RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15908
         (354 letters)



>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
           [TaxId: 562]}
          Length = 444

 Score = 69.8 bits (170), Expect = 7e-14
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 233 FARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNI 292
            A   +  ++G L     +  D  + ++   +   L    DN       + L V    + 
Sbjct: 17  LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYP-----LLLTVAFLCSA 71

Query: 293 VPVLIGSLLVVYVEPVALGSGIPQVKCYLNGIKMPRLVRI 332
           V  + G  LV    P A GSGIP+++  L   +  R  R+
Sbjct: 72  VLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWWRV 111


>d1jnra3 d.168.1.1 (A:257-401) Adenylylsulfate reductase A subunit
           {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 145

 Score = 27.4 bits (61), Expect = 1.7
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 154 HIQIKSKPIKTKPVPTCCENHQFFFQM-SCRQ--YNFRLAFAFPGASNIISSKFESLDYD 210
            ++        +P+PT   NHQ   ++    Q  Y      A    +     K + +  +
Sbjct: 43  ELEKYKPYGAAQPIPTPLRNHQVMLEIMDGNQPIY-MHTEEALAELAGGDKKKLKHIYEE 101

Query: 211 LMENYL----TQSETWKSYN 226
             E++L    +Q+  W   N
Sbjct: 102 AFEDFLDMTVSQALLWACQN 121


>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system
           permease protein WtpB (ModB) {Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 252

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 8/74 (10%), Positives = 28/74 (37%)

Query: 235 RWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSGNTGMLVPLAVWLGFNIVP 294
           R +   L+ +L++ I +F+ + +      +      +L  + +  +   +       ++ 
Sbjct: 2   RLLFSALLALLSSIILLFVLLPVAATVTLQLFNFDEFLKAASDPAVWKVVLTTYYAALIS 61

Query: 295 VLIGSLLVVYVEPV 308
            LI  +    +  +
Sbjct: 62  TLIAVIFGTPLAYI 75


>d2j7qa1 d.3.1.20 (A:1-232) Tegument protein M48; N-terminal domain
           {Murine cytomegalovirus (MCMV) [TaxId: 10366]}
          Length = 232

 Score = 27.1 bits (60), Expect = 2.5
 Identities = 9/84 (10%), Positives = 25/84 (29%), Gaps = 11/84 (13%)

Query: 179 QMSCRQYNFRLAFAFPGASNIISSKFESLDYD--------LMENYLTQSETWKSYNFILY 230
           + +   + +RL    P    +I +      +              L   +     +F+ Y
Sbjct: 68  RQALTDHPYRLGTEIP---TVIETPAGITGHALSRPFNGTAETQDLGGYKCLGILDFLTY 124

Query: 231 KDFARWVIFFLIGVLTACIGIFID 254
                  ++ ++ V     G+ + 
Sbjct: 125 ARGKPLPVYIIVTVGVHTRGVIVA 148


>d2hxva1 c.71.1.2 (A:148-345) Riboflavin biosynthesis protein RibD
           {Thermotoga maritima [TaxId: 2336]}
          Length = 198

 Score = 26.8 bits (58), Expect = 3.1
 Identities = 14/122 (11%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 217 TQSETWKSYNFILYKDFARWVIFFLIGVLTACIGIFIDISIEFIAVFKYSTLKRYLDNSG 276
            +        F ++++ AR ++F       +    +     + ++     ++ R L    
Sbjct: 73  DRKGVLSGKVFRVFEENARVIVF-----TESEEAEYPPHVEKALSDCSVESILRNLYERD 127

Query: 277 NTGMLVPLAVWLGFNIVPVLIGSLLVVYVEPVALGSGIPQVKCYLNGIKMP---RLVRIK 333
              +LV     +    +      ++  +      G G+     YL+ + +P   ++V ++
Sbjct: 128 IDSVLVEGGSKVFSEFLD--HADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVE 185

Query: 334 TL 335
             
Sbjct: 186 FS 187


>d1hcfa_ g.17.1.3 (A:) Neurotrophin 4, NT4 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 127

 Score = 25.2 bits (55), Expect = 7.6
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 12/78 (15%)

Query: 174 HQFFFQMSCRQYNFRLAFAFPGASNI--ISSKFESLDYDLMENYLTQSETWKSYNFILYK 231
            Q+FF+  C+  N        G      +  +          +++++ +  +SY   L  
Sbjct: 53  RQYFFETRCKADNAEEGGPGAGGGGCRGVDRR----------HWVSECKAKQSYVRALTA 102

Query: 232 DFARWVIFFLIGVLTACI 249
           D    V +  I + TAC+
Sbjct: 103 DAQGRVGWRWIRIDTACV 120


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,242,698
Number of extensions: 56181
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 13
Length of query: 354
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 268
Effective length of database: 1,226,816
Effective search space: 328786688
Effective search space used: 328786688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)