Query psy15910
Match_columns 404
No_of_seqs 342 out of 1889
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 16:20:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3946|consensus 100.0 1.8E-61 3.8E-66 465.8 17.2 278 7-403 6-288 (338)
2 PRK10199 alkaline phosphatase 99.9 2.5E-25 5.4E-30 223.6 21.1 151 182-354 53-222 (346)
3 PF04389 Peptidase_M28: Peptid 99.9 5.1E-22 1.1E-26 179.1 9.5 100 231-351 1-103 (179)
4 TIGR03176 AllC allantoate amid 99.8 6.3E-20 1.4E-24 187.5 14.7 131 149-309 3-139 (406)
5 PRK13799 unknown domain/N-carb 99.7 3.5E-17 7.7E-22 175.2 14.1 132 148-309 180-321 (591)
6 PRK13590 putative bifunctional 99.7 5.1E-17 1.1E-21 173.9 14.3 133 148-310 180-322 (591)
7 TIGR01879 hydantase amidase, h 99.7 3.2E-16 7E-21 159.2 14.9 131 150-310 2-138 (401)
8 PRK12891 allantoate amidohydro 99.7 6.3E-16 1.4E-20 157.8 15.0 133 147-309 8-146 (414)
9 COG2234 Iap Predicted aminopep 99.6 8.5E-16 1.8E-20 157.0 11.5 103 215-342 181-295 (435)
10 KOG2194|consensus 99.6 2.5E-15 5.4E-20 163.7 14.0 172 178-376 75-273 (834)
11 PRK12890 allantoate amidohydro 99.5 6.3E-14 1.4E-18 142.7 14.7 135 147-312 7-147 (414)
12 PRK12892 allantoate amidohydro 99.5 1.3E-13 2.8E-18 139.9 15.3 136 144-310 5-145 (412)
13 PRK09290 allantoate amidohydro 99.4 2.1E-12 4.6E-17 131.6 14.9 140 143-310 1-144 (413)
14 PRK12893 allantoate amidohydro 99.4 2.4E-12 5.2E-17 130.8 15.2 137 144-310 5-147 (412)
15 KOG2195|consensus 99.4 2.2E-12 4.8E-17 140.3 11.5 118 216-359 336-456 (702)
16 PRK06133 glutamate carboxypept 99.3 2.7E-11 6E-16 123.7 16.4 114 181-311 57-184 (410)
17 TIGR01910 DapE-ArgE acetylorni 99.2 1E-10 2.2E-15 117.3 14.7 116 181-310 18-152 (375)
18 PRK08588 succinyl-diaminopimel 99.2 2.3E-10 4.9E-15 114.8 15.4 109 183-310 21-147 (377)
19 PRK07906 hypothetical protein; 99.2 1.4E-10 3E-15 118.5 13.6 114 181-311 22-154 (426)
20 PRK08596 acetylornithine deace 99.2 1.7E-10 3.6E-15 118.2 14.0 111 182-310 34-165 (421)
21 PRK07338 hypothetical protein; 99.2 2.5E-10 5.4E-15 115.5 15.0 120 181-311 37-177 (402)
22 TIGR01893 aa-his-dipept aminoa 99.2 9.3E-11 2E-15 122.2 12.1 105 181-311 21-153 (477)
23 TIGR01892 AcOrn-deacetyl acety 99.2 2.3E-10 5E-15 113.5 14.0 110 184-311 18-144 (364)
24 TIGR01882 peptidase-T peptidas 99.2 1.4E-10 2.9E-15 118.7 12.4 107 179-308 28-186 (410)
25 KOG2526|consensus 99.2 3E-10 6.6E-15 116.4 14.0 142 188-349 165-317 (555)
26 PRK09133 hypothetical protein; 99.2 3.6E-10 7.7E-15 117.4 14.9 115 182-312 57-191 (472)
27 PRK13381 peptidase T; Provisio 99.2 3.1E-10 6.7E-15 115.4 13.9 107 180-309 27-183 (404)
28 PRK13983 diaminopimelate amino 99.2 5E-10 1.1E-14 112.5 14.9 118 182-310 28-165 (400)
29 PRK07473 carboxypeptidase; Pro 99.2 8.6E-10 1.9E-14 111.7 16.0 113 181-310 31-159 (376)
30 PRK13009 succinyl-diaminopimel 99.1 8.6E-10 1.9E-14 110.2 15.6 112 183-313 21-150 (375)
31 PRK04443 acetyl-lysine deacety 99.1 6.2E-10 1.3E-14 111.1 14.0 91 183-291 25-124 (348)
32 PRK07522 acetylornithine deace 99.1 1.2E-09 2.6E-14 109.6 15.5 110 184-312 25-151 (385)
33 TIGR01883 PepT-like peptidase 99.1 7.1E-10 1.5E-14 110.4 13.3 112 182-309 18-145 (361)
34 PRK06446 hypothetical protein; 99.1 8.9E-10 1.9E-14 113.5 14.4 109 182-310 23-149 (436)
35 PRK05111 acetylornithine deace 99.1 8.5E-10 1.8E-14 110.7 13.5 109 183-310 31-156 (383)
36 PRK13013 succinyl-diaminopimel 99.1 1.9E-09 4.1E-14 109.9 16.2 118 182-309 35-170 (427)
37 PRK08651 succinyl-diaminopimel 99.1 1.5E-09 3.2E-14 109.3 14.6 116 181-310 26-158 (394)
38 TIGR01880 Ac-peptdase-euk N-ac 99.1 1.5E-09 3.3E-14 109.9 14.4 111 183-310 30-160 (400)
39 PRK07907 hypothetical protein; 99.1 2.3E-09 4.9E-14 110.8 15.6 108 181-310 41-168 (449)
40 PRK13007 succinyl-diaminopimel 99.1 2E-09 4.4E-14 106.6 13.8 103 183-310 26-140 (352)
