCTPNFWLNHEFCCSTFTEDDVCKEWFFWCEHLGLDFSWTGHYIVSYLIYVLWALLFAFLAVSLVKVVAPYACGSG 159 (696)
T ss_pred hccCcccchhhhhhhhheeeeecCccchhhhhhHHHhccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhheehhhhcCC
Confidence 999988752 32 222 1234569999999999999999999999999999999
Q ss_pred hhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 314 IPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 314 IPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
|||+|+++.|+.+..|++.+|++.|.++++++|+|||++|
T Consensus 160 IpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlG 199 (696)
T KOG0475|consen 160 IPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLG 199 (696)
T ss_pred CccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccC
Confidence 9999999999999999999999999999999999999998
No 5
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.77 E-value=2.2e-18 Score=172.90 Aligned_cols=113 Identities=29% Similarity=0.513 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChh
Q psy15908 236 WVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIP 315 (354)
Q Consensus 236 Wlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIP 315 (354)
|++++++|+++|+++++++++++++.++|..++.. .+ .+++..|+.|+++++++++++++++++++|.|+|||||
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp 76 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSL-LT----GNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIP 76 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc----cchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHH
Confidence 89999999999999999999999999998866543 22 35667889999999999999999999999999999999
Q ss_pred hHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 316 QVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 316 EVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
|||++++|.+.++++++|++++|+++.++++++|+++|
T Consensus 77 ~v~~~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svG 114 (426)
T cd03683 77 EMKTILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLG 114 (426)
T ss_pred HHHHHHcCCCccccccHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999998
No 6
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.71 E-value=2.9e-17 Score=164.30 Aligned_cols=106 Identities=30% Similarity=0.475 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChhhHHHHHc
Q psy15908 243 GVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVKCYLN 322 (354)
Q Consensus 243 GIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIPEVKayLN 322 (354)
|+++|+++.+++++++++.++|.+++... . .+++..|++|+++++++++++++++++++|.|+||||||||+++|
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~ 75 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRI-P----GSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLN 75 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHc-c----cchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHc
Confidence 78899999999999999999999888653 1 355678889999999999999999999999999999999999999
Q ss_pred CCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 323 GIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 323 Gv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
|.+.|+++++|++++|+++.++++++|+++|
T Consensus 76 g~~~~~~l~~~~~~~K~i~~~l~igsG~svG 106 (416)
T cd01036 76 GVHLPMYLSIRTLIAKTISCICAVASGLPLG 106 (416)
T ss_pred CCcccccccHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999998
No 7
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.67 E-value=2e-16 Score=159.78 Aligned_cols=97 Identities=25% Similarity=0.352 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChhhHHHHHc
Q psy15908 243 GVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVKCYLN 322 (354)
Q Consensus 243 GIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIPEVKayLN 322 (354)
|+++|++++++|+.++|+.++|.+.+ +|++|+++++++++++++++++++|.|+||||||||++++
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~ 66 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC--------------NYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILS 66 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHc
Confidence 78999999999999999999887544 5778899999999999999999999999999999999999
Q ss_pred CCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 323 GIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 323 Gv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
|...++++++|++++|+++.++++++|+++|
T Consensus 67 g~~~~~~~~~~~~~~k~l~~~l~i~~G~s~G 97 (445)
T cd03684 67 GFIIRGFLGKWTLLIKSVGLVLAVASGLSLG 97 (445)
T ss_pred CccccccccHHHHHHHHHhhHHhhccCCcCC
Confidence 9988999999999999999999999999998
No 8
>PRK05277 chloride channel protein; Provisional
Probab=99.48 E-value=4.6e-13 Score=134.61 Aligned_cols=110 Identities=23% Similarity=0.303 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChhh
Q psy15908 237 VIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQ 316 (354)
Q Consensus 237 lll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIPE 316 (354)
++++++|+++|+++.+++.+++++.+++.+.+.. .. ...+..|+++++++.++++++++++++++|.+.||||||
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~ 76 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLAS-VA----DNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPE 76 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc----ccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHH
Confidence 4678999999999999999999999998876543 11 123445666677888888899999999999999999999
Q ss_pred HHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 317 VKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 317 VKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
|+++++|...+.+ +++++.|+++.++++++|+++|
T Consensus 77 i~~~l~~~~~~~~--~~~~~~k~~~~~l~~gsG~s~G 111 (438)
T PRK05277 77 IEGALEGLRPVRW--WRVLPVKFFGGLGTLGSGMVLG 111 (438)
T ss_pred HHHHHcCCCccch--HHHHHHHHHHHHHHHhcCCCCC
Confidence 9999998765554 7899999999999999999998
No 9
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.29 E-value=1.8e-11 Score=121.68 Aligned_cols=104 Identities=24% Similarity=0.192 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChhhHHHHH
Q psy15908 242 IGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVKCYL 321 (354)
Q Consensus 242 IGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIPEVKayL 321 (354)
+|+++|+++.+++..++++.+++++...... .....|..++++++++++++++++++++|.+.|+|||||+.++
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l 74 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAA------NNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVL 74 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcc------cccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHH
Confidence 5899999999999999999999887654321 1233456677788888889999999999999999999999999
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 322 NGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 322 NGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
+|... .+.+++++.|+++.++++++|+++|
T Consensus 75 ~~~~~--~~~~~~~~~k~~~~~l~~gsG~s~G 104 (402)
T cd01031 75 AGLLP--PNWWRVLPVKFVGGVLALGSGLSLG 104 (402)
T ss_pred cCCCC--cccHHHHHHHHHHHHHHHhcCCCCC
Confidence 98754 3568999999999999999999998
No 10
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.14 E-value=2.3e-10 Score=113.73 Aligned_cols=95 Identities=19% Similarity=0.078 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChhhHHHHHcC---
Q psy15908 247 ACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVKCYLNG--- 323 (354)
Q Consensus 247 GLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIPEVKayLNG--- 323 (354)
|+++++++.+++++.+++.++... + +|+.+++.+++.+ +.++++.+++|.++||||||||+++++
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~p~~~~-~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~ 68 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTAT--------H---PWLPLLLTPAGFA-LIAWLTRRFFPGAAGSGIPQVIAALELPSA 68 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHh--------c---hHHHHHHHHHHHH-HHHHHHHhhCCCCCCCCHHHHHHHHccccc
Confidence 577889999999999887744421 1 3434556666555 455666678999999999999999995
Q ss_pred CCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 324 IKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 324 v~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
..+++++.+|+++.|+++.++++++|+|+|
T Consensus 69 ~~~~~~~~~r~~~~k~i~~~l~i~~G~s~G 98 (390)
T cd01034 69 AARRRLLSLRTAVGKILLTLLGLLGGASVG 98 (390)
T ss_pred ccccccccHHHHHHHHHHHHHHHHcCCCcC
Confidence 446788999999999999999999999998
No 11
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=98.92 E-value=8.8e-09 Score=104.80 Aligned_cols=116 Identities=20% Similarity=0.104 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCch-hHHHHHHHHHHHHHHHHHHHhhhcc
Q psy15908 228 ILYKDFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGML-VPLAVWLGFNIVPVLIGSLLVVYVE 306 (354)
Q Consensus 228 ~~~~~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~-~~flvwvl~sviLalIAAlLV~~~A 306 (354)
