RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15908
(354 letters)
>gnl|CDD|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins. This CD
includes ClC-6, ClC-7 and ClC-B, C, D in plants.
Proteins in this family are ubiquitous in eukarotes and
their functions are unclear. They are expressed in
intracellular organelles membranes. This family belongs
to the ClC superfamily of chloride ion channels, which
share the unique double-barreled architecture and
voltage-dependent gating mechanism. The gating is
conferred by the permeating anion itself, acting as the
gating charge. ClC chloride ion channel superfamily
perform a variety of functions including cellular
excitability regulation, cell volume regulation,
membrane potential stabilization, acidification of
intracellular organelles, signal transduction, and
transepithelial transport in animals.
Length = 466
Score = 167 bits (425), Expect = 7e-48
Identities = 58/135 (42%), Positives = 89/135 (65%), Gaps = 4/135 (2%)
Query: 205 ESLDYDLMENYLTQSETWK-SYNFILYKDFARWVIFFLIGVLTACIGIFIDISIEFIAVF 263
ESLDY+++EN L + E K +L +F +W+I LIG+ T + FID+++E +A
Sbjct: 1 ESLDYEVIENDLFREEWRKRKKKQVLQYEFLKWIICLLIGIFTGLVAYFIDLAVENLAGL 60
Query: 264 KYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVKCYLNG 323
K+ +K Y++ + V+LG N+V VL+ +LLV Y+ P A GSGIP+VK YLNG
Sbjct: 61 KFLVVKNYIEKGR---LFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNG 117
Query: 324 IKMPRLVRIKTLVVK 338
+K+P ++R+KTL+VK
Sbjct: 118 VKIPHILRLKTLLVK 132
>gnl|CDD|238507 cd01036, ClC_euk, Chloride channel, ClC. These domains are found
in the eukaryotic halogen ion (Cl-, Br- and I-) channel
proteins that perform a variety of functions including
cell volume regulation, membrane potential
stabilization, charge compensation necessary for the
acidification of intracellular organelles, signal
transduction and transepithelial transport. They are
also involved in many pathophysiological processes and
are responsible for a number of human diseases. These
proteins belong to the ClC superfamily of chloride ion
channels, which share the unique double-barreled
architecture and voltage-dependent gating mechanism.
The gating is conferred by the permeating anion itself,
acting as the gating charge. Some proteins possess long
C-terminal cytoplasmic regions containing two CBS
(cystathionine beta synthase) domains of putative
regulatory function.
Length = 416
Score = 75.1 bits (185), Expect = 7e-15
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 243 GVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLV 302
G+L + + +D ++E ++L L+ +W+ +++V VLI S +
Sbjct: 1 GLLMGLVAVVLDYAVESSL-----DAGQWLLRRIPGSYLLGYLMWVLWSVVLVLISSGIC 55
Query: 303 VYVEPVALGSGIPQVKCYLNGIKMPRLVRIKTLVVKT 339
+Y P A GSGIP+V YLNG+ +P + I+TL+ KT
Sbjct: 56 LYFAPQAAGSGIPEVMAYLNGVHLPMYLSIRTLIAKT 92
>gnl|CDD|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins. This CD
includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1
is expressed in skeletal muscle and its mutation leads
to both recessively and dominantly-inherited forms of
muscle stiffness or myotonia. ClC-K is exclusively
expressed in kidney. Similarly, mutation of ClC-K leads
to nephrogenic diabetes insipidus in mice and Bartter's
syndrome in human. These proteins belong to the ClC
superfamily of chloride ion channels, which share the
unique double-barreled architecture and
voltage-dependent gating mechanism. The gating is
conferred by the permeating anion itself, acting as the
gating charge. This domain is found in the eukaryotic
halogen ion (Cl-, Br- and I-) channel proteins, that
perform a variety of functions including cell volume
regulation, regulation of intracelluar chloride
concentration, membrane potential stabilization, charge
compensation necessary for the acidification of
intracellular organelles and transepithelial chloride
transport.
