Query psy15908
Match_columns 354
No_of_seqs 195 out of 1111
Neff 4.3
Searched_HMMs 29240
Date Sat Aug 17 00:39:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nd0_A SLL0855 protein; CLC fa 99.8 2.7E-18 9.3E-23 172.9 13.2 140 206-353 2-142 (466)
2 3org_A CMCLC; transporter, tra 99.8 4.3E-18 1.5E-22 176.0 14.1 116 231-353 6-123 (632)
3 4ene_A CLC-EC1, H(+)/CL(-) exc 99.6 1.1E-15 3.8E-20 152.8 14.6 114 233-353 18-131 (446)
4 1ots_A Voltage-gated CLC-type 99.6 2E-15 6.7E-20 151.6 14.7 115 232-353 32-146 (465)
5 4ene_A CLC-EC1, H(+)/CL(-) exc 96.8 0.0084 2.9E-07 59.9 11.7 103 237-353 238-340 (446)
6 1ots_A Voltage-gated CLC-type 96.7 0.012 4.2E-07 58.9 12.3 104 236-353 252-355 (465)
7 3nd0_A SLL0855 protein; CLC fa 96.2 0.03 1E-06 56.4 11.4 101 236-353 247-347 (466)
8 3org_A CMCLC; transporter, tra 84.0 3.7 0.00013 42.3 9.4 99 238-353 237-343 (632)
9 3d24_B Peroxisome proliferator 26.5 21 0.00072 22.8 0.8 14 87-100 9-22 (26)
10 1rh5_B Preprotein translocase 17.6 2.9E+02 0.0098 21.3 5.8 32 230-261 31-63 (74)
No 1
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=99.76 E-value=2.7e-18 Score=172.87 Aligned_cols=140 Identities=16% Similarity=0.056 Sum_probs=100.1
Q ss_pred ccccccccchhhhhHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHH
Q psy15908 206 SLDYDLMENYLTQSET-WKSYNFILYKDFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPL 284 (354)
Q Consensus 206 SLDY~~~en~lyr~~~-~r~~~~~~~~~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~f 284 (354)
..|||.+ |+.+.++. ++.++...+...+.++.++++|+++|+++.+++++++++.+++++.+... . ..++..|
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~-~----~~~~~~~ 75 (466)
T 3nd0_A 2 AADFETS-NRRWLDKLPRNLTDSARSLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQIL-A----PIPPLAW 75 (466)
T ss_dssp -------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-T----TSCTHHH
T ss_pred CccHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c----cccHHHH
Confidence 3799999 65555444 22222333455667888999999999999999999999999998775432 1 2344557
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 285 AVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 285 lvwvl~sviLalIAAlLV~~~AP~AaGSGIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
+++++++.++++++++++++++|.|+||||||||++++|...+ ..+|++++|++++++++++|+|+|
T Consensus 76 ~l~~~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~--~~~~~~~~k~~~~~ltig~G~S~G 142 (466)
T 3nd0_A 76 LVTALISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKLPL--VWQRVLPIKLVGGFLSLGAGMLAG 142 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCGGGSBCSHHHHHHHTTSSSCC--CHHHHHHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcCCCCHHHHHHHHcCCCCC--chHHHHHHHHHHHHHHHhcCCCCC
Confidence 7778888888888999999999999999999999999987654 448999999999999999999998
No 2
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.75 E-value=4.3e-18 Score=175.98 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccC
Q psy15908 231 KDFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVAL 310 (354)
Q Consensus 231 ~~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~Aa 310 (354)
+-++.+++++++|+++|+++++++++++++.+++..+. ..+. . +..|+.|+++++++++++++++++++|.|+
T Consensus 6 ~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~ 78 (632)
T 3org_A 6 YLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKIS-RLAG-----R-FAGYILYVVSGVALCLLSTFWCAVLSTEAE 78 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSC-----H-HHHHHHHHHHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh-----h-hHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 44555677789999999999999999999999876443 3222 1 567889999999999999999999999999
Q ss_pred CCChhhHHHHHcCCC--CCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 311 GSGIPQVKCYLNGIK--MPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 311 GSGIPEVKayLNGv~--ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
||||||||++++|.. +++++++|++++|++|+++++++|+++|
T Consensus 79 GsGIp~v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~G 123 (632)
T 3org_A 79 GSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVG 123 (632)
T ss_dssp BCSHHHHHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCB
T ss_pred CCCHHHHHHHHhCccccccccccHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999987 7889999999999999999999999998
No 3
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=99.65 E-value=1.1e-15 Score=152.80 Aligned_cols=114 Identities=19% Similarity=0.178 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q psy15908 233 FARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGS 312 (354)
Q Consensus 233 ~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGS 312 (354)
.+..+.++++|+++|+++.+++.+++++++++++.+... . ..++..|+++++++.++++++++++++++|.|+||
T Consensus 18 ~~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~Gs 92 (446)
T 4ene_A 18 LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-A----DNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGS 92 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-S----SSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c----ccchHHHHHHHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 445667889999999999999999999999998776432 1 23455667777788888999999999999999999