........+.+..++|+++|+....++....++...+.+.+. .+ ... ..|+.++.....+...+ +++..++
T Consensus 15 ~~~~~~~~i~~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~l~~~~~gl~~g~-~~~~~~~ 86 (443)
T COG0038 15 LLIALAVLIGIAAALGVIVGLFAVALDLALLLLGRLRGGLLS--AA-----QAPGPWLLPLVPALGGLLVGA-LLVYKFA 86 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--cc-----ccchhHHHHHHHHHHHHHHHH-HHHHHhC
Confidence 344556667777888888888888888888777766554332 11 111 12222223333333333 8889999
Q ss_pred cccCCCChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 307 PVALGSGIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 307 P~AaGSGIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
|.++||||||++..++|. .+.+.+|+.++|+++.++++++|+++|
T Consensus 87 p~~~g~Gi~~~i~a~~~~--~~~~~~~~~~vk~~~~~l~i~sG~s~G 131 (443)
T COG0038 87 PEARGSGIPQAIEALHGR--KGRISPRVLPVKLVATLLTIGSGASLG 131 (443)
T ss_pred ccccCCChhHHHHHHhcC--CCcccHHHHHHHHHHHHHHHhcCcccc
Confidence 999999999999999987 444669999999999999999999998
No 12
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=98.82 E-value=2.1e-08 Score=98.92 Aligned_cols=103 Identities=21% Similarity=0.176 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChhhHHHHHc
Q psy15908 243 GVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVKCYLN 322 (354)
Q Consensus 243 GIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIPEVKayLN 322 (354)
|+++|+++.+++.+++++.+++++....... ....++..+.+.+++.++++++++++..| +.|+|+||++..++
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~v~l~~~~~~~-~~g~G~~~v~~~~~ 74 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELA-----AGSLSPLYILLVPVIGGLLVGLLVRLLGP-ARGHGIPEVIEAIA 74 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccc-----cccccHHHHHHHHHHHHHHHHHHHHHhCc-ccCCChHHHHHHHH
Confidence 6889999999999999999887654322110 01124445667777777788788877666 99999999999998
Q ss_pred CCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 323 GIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 323 Gv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
+... .+.+++++.|+++.++++++|+++|
T Consensus 75 ~~~~--~~~~~~~~~k~l~~~l~~~~G~s~G 103 (383)
T cd00400 75 LGGG--RLPLRVALVKFLASALTLGSGGSVG 103 (383)
T ss_pred hCCC--CCCHHHHHHHHHHHHHHHHcCCCCC
Confidence 6433 4568999999999999999999998
No 13
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.72 E-value=9.6e-08 Score=99.29 Aligned_cols=112 Identities=10% Similarity=0.048 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccC-CCC
Q psy15908 235 RWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVAL-GSG 313 (354)
Q Consensus 235 rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~Aa-GSG 313 (354)
..+.++++|+++|+++.+++.+++++.+++++........ ....+|+..++++++.+++++++..+..|.+. |+|
T Consensus 24 ~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~ 99 (574)
T PRK01862 24 MLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEM----AKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGK 99 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHH----hhcccHHHHHHHHHHHHHHHHHHHHHhccccccCCc
Confidence 3456799999999999999999999999977532111110 00113333345556666777777666666666 667
Q ss_pred hhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 314 IPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 314 IPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
+|+++++.++... +.+++.+.|+++.++++++|+|+|
T Consensus 100 ~~~~~~~~~~~~~---~~~~~~~~k~~~~~l~i~~G~s~G 136 (574)
T PRK01862 100 TDYMEAVALGDGV---VPVRQSLWRSASSLLTIGSGGSIG 136 (574)
T ss_pred HHHHHHHHcCCCC---CChHHHHHHHHHHHHHHHcCCCcC
Confidence 7777777765433 337899999999999999999998
No 14
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.71 E-value=9.9e-08 Score=96.37 Aligned_cols=114 Identities=14% Similarity=0.022 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccc--c
Q psy15908 233 FARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLK-RYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPV--A 309 (354)
Q Consensus 233 ~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~-~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~--A 309 (354)
.++|++.+++|+++|+++.+++.++++++.+-.+... ..... .....+|. .++++++.+++++++..++.|. +
T Consensus 2 ~~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~l~p~~ggll~g~~~~~~~~~~~~ 77 (418)
T PRK01610 2 FRRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNA---ATNLSPWR-RLLTPALGGLAAGLLLWGWQKFTQQ 77 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhc---ccccchHH-HHHHHHHHHHHHHHHHHHHcccccc
Confidence 3567888999999999999999999998765332110 01100 01112342 3455666677777888777764 7
Q ss_pred CCCChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 310 LGSGIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 310 aGSGIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
.|+|+||++..+++ .+.+.+|++++|+++.++++++|+|+|
T Consensus 78 ~~~g~~~vi~av~~---~g~~~~~~~~~k~~~~~l~igsG~S~G 118 (418)
T PRK01610 78 RPHAPTDYMEALQT---DGQFDYAASLVKSLASLLVVTSGSAIG 118 (418)
T ss_pred cCCCcHHHHHHHHc---CCCCCccHHHHHHHHHHHHHHcCCccc
Confidence 89999999999986 244778999999999999999999998
No 15
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.60 E-value=1.4e-07 Score=94.08 Aligned_cols=102 Identities=13% Similarity=0.054 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChhhHHHHH
Q psy15908 243 GVLTACIGIFIDISIEFIAVFKYSTLKR-YLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVKCYL 321 (354)
Q Consensus 243 GIltGLIA~lIdi~Ie~Ls~lK~~l~~~-~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIPEVKayL 321 (354)
|+++|+.+.+++.++++++++.++.... .... ......|.. ++.+++.+++++++..++ ...|||||||++++
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~-~~~~~~ggl~~~l~~~~~--~~~g~gi~~v~~~~ 74 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTG---VAAVSPIRR-ALSLTVGGLIAGLGWYLL--RRKGKKLVSIKQAV 74 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhh---hccCChHHH-HHHHHHHHHHHHHHHHHH--hccCCCcccHHHHh
Confidence 7889999999999999999998754321 1110 001112222 233444455555554432 34799999999999
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 322 NGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 322 NGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
+|.. .+.+++.+.|+++.++++++|+|+|
T Consensus 75 ~~~~---~~~~~~~~~k~~~~~l~ig~G~s~G 103 (388)
T cd01033 75 RGKK---RMPFWETIIHAVLQIVTVGLGAPLG 103 (388)
T ss_pred cCCC---CCCHHHHHHHHHHHHhhhhcCCCcC
Confidence 9864 2567888899999999999999998
No 16
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=98.56 E-value=7.5e-08 Score=94.63 Aligned_cols=58 Identities=33% Similarity=0.268 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhcccccCCCChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 294 PVLIGSLLVVYVEPVALGSGIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 294 LalIAAlLV~~~AP~AaGSGIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
+++++++++++++|.++|||||||++.+++...+ +++|+++.|+++.++++++|+++|
T Consensus 2 ~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~~~--~~~~~~~~k~~~~~~s~~~G~s~G 59 (355)
T PF00654_consen 2 GGLLSGLLWKKFAPEAAGSGIPEVKAALRGKSGR--LPFRTLPVKFVGSILSLGSGLSVG 59 (355)
T ss_dssp HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS-----HHHHHHHHHHHHHHHHHTT-S-B
T ss_pred EEEEeeHHHHHHCCccCCCCHHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHHhcCCCCc
Confidence 5678889999999999999999999999987766 889999999999999999999998
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.36 E-value=3.3e-06 Score=83.93 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChhhHH
Q psy15908 239 FFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVK 318 (354)
Q Consensus 239 l~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIPEVK 318 (354)
.+++|+++|+++.+++.+++++.++++. . +|+. +..++ .+++.+++.+++.|. .|+|+|||+
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~------------~---~~~~-~~~p~-~g~~i~~l~~~~~~~-~~~g~~~v~ 63 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA------------H---PWLL-PFLPL-AGLLIGYLYQKFGKN-SEKGNNLII 63 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH------------h---hHHH-HHHHH-HHHHHHHHHHHhCcc-cCCChHHHH
Confidence 5789999999999999999999987541 1 2222 22333 334455788887666 568999999
Q ss_pred HHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 319 CYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 319 ayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
..+++.. +.+.+|.++.|+++..+++++|.++|
T Consensus 64 ~~~~~~~--~~~~~~~~~~k~~~~~l~l~~G~s~G 96 (378)
T cd03682 64 EEIHGPE--EGIPLRMAPLVLFGTVLTHLFGGSAG 96 (378)
T ss_pred HHHHccC--CCCchHHHHHHHHHHHHHHHcCCccC
Confidence 9998643 24458999999999999999999998
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=98.32 E-value=3.9e-06 Score=85.15 Aligned_cols=112 Identities=12% Similarity=0.049 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy15908 230 YKDFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVA 309 (354)
Q Consensus 230 ~~~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~A 309 (354)
+.....++.++++|+++|+++++++.+++++.++.++......+. ....+ .|. +.++++.++++++++++ .|..