Length = 426
Score = 74.2 bits (183), Expect = 1e-14
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 236 WVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPV 295
W+ L+G+L A I I +D AV K +R+L + L+ VW+ + + V
Sbjct: 2 WLFLALLGILMALISIAMDF-----AVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALV 56
Query: 296 LIGSLLVVYVEPVALGSGIPQVKCYLNGIKMPRLVRIKTLVVKT 339
L +L Y+ P A+GSGIP++K L G+ +P + KTLV K
Sbjct: 57 LFSALFCKYISPQAVGSGIPEMKTILRGVVLPEYLTFKTLVAKV 100
>gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC. This domain is found in
the EriC chloride transporters that mediate the extreme
acid resistance response in eubacteria and archaea. This
response allows bacteria to survive in the acidic
environments by decarboxylation-linked proton
utilization. As shown for Escherichia coli EriC, these
channels can counterbalance the electric current
produced by the outwardly directed virtual proton pump
linked to amino acid decarboxylation. The EriC proteins
belong to the ClC superfamily of chloride ion channels,
which share a unique double-barreled architecture and
voltage-dependent gating mechanism. The
voltage-dependent gating is conferred by the permeating
anion itself, acting as the gating charge. In
Escherichia coli EriC, a glutamate residue that
protrudes into the pore is thought to participate in
gating by binding to a Cl- ion site within the
selectivity filter.
Length = 402
Score = 61.0 bits (149), Expect = 3e-10
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 242 IGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLL 301
IG+L + + + I+ + + S +N L V + V L+ L
Sbjct: 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAANN------PPLLLVLPLISAVLGLLAGWL 54
Query: 302 VVYVEPVALGSGIPQVKCYLNGIKMPRLVRIKTLVVK 338
V P A GSGIPQV+ L G+ P R+ L VK
Sbjct: 55 VKKFAPEAKGSGIPQVEGVLAGLLPPNWWRV--LPVK 89
>gnl|CDD|239656 cd03684, ClC_3_like, ClC-3-like chloride channel proteins. This CD
includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was
initially cloned from rat kidney. Expression of ClC-3
produces outwardly-rectifying Cl currents that are
inhibited by protein kinase C activation. It has been
suggested that ClC-3 may be a ubiquitous
swelling-activated Cl channel that has very similar
characteristics to those of native volume-regulated Cl
currents. The function of ClC-4 is unclear. Studies of
human ClC-4 have revealed that it gives rise to Cl
currents that rapidly activate at positive voltages, and
are sensitive to extracellular pH, with currents
decreasing when pH falls below 6.5. ClC-4 is broadly
distributed, especially in brain and heart. ClC-5 is
predominantly expressed in the kidney, but can be found
in the brain and liver. Mutations in the ClC-5 gene
cause certain hereditary diseases, including Dent's
disease, an X-chromosome linked syndrome characterised
by proteinuria, hypercalciuria, and kidney stones
(nephrolithiasis), leading to progressive renal failure.
These proteins belong to the ClC superfamily of
chloride ion channels, which share the unique
double-barreled architecture and voltage-dependent
gating mechanism. The gating is conferred by the
permeating anion itself, acting as the gating charge.
This domain is found in the eukaryotic halogen ion (Cl-
and I-) channel proteins, that perform a variety of
functions including cell volume regulation, the membrane
potential stabilization, transepithelial chloride
transport and charge compensation necessary for the
acidification of intracellular organelles.
Length = 445
Score = 56.1 bits (136), Expect = 9e-09
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 243 GVLTACIGIFIDISIEFIAVFK--YSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSL 300
G+ I IDI +++ K Y Y+ + V LA+ F I L
Sbjct: 1 GIAIGLIAGLIDIIASWLSDLKEGYC---NYI-------IYVLLALLFAF------IAVL 44
Query: 301 LVVYVEPVALGSGIPQVKCYLNGIKMPRLVRIKTLVVKT 339
LV V P A GSGIP++K L+G + + TL++K+
Sbjct: 45 LVKVVAPYAAGSGIPEIKTILSGFIIRGFLGKWTLLIKS 83
>gnl|CDD|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion
transport and metabolism].