Q ss_pred ChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 313 GIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 313 GIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
||||||++++|.. ++..+|++++|++++++++++|+|+|
T Consensus 93 Gip~v~~~l~~~~--~~~~~r~~~~k~~~~~lti~~G~s~G 131 (446)
T 4ene_A 93 GIPEIEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLG 131 (446)
T ss_dssp SHHHHHHHHHTCS--CCCHHHHHHHHHHHHHHHHHTTCSCB
T ss_pred CHHHHHHHHhCCC--ccchHHHHHHHHHHHHHHHhcCCccC
Confidence 9999999999864 33448999999999999999999998
No 4
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=99.63 E-value=2e-15 Score=151.56 Aligned_cols=115 Identities=20% Similarity=0.171 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q psy15908 232 DFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALG 311 (354)
Q Consensus 232 ~~~rWlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaG 311 (354)
.+..|++++++|+++|+++.+++++++++.++++++.....+ .....|+.|+++++++++++++++++++|.++|
T Consensus 32 ~~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~l~~~~~p~a~G 106 (465)
T 1ots_A 32 PLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTAD-----NYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGG 106 (465)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-----SHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccccHHHHHHHHHHHHHHHHHHHHHHhCccccC
Confidence 367888999999999999999999999999999877543211 112336677888999999999999999999999
Q ss_pred CChhhHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 312 SGIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 312 SGIPEVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
|||||||++++|.... ..+|++++|++++++++++|+|+|
T Consensus 107 sGip~v~~~l~~~~~~--~~~r~~~~k~~~~~lti~sG~s~G 146 (465)
T 1ots_A 107 SGIPEIEGALEDQRPV--RWWRVLPVKFFGGLGTLGGGMVLG 146 (465)
T ss_dssp CSHHHHHHHHTTCSCC--CHHHHHHHHHHHHHHHHHTTCSCB
T ss_pred CChHHHHHHHhCCCCC--CcHHHHHHHHHHHHHHHhcCCCcC
Confidence 9999999999986543 448999999999999999999998
No 5
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=96.79 E-value=0.0084 Score=59.86 Aligned_cols=103 Identities=12% Similarity=0.106 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChhh
Q psy15908 237 VIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQ 316 (354)
Q Consensus 237 lll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIPE 316 (354)
...+++|++.|+++.++.....++.++...+. . .....+ +....+.+++.+.+. .+.|..-|+|-..
T Consensus 238 ~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~----~-----~~~~~~---~~~~~l~g~~~g~l~-~~~p~~~G~G~~~ 304 (446)
T 4ene_A 238 WLYLILGIIFGIFGPIFNKWVLGMQDLLHRVH----G-----GNITKW---VLMGGAIGGLCGLLG-FVAPATSGGGFNL 304 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----T-----TCHHHH---HHHHHHHHHHHHHHH-HHCGGGSSCCSTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c-----cchhHH---HHHHHHHHHHHHHHH-HHhHhhcCCcHHH
Confidence 34678999999999999988877766433221 1 111222 222222222232332 3469999999999
Q ss_pred HHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 317 VKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 317 VKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
+...++|..... +-+-.++.|++.+++++++|.+-|
T Consensus 305 i~~~~~~~~~~~-~L~~~~~~K~~~t~lt~gsG~~GG 340 (446)
T 4ene_A 305 IPIATAGNFSMG-MLVFIFVARVITTLLCFSSGAPGG 340 (446)
T ss_dssp HHHHHTTCSCHH-HHHHHHHHHHHHHHHHHTTTCSSB
T ss_pred HHHHHcCCchHH-HHHHHHHHHHHHHHHHHccCCCcc
Confidence 999998743211 113467899999999999999877
No 6
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=96.72 E-value=0.012 Score=58.90 Aligned_cols=104 Identities=12% Similarity=0.109 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChh
Q psy15908 236 WVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIP 315 (354)
Q Consensus 236 Wlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIP 315 (354)
+...+++|++.|+++.++..+..++.++...+. . .....++.. +++.+++.+.+. ++.|..-|+|-.
T Consensus 252 l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~----~-----~~~~~~~~~---~~i~gl~~g~l~-~~~P~~lG~G~~ 318 (465)
T 1ots_A 252 LWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVH----G-----GNITKWVLM---GGAIGGLCGLLG-FVAPATSGGGFN 318 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----T-----TCHHHHHHH---HHHHHHHHHHHH-HHCGGGSSCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c-----CCchhHHHH---HHHHHHHHHHHH-HHhHhhcCChHH
Confidence 556799999999999999988877776543221 0 111111122 222223333333 346999999999
Q ss_pred hHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 316 QVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 316 EVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
.+...++|..... +-+-.++.|++.+++++++|.+-|
T Consensus 319 ~i~~~~~~~~~~~-~l~~~~~~K~~~t~lt~gsG~~GG 355 (465)
T 1ots_A 319 LIPIATAGNFSMG-MLVFIFVARVITTLLCFSSGAPGG 355 (465)
T ss_dssp HHHHHHHTCSCHH-HHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred HHHHHHcCCchHH-HHHHHHHHHHHHHHHHHcCCCChh
Confidence 9999999732211 224567899999999999999877
No 7
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=96.19 E-value=0.03 Score=56.40 Aligned_cols=101 Identities=11% Similarity=-0.011 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCChh
Q psy15908 236 WVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIP 315 (354)
Q Consensus 236 Wlll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGSGIP 315 (354)
+...+++|++.|+++.++..+..++.++...+ . ..++. ..+++.+++.+.+. ++.|..-|+|-.