T Consensus 7 ~~~~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~-~~~~~--~~~--~~~~~~gGllvgll~~~-~~~~ 80 (414)
T PRK03655 7 RTMLLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGI-AQDSP--LWI--IGMLTLTGIAVGLVIRF-SPGH 80 (414)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-ccccc--hHH--HHHHHHHHHHHHHHHHH-cCCC
Confidence 455677789999999999999999999999998876443211110 00111 122 23455666788888765 5888
Q ss_pred CCCChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 310 LGSGIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 310 aGSGIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
.|+ +|+++....+ -++.+.+..|+++.++++++|+|+|
T Consensus 81 ~G~-~~~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~G~S~G 118 (414)
T PRK03655 81 AGP-DPATEPLIGA-----PVPPSALPGLLLALILGLAGGVSLG 118 (414)
T ss_pred CCC-hHHHHHHhcC-----CCCccHHHHHHHHHHHHHhcCCCCC
Confidence 788 7998888554 2446889999999999999999998
No 19
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=97.80 E-value=0.00031 Score=70.21 Aligned_cols=108 Identities=14% Similarity=0.089 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q psy15908 232 DFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALG 311 (354)
Q Consensus 232 ~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaG 311 (354)
.+..|+..+++|+++|+++.++...+.++.+.+..+..... ...+++.-++..++++ .+..++.|...|
T Consensus 198 ~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~gl~~~----~~~~~~~~~~~G 266 (390)
T cd01034 198 LGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRRFR-------RRRPVLFAALCGLALA----LIGLVSGGLTFG 266 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-------chhhHHHHHHHHHHHH----HHHHhCCCcccc
Confidence 34557789999999999999999988888776543321100 0011111111222222 222233457889
Q ss_pred CChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 312 SGIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 312 SGIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
+|.++++..++|... +.+..+++|++.+++++++|.+.|
T Consensus 267 ~G~~~i~~~~~~~~~---~~~~~~l~K~i~t~lt~gsG~~gG 305 (390)
T cd01034 267 TGYLQARAALEGGGG---LPLWFGLLKFLATLLSYWSGIPGG 305 (390)
T ss_pred CcHHHHHHHHhCCCc---ccHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999987542 336779999999999999999987
No 20
>PRK05277 chloride channel protein; Provisional
Probab=97.72 E-value=0.00021 Score=72.42 Aligned_cols=106 Identities=14% Similarity=0.096 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q psy15908 234 ARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSG 313 (354)
Q Consensus 234 ~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSG 313 (354)
..+...+++|+++|+++.++...+.++.++...+ . ..+...++ ....+.+++.+.+. ++.|...|+|
T Consensus 215 ~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~-----~----~~~~~~~~---~~~~i~gl~~g~l~-~~~p~~~g~G 281 (438)
T PRK05277 215 NTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRL-----H----GGNKKRWV---LMGGAVGGLCGLLG-LLAPAAVGGG 281 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c----ccccHHHH---HHHHHHHHHHHHHH-HHhhhhcCCh
Confidence 4456778999999999999999887776643221 1 01111221 12223333333443 4579999999
Q ss_pred hhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 314 IPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 314 IPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
.+++...++|..... .-+..++.|++.+.+++++|.+.|
T Consensus 282 ~~~i~~~~~~~~~~~-~l~~~~~~K~i~t~ls~gsG~~GG 320 (438)
T PRK05277 282 FNLIPIALAGNFSIG-MLLFIFVARFITTLLCFGSGAPGG 320 (438)
T ss_pred HHHHHHHHcCCchHH-HHHHHHHHHHHHHHHHHcCCCcHH
Confidence 999999999843222 224578999999999999999887
No 21
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=97.48 E-value=0.00045 Score=68.44 Aligned_cols=104 Identities=19% Similarity=0.146 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q psy15908 232 DFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALG 311 (354)
Q Consensus 232 ~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaG 311 (354)
.+..++..+++|+++|+++.++.....++.+++... . .+ +... .++.+++.+.+ .++.|...|
T Consensus 202 ~~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~~-----~----~~----~~~~---~~i~gll~~~~-~~~~p~~~g 264 (383)
T cd00400 202 SLLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRRL-----P----IP----PWLR---PALGGLLLGLL-GLFLPQVLG 264 (383)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C----Cc----HHHH---HHHHHHHHHHH-HHHHHHHHc
Confidence 355677889999999999999999988877653321 1 11 1111 22223333333 445699999
Q ss_pred CChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 312 SGIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 312 SGIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
+|.+++...++|.....+ -+..++.|++.+++++++|.+.|
T Consensus 265 ~G~~~~~~~~~~~~~~~~-l~~~~~~K~~~t~l~~~sG~~GG 305 (383)
T cd00400 265 SGYGAILLALAGELSLLL-LLLLLLLKLLATALTLGSGFPGG 305 (383)
T ss_pred CcHHHHHHHHcCChhHHH-HHHHHHHHHHHHHHHHhcCCCch
Confidence 999999998887443222 25689999999999999999887
No 22
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=97.37 E-value=0.0008 Score=67.48 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q psy15908 233 FARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGS 312 (354)
Q Consensus 233 ~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGS 312 (354)
+..+...+++|+++|+++.++...+.++.+++. . ... .+ |. . .+.+++.+. +.++.|...|+
T Consensus 202 ~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~--------~---~~~--~~--~~-~-~l~gl~~g~-~~~~~p~~~G~ 263 (388)
T cd01033 202 TPLLIWALLAGPVLGVVAAGFRRLSQAARAKRP--------K---GKR--IL--WQ-M-PLAFLVIGL-LSIFFPQILGN 263 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------c---ccc--hH--HH-H-HHHHHHHHH-HHHHHHHHhCC
Confidence 445677899999999999999998877765431 0 011 11 11 1 111222222 33457999999
Q ss_pred ChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 313 GIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 313 GIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
|-..+...+++.....++ +..++.|++.+.+++++|.+.|
T Consensus 264 G~~~i~~~~~~~~~~~~l-l~~~~~K~~~t~lt~gsG~~GG 303 (388)
T cd01033 264 GRALAQLAFSTTLTLSLL-LILLVLKIVATLLALRAGAYGG 303 (388)
T ss_pred cHHHHHHHHcCCchHHHH-HHHHHHHHHHHHHHHccCCCcc
Confidence 999999999976544444 7889999999999999999987
No 23
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.19 E-value=0.0014 Score=68.59 Aligned_cols=103 Identities=22% Similarity=0.178 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q psy15908 234 ARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSG 313 (354)
Q Consensus 234 ~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSG 313 (354)
..+.+.+++|+++|+++.++..++.+..++.. . .. .+.....++ .+++.+. +.++.|...|+|
T Consensus 237 ~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~----~-~~--------~~~~~~~~~---~gl~~g~-l~~~~p~~~g~G 299 (574)
T PRK01862 237 WEVLLFVALGVLCGAAAPQFLRLLDASKNQFK----R-LP--------VPLPVRLAL---GGLLVGV-ISVWVPEVWGNG 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-cC--------CchhHHHHH---HHHHHHH-HHHHHHHHhcCC
Confidence 44556789999999999999888777654311 1 00 011111111 1222222 233469999999
Q ss_pred hhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCccccC
Q psy15908 314 IPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGTW 354 (354)
Q Consensus 314 IPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG~ 354 (354)
-..+...++|...... -+..+++|++.+++++++|.+.|.
T Consensus 300 ~~~i~~~~~~~~~~~~-l~~~~~~K~~~t~~t~g~G~~GG~ 339 (574)
T PRK01862 300 YSVVNTILHAPWTWQA-LVAVLVAKLIATAATAGSGAVGGV 339 (574)
T ss_pred HHHHHHHHcCCchHHH-HHHHHHHHHHHHHHHHccCCCccc
Confidence 9999999987432211 245678999999999999999883
No 24
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.59 E-value=0.012 Score=59.99 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q psy15908 233 FARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGS 312 (354)
Q Consensus 233 ~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGS 312 (354)
+..+...+++|++.|+++.++..++.+..++.. + .. .. +++ . .++.+++.+.+..+ .|..-|.
T Consensus 218 ~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~----~-~~----~~---~~~-~---~~lggli~g~l~~~-~p~~~G~ 280 (418)
T PRK01610 218 ARDYALIISTGLLAGLCGPLLLTLMNASHRGFV----S-LK----LA---PPW-Q---LALGGLIVGLLSLF-TPAVWGN 280 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----c-cc----cc---hhH-H---HHHHHHHHHHHHHH-hhHHhCC
Confidence 445667899999999999999887766554321 1 00 01 121 1 12222333333333 4999999
Q ss_pred ChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 313 GIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 313 GIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
|.+.++..++|.... .+-+-.+++|++.+.+++++|.+.|
T Consensus 281 G~~~i~~~~~~~~~~-~~l~~l~l~K~~~t~lt~gsG~~GG 320 (418)
T PRK01610 281 GYSVVQSFLTAPPLL-MLIAGIFLCKLLAVLASSGSGAPGG 320 (418)
T ss_pred cHHHHHHHHcCChhH-HHHHHHHHHHHHHHHHHHhcCCCch
Confidence 999999998863211 1112346899999999999999887
No 25
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=96.26 E-value=0.026 Score=56.65 Aligned_cols=104 Identities=16% Similarity=0.100 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q psy15908 233 FARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGS 312 (354)
Q Consensus 233 ~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGS 312 (354)
+..+...+++|++.|+++.++.....++.+++..+. . .. .++..++.. ++.+.+. ++.|+.-|+
T Consensus 204 ~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~----~----~~---~~~~~~l~g----l~~~~~~-~~~p~~~g~ 267 (402)
T cd01031 204 LKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK----K----LP---RELRVLLPG----LLIGPLG-LLLPEALGG 267 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c----CC---hhHHHHHHH----HHHHHHH-HHHHHHhCC
Confidence 345567889999999999999988877776543221 0 01 111111211 1222222 236999999
Q ss_pred ChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 313 GIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 313 GIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
|=..++..++|...... -+..++.|++.+.+++++|.+.|
T Consensus 268 G~~~i~~~~~~~~~~~~-l~~~~~~K~~~t~lt~~~G~~GG 307 (402)
T cd01031 268 GHGLILSLAGGNFSISL-LLLIFVLRFIFTMLSYGSGAPGG 307 (402)
T ss_pred HHHHHHHHHcCCchHHH-HHHHHHHHHHHHHHHHhcCCchH
Confidence 98888888876432222 14567899999999999998876
No 26
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=96.11 E-value=0.069 Score=52.83 Aligned_cols=110 Identities=19% Similarity=0.285 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccc-
Q psy15908 230 YKDFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPV- 308 (354)
Q Consensus 230 ~~~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~- 308 (354)
...+..+...+++|++.|+++.++.....++.++..... + .. ...++ ..++.+++.+.+ .++.|.
T Consensus 158 ~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~-~~-------~~~~l----~~~i~gl~~g~l-~~~~p~~ 223 (355)
T PF00654_consen 158 PFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-R-LK-------IPPIL----RPVIGGLVIGLL-AFFFPEG 223 (355)
T ss_dssp ---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TC-------HHHHH----HHHHHHHHHHHH-HHSSGG-
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-cc-------cchHH----HHHHHHHHHHHH-HHHHhhh
Confidence 345556778899999999999999999888887544331 1 00 01121 222233333333 345688
Q ss_pred -cCCCChhhHHHHHcCCC--CCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 309 -ALGSGIPQVKCYLNGIK--MPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 309 -AaGSGIPEVKayLNGv~--ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
.-|+|=.++...+++.. ..-..-+-.++.|++.+.+++++|.+-|
T Consensus 224 ~~~g~G~~~i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG 271 (355)
T PF00654_consen 224 SVLGSGYELIQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAPGG 271 (355)
T ss_dssp SGSSSSTTHHHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-BSB
T ss_pred cccCCcHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCCCC
Confidence 99999999999998741 1222224568999999999999999877
No 27
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=96.10 E-value=0.086 Score=52.74 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhc-ccccCC
Q psy15908 233 FARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYV-EPVALG 311 (354)
Q Consensus 233 ~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~-AP~AaG 311 (354)
+..+...+++|++.|+++.++...+.++.++..... . . .|+ . +++.+++.+.+...+ .|...|
T Consensus 197 ~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~~----~-----~---~~~-~---~~iggl~~g~~~~~~~~~~~~G 260 (378)
T cd03682 197 PLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKRI----K-----N---PYL-R---PFVGGLLIILLVYLLGSRRYLG 260 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----C-----C---cHH-H---HHHHHHHHHHHHHHhcCCcccc
Confidence 344567889999999999999998888776543211 1 1 121 1 122222222332221 355679
Q ss_pred CChhhHHH-HHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 312 SGIPQVKC-YLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 312 SGIPEVKa-yLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
.|..++.. ..++ .. .+..++.|++.+.+++++|.+.|
T Consensus 261 ~g~~~i~~~~~~~-~~----~~~~~l~K~~~t~~s~g~G~~GG 298 (378)
T cd03682 261 LGTPLIEDSFFGG-TV----YPYDWLLKLIFTVITLGAGFKGG 298 (378)
T ss_pred CCHHHHHHHHhcC-Cc----hHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999987 4443 22 35668999999999999999877
No 28
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=95.39 E-value=0.18 Score=51.86 Aligned_cols=105 Identities=14% Similarity=0.089 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q psy15908 234 ARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSG 313 (354)
Q Consensus 234 ~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSG 313 (354)
..+...+++|++.|+++.++.....++.+++..... . ...++..+ +.+++.+.+ .++.|+..|+|
T Consensus 205 ~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~---~--------~~~~~~~~---l~~l~~~~l-~~~~p~~~~~g 269 (445)
T cd03684 205 FELIPFILLGIFGGLYGAFFIKANIKWARFRKKSLL---K--------RYPVLEVL---LVALITALI-SFPNPYTRLDM 269 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c--------hhHHHHHH---HHHHHHHHH-HhChHHHccch
Confidence 445678999999999999999998888776542210 0 01111121 222223233 34579999999
Q ss_pred hhhHHHHHcCCCC----------------Ccc----chhhHHHHHHHHHHHHhhcCcccc
Q psy15908 314 IPQVKCYLNGIKM----------------PRL----VRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 314 IPEVKayLNGv~i----------------p~~----LslRTLvvKiVGlILAVgSGLSLG 353 (354)
=..++..+++... ..+ .-+-.+++|++.+.+++++|.+-|
T Consensus 270 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG 329 (445)
T cd03684 270 TELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAG 329 (445)
T ss_pred hhHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 8888777764211 001 112357999999999999999877
No 29
>PRK03655 putative ion channel protein; Provisional
Probab=95.28 E-value=0.18 Score=51.61 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q psy15908 233 FARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGS 312 (354)
Q Consensus 233 ~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGS 312 (354)
...|...+++|++.|+++.++......+.++. .. .. . ++....+.. ++.+.+...+-|..-|+
T Consensus 220 ~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~----~~-~~-----~---p~~~~~lgG----l~vg~l~l~~~~~~~g~ 282 (414)
T PRK03655 220 MTDILSGAIVAAIAIAAGMVAVWCLPRLHALM----HR-LK-----N---PVLVLGIGG----FILGILGVIGGPLTLFK 282 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-cc-----c---chHHHHHHH----HHHHHHHHHhCCccccC
Confidence 34556677888888999988876554433321 11 11 1 221112222 33333333345888999
Q ss_pred ChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 313 GIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 313 GIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
|=.+++..+.+....-++-+-.+++|++.+.++++||.+-|
T Consensus 283 Gy~~i~~~~~~~~~~~~~ll~l~l~K~lat~ls~~sG~~GG 323 (414)
T PRK03655 283 GLDEMQQMAANQAFSASDYFLLAVVKLAALVVAAASGFRGG 323 (414)
T ss_pred CHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHccCCCCc
Confidence 99999999887333322112357899999999999998876
No 30
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=94.62 E-value=0.38 Score=49.61 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q psy15908 233 FARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGS 312 (354)
Q Consensus 233 ~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGS 312 (354)
.......+++|++.|+++.++-.+.....++ ..+ ...+..+..++. .++. .++..+.|..-|.
T Consensus 232 ~~~~~~~~~lGii~G~~g~~~~~~~~~~~~~--------~~~-----~~~~~~~~~~~~---g~l~-g~~~l~~P~~lg~ 294 (443)
T COG0038 232 LWDLLLYLVLGIIAGLFGVLLSRLLALSRRF--------FRR-----LPLPPLLRPALG---GLLV-GALGLLFPEVLGN 294 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------Hhc-----CcchHHHHHHHH---HHHH-HHHHHhchhhhCC
Confidence 3444567899999999996665554333111 111 112222222222 2222 2333457999999
Q ss_pred ChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCccccC
Q psy15908 313 GIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGTW 354 (354)
Q Consensus 313 GIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG~ 354 (354)
|--.+...+++...... -+-.+++|++.+.++++||.+-|.
T Consensus 295 G~~~~~~~~~~~~~~~~-l~~l~~~K~l~t~~s~gSG~~GGi 335 (443)
T COG0038 295 GYGLIQLALAGEGGLLV-LLLLFLLKLLATLLSYGSGAPGGI 335 (443)
T ss_pred CccHHHHHHccCccHHH-HHHHHHHHHHHHHHHHhcCCCcce
Confidence 99999999987554431 367899999999999999998773
No 31
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=91.02 E-value=1.5 Score=45.37 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15908 232 DFARWVIFFLIGVLTACIGIFIDISIEFIAVFKY 265 (354)
Q Consensus 232 ~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~ 265 (354)
.+..+...+++|++.|+++.++.....++.+++.