Length = 443
Score = 49.6 bits (119), Expect = 1e-06
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Query: 225 YNFILYKDFARWVIF-FLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVP 283
L A + +GV+ + +D+++ + + L LVP
Sbjct: 11 RTMRLLIALAVLIGIAAALGVIVGLFAVALDLALLLLGRLRGGLLSAAQAPGPWLLPLVP 70
Query: 284 LAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVKCYLNGIKMPRLVRIKTLVVK 338
G L+G+LLV P A GSGIPQ L+G K + + L VK
Sbjct: 71 AL--GGL-----LVGALLVYKFAPEARGSGIPQAIEALHGRKGR--ISPRVLPVK 116
>gnl|CDD|235385 PRK05277, PRK05277, chloride channel protein; Provisional.
Length = 438
Score = 44.5 bits (106), Expect = 6e-05
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 241 LIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSL 300
++G LT +G+ +++++++ + L + + G+L+ + +L + V +IG
Sbjct: 6 VVGTLTGLVGVAFELAVDWV----QNQRLGLLASVADNGLLLWIVAFL-ISAVLAMIGYF 60
Query: 301 LVVYVEPVALGSGIPQVKCYLNGIKMPRLVRIKTLVVK 338
LV P A GSGIP+++ L G++ R R+ L VK
Sbjct: 61 LVRRFAPEAGGSGIPEIEGALEGLRPVRWWRV--LPVK 96
>gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel. This
family of ion channels contains 10 or 12 transmembrane
helices. Each protein forms a single pore. It has been
shown that some members of this family form homodimers.
In terms of primary structure, they are unrelated to
known cation channels or other types of anion channels.
Three ClC subfamilies are found in animals. ClC-1 is
involved in setting and restoring the resting membrane
potential of skeletal muscle, while other channels play
important parts in solute concentration mechanisms in
the kidney. These proteins contain two pfam00571
domains.
Length = 345
Score = 42.5 bits (101), Expect = 2e-04
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 295 VLIGSLLVVYVEPVALGSGIPQVKCYLNGIKMPRLVRIKTLVVKT 339
L+ LLV A GSGIP+V L+G+K P + ++ L+VK
Sbjct: 3 GLLAGLLVKRFPEAA-GSGIPEVIAALHGVKGP--LPLRVLLVKF 44
Score = 28.7 bits (65), Expect = 5.1
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 19/117 (16%)
Query: 236 WVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPV 295
+F L+G+L +G F+ + + + +L P L
Sbjct: 161 LPLFILLGILCGLLGAL------FVRLL-LKVERLFRRLKKLPPILRPALGGL------- 206
Query: 296 LIGSLLVVYVEPVALGSGIPQVKCYLNGIKMPRLVRIKTLVVKTNRIAASRVCRTCG 352
L+G L+ P LG G ++ LNG + L+ + L++K + A+ + G
Sbjct: 207 LVG--LLGLFLPEVLGGGYGLIQLLLNGSTLSLLLLLLLLLLK---LLATALSLGSG 258
>gnl|CDD|238506 cd01034, EriC_like, ClC chloride channel family. These protein
sequences, closely related to the ClC Eric family, are
putative halogen ion (Cl-, Br- and I-) transport
proteins found in eubacteria. They belong to the ClC
superfamily of chloride ion channels, which share a
unique double-barreled architecture and
voltage-dependent gating mechanism. This superfamily
lacks any structural or sequence similarity to other
known ion channels and exhibit unique properties of ion
permeation and gating. The voltage-dependent gating is
conferred by the permeating anion itself, acting as the
gating charge.