T Consensus 247 l~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~-----------~-~~~~~---~~~~l~g~~~g~l~-~~~p~~~G~G~~ 310 (466)
T 3nd0_A 247 LWMFIILGILFGVMGYTFNRGLFKVLDWFDRL-----------P-PLATK---WKGFLLGSIIGILS-LFPLPLTDGGDN 310 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------C-HHHHH---HHHHHHHHHHHHHT-TSSSSCSSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------c-cccHH---HHHHHHHHHHHHHH-HHHHHHcCCcHH
Confidence 34468899999999999988877665542211 0 01121 22222333333333 457999999999
Q ss_pred hHHHHHcCCCCCccchhhHHHHHHHHHHHHhhcCcccc
Q psy15908 316 QVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 316 EVKayLNGv~ip~~LslRTLvvKiVGlILAVgSGLSLG 353 (354)
.+...++|..... +-+-.++.|++.+++++++|.+-|
T Consensus 311 ~i~~~~~~~~~~~-~L~~~~~~K~~~t~lt~gsG~~GG 347 (466)
T 3nd0_A 311 AVLWAFNSQSHFS-TLILVFCGRFLLTLICYGSGAIGG 347 (466)
T ss_dssp HHHHHTTSCCCHH-HHHHHHHHHHHHHHHHHHTTCBCC
T ss_pred HHHHHHcCCccHH-HHHHHHHHHHHHHHHHHhCCCCCc
Confidence 9999998843211 224678899999999999999877
No 8
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=84.04 E-value=3.7 Score=42.32 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccCCC--Chh
Q psy15908 238 IFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGS--GIP 315 (354)
Q Consensus 238 ll~LIGIltGLIA~lIdi~Ie~Ls~lK~~l~~~~l~~c~~~~~~~~flvwvl~sviLalIAAlLV~~~AP~AaGS--GIP 315 (354)
..+++|++.|+++.++..+..++..++. .++.. .. .+ ++.+ +.+++.+.+ +.|...|. |-.
T Consensus 237 ~~~~lGi~~Gl~g~~f~~~~~~~~~~~~---~~~~~----~~---~~-~~~~---~~~~~~~~l---~~p~~~g~~~~~~ 299 (632)
T 3org_A 237 LYAILGALMGVLGALFIRCVRSIYELRM---RHYPG----TN---RY-FLVG---VVALFASAL---QYPFRLFALDPRA 299 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSSTT----CC---TH-HHHH---HHHHHHHHH---TTTC------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhcc----hh---HH-HHHH---HHHHHHHHH---HHHHHhcCCcHHH
Confidence 5689999999999999887766655421 11111 01 11 1111 112222222 24665554 344
Q ss_pred hHHHHHcCCCC-----Ccc-chhhHHHHHHHHHHHHhhcCcccc
Q psy15908 316 QVKCYLNGIKM-----PRL-VRIKTLVVKTNRIAASRVCRTCGT 353 (354)
Q Consensus 316 EVKayLNGv~i-----p~~-LslRTLvvKiVGlILAVgSGLSLG 353 (354)
.+...+++... ..+ .-+-.++.|++.++++.++|.+-|
T Consensus 300 ~i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~pGG 343 (632)
T 3org_A 300 TINDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPAG 343 (632)
T ss_dssp HHHHHHSCC----------CCSSHHHHHHHHHHHHHTTSSSBCB
T ss_pred HHHHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 55555554321 111 113457899999999999999877
No 9
>3d24_B Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; nuclear receptor, ligand binding domain, DNA- binding, metal-binding, nucleus; 2.11A {Homo sapiens}
Probab=26.46 E-value=21 Score=22.78 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=10.8
Q ss_pred hhhhhhhhhccccc
Q psy15908 87 SMTESHKYLITSNE 100 (354)
Q Consensus 87 ~~~~~~~~~~~~~~ 100 (354)
+-||+||||-.+.+
T Consensus 9 pCtELlKyLTs~~~ 22 (26)
T 3d24_B 9 PCSELLKYLTTNDD 22 (26)
T ss_pred cHHHHHHHHhcCCc
Confidence 56999999976543
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=17.55 E-value=2.9e+02 Score=21.25 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy15908 230 YKDFARWVIFFLIGVL-TACIGIFIDISIEFIA 261 (354)
Q Consensus 230 ~~~~~rWlll~LIGIl-tGLIA~lIdi~Ie~Ls 261 (354)
++++.+.+.+..+|++ +|++++++.+..-.+.
T Consensus 31 r~EF~~iak~~~iG~~imG~IGfiIkli~ipIn 63 (74)
T 1rh5_B 31 KDEYLAVAKVTALGISLLGIIGYIIHVPATYIK 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666653 5788887776544433
Done!