T Consensus 273 ~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~ 306 (466)
T cd03685 273 TYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRK 306 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677899999999999999999888877654
No 32
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=89.83 E-value=2.9 Score=42.57 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15908 233 FARWVIFFLIGVLTACIGIFIDISIEFIAVFKYS 266 (354)
Q Consensus 233 ~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~ 266 (354)
+..+...+++|++.|+++.++.....++.+++..
T Consensus 233 ~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~ 266 (416)
T cd01036 233 LYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRR 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999999999888876653
No 33
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=87.90 E-value=4 Score=41.80 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15908 233 FARWVIFFLIGVLTACIGIFIDISIEFIAVFKY 265 (354)
Q Consensus 233 ~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~ 265 (354)
...+...+++|++.|+++.++.....++.+++.
T Consensus 229 ~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~ 261 (426)
T cd03683 229 VQELPIFALLGIICGLLGALFVFLHRKIVRFRR 261 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999888887654
No 34
>KOG0475|consensus
Probab=50.13 E-value=47 Score=36.74 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q psy15908 234 ARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSG 313 (354)
Q Consensus 234 ~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSG 313 (354)
.-.+..+++|++.|+++.++-.+--.+.++|.... + +.+.+.+ ++++.+...++.++.|..+=++
T Consensus 307 ~EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~~---l-----g~~pv~e-------v~~vt~iTaiIs~~np~~r~~~ 371 (696)
T KOG0475|consen 307 FELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSSK---L-----GKFPVLE-------VVFVTLVTAIISLFNPETRFNM 371 (696)
T ss_pred ccchHHHHHHHhhhHHHHHHHHHHHHHHhccchhh---c-----cCCcchh-------HHHHHHHHHHHHhcCHHHHhhH
Confidence 34566789999999999876555444444433220 1 1221111 1222222233445667666655
Q ss_pred hhhHHHHHcCC------CCC-------ccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 314 IPQVKCYLNGI------KMP-------RLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 314 IPEVKayLNGv------~ip-------~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
---|.-.+|-. .++ -++-+..++.|++.++++.|++++-|
T Consensus 372 ~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~G 424 (696)
T KOG0475|consen 372 SELITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAG 424 (696)
T ss_pred HHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccc
Confidence 44444444421 111 23346788999999999999998877
No 35
>PF11309 DUF3112: Protein of unknown function (DUF3112); InterPro: IPR021460 This eukaryotic family of proteins has no known function.
Probab=48.87 E-value=1.2e+02 Score=27.59 Aligned_cols=99 Identities=15% Similarity=0.042 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--hhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhh--ccc
Q psy15908 233 FARWVIFFLIGVLTACIGI-FIDISIEFIAVFKYSTLKRY--LDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVY--VEP 307 (354)
Q Consensus 233 ~~rWlll~LIGIltGLIA~-lIdi~Ie~Ls~lK~~l~~~~--l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~--~AP 307 (354)
+..+++.++.+++.++++. .+-..+..+..+-....... +.. ....-+.++.+.++.+++++.++=.. ..+
T Consensus 8 ~~~~~~~~ly~~v~~~lvm~vI~s~V~~~ytl~~~~~~~~r~v~~----~~~~~~~v~a~~pi~lv~la~~~P~~~p~~i 83 (160)
T PF11309_consen 8 LFWIFMRFLYISVVAVLVMTVITSTVPSFYTLDPHTRRIDRDVQL----FASTYLAVYAFLPIPLVALAFFLPRRKPWWI 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 3444455555555555555 44444444433322222111 110 01123455566666666666544322 122
Q ss_pred ccCCCChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCc
Q psy15908 308 VALGSGIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRT 350 (354)
Q Consensus 308 ~AaGSGIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGL 350 (354)
+.-|-| -++.+.++.=+-++++.+++|+
T Consensus 84 E~Fg~g---------------~~~~k~~il~~ts~lL~~ga~~ 111 (160)
T PF11309_consen 84 ESFGPG---------------SHRTKIIILIITSLLLTLGAIF 111 (160)
T ss_pred ccCCcc---------------chhHHHHHHHHHHHHHHHHHHH
Confidence 222333 3456666666777777777764
No 36
>COG4781 Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=48.18 E-value=1.9e+02 Score=29.75 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=45.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHH-HHHHHHHHHHHHHHHH
Q psy15908 222 WKSYNFILYKDFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPL-AVWLGFNIVPVLIGSL 300 (354)
Q Consensus 222 ~r~~~~~~~~~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~f-lvwvl~sviLalIAAl 300 (354)
++++++.....+...+....+|++.+++...+-++.+.+.+-...++-.... ...-| +.+.+.....+.+++.
T Consensus 208 k~TKk~~f~l~~~~~~I~l~~~~l~sL~~s~~~~~~~~vd~~g~aliva~~~------l~vi~~~~ff~~~~f~~~l~s~ 281 (340)
T COG4781 208 KKTKKNVFFLAWKLFLILLKIILLLSLIISGILLAQDLVDKIGEALIVAIIN------LVVIWNLYFFALTFFLVKLASF 281 (340)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666677777777777777777777766665544433211 11112 3334444556677888
Q ss_pred Hhhhc
Q psy15908 301 LVVYV 305 (354)
Q Consensus 301 LV~~~ 305 (354)
|+.-.
T Consensus 282 L~~~~ 286 (340)
T COG4781 282 LVGEA 286 (340)
T ss_pred HHhhc
Confidence 88753
No 37
>COG4721 ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]
Probab=47.94 E-value=84 Score=29.62 Aligned_cols=29 Identities=7% Similarity=0.104 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15908 228 ILYKDFARWVIFFLIGVLTACIGIFIDIS 256 (354)
Q Consensus 228 ~~~~~~~rWlll~LIGIltGLIA~lIdi~ 256 (354)
..+.+..-|..+.+.|+++++.++.+|+.
T Consensus 111 ~~kyr~~Sl~~~mlagmg~~~~sf~~eyf 139 (192)
T COG4721 111 VTKYRYYSLPVLMLAGMGITLASFVYEYF 139 (192)
T ss_pred HHHHHHhhHHHHHHHhhchhHHHHHHHHH
Confidence 44677788999999999999999998873
No 38
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=45.53 E-value=65 Score=31.16 Aligned_cols=52 Identities=17% Similarity=0.357 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q psy15908 230 YKDFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVV 303 (354)
Q Consensus 230 ~~~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~ 303 (354)
...-..|+.-+++|.+.|.++.++-+++ +. -.|.+|+.+.+.+++++++++.
T Consensus 20 trk~dp~l~~~ml~a~l~~~~v~v~ig~--l~--------------------~~~~~~~i~gi~~g~l~am~vl 71 (224)
T PF13829_consen 20 TRKEDPKLPWLMLGAFLGPIAVFVLIGL--LF--------------------GSWWYWLIIGILLGLLAAMIVL 71 (224)
T ss_pred HHHHCcchHHHHHHHHHHHHHHHHHHHH--HH--------------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666666665554321 10 1355567777777777776654
No 39
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=43.59 E-value=1.8e+02 Score=23.63 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy15908 283 PLAVWLGFNIVPVLIGSLLVVY 304 (354)
Q Consensus 283 ~flvwvl~sviLalIAAlLV~~ 304 (354)
.+.+..++..+++++++++++.
T Consensus 60 ~~~i~~ii~~il~iia~i~ikk 81 (100)
T PF13273_consen 60 ILGIIAIISSILGIIASILIKK 81 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 3444456667778888888776
No 40
>PRK05415 hypothetical protein; Provisional
Probab=40.36 E-value=1.4e+02 Score=30.46 Aligned_cols=24 Identities=8% Similarity=-0.094 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15908 231 KDFARWVIFFLIGVLTACIGIFID 254 (354)
Q Consensus 231 ~~~~rWlll~LIGIltGLIA~lId 254 (354)
..|.+|+...+.++++..++...+
T Consensus 64 ~~w~~~~~~~l~~l~~~~~~~~~~ 87 (341)
T PRK05415 64 SLWRKLLWGGLGLLGSLVVGQAVQ 87 (341)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677666666665555554443
No 41
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=38.10 E-value=90 Score=30.73 Aligned_cols=56 Identities=9% Similarity=0.139 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy15908 238 IFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLL 301 (354)
Q Consensus 238 ll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlL 301 (354)
+.+.+.+..|+...++..+..|+..+.-+ -++|--|.+|+.|.+..+.+.++.+++
T Consensus 32 Ll~ni~L~~gl~~~~~~~~~~wid~Lm~~--------iPdWl~wLs~v~~~la~L~lll~~~~l 87 (250)
T COG2981 32 LLLNILLWGGLFWLLFSQALPWIDTLMPG--------IPDWLGWLSYLLWILAVLLLLLVFAFL 87 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888877765431 223333455555554444444333333
No 42
>PRK11677 hypothetical protein; Provisional
Probab=37.98 E-value=34 Score=30.50 Aligned_cols=20 Identities=10% Similarity=0.359 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15908 233 FARWVIFFLIGVLTACIGIF 252 (354)
Q Consensus 233 ~~rWlll~LIGIltGLIA~l 252 (354)
|..|+++++||+++|.++.-
T Consensus 3 W~~a~i~livG~iiG~~~~R 22 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56677778888887777654
No 43
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=36.80 E-value=4.2e+02 Score=29.04 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=43.9
Q ss_pred cccHHHHHHHHhhhhhhhhhhhcccccccccCCC--CCCCccccCCccccccccchhhhhccCCCCchhhhhhh-hhcCC
Q psy15908 74 SLDYDLMENYLTQSMTESHKYLITSNETESSGED--DRPPLMQQDSETSILPRQSRSRRRKCSVLPTVDTVIET-TIKKG 150 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 150 (354)
.-.++-...|+.|.-.+.+-+...++..-+..+. +.|...+.-+.. =+|..-.+..++-..-++.+++|.+ -|++|
T Consensus 51 ~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 129 (679)
T TIGR01654 51 EASENNIKSYLESFAKKDNVLIAKSSGVPSKDNKTKDHFTFNKLYGNK-TIPNKFQSYPTYSKEKPEQLKKEQFYFIKNG 129 (679)
T ss_pred hhhhhHHHHHHhhhcccccceEEEEeecccccCCcCCccchhhhcccc-cCCCcCCcceeeccccccchhHHHhhhhhcC
Confidence 3455667788888888877776655544333333 366654421111 2223333333444455677777766 67777
Q ss_pred cee
Q psy15908 151 KVT 153 (354)
Q Consensus 151 ~~~ 153 (354)
+++
T Consensus 130 ~l~ 132 (679)
T TIGR01654 130 RLS 132 (679)
T ss_pred Ccc
Confidence 765
No 44
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=36.50 E-value=2.9e+02 Score=24.30 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15908 231 KDFARWVIFFLIGVLTACIGIFIDISIE 258 (354)
Q Consensus 231 ~~~~rWlll~LIGIltGLIA~lIdi~Ie 258 (354)
.....|+++.++|++.+++.....+..+
T Consensus 5 ~~IGGWL~lp~iglils~l~~~~~l~~~ 32 (149)
T PF10754_consen 5 QGIGGWLILPAIGLILSPLSTSLMLYLY 32 (149)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999998888776544
No 45
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=36.05 E-value=1e+02 Score=30.57 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=39.4
Q ss_pred HHHhhhcccccCCCChhhH---------HHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 299 SLLVVYVEPVALGSGIPQV---------KCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 299 AlLV~~~AP~AaGSGIPEV---------KayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
+--+|+++-+.=|-|+|-+ -+.|-|..++..+.. .+..-+++++++..=|+.+|
T Consensus 50 a~tvRrva~YGLGTGVPSIGmlalGmG~iaal~G~~i~~~~~~-~~~~PI~~liia~iiG~vvG 112 (264)
T PRK01030 50 ANTVRRVASYGLGTGVPSIGMLALGMGTIAALAGVAIGDALGI-VLAGPIVALIIAAIIGAVVG 112 (264)
T ss_pred hHHHHHHHhccCCCCCCcHHHHHHhHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHHHHHH
Confidence 3457888888999999975 345557777766655 67777888888877777666
No 46
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=34.73 E-value=1.3e+02 Score=29.93 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=38.9
Q ss_pred HHhhhcccccCCCChhhH---------HHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 300 LLVVYVEPVALGSGIPQV---------KCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 300 lLV~~~AP~AaGSGIPEV---------KayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
--+++++-+-=|-|+|-+ -+.+-|..++.. ....++.=+++++++..=|+.+|
T Consensus 58 dtvRrvasYGLGTGVPSIGm~alGmG~ia~l~G~~i~~~-~~~~l~~PI~~~iiA~IiG~vvG 119 (262)
T PF04211_consen 58 DTVRRVASYGLGTGVPSIGMMALGMGIIAALAGLAIGGI-GIPNLAGPIIALIIAAIIGAVVG 119 (262)
T ss_pred HHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHhhhcc-ccchHHHHHHHHHHHHHHHHHHH
Confidence 456778888889999875 344557777766 56678888888888877776665
No 47
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=34.69 E-value=5e+02 Score=30.55 Aligned_cols=25 Identities=8% Similarity=-0.207 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcc
Q psy15908 282 VPLAVWLGFNIVPVLIGSLLVVYVE 306 (354)
Q Consensus 282 ~~flvwvl~sviLalIAAlLV~~~A 306 (354)
...+.|++..++.+++++|+..++.
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~l~~~~ 168 (1094)
T PRK02983 144 RKALAVLVGGLAVGILVGWGLVELF 168 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheee
Confidence 3344455555555455556655443
No 48
>PRK01844 hypothetical protein; Provisional
Probab=34.47 E-value=45 Score=27.04 Aligned_cols=20 Identities=5% Similarity=-0.008 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15908 234 ARWVIFFLIGVLTACIGIFI 253 (354)
Q Consensus 234 ~rWlll~LIGIltGLIA~lI 253 (354)
..|+++.++++++|+++.++
T Consensus 4 ~~~I~l~I~~li~G~~~Gff 23 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFF 23 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888877665
No 49
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=34.34 E-value=4.2e+02 Score=26.15 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15908 239 FFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLD 273 (354)
Q Consensus 239 l~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~ 273 (354)
++.+++-+|+++..++.....+..+-.+...++.+
T Consensus 95 AvalAvPvglLg~~l~~~~~~~n~~~~h~adk~ae 129 (262)
T PRK15065 95 GIAIAIPLAAAGQVLTIIVRTITVAFQHAADKAAE 129 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777766655555444444444443
No 50
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=33.20 E-value=4.3e+02 Score=26.09 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15908 240 FLIGVLTACIGIFIDISIEFIAVF 263 (354)
Q Consensus 240 ~LIGIltGLIA~lIdi~Ie~Ls~l 263 (354)
+.+++-+|+++..++.....+..+
T Consensus 96 ialAvPva~Lg~~l~~~~~~~~s~ 119 (265)
T TIGR00822 96 IALALPLAAAGQVLTIFVRTITVL 119 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665555444443
No 51
>KOG0474|consensus
Probab=32.06 E-value=27 Score=38.65 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15908 233 FARWVIFFLIGVLTACIGIFIDISIEFIAVFKYS 266 (354)
Q Consensus 233 ~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~ 266 (354)
.......+++|++.|+++.+++.+--++..+|+.
T Consensus 334 ~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~ 367 (762)
T KOG0474|consen 334 IHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN 367 (762)
T ss_pred cccccceeEeehhhhhHHHHHHHHHHHHHHHHHh
Confidence 3344566789999999999999886676666664
No 52
>PRK10408 putative L-valine exporter; Provisional
Probab=30.86 E-value=46 Score=28.99 Aligned_cols=65 Identities=22% Similarity=0.107 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChhhHH
Q psy15908 239 FFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVK 318 (354)
Q Consensus 239 l~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIPEVK 318 (354)
.+++|+++|++-+++++.=- |.+.-.+ . ...--+....++=+++.+.|++++|. |++|+|+
T Consensus 5 illigliVG~~NflfRyLPl-----rl~~~~~----~--~~~~rG~~~i~LdsIGIAsIcaLLVV--------S~~P~v~ 65 (111)
T PRK10408 5 VLLIGLLVGTANYLFRYLPL-----RLRVGRA----R--PTLKRGKVGILLDSIGIASICALLVV--------STAPEVM 65 (111)
T ss_pred eeeHHHHHhhHHHHHHhcch-----hhccccc----C--cccccchHHHHHhhccHHHHHHHHHH--------hcChHHH
Confidence 46799999999999887532 2211110 0 11111344456677888889999986 5678887
Q ss_pred HHHc
Q psy15908 319 CYLN 322 (354)
Q Consensus 319 ayLN 322 (354)
.--+
T Consensus 66 ~~~~ 69 (111)
T PRK10408 66 HDPR 69 (111)
T ss_pred hChH
Confidence 6544
No 53
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=30.32 E-value=4.9e+02 Score=25.61 Aligned_cols=34 Identities=3% Similarity=-0.027 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15908 240 FLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLD 273 (354)
Q Consensus 240 ~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~ 273 (354)
+.+++-+|+++..++.....+..+-.....++.+
T Consensus 97 ialAvPvgllg~~l~~~~~~~~~~~~~~adk~ae 130 (267)
T PRK09757 97 IGLGLPFSLLMQYVILFFYSAFSLFMTKADKCAK 130 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666655554444433333333333
No 54
>COG4061 MtrC Tetrahydromethanopterin S-methyltransferase, subunit C [Coenzyme metabolism]
Probab=29.37 E-value=1.1e+02 Score=30.01 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=41.4
Q ss_pred HHHhhhcccccCCCChhhH---------HHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 299 SLLVVYVEPVALGSGIPQV---------KCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 299 AlLV~~~AP~AaGSGIPEV---------KayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
+=-|++++-+.=|.|+|-| -+.+.|..+| ++++.-+.+-++|++.+..-|..+|
T Consensus 56 AdaVRrVAsYGLGTGVPSIG~mslgmG~vaav~gla~~-~ftlp~laapIi~~I~aaviG~vvg 118 (262)
T COG4061 56 ADAVRRVASYGLGTGVPSIGMMSLGMGIVAAVAGLAIP-YFTLPALAAPIIGLIVAAVIGAVVG 118 (262)
T ss_pred hHHHHHHHhhccCCCCCCcceeeecchHHHHHHHhhcc-cccchHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999975 3455677777 7889999999999888876665544
No 55
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=29.34 E-value=3.8e+02 Score=23.31 Aligned_cols=22 Identities=14% Similarity=-0.037 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy15908 283 PLAVWLGFNIVPVLIGSLLVVY 304 (354)
Q Consensus 283 ~flvwvl~sviLalIAAlLV~~ 304 (354)
..+.|++++++++=+.+.+..+
T Consensus 87 ~~i~~li~aialGK~~GsL~~~ 108 (110)
T PF13782_consen 87 RGIPYLIMAIALGKVIGSLFYW 108 (110)
T ss_pred hchHHHHHHHHHHHHHHHhhhe
Confidence 4566778888888666555543
No 56
>PF14851 FAM176: FAM176 family
Probab=28.79 E-value=92 Score=28.45 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15908 227 FILYKDFARWVIFFLIGVLTACIGIFIDISI 257 (354)
Q Consensus 227 ~~~~~~~~rWlll~LIGIltGLIA~lIdi~I 257 (354)
.+.+..-.+..+.|+.|||+||+-.+.-+++
T Consensus 13 a~I~~~PE~~aLYFv~gVC~GLlLtLcllV~ 43 (153)
T PF14851_consen 13 AHIRDNPERFALYFVSGVCAGLLLTLCLLVI 43 (153)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677788889999999998876665543
No 57
>PRK00523 hypothetical protein; Provisional
Probab=28.68 E-value=69 Score=25.99 Aligned_cols=20 Identities=5% Similarity=-0.184 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15908 234 ARWVIFFLIGVLTACIGIFI 253 (354)
Q Consensus 234 ~rWlll~LIGIltGLIA~lI 253 (354)
..|++++++++++|+++.+|
T Consensus 5 ~l~I~l~i~~li~G~~~Gff 24 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYF 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888877665
No 58
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=26.88 E-value=4.6e+02 Score=23.39 Aligned_cols=22 Identities=14% Similarity=0.655 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15908 232 DFARWVIFFLIGVLTACIGIFI 253 (354)
Q Consensus 232 ~~~rWlll~LIGIltGLIA~lI 253 (354)
....|+..+..|+..+.++.++
T Consensus 100 ~y~~~~~~l~~~l~~~~fa~lf 121 (193)
T PF06738_consen 100 RYPPWLVILAAGLASAAFALLF 121 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777776653
No 59
>PRK12768 CysZ-like protein; Reviewed
Probab=26.84 E-value=4.9e+02 Score=25.18 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy15908 236 WVIFFLIGVLTACI 249 (354)
Q Consensus 236 Wlll~LIGIltGLI 249 (354)
+.+++++++..|+.
T Consensus 27 lt~~l~~~~~~~~~ 40 (240)
T PRK12768 27 LTLLLLVVLWFALR 40 (240)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444433333
No 60
>COG4652 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.72 E-value=8.5e+02 Score=27.36 Aligned_cols=29 Identities=10% Similarity=-0.071 Sum_probs=20.2
Q ss_pred HHcCCCCCccchhhHHHHHHHHHHHHhhc
Q psy15908 320 YLNGIKMPRLVRIKTLVVKTNRIAASRVC 348 (354)
Q Consensus 320 yLNGv~ip~~LslRTLvvKiVGlILAVgS 348 (354)
.++|...-.++-+-..++|++.++..+.+
T Consensus 273 ~IKgK~~~K~~m~l~~v~k~v~~liv~s~ 301 (657)
T COG4652 273 LIKGKLPFKRSMFLLTVCKLVAVLIVVSS 301 (657)
T ss_pred HhcCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 34565555666678889999887766543
No 61
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=26.50 E-value=4.9e+02 Score=27.02 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15908 234 ARWVIFFLIGVLTACI 249 (354)
Q Consensus 234 ~rWlll~LIGIltGLI 249 (354)
.+.+..+++|++.|++
T Consensus 10 ~~i~igl~lGi~~G~~ 25 (421)
T PRK13027 10 GQVVIALVLGVALGAF 25 (421)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555666666643
No 62
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=26.12 E-value=4e+02 Score=26.06 Aligned_cols=16 Identities=0% Similarity=0.179 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHH
Q psy15908 281 LVPLAVWLGFNIVPVL 296 (354)
Q Consensus 281 ~~~flvwvl~sviLal 296 (354)
++.|+.|+++.+-.++
T Consensus 197 ~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 197 FWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHhhHHHH
Confidence 4455556655544444
No 63
>COG4512 AgrB Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
Probab=26.06 E-value=4.6e+02 Score=24.98 Aligned_cols=33 Identities=18% Similarity=0.397 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15908 227 FILYKDFARWVIFFLIGVLTACIGIFIDISIEF 259 (354)
Q Consensus 227 ~~~~~~~~rWlll~LIGIltGLIA~lIdi~Ie~ 259 (354)
........+.+++..||++.|++-..+.....+
T Consensus 34 eIIl~n~fkllivy~isl~~glil~tl~~hlSy 66 (198)
T COG4512 34 EIILINLFKLLIVYAISLLHGLILLTLQIHLSY 66 (198)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888889999999999987766655443
No 64
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=25.55 E-value=6.4e+02 Score=24.65 Aligned_cols=20 Identities=25% Similarity=0.565 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15908 238 IFFLIGVLTACIGIFIDISI 257 (354)
Q Consensus 238 ll~LIGIltGLIA~lIdi~I 257 (354)
-.+++|++.|+++.++-+++
T Consensus 319 E~~~l~l~g~~~G~~lg~~~ 338 (411)
T TIGR02212 319 QGLLIGVIGTLLGVILGVLL 338 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444433
No 65
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=25.26 E-value=98 Score=30.27 Aligned_cols=19 Identities=5% Similarity=-0.218 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhcCcccc
Q psy15908 335 LVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 335 LvvKiVGlILAVgSGLSLG 353 (354)
.--|++|+++|+.+|+.-|
T Consensus 178 ~~~RivG~~LAv~aGvlyG 196 (254)
T PF07857_consen 178 RKKRIVGIILAVFAGVLYG 196 (254)
T ss_pred ccchhHhHHHHHHHHHHHh
Confidence 3349999999999998766
No 66
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=24.59 E-value=3.1e+02 Score=27.33 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=32.6
Q ss_pred HHhhhcccccCCCChhhH---------HHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 300 LLVVYVEPVALGSGIPQV---------KCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 300 lLV~~~AP~AaGSGIPEV---------KayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
--+++++-+.=|-|+|-+ -+.+-|..+++. +..+..-+++++++..=|+.+|
T Consensus 58 ~tvRrvasYGLGTGVPSIGm~alG~G~vaal~G~~i~g~--i~~~a~PI~alIia~IiG~vvG 118 (265)
T TIGR01148 58 DAVRRVASYGLGTGVPSIGMMSLGMGILAAVAGLALGGN--TPAIAAPIIALVVAAIIGGVVG 118 (265)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHhHHHHHHHHHHHcccc--chHHHHHHHHHHHHHHHHHHHH
Confidence 446777778888888865 234445556543 2446666777777766666555
No 67
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=24.15 E-value=26 Score=30.64 Aligned_cols=31 Identities=32% Similarity=0.589 Sum_probs=0.0
Q ss_pred CCCCCCccccCCccccccccchhhhhccCCCC
Q psy15908 106 EDDRPPLMQQDSETSILPRQSRSRRRKCSVLP 137 (354)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (354)
|+.|++|++.+|+..+++. .+..+.+|++=-
T Consensus 2 ~~q~~dLi~~~~e~~~l~~-~~~~~~s~sra~ 32 (114)
T PF09307_consen 2 EEQRQDLIRSNSEQTVLPV-GGPQRGSCSRAL 32 (114)
T ss_dssp --------------------------------
T ss_pred cchhcchhcCCchhcccCC-CCCCCCCccchh
Confidence 4566779978877777664 555666666543
No 68
>TIGR00930 2a30 K-Cl cotransporter.
Probab=23.84 E-value=2e+02 Score=33.16 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=17.1
Q ss_pred CCCCCccchhhHHHHHHHHHHHHhhcCc
Q psy15908 323 GIKMPRLVRIKTLVVKTNRIAASRVCRT 350 (354)
Q Consensus 323 Gv~ip~~LslRTLvvKiVGlILAVgSGL 350 (354)
|+..-..+..-.+++|+++++.-+.+|+
T Consensus 221 Gvk~~ak~q~vl~vi~ll~ll~~iig~~ 248 (953)
T TIGR00930 221 GMEWENKAQVLFLVIVLLSILNIFVGTI 248 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 5544444455567778887766666554
No 69
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=23.76 E-value=3.3e+02 Score=27.03 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15908 230 YKDFARWVIFFLIGVLTACIGIFIDIS 256 (354)
Q Consensus 230 ~~~~~rWlll~LIGIltGLIA~lIdi~ 256 (354)
.+.-.++++.+++|++.-++|..+.++
T Consensus 192 ~faRkR~i~f~llgllfliiaigltvG 218 (256)
T PF09788_consen 192 RFARKRAIIFFLLGLLFLIIAIGLTVG 218 (256)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 355566677777777776666665543
No 70
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=22.70 E-value=3.5e+02 Score=31.46 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCChhhHHHHHc
Q psy15908 283 PLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVKCYLN 322 (354)
Q Consensus 283 ~flvwvl~sviLalIAAlLV~~~AP~AaGSGIPEVKayLN 322 (354)
.|+..-+|+.+|++|=.++..+ +...|+|.+.+.++
T Consensus 363 ~~iwLqlWppLfAIIN~~m~~~----~~~~G~~~tLs~~~ 398 (942)
T PRK13735 363 ALMWLQSWPLLYAILNSAMTFY----AKQNGAPVVLSELS 398 (942)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhhcCccccchhhh
Confidence 4444457888888777655443 34455665554443
No 71
>PRK14230 camphor resistance protein CrcB; Provisional
Probab=22.63 E-value=4.6e+02 Score=22.64 Aligned_cols=24 Identities=8% Similarity=-0.086 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh
Q psy15908 281 LVPLAVWLGFNIVPVLIGSLLVVY 304 (354)
Q Consensus 281 ~~~flvwvl~sviLalIAAlLV~~ 304 (354)
+...+.|++.+++++++++++-..
T Consensus 90 ~~~a~~y~~~s~~~gl~a~~lG~~ 113 (119)
T PRK14230 90 PASALANIFLHTAGSLLLTWLGLK 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888776543
No 72
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.35 E-value=1.3e+02 Score=26.52 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15908 237 VIFFLIGVLTACIGIF 252 (354)
Q Consensus 237 lll~LIGIltGLIA~l 252 (354)
+.++++|+++|+++..
T Consensus 66 i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH
Confidence 4667777777776644
No 73
>PRK14213 camphor resistance protein CrcB; Provisional
Probab=22.24 E-value=3.6e+02 Score=23.12 Aligned_cols=25 Identities=4% Similarity=0.086 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhc
Q psy15908 281 LVPLAVWLGFNIVPVLIGSLLVVYV 305 (354)
Q Consensus 281 ~~~flvwvl~sviLalIAAlLV~~~ 305 (354)
+...+.|++.+++++++++++-...
T Consensus 92 ~~~a~~y~~~s~~~gl~a~~~G~~l 116 (118)
T PRK14213 92 VKESILYIALTLAGSLLAFWCGWTI 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888888888887765443
No 74
>PRK14208 camphor resistance protein CrcB; Provisional
Probab=21.47 E-value=3.8e+02 Score=23.29 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh
Q psy15908 281 LVPLAVWLGFNIVPVLIGSLLVVY 304 (354)
Q Consensus 281 ~~~flvwvl~sviLalIAAlLV~~ 304 (354)
+...+.|++.+++++++++++-..
T Consensus 96 ~~~a~~y~~~s~~~gl~a~~lG~~ 119 (126)
T PRK14208 96 LAAAAAYLLATVLGCLAAAFAATL 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888776543
No 75
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=20.94 E-value=2.3e+02 Score=28.64 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15908 234 ARWVIFFLIGVLTACI 249 (354)
Q Consensus 234 ~rWlll~LIGIltGLI 249 (354)
.+.++.+++|++.|++
T Consensus 3 ~~ilia~vlGi~~G~~ 18 (390)
T PF00375_consen 3 LQILIAIVLGILLGLI 18 (390)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhH
Confidence 3456677777777774
No 76
>PRK14225 camphor resistance protein CrcB; Provisional
Probab=20.77 E-value=4.5e+02 Score=23.22 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q psy15908 281 LVPLAVWLGFNIVPVLIGSLLVV 303 (354)
Q Consensus 281 ~~~flvwvl~sviLalIAAlLV~ 303 (354)
+...+.|++.+++++++++++-.
T Consensus 107 ~~~a~~y~~~s~~~gl~a~~lG~ 129 (137)
T PRK14225 107 AAFALAYLCGLVFLSLSAAMLGL 129 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888887776643
No 77
>PRK01636 ccrB camphor resistance protein CrcB; Provisional
Probab=20.56 E-value=4.1e+02 Score=22.89 Aligned_cols=23 Identities=13% Similarity=0.093 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q psy15908 281 LVPLAVWLGFNIVPVLIGSLLVV 303 (354)
Q Consensus 281 ~~~flvwvl~sviLalIAAlLV~ 303 (354)
+...+.|++.+++++++++++-.
T Consensus 80 ~~~a~~y~~~s~~~gl~a~~lG~ 102 (118)
T PRK01636 80 VLVSICYLVASLIVGYIAVELGL 102 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888777766643
No 78
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=20.29 E-value=1.8e+02 Score=32.55 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15908 235 RWVIFFLIGVLTACIGIFIDISIEFIAVF 263 (354)
Q Consensus 235 rWlll~LIGIltGLIA~lIdi~Ie~Ls~l 263 (354)
.++++++=+++++.++++|..++..+...
T Consensus 114 ~~~~~~~e~~l~~~l~~if~~~~~~~~~~ 142 (764)
T TIGR02865 114 DFILSIVEASLSFVLYYIFNYSIPCLKNG 142 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45555555666666666666666555443
No 79
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=20.28 E-value=8.5e+02 Score=25.14 Aligned_cols=31 Identities=13% Similarity=-0.121 Sum_probs=20.0
Q ss_pred HcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 321 LNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 321 LNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
..|...|.+ ...-++|.+...+++|.|++++
T Consensus 177 t~g~~~p~~--~~~~l~~~ll~P~~ig~ai~~~ 207 (459)
T PF10337_consen 177 TYGPLFPTF--FAYTLGKTLLKPFLIGIAIALV 207 (459)
T ss_pred HhCcCcCcc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 457777765 4555677777777777766654
No 80
>PRK14196 chromosome condensation membrane protein; Provisional
Probab=20.09 E-value=4.3e+02 Score=22.94 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh
Q psy15908 281 LVPLAVWLGFNIVPVLIGSLLVVY 304 (354)
Q Consensus 281 ~~~flvwvl~sviLalIAAlLV~~ 304 (354)
+...+.|++.+++++++++++-..
T Consensus 96 ~~~a~~y~~~s~~~gl~a~~lG~~ 119 (127)
T PRK14196 96 FGWALLNVALHLLGSLAMTALGFW 119 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888776543
Done!