Length = 390
Score = 37.6 bits (88), Expect = 0.007
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 280 MLVPLAVWLGFNIVPVLIGSLLVVYVE----PVALGSGIPQVKCYLNGIKMP------RL 329
L WL + P G L+ ++ P A GSGIPQV + +++P RL
Sbjct: 20 RLTATHPWLPLLLTP--AGFALIAWLTRRFFPGAAGSGIPQV---IAALELPSAAARRRL 74
Query: 330 VRIKTLVVK 338
+ ++T V K
Sbjct: 75 LSLRTAVGK 83
>gnl|CDD|224099 COG1178, ThiP, ABC-type Fe3+ transport system, permease component
[Inorganic ion transport and metabolism].
Length = 540
Score = 33.0 bits (76), Expect = 0.24
Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 23/116 (19%)
Query: 222 WKSYNFILYKDFARWVIF------FLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNS 275
++ L A + L+ + A + + + + + + S L R L+
Sbjct: 315 VLNWGRPLSLVLASPQFWQALLNSLLLALAAALLAVVLALLLAYAVRRLRSRLSRLLERL 374
Query: 276 GNTGMLVP---LAV-------------WLGFNIVPVLIGSLLVVYVEPVALGSGIP 315
+ VP LA+ + + +L+ + + ++ P A+ S
Sbjct: 375 SMLPLAVPGVVLALGLLLLFRAPDGLLYQPLYTLLILVLAYALRFL-PFAVRSLRA 429
>gnl|CDD|226842 COG4413, Utp, Urea transporter [Amino acid transport and
metabolism].
Length = 319
Score = 32.5 bits (74), Expect = 0.30
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 18/97 (18%)
Query: 238 IFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLI 297
+FFLI + + ++ + + L D+S G+ G+N VL+
Sbjct: 30 LFFLIAIFVGAPTLGAAAALGSVLGPLVARLIHCSDSSIRAGL-------YGYN--GVLV 80
Query: 298 GSLLVVYVEP-------VALGS--GIPQVKCYLNGIK 325
G+ L ++ V LG + L+ ++
Sbjct: 81 GAALPFFLAWSPGLWSIVVLGCLVSVAVQAAVLHILR 117
>gnl|CDD|215546 PLN03031, PLN03031, hypothetical protein; Provisional.
Length = 102
Score = 29.7 bits (67), Expect = 0.71
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 137 PTVDTVIETTIKKGKVTHIQIKS--KPIKTKPVPTCCENHQ 175
VD +E+ KK + I I++ KPI TKPV + +
Sbjct: 7 SQVDGGLESDGKKWVIAGISIRAPLKPISTKPVAKEEDEEE 47
>gnl|CDD|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel. The
ClC chloride channels catalyse the selective flow of Cl-
ions across cell membranes, thereby regulating
electrical excitation in skeletal muscle and the flow of
salt and water across epithelial barriers. This domain
is found in the halogen ions (Cl-, Br- and I-) transport
proteins of the ClC family. The ClC channels are found
in all three kingdoms of life and perform a variety of
functions including cellular excitability regulation,
cell volume regulation, membrane potential
stabilization, acidification of intracellular
organelles, signal transduction, transepithelial
transport in animals, and the extreme acid resistance
response in eubacteria. They lack any structural or
sequence similarity to other known ion channels and
exhibit unique properties of ion permeation and gating.
Unlike cation-selective ion channels, which form
oligomers containing a single pore along the axis of
symmetry, the ClC channels form two-pore homodimers with
one pore per subunit without axial symmetry. Although
lacking the typical voltage-sensor found in cation
channels, all studied ClC channels are gated (opened and
closed) by transmembrane voltage. The gating is
conferred by the permeating ion itself, acting as the
gating charge. In addition, eukaryotic and some
prokaryotic ClC channels have two additional C-terminal
CBS (cystathionine beta synthase) domains of putative
regulatory function.
Length = 383
Score = 31.4 bits (72), Expect = 0.71
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 243 GVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPVLIGSLLV 302
GVL+ + + IE + + L L + + + L +G L+ LLV
Sbjct: 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIG-----GLLVGLLV 55
Query: 303 VYVEPVALGSGIPQV 317
+ P A G GIP+V
Sbjct: 56 RLLGP-ARGHGIPEV 69
>gnl|CDD|226534 COG4048, COG4048, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 123
Score = 29.8 bits (67), Expect = 0.81
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 102 ESSGEDDRPPLMQQDSETSILPRQSRSRRRKCSVL---PTVDT-----VIETTIKKGKVT 153
+S+ E+ P + + LP RSR + L VD V+E ++KG+V
Sbjct: 6 DSTAEELEPIAIAVHELVNRLPVTIRSRNKPGLRLEKGEVVDDNYTGPVLEEVLEKGEVV 65
Query: 154 HIQIKSKPIKTKPVPTC 170
P + PV
Sbjct: 66 REVPIIGPYRGLPVVVA 82
>gnl|CDD|238461 cd00919, Heme_Cu_Oxidase_I, Heme-copper oxidase subunit I.
Heme-copper oxidases are transmembrane protein complexes
in the respiratory chains of prokaryotes and
mitochondria which catalyze the reduction of O2 and
simultaneously pump protons across the membrane. The
superfamily is diverse in terms of electron donors,
subunit composition, and heme types. The number of
subunits varies from three to five in bacteria and up to
13 in mammalian mitochondria. It has been proposed that
Archaea acquired heme-copper oxidases through gene
transfer from Gram-positive bacteria. Membership in the
superfamily is defined by subunit I, which contains a
heme-copper binuclear center (the active site where O2
is reduced to water) formed by a high-spin heme and a
copper ion. It also contains a low-spin heme, believed
to participate in the transfer of electrons to the
binuclear center. Only subunit I is common to the
entire superfamily. For every reduction of an O2
molecule, eight protons are taken from the inside
aqueous compartment and four electrons are taken from
the electron donor on the opposite side of the membrane.
The four electrons and four of the protons are used in
the reduction of O2; the four remaining protons are
pumped across the membrane. This charge separation of
four charges contributes to the electrochemical gradient
used for ATP synthesis. Two proton channels, the
D-pathway and K-pathway, leading to the binuclear center
have been identified in subunit I of cytochrome c
oxidase (CcO) and ubiquinol oxidase. A well-defined
pathway for the transfer of pumped protons beyond the
binuclear center has not been identified. Electron
transfer occurs in two segments: from the electron
donor to the low-spin heme, and from the low-spin heme
to the binuclear center. The first segment can be a
multi-step process and varies among the different
families, while the second segment, a direct transfer,
is consistent throughout the superfamily.
Length = 463
Score = 31.3 bits (72), Expect = 0.84
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 13/73 (17%)
Query: 236 WVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVPV 295
V ++G+ A + I +I FI T+ G T +PL VW V
Sbjct: 130 GVDLAILGLHLAGVS-SILGAINFIT-----TILNMR-APGMTLDKMPLFVWS------V 176
Query: 296 LIGSLLVVYVEPV 308
L+ ++L++ PV
Sbjct: 177 LVTAILLLLALPV 189
>gnl|CDD|217095 pfam02544, Steroid_dh, 3-oxo-5-alpha-steroid 4-dehydrogenase. This
family consists of 3-oxo-5-alpha-steroid
4-dehydrogenases, EC:1.3.99.5 Also known as Steroid
5-alpha-reductase, the reaction catalyzed by this enzyme
is: 3-oxo-5-alpha-steroid + acceptor <=>
3-oxo-delta(4)-steroid + reduced acceptor. The Steroid
5-alpha-reductase enzyme is responsible for the
formation of dihydrotestosterone, this hormone promotes
the differentiation of male external genitalia and the
prostate during fetal development. In humans mutations
in this enzyme can cause a form of male
pseudohermaphorditism in which the external genitalia
and prostate fail to develop normally. A related enzyme
is also found in plants is DET2, a steroid reductase
from Arabidopsis. Mutations in this enzyme cause defects
in light-regulated development.
Length = 150
Score = 30.1 bits (68), Expect = 0.89
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 14/81 (17%)
Query: 214 NYLTQSETWKSYNFILYKDFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLK-RYL 272
N L Q + SY +D+ FLIG+ G+ I+I S + R L
Sbjct: 18 NGLIQG-RYNSYYQPYAEDWV-TDPRFLIGIGLFVTGMLINI---------KSDIILRTL 66
Query: 273 DNSGNTGMLVPLAVWLGFNIV 293
GNTG +P F +V
Sbjct: 67 RKPGNTGYKIPRGGL--FELV 85
>gnl|CDD|218360 pfam04982, HPP, HPP family. These proteins are integral membrane
proteins with four transmembrane spanning helices. The
most conserved region of the alignment is a motif HPP.
The function of these proteins is uncertain but they may
be transporters.
Length = 120
Score = 29.0 bits (66), Expect = 1.6
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 278 TGMLVPLAVWLGFNIVPVLIGSLLVV 303
+L A+ GF +VPVL+GSLL+V
Sbjct: 79 LAVLGGPALGYGFLLVPVLLGSLLLV 104
>gnl|CDD|219123 pfam06653, Claudin_3, Tight junction protein, Claudin-like. This
is a family of probable membrane tight junction,
Claudin-like, proteins.
Length = 165
Score = 29.3 bits (66), Expect = 1.9
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 238 IFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAV 286
+FFLI +L+ I I ++ IA+ S Y D+S G LAV
Sbjct: 94 LFFLIALLSLLIAILTVVAFILIAINLSSFNDSYNDSSVQLGYSAWLAV 142
>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated.
Length = 447
Score = 29.3 bits (67), Expect = 3.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 298 GSLLVVYVEPVALG 311
G+L +V V+PV+LG
Sbjct: 233 GALFIVGVDPVSLG 246
>gnl|CDD|225336 COG2715, SpmA, Uncharacterized membrane protein, required for spore
maturation in B.subtilis. [General function prediction
only].
Length = 206
Score = 28.6 bits (64), Expect = 3.7
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 236 WVIFFLIGVLTACI-GIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGF 290
W+ FFL+G + A + G F ++ A+F + + G++ +A+WLG
Sbjct: 6 WLAFFLVGTVFAVVNGTFAAVN---EAIFNSAKTAVEI----MIGLIGIMALWLGL 54
>gnl|CDD|115201 pfam06529, Vert_IL3-reg_TF, Vertebrate interleukin-3 regulated
transcription factor. This family includes vertebrate
transcription factors, some of which are regulated by
IL-3/adenovirus E4 promoter binding protein. Others were
found to strongly repress transcription in a
DNA-binding-site-dependent manner.
Length = 333
Score = 29.0 bits (64), Expect = 4.0
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 10 TSNEAESSGEDDRPPLMQQDSETSILPRQSRSRRRKCSVLPTVDTVIETTIKKGASN--- 66
+S A +S D+ P M S S++ +S S +P+V+ E+ + G +
Sbjct: 25 SSKAAINSFVDEHEPAMVAGSCISVIKHSPQSSLSDMSEMPSVEHTQESPAQGGCRSPEN 84
Query: 67 ---IISS---KFESLDYDLMENYLTQSMTESHKYLITSNETESSGEDDRPPLMQQDSETS 120
II + ES + ++ + + Y+ +S S PPL+Q +S
Sbjct: 85 KFPIIKQEPIELESFAREARDDRGSYKASIYPNYMGSSFNMYSHS----PPLLQVHGSSS 140
Query: 121 ILPRQSRS 128
PR S +
Sbjct: 141 NSPRTSEA 148
>gnl|CDD|225514 COG2966, COG2966, Uncharacterized conserved protein [Function
unknown].
Length = 250
Score = 28.8 bits (65), Expect = 4.1
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 231 KDFARWVIFFLIGVLTACI-----GIFIDISIEFIAVFKYSTLKRYLDNSGN 277
++RW++ + G+ A G ++D I F A L++YL GN
Sbjct: 121 LRYSRWLVLLMAGLAAAAFALLFGGGWLDFLIAFFAGLLGFLLRQYLSRKGN 172
>gnl|CDD|224183 COG1263, PtsG, Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific
[Carbohydrate transport and metabolism].
Length = 393
Score = 28.7 bits (65), Expect = 4.9
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 238 IFFLIGV-------------LTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPL 284
+FF IGV L A IG + ++ + + ++G G VPL
Sbjct: 68 LFFPIGVAISAAKKFGGTAALAAVIGYLL-VNPALLNAWGLGAAGIPTLDTGVFGFPVPL 126
Query: 285 AVWLGFNIVPVLIGSLLVVYVEPVALG 311
++ G ++P+L ++ +EP L
Sbjct: 127 GIYQG-TVIPILYNRFYLIKIEPELLK 152
>gnl|CDD|217354 pfam03073, TspO_MBR, TspO/MBR family. Tryptophan-rich sensory
protein (TspO) is an integral membrane protein that acts
as a negative regulator of the expression of specific
photosynthesis genes in response to oxygen/light. It is
involved in the efflux of porphyrin intermediates from
the cell. This reduces the activity of
coproporphyrinogen III oxidase, which is thought to lead
to the accumulation of a putative repressor molecule
that inhibits the expression of specific photosynthesis
genes. Several conserved aromatic residues are necessary
for TspO function: they are thought to be involved in
binding porphyrin intermediates. In, the rat
mitochondrial peripheral benzodiazepine receptor (MBR)
was shown to not only retain its structure within a
bacterial outer membrane, but also to be able to
functionally substitute for TspO in TspO- mutants, and
to act in a similar manner to TspO in its in situ
location: the outer mitochondrial membrane. The
biological significance of MBR remains unclear, however.
It is thought to be involved in a variety of cellular
functions, including cholesterol transport in
steroidogenic tissues.
Length = 147
Score = 27.5 bits (62), Expect = 6.8
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 14/52 (26%)
Query: 239 FFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGF 290
+I +L + I +A ++ S L L LVP +W+ F
Sbjct: 99 LIVILLLWLLVLATI------VAFWRVSRLAALL--------LVPYLLWVSF 136
>gnl|CDD|223909 COG0839, NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J)
[Energy production and conversion].
Length = 166
Score = 27.2 bits (61), Expect = 8.2
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 20/90 (22%)
Query: 237 VIFFLIGVLTACIGIFIDISIEFIAV---------------FKYSTLKRYLDNSGNTG-- 279
+L L + +F + EF+ V F L +D +
Sbjct: 31 SALYLALTLLSIAALFFLLGAEFLGVVQVLVYVGAVMVLFLFVVMMLN--VDGAEVREEG 88
Query: 280 -MLVPLAVWLGFNIVPVLIGSLLVVYVEPV 308
PLA +G ++ +LI S+ VV V
Sbjct: 89 LRGKPLAALVGLVLLALLIISVAVVSGAFV 118
>gnl|CDD|222436 pfam13886, DUF4203, Domain of unknown function (DUF4203). This is
the N-terminal region of 7tm proteins. The function is
not known.
Length = 210
Score = 27.6 bits (62), Expect = 8.2
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 18/85 (21%)
Query: 225 YNFILYKDFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPL 284
Y FI Y+ F FL G L + + F+ + K + L
Sbjct: 14 YCFIGYRCF--KATMFLSGFLFGSLIV-------FLLITKITLLVTN---------ARLG 55
Query: 285 AVWLGFNIVPVLIGSLLVVYVEPVA 309
A + + ++G L V++
Sbjct: 56 ASLVAGVVGGAILGLLWWVFLIVSV 80
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.395
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,344,011
Number of extensions: 1634367
Number of successful extensions: 1674
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1660
Number of HSP's successfully gapped: 54
Length of query: 354
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 256
Effective length of database: 6,590,910
Effective search space: 1687272960
Effective search space used: 1687272960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)