41 PF05450 Nicastrin: Nicastrin; 99.0 2.4E-09 5.1E-14 103.3 13.2 110 231-348 1-115 (234)
42 PRK08652 acetylornithine deace 99.0 1.5E-09 3.2E-14 107.1 12.1 104 183-311 21-133 (347)
43 PRK05469 peptidase T; Provisio 99.0 1.9E-09 4.2E-14 109.8 13.1 106 180-308 28-184 (408)
44 TIGR01246 dapE_proteo succinyl 99.0 4.4E-09 9.6E-14 105.2 15.1 111 183-312 18-146 (370)
45 PRK09104 hypothetical protein; 99.0 5E-09 1.1E-13 108.7 15.7 110 182-310 41-175 (464)
46 TIGR01902 dapE-lys-deAc N-acet 99.0 2.7E-09 5.8E-14 105.7 12.2 102 183-311 16-126 (336)
47 PRK08554 peptidase; Reviewed 99.0 9E-09 1.9E-13 106.8 16.4 110 181-312 24-150 (438)
48 COG0624 ArgE Acetylornithine d 99.0 6E-09 1.3E-13 105.9 13.9 115 181-311 31-164 (409)
49 PRK06915 acetylornithine deace 99.0 4.7E-09 1E-13 107.1 13.1 117 182-308 35-179 (422)
50 PRK06837 acetylornithine deace 99.0 7E-09 1.5E-13 106.5 14.2 108 182-291 38-174 (427)
51 PRK08201 hypothetical protein; 99.0 1.1E-08 2.4E-13 105.8 15.7 111 181-310 37-167 (456)
52 PRK07205 hypothetical protein; 99.0 7.7E-09 1.7E-13 106.7 14.2 107 181-309 38-162 (444)
53 PRK07318 dipeptidase PepV; Rev 99.0 5.6E-09 1.2E-13 108.6 12.7 106 181-310 43-165 (466)
54 PRK08262 hypothetical protein; 99.0 5.5E-09 1.2E-13 109.0 12.7 112 182-313 71-204 (486)
55 PRK06156 hypothetical protein; 98.9 1.2E-08 2.7E-13 107.9 14.6 104 183-310 74-201 (520)
56 TIGR01900 dapE-gram_pos succin 98.9 1.3E-08 2.9E-13 102.9 14.2 112 182-310 14-154 (373)
57 PRK07079 hypothetical protein; 98.9 2.1E-08 4.5E-13 104.3 15.9 109 188-311 48-176 (469)
58 PRK13004 peptidase; Reviewed 98.9 1E-08 2.3E-13 104.1 12.9 106 183-310 34-158 (399)
59 TIGR01891 amidohydrolases amid 98.9 1.7E-08 3.7E-13 101.2 14.2 104 182-309 17-135 (363)
60 PRK00466 acetyl-lysine deacety 98.9 7.1E-09 1.5E-13 103.3 11.3 99 182-310 28-135 (346)
61 PRK15026 aminoacyl-histidine d 98.9 1.2E-08 2.6E-13 107.5 13.5 115 183-338 29-171 (485)
62 TIGR01886 dipeptidase dipeptid 98.8 3.5E-08 7.6E-13 103.0 12.6 106 181-310 42-164 (466)
63 TIGR01887 dipeptidaselike dipe 98.8 5.6E-08 1.2E-12 101.2 13.5 106 181-310 31-153 (447)
64 PRK09961 exoaminopeptidase; Pr 98.7 9.8E-08 2.1E-12 96.6 12.7 120 182-341 18-226 (344)
65 TIGR03526 selenium_YgeY putati 98.7 9.8E-08 2.1E-12 96.9 12.5 94 183-291 32-144 (395)
66 PLN02693 IAA-amino acid hydrol 98.7 2.5E-07 5.4E-12 96.3 13.7 105 183-309 66-181 (437)
67 TIGR03320 ygeY M20/DapE family 98.7 1.3E-07 2.7E-12 96.0 10.9 94 183-291 32-144 (395)
68 COG1363 FrvX Cellulase M and r 98.7 3E-07 6.5E-12 93.7 13.1 121 183-343 21-242 (355)
69 PLN02280 IAA-amino acid hydrol 98.6 6.2E-07 1.3E-11 94.5 14.1 107 182-310 115-232 (478)
70 TIGR03107 glu_aminopep glutamy 98.6 6E-07 1.3E-11 91.4 12.5 119 182-340 16-237 (350)
71 COG4882 Predicted aminopeptida 98.6 1.6E-07 3.5E-12 95.1 8.1 101 218-345 178-282 (486)
72 PRK08737 acetylornithine deace 98.5 6.7E-07 1.5E-11 90.6 11.7 98 184-310 30-143 (364)
73 KOG2275|consensus 98.4 3.7E-06 8.1E-11 86.6 12.9 108 185-309 49-176 (420)
74 PRK09864 putative peptidase; P 98.4 3.5E-06 7.5E-11 86.1 12.1 113 183-338 19-230 (356)
75 PF01546 Peptidase_M20: Peptid 98.3 2.8E-06 6.1E-11 76.1 8.7 104 234-362 1-121 (189)
76 TIGR03106 trio_M42_hydro hydro 98.1 1.8E-05 4E-10 80.3 11.6 51 182-244 21-72 (343)
77 PF05343 Peptidase_M42: M42 gl 97.7 0.00011 2.4E-09 73.1 7.4 49 251-311 132-180 (292)
78 COG4187 RocB Arginine degradat 97.7 0.00027 5.9E-09 73.7 10.4 138 180-340 26-209 (553)
79 PF09940 DUF2172: Domain of un 97.7 0.00042 9.1E-09 71.2 11.5 166 128-343 40-210 (386)
80 KOG2276|consensus 97.5 0.0012 2.6E-08 68.4 12.3 131 181-337 39-196 (473)
81 COG1473 AbgB Metal-dependent a 96.8 0.028 6E-07 58.5 14.2 121 183-337 31-164 (392)
82 KOG2657|consensus 95.9 0.035 7.7E-07 59.2 9.3 139 215-367 154-311 (596)
83 PF04114 Gaa1: Gaa1-like, GPI 94.3 0.34 7.4E-06 52.1 11.0 107 218-345 3-114 (504)
84 KOG3566|consensus 94.1 0.27 5.9E-06 53.3 9.6 102 188-313 92-196 (617)
85 COG4310 Uncharacterized protei 93.8 0.44 9.6E-06 48.6 9.8 112 193-343 147-258 (435)
86 COG2195 PepD Di- and tripeptid 90.0 0.63 1.4E-05 49.0 6.2 113 183-308 24-190 (414)
87 PRK02256 putative aminopeptida 86.1 1 2.3E-05 48.0 5.0 37 249-291 256-292 (462)
88 PTZ00371 aspartyl aminopeptida 71.5 4.2 9.1E-05 43.4 3.8 40 250-291 248-288 (465)
89 PRK02813 putative aminopeptida 71.3 5.5 0.00012 42.1 4.6 35 250-291 231-265 (428)
90 COG4635 HemG Flavodoxin [Energ 42.7 27 0.00058 32.8 3.3 24 182-205 13-36 (175)
91 PF08854 DUF1824: Domain of un 40.0 46 0.00099 29.7 4.3 60 183-242 47-110 (125)
92 COG4917 EutP Ethanolamine util 36.6 25 0.00054 32.0 2.1 27 104-131 105-131 (148)
93 cd04516 TBP_eukaryotes eukaryo 35.2 52 0.0011 30.7 4.1 39 179-227 65-103 (174)
94 PLN00062 TATA-box-binding prot 33.2 59 0.0013 30.5 4.1 39 179-227 65-103 (179)
95 PTZ00371 aspartyl aminopeptida 28.7 1.2E+02 0.0026 32.5 6.1 60 183-244 22-92 (465)
96 PRK02813 putative aminopeptida 28.1 1.3E+02 0.0028 31.9 6.1 60 183-244 21-90 (428)
97 cd00652 TBP_TLF TATA box bindi 21.4 1.4E+02 0.003 27.8 4.3 39 178-226 64-103 (174)
No 1
>KOG3946|consensus
Probab=100.00 E-value=1.8e-61 Score=465.81 Aligned_cols=278 Identities=44% Similarity=0.715 Sum_probs=252.1
Q ss_pred cchhhhhhhcccCc-ceeeeeccc-ccCCCCCHHHHHHHhccCChhhHHhhccCcceeccCCCCchhhhhhhhcCCCCCC
Q psy15910 7 VLDPILVERGVGSE-NHEVVKNSQ-HSARTLTDEEIDEITSRVDMAEFNTVLDPILVERGVGSENHEVVKNLMGRGQGGN 84 (404)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 84 (404)
++-|++.+++.||. .+.....+. +.|..|++..++++...+|..++.+.|+||||+|+|||+||.+||
T Consensus 6 ~ll~L~~~la~gs~~~~~~~~~~~~~~p~~l~~~~lr~i~~~s~~~~~~~~L~p~lv~Rvpgs~g~~~vr---------- 75 (338)
T KOG3946|consen 6 VLLPLLATLAWGSVLFQVHRVGWWLELPSELAESRLRAINPDSDWNRLWENLLPILVPRVPGSPGSRQVR---------- 75 (338)
T ss_pred HHHHHHHHHHHhhheeeeeeecccccCcccccHHHHHHhcCCCCHHHHHHhhhhhhccccCCCCccHHHH----------
Confidence 56788999999994 444444444 888999999999999999999977779999999999999999888
Q ss_pred CCCCCCccccccccCCCCccchhhhhhccCCCCCCCcceeEEecccccccCCCCCCccccccchHHHHHHHhcCCCcccc
Q psy15910 85 RFGNEPDLFRIKFTPGGNRTRDLALTRQTLPTYAGSCTSFVISDVNVLHCIPYPFPSVRTFLNRDFFNERINGGFPKVLI 164 (404)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~i~~~~~~~~~~~~~p~~~~~in~~~~~~~l~~~~~~~~~ 164 (404)
T Consensus 76 -------------------------------------------------------------------------------- 75 (338)
T KOG3946|consen 76 -------------------------------------------------------------------------------- 75 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeccccccccccChHhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCC
Q psy15910 165 EGIISDNKSALDMNTIENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIM 244 (404)
Q Consensus 165 ~gi~r~~~s~~~~~~~~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~ 244 (404)
+||.+.|+++||.||.|.|+..+| .|.+.|.|||+++++.+++++|++|||||+++
T Consensus 76 -----------------------~~i~~~l~~l~w~ve~~~f~~~tp-~g~~~f~nii~tl~~~A~r~lVlachydsk~~ 131 (338)
T KOG3946|consen 76 -----------------------RFIIQHLRNLGWAVETDAFTDNTP-LGTRNFNNLIATLDPNASRYLVLACHYDSKIF 131 (338)
T ss_pred -----------------------HHHHHHHHhcCceeeeccccccCc-ceeeeeeeEEEecCCCcchheeeecccccccC
Confidence 899999999999999999999999 59999999999999999999999999999999
Q ss_pred CCC-CCCCCCCchHHHHHHHHHHHHHHHhhc--CCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHhhhccccCc
Q psy15910 245 ASP-FIGATDSAVPCAMLLYIARLMRQELSQ--LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGK 321 (404)
Q Consensus 245 ~d~-f~GA~D~AsGvA~LLElAr~L~~~l~~--~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~~~~p~~~~ 321 (404)
+.+ |.||+|+|++|||||++|+++.+.+.. ..++.++++|||||||+|++|+++||+|||||+|++|.+-+++. ..
T Consensus 132 p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~~~sw~~~~-~r 210 (338)
T KOG3946|consen 132 PGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAKWESWPHSG-IR 210 (338)
T ss_pred CCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHHHhccCCCC-Cc
Confidence 765 899999999999999999999987642 35778999999999999999999999999999999998844433 24
Q ss_pred cccccCCccEEEEeccCCCCCCcceecCCCcHHHHHHHHHHHHHHHHcCCCcccccCCccccccccccCCCCCCCCCCCC
Q psy15910 322 TLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGIESRLTARGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLP 401 (404)
Q Consensus 322 ~~~~l~~I~~~IlLDmIG~~~p~f~~~~~~T~~~~~~l~~iE~rL~~~glL~~~~~~~~~~~~yF~~~~~~g~I~DDHiP 401 (404)
....+++|+.++++|++|+++|.|+++|++|..||.|+++||.+|+++|+|.++.. +..||+++...+.|+|||||
T Consensus 211 ~~~~ld~idl~vLldllga~~p~f~~~~~~t~~wF~Rl~~iE~~l~~~g~l~s~r~----~~~~Fq~~~~~~~veDDHiP 286 (338)
T KOG3946|consen 211 GDLLLDGIDLLVLLDLLGAPNPTFYNFFPNTDRWFHRLQSIEGELALLGLLASHRL----PPRYFQPGGLSSVVEDDHIP 286 (338)
T ss_pred cccccccchHhhhHHHhcCCChhHhhcCcchHHHHHHHHHHHHHHHHHHHHHhccC----CchhccccCccccccCCcch
Confidence 45689999999999999999999999999999999999999999999999998874 56899999888999999999
Q ss_pred cC
Q psy15910 402 FY 403 (404)
Q Consensus 402 Fl 403 (404)
|+
T Consensus 287 Fl 288 (338)
T KOG3946|consen 287 FL 288 (338)
T ss_pred hh
Confidence 97
No 2
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.94 E-value=2.5e-25 Score=223.59 Aligned_cols=151 Identities=19% Similarity=0.288 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCccCC--------CCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC-------
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDTVPN--------FGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS------- 246 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~--------~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d------- 246 (404)
+++++++||+++|+++|++++.+.|....+. ....+..||||+++|+.++.|+++|||||++...
T Consensus 53 ~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~~~~Ill~AH~DTV~p~~~~~~~~~ 132 (346)
T PRK10199 53 AEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPQSDADVDAN 132 (346)
T ss_pred HHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCCCCeEEEEEEcCcCCCCCCCccccC
Confidence 3455679999999999999999888743320 1234578999999988788999999999996311
Q ss_pred ----CCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHhhhccccCcc
Q psy15910 247 ----PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKT 322 (404)
Q Consensus 247 ----~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~~~~p~~~~~ 322 (404)
..+||+|+++|||+|||+||.|++ .+++++|.|++|++||. ++.||++|++.+..
T Consensus 133 ~~g~~~~GA~DnasGvA~lLe~ar~l~~----~~~~~~I~fv~~~~EE~--------Gl~GS~~~~~~~~~--------- 191 (346)
T PRK10199 133 LGGLTLQGMDDNAAGLGVMLELAERLKN----VPTEYGIRFVATSGEEE--------GKLGAENLLKRMSD--------- 191 (346)
T ss_pred CCCcccCCccccHHHHHHHHHHHHHHhh----CCCCCcEEEEEECCccc--------CcHHHHHHHHhcCc---------
Confidence 147999999999999999999986 35778999999999998 89999999987532
Q ss_pred ccccCCccEEEEeccCCCCCCcceecCCCcHH
Q psy15910 323 LTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHK 354 (404)
Q Consensus 323 ~~~l~~I~~~IlLDmIG~~~p~f~~~~~~T~~ 354 (404)
.+++++.++|||||++..+..+.....++..
T Consensus 192 -~~~~~~~~~iNlD~~~~~d~~~~~~g~~~~~ 222 (346)
T PRK10199 192 -TEKKNTLLVINLDNLIVGDKLYFNSGVNTPE 222 (346)
T ss_pred -cchhcEEEEEEeccCCCCCceEEecCCCcHH
Confidence 2567899999999999876555444444443
No 3
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.86 E-value=5.1e-22 Score=179.10 Aligned_cols=100 Identities=31% Similarity=0.495 Sum_probs=79.9
Q ss_pred ceEEEEEecCCcCC-CC--CCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHH
Q psy15910 231 RALSLACHYDSKIM-AS--PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHL 307 (404)
Q Consensus 231 ~~IVLgAHYDSv~~-~d--~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~l 307 (404)
++|||+|||||++. .+ .++||+|||+|||+|||+||.|++.. .+++++|+||||++||. +++||++|
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~--~~~~~~i~fv~~~~EE~--------gl~GS~~~ 70 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELK--PQPKRTIRFVFFDGEEQ--------GLLGSRAF 70 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHST--HSSSEEEEEEEESSGGG--------TSHHHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhh--cccCccEEEEEeccccc--------CccchHHH
Confidence 47999999999861 11 38899999999999999999999842 46789999999999997 89999999
Q ss_pred HHHHHhhhccccCccccccCCccEEEEeccCCCCCCcceecCCC
Q psy15910 308 AAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPP 351 (404)
Q Consensus 308 a~~~~~~~~p~~~~~~~~l~~I~~~IlLDmIG~~~p~f~~~~~~ 351 (404)
+++.. ..++++.++|||||+|..++.+......
T Consensus 71 ~~~~~-----------~~~~~~~~~inlD~~g~~~~~~~~~~~~ 103 (179)
T PF04389_consen 71 VEHDH-----------EELDNIAAVINLDMIGSGDPTVYSEGSP 103 (179)
T ss_dssp HHHHH-----------CHHHHEEEEEEECSSBSSSSEEEEEEGG
T ss_pred HHhhh-----------cccccceeEEeccccccCcccceeeeec
Confidence 98421 2467899999999999998877665433
No 4
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.83 E-value=6.3e-20 Score=187.50 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=116.9
Q ss_pred HHHHHHHh--cCCCcccccceeccccccccccChHhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeC
Q psy15910 149 DFFNERIN--GGFPKVLIEGIISDNKSALDMNTIENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVN 226 (404)
Q Consensus 149 ~~~~~~l~--~~~~~~~~~gi~r~~~s~~~~~~~~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~ 226 (404)
+|+++++. +.++..+.+|++|.+|| +++.+|++||+++|+++|++|++|. .+||||+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s-------~~~~~a~~~~~~~~~~~Gl~v~~D~------------~gN~~~~~~ 63 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYS-------PEWLAAQQQFKKRMAESGLETRFDD------------VGNLYGRLV 63 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCC-------HHHHHHHHHHHHHHHHcCCEEEEcC------------CCcEEEEec
Confidence 57788888 36766667899999999 7889999999999999999999998 689999999
Q ss_pred CCC--CceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc--ccccCCCCCch
Q psy15910 227 PTA--PRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIW 302 (404)
Q Consensus 227 g~a--~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~--F~~W~~~DgL~ 302 (404)
|.. .+.|+++||+||||. + |..|++.||++.||++|.|++.. ..++++|.+|+|.+||+ |+. +++
T Consensus 64 g~~~~~~~i~~gsHlDtv~~--g--G~~dg~~Gv~~~le~~~~l~~~~--~~~~~~i~vi~~~~EEg~rf~~-----~~~ 132 (406)
T TIGR03176 64 GTEFPEETILTGSHIDTVVN--G--GNLDGQFGALAAWLAVDYLKEKY--GAPLRTVEVLSMAEEEGSRFPY-----VFW 132 (406)
T ss_pred CCCCCCCeEEEeccccCCCC--C--CccCchhhHHHHHHHHHHHHHcC--CCCCCCeEEEEeccccCccCCc-----ccc
Confidence 864 378999999999987 4 99999999999999999999863 67999999999999997 654 799
Q ss_pred hhHHHHH
Q psy15910 303 GARHLAA 309 (404)
Q Consensus 303 GSr~la~ 309 (404)
||+++++
T Consensus 133 Gs~~~~g 139 (406)
T TIGR03176 133 GSKNIFG 139 (406)
T ss_pred cHHHHhC
Confidence 9999996
No 5
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.72 E-value=3.5e-17 Score=175.16 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=114.6
Q ss_pred hHHHHHHHhc--CCC---cccccceeccccccccccChHhHHHHHHHHHHHHHhCCCe-EEEEcccCccCCCCCceeeEE
Q psy15910 148 RDFFNERING--GFP---KVLIEGIISDNKSALDMNTIENLLKIFQYIISELKSSGLD-VETDTFSDTVPNFGRLTFTNI 221 (404)
Q Consensus 148 ~~~~~~~l~~--~~~---~~~~~gi~r~~~s~~~~~~~~~~~~a~~yI~~~L~~lG~~-Ve~d~F~~~tp~~G~~~~~NI 221 (404)
.+++++++.. .++ ..+.+|++|.+|| +++.++++||.++|+++|++ |++|. .+||
T Consensus 180 ~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s-------~~~~~~~~~~~~~~~~~Gl~~v~~D~------------~gNv 240 (591)
T PRK13799 180 GADVMDWAEDIAAHSDPGYADEGALTCTYLS-------DAHRACANQISDWMRDAGFDEVEIDA------------VGNV 240 (591)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCceEeeeCC-------HHHHHHHHHHHHHHHHcCCCeEeECC------------CCCE
Confidence 5677777773 554 3345799999999 78899999999999999998 99998 6999
Q ss_pred EEEeCCC--CCceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc--ccccCC
Q psy15910 222 IGHVNPT--APRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSA 297 (404)
Q Consensus 222 Ia~l~g~--a~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~--F~~W~~ 297 (404)
+|+++|. ..+.|++++|+|||+. + |..|+..||+++||+++.|++.. .+++++|.||+|.+||+ |+.
T Consensus 241 ~~~~~g~~~~~p~v~~gSHlDTV~~--g--G~~DG~~Gv~a~l~~~~~l~~~~--~~~~~~i~vi~~~~EEg~rF~~--- 311 (591)
T PRK13799 241 VGRYKAADDDAKTLITGSHYDTVRN--G--GKYDGREGIFLAIACVKELHEQG--ERLPFHFEVIAFAEEEGQRFKA--- 311 (591)
T ss_pred EEEcCCCCCCCCeEEEeccccccCC--C--CccccHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEecCCCccCCCc---
Confidence 9999875 3578999999999986 4 99999999999999999999863 67889999999999997 665
Q ss_pred CCCchhhHHHHH
Q psy15910 298 EDSIWGARHLAA 309 (404)
Q Consensus 298 ~DgL~GSr~la~ 309 (404)
++.||+++++
T Consensus 312 --~~~GS~~~~G 321 (591)
T PRK13799 312 --TFLGSGALIG 321 (591)
T ss_pred --cccchHHHhC
Confidence 8999999984
No 6
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.72 E-value=5.1e-17 Score=173.91 Aligned_cols=133 Identities=16% Similarity=0.220 Sum_probs=112.0
Q ss_pred hHHHHHHHhc--CCCcc---cccceeccccccccccChHhHHHHHHHHHHHHHhCCC-eEEEEcccCccCCCCCceeeEE
Q psy15910 148 RDFFNERING--GFPKV---LIEGIISDNKSALDMNTIENLLKIFQYIISELKSSGL-DVETDTFSDTVPNFGRLTFTNI 221 (404)
Q Consensus 148 ~~~~~~~l~~--~~~~~---~~~gi~r~~~s~~~~~~~~~~~~a~~yI~~~L~~lG~-~Ve~d~F~~~tp~~G~~~~~NI 221 (404)
.+++++++.. .+... +.+|++|.+|| +++.++++||.++|+++|+ +|++|. .+||
T Consensus 180 ~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s-------~~~~~~~~~l~~~~~~~Gl~~v~~D~------------~GNl 240 (591)
T PRK13590 180 GNDVWDWAERLAAHSDPGYAEKGQLTVTYLT-------DAHRACAQQISHWMRDCGFDEVHIDA------------VGNV 240 (591)
T ss_pred HHHHHHHHHHHhcccCCCCCCCCceeeeeCC-------HHHHHHHHHHHHHHHHcCCCeeeECC------------CCCE
Confidence 4667777773 54331 34799999999 7889999999999999999 999987 6999
Q ss_pred EEEeCCCC--CceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc--ccccCC
Q psy15910 222 IGHVNPTA--PRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSA 297 (404)
Q Consensus 222 Ia~l~g~a--~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~--F~~W~~ 297 (404)
||+++|.. .+.|++++|+|||+. + |..|+.+||+++||++|.|++.. ..++++|.||+|.+||+ |+.
T Consensus 241 ~~~~~g~~~~~~~v~~gsHlDTV~~--g--G~~DG~~Gv~a~lea~~~l~~~~--~~~~~~i~vv~~~~EEg~rF~~--- 311 (591)
T PRK13590 241 VGRYKGSTPQAKRLLTGSHYDTVRN--G--GKYDGRLGIFVPMACVRELHRQG--RRLPFGLEVVGFAEEEGQRYKA--- 311 (591)
T ss_pred EEEecCCCCCCCeEEEecccccCCC--C--CCcccHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEecCCccccCCc---
Confidence 99998753 368999999999986 3 88999999999999999999862 46678999999999996 655
Q ss_pred CCCchhhHHHHHH
Q psy15910 298 EDSIWGARHLAAK 310 (404)
Q Consensus 298 ~DgL~GSr~la~~ 310 (404)
+++||+++++.
T Consensus 312 --~~~GS~~~~G~ 322 (591)
T PRK13590 312 --TFLGSGALIGD 322 (591)
T ss_pred --cccchHHHhCC
Confidence 79999987653
No 7
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.69 E-value=3.2e-16 Score=159.15 Aligned_cols=131 Identities=17% Similarity=0.241 Sum_probs=109.9
Q ss_pred HHHHHHhc--CCCcccccceeccccccccccChHhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCC
Q psy15910 150 FFNERING--GFPKVLIEGIISDNKSALDMNTIENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNP 227 (404)
Q Consensus 150 ~~~~~l~~--~~~~~~~~gi~r~~~s~~~~~~~~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g 227 (404)
++++++.. .++..+.+|++|..+| +++.++++||+++|+++|++++.|. ..||||++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~r~~~~-------~~e~~~~~~l~~~~~~~G~~~~~~~------------~~nl~a~~~g 62 (401)
T TIGR01879 2 RLWETLMWLGEVGADPAGGMTRLALS-------PEDREAQDLFKKRMRAAGLEVRFDE------------VGNLIGRKEG 62 (401)
T ss_pred hHHHHHHHHhcccCCCCCceEeCCCC-------HHHHHHHHHHHHHHHHCCCEEEEec------------CCcEEEEecC
Confidence 45566663 5544556799999998 6889999999999999999999876 4799999986
Q ss_pred CC--CceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc--ccccCCCCCchh
Q psy15910 228 TA--PRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDSIWG 303 (404)
Q Consensus 228 ~a--~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~--F~~W~~~DgL~G 303 (404)
.. .+.|++++|+||||. + |..|+..|||++|++++.|++.. ..++.+|.|++|.+||. |+. +++|
T Consensus 63 ~~~~~~~l~~~~H~DtV~~--g--g~~dg~~gvaa~l~a~~~l~~~g--~~~~~~i~~~~~~dEE~~~f~~-----~~~G 131 (401)
T TIGR01879 63 TEPPLEVVLSGSHIDTVVN--G--GNFDGQLGVLAGIEVVDALKEAY--VVPLHPIEVVAFTEEEGSRFPY-----GMWG 131 (401)
T ss_pred CCCCCCEEEEecccccCCC--C--CccCCHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCcCcCccc-----cccc
Confidence 54 378999999999986 3 88899999999999999998862 46889999999999995 544 7899
Q ss_pred hHHHHHH
Q psy15910 304 ARHLAAK 310 (404)
Q Consensus 304 Sr~la~~ 310 (404)
|+++++.
T Consensus 132 s~~~~~~ 138 (401)
T TIGR01879 132 SRNMVGL 138 (401)
T ss_pred HHHHhcc
Confidence 9999863
No 8
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.67 E-value=6.3e-16 Score=157.83 Aligned_cols=133 Identities=14% Similarity=0.171 Sum_probs=112.5
Q ss_pred chHHHHHHHhc--CCCcccccceeccccccccccChHhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEE
Q psy15910 147 NRDFFNERING--GFPKVLIEGIISDNKSALDMNTIENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGH 224 (404)
Q Consensus 147 n~~~~~~~l~~--~~~~~~~~gi~r~~~s~~~~~~~~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~ 224 (404)
+..+++++++. .++..+.+|++|.+++ +++.++++||+++|+++|++|+.+. ..|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~~r~~~~-------~~e~~~~~~l~~~l~~~G~~v~~~~------------~gNl~a~ 68 (414)
T PRK12891 8 DGERLWASLERMAQIGATPKGGVCRLALT-------DGDREARDLFVAWARDAGCTVRVDA------------MGNLFAR 68 (414)
T ss_pred CHHHHHHHHHHHHhccCCCCCceeeccCC-------HHHHHHHHHHHHHHHHCCCEEEECC------------CCCEEEE
Confidence 34688898883 6666667899999999 7889999999999999999999975 4699999
Q ss_pred eCCCC--CceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc--ccccCCCCC
Q psy15910 225 VNPTA--PRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDS 300 (404)
Q Consensus 225 l~g~a--~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~--F~~W~~~Dg 300 (404)
+++.. .+.|++++|+||||.. |..|+.+||+++|++++.|++.. ..++.+|.|+++.+||. |+. +
T Consensus 69 ~~g~~~~~~~l~~~~H~DtVp~g----g~~D~k~Gv~a~l~a~~~l~~~~--~~~~~~i~v~~~~dEE~~~f~~-----~ 137 (414)
T PRK12891 69 RAGRDPDAAPVMTGSHADSQPTG----GRYDGIYGVLGGLEVVRALNDAG--IETERPVDVVIWTNEEGSRFAP-----S 137 (414)
T ss_pred ecCCCCCCCeEEEEecccCCCCC----ccccchhhHHHHHHHHHHHHHcC--CCCCCCeEEEEecccccCcCCc-----c
Confidence 98753 3789999999999862 78899999999999999999752 56788999999999996 433 5
Q ss_pred chhhHHHHH
Q psy15910 301 IWGARHLAA 309 (404)
Q Consensus 301 L~GSr~la~ 309 (404)
+.||++++.
T Consensus 138 ~~Gs~~~~g 146 (414)
T PRK12891 138 MVGSGVFFG 146 (414)
T ss_pred cccHHHHhC
Confidence 789998864
No 9
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.64 E-value=8.5e-16 Score=156.96 Aligned_cols=103 Identities=24% Similarity=0.363 Sum_probs=85.1
Q ss_pred CceeeEEEEEeCCC------------CCceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEE
Q psy15910 215 RLTFTNIIGHVNPT------------APRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLD 282 (404)
Q Consensus 215 ~~~~~NIIa~l~g~------------a~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~ 282 (404)
..+..|+++++.++ .+..+++++|+||++. .+||+|||+|+|++||+||.|+.. +++++|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~---~~GA~DNasGva~llEiAr~l~~~----~p~~~v~ 253 (435)
T COG2234 181 GLTSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPT---GPGADDNASGVAALLELARVLKGN----PPKRTVR 253 (435)
T ss_pred ceEEEEEeeeeecccccceEEEeccCCCceeeecccccCCcC---CCCcccccHHHHHHHHHHHHHhcC----CCCceEE
Confidence 34556666666543 3568888999999765 689999999999999999999984 6999999
Q ss_pred EEEecCcccccccCCCCCchhhHHHHHHHHhhhccccCccccccCCccEEEEeccCCCCC
Q psy15910 283 LIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSN 342 (404)
Q Consensus 283 fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~~~~p~~~~~~~~l~~I~~~IlLDmIG~~~ 342 (404)
|++|++||. ++.||++|+.+.... ....+.++||+||+|.++
T Consensus 254 f~~~~aEE~--------Gl~GS~~~~~~~~~~----------~~~~~~~viN~Dm~g~~~ 295 (435)
T COG2234 254 FVAFGAEES--------GLLGSEAYVKRLSKD----------LDKKIALVINLDMLGSPN 295 (435)
T ss_pred EEEecchhh--------cccccHHHHhcCCcc----------hhhhhheEEecccccCCC
Confidence 999999998 899999999875431 356788899999999986
No 10
>KOG2194|consensus
Probab=99.63 E-value=2.5e-15 Score=163.72 Aligned_cols=172 Identities=19% Similarity=0.298 Sum_probs=122.6
Q ss_pred cChHhHHHHHHHHHHHHHhCC---------CeEEEEcccCccC----CCCCceeeEEEEEeCCCC---CceEEEEEecCC
Q psy15910 178 NTIENLLKIFQYIISELKSSG---------LDVETDTFSDTVP----NFGRLTFTNIIGHVNPTA---PRALSLACHYDS 241 (404)
Q Consensus 178 ~~~~~~~~a~~yI~~~L~~lG---------~~Ve~d~F~~~tp----~~G~~~~~NIIa~l~g~a---~~~IVLgAHYDS 241 (404)
.+..++..+++||.+++.+.. .++..+......- ..-.....||+.++.|+. +..|++.|||||
T Consensus 75 gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVki~~k~~~~~~~lLlnaHfDS 154 (834)
T KOG2194|consen 75 GSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVKISPKNGNDKNALLLNAHFDS 154 (834)
T ss_pred CchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEecCCCCCCccceeeeeccccc
Confidence 344677899999999997752 2333333221110 011356889999998763 348999999999
Q ss_pred cCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHH--HHHhhhcccc
Q psy15910 242 KIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA--KWERSHLQHR 319 (404)
Q Consensus 242 v~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~--~~~~~~~p~~ 319 (404)
+|. .+||+|++++||+|||++|.+.+.. +..+++|.|.|+++||. ++.||+.|+. +|++
T Consensus 155 vpt---~~gAtDDg~~va~mLe~lRv~s~~~--~~l~~~vVFLfNgaEE~--------~L~gsH~FItQH~w~~------ 215 (834)
T KOG2194|consen 155 VPT---GPGATDDGSGVASMLEALRVLSKSD--KLLTHSVVFLFNGAEES--------GLLGSHAFITQHPWSK------ 215 (834)
T ss_pred cCC---CCCCCcchhHHHHHHHHHHHhhcCC--CcccccEEEEecCcccc--------hhhhcccceecChhhh------
Confidence 986 6899999999999999999999752 34589999999999997 8999999997 6654
Q ss_pred CccccccCCccEEEEeccCCCCCCcceecCCCcHHHHHHH---------HHHHHHHHHcCCCcccc
Q psy15910 320 GKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQL---------VGIESRLTARGLLNMVN 376 (404)
Q Consensus 320 ~~~~~~l~~I~~~IlLDmIG~~~p~f~~~~~~T~~~~~~l---------~~iE~rL~~~glL~~~~ 376 (404)
+++++||||..|+.+..+.-.....+|..+.. .-+.+++.+.|++++..
T Consensus 216 --------~~ka~INLea~GsGGreiLFQagp~~wl~k~Y~~~~phPf~stlgee~Fq~g~IpSdT 273 (834)
T KOG2194|consen 216 --------NIKAVINLEAAGSGGREILFQAGPNHWLLKAYLQAAPHPFASTLGEELFQSGIIPSDT 273 (834)
T ss_pred --------hhheEEeccccCcccceeEEecCCchHHHHHHHhhCCCchhhhhHHHhhhcCcCcccc
Confidence 59999999999997654322222222111100 12456678888876644
No 11
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.55 E-value=6.3e-14 Score=142.72 Aligned_cols=135 Identities=21% Similarity=0.257 Sum_probs=109.3
Q ss_pred chHHHHHHHhc--CCCcccccceeccccccccccChHhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEE
Q psy15910 147 NRDFFNERING--GFPKVLIEGIISDNKSALDMNTIENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGH 224 (404)
Q Consensus 147 n~~~~~~~l~~--~~~~~~~~gi~r~~~s~~~~~~~~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~ 224 (404)
+..++++++.. +++... ++++|...+ +++.++++||.++|+++|++++.+. ..|+||+
T Consensus 7 ~~~~~~~~~~~~~~i~~~~-~~~~~~s~~-------~~e~~~~~~l~~~l~~~G~~~~~~~------------~~nlia~ 66 (414)
T PRK12890 7 NGERLLARLEELAAIGRDG-PGWTRLALS-------DEERAARALLAAWMRAAGLEVRRDA------------AGNLFGR 66 (414)
T ss_pred CHHHHHHHHHHHhccCCCC-CceeeccCC-------HHHHHHHHHHHHHHHHCCCEEEEcC------------CCcEEEE
Confidence 35678888774 555433 788888887 6789999999999999999998764 4699999
Q ss_pred eCCC--CCceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc--ccccCCCCC
Q psy15910 225 VNPT--APRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAEDS 300 (404)
Q Consensus 225 l~g~--a~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~--F~~W~~~Dg 300 (404)
+++. ..+.|++++|||+||. + |+.|+.+|+|++|++++.|.+.. ..++.+|.|+++.+||. |+. +
T Consensus 67 ~~g~~~~~~~l~~~~H~DtVp~--~--g~~D~~~g~aa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~~~~~~-----~ 135 (414)
T PRK12890 67 LPGRDPDLPPLMTGSHLDTVPN--G--GRYDGILGVLAGLEVVAALREAG--IRPPHPLEVIAFTNEEGVRFGP-----S 135 (414)
T ss_pred eCCCCCCCCEEEEeCcccCCCC--C--CCcCCHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEEecccccccCC-----c
Confidence 9765 3468999999999986 2 78999999999999999998752 35688999999999995 322 5
Q ss_pred chhhHHHHHHHH
Q psy15910 301 IWGARHLAAKWE 312 (404)
Q Consensus 301 L~GSr~la~~~~ 312 (404)
++||+++++.+.
T Consensus 136 ~~G~~~~~~~~~ 147 (414)
T PRK12890 136 MIGSRALAGTLD 147 (414)
T ss_pred cccHHHHHcccC
Confidence 789999977544
No 12
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.53 E-value=1.3e-13 Score=139.87 Aligned_cols=136 Identities=20% Similarity=0.264 Sum_probs=109.4
Q ss_pred cccchHHHHHHHhc--CCCcccccceeccccccccccChHhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEE
Q psy15910 144 TFLNRDFFNERING--GFPKVLIEGIISDNKSALDMNTIENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNI 221 (404)
Q Consensus 144 ~~in~~~~~~~l~~--~~~~~~~~gi~r~~~s~~~~~~~~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NI 221 (404)
+.++.+++++.+.. .+.. ..+|++|..++ +++.++++||.++|+++|++++.+. ..|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~s-~~~g~~~~s~~-------~~e~~~~~~l~~~l~~~G~~~~~~~------------~~nl 64 (412)
T PRK12892 5 LRIDGQRVLDDLMELAAIGA-AKTGVHRPTYS-------DAHVAARRRLAAWCEAAGLAVRIDG------------IGNV 64 (412)
T ss_pred ccccHHHHHHHHHHHHccCC-CCCCeeeCCCC-------HHHHHHHHHHHHHHHHcCCEEEEcC------------CCcE
Confidence 44566677777774 4444 34799999887 5678999999999999999998754 4699
Q ss_pred EEEeCCCC-CceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc--ccccCCC
Q psy15910 222 IGHVNPTA-PRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSAE 298 (404)
Q Consensus 222 Ia~l~g~a-~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~--F~~W~~~ 298 (404)
++++++.. .+.|++++|+||||.. |..|+..|+|++|++++.|++.. ..++.+|.|+++.+||. |+.
T Consensus 65 ~a~~~g~~~~~~l~l~gH~DtVp~~----g~~dg~~Gvaa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~~~~~~---- 134 (412)
T PRK12892 65 FGRLPGPGPGPALLVGSHLDSQNLG----GRYDGALGVVAGLEAARALNEHG--IATRHPLDVVAWCDEEGSRFTP---- 134 (412)
T ss_pred EEEecCCCCCCeEEEEccccCCCCC----CcccchHHHHHHHHHHHHHHHcC--CCCCCCeEEEEecCcccccccC----
Confidence 99997643 3689999999999862 77899999999999999998752 45788999999999996 332
Q ss_pred CCchhhHHHHHH
Q psy15910 299 DSIWGARHLAAK 310 (404)
Q Consensus 299 DgL~GSr~la~~ 310 (404)
++.||++++++
T Consensus 135 -~~~Gs~~~~~~ 145 (412)
T PRK12892 135 -GFLGSRAYAGR 145 (412)
T ss_pred -ccccHHHHHcC
Confidence 57899999854
No 13
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.42 E-value=2.1e-12 Score=131.64 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=107.1
Q ss_pred ccccchHHHHHHHhc--CCCcccccceeccccccccccChHhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeE
Q psy15910 143 RTFLNRDFFNERING--GFPKVLIEGIISDNKSALDMNTIENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTN 220 (404)
Q Consensus 143 ~~~in~~~~~~~l~~--~~~~~~~~gi~r~~~s~~~~~~~~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~N 220 (404)
|+.|+.+++.+.+.. .++....+|+.|...| .++.++++||.++|+++|++++.+. ..|
T Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s-------~~e~~~a~~l~~~l~~~g~~~~~~~------------~~n 61 (413)
T PRK09290 1 MLRIDAERLWARLDELAKIGATPDGGVTRLALS-------PEDLQARDLFAEWMEAAGLTVRVDA------------VGN 61 (413)
T ss_pred CCCcCHHHHHHHHHHHhcccCCCCCceeeccCC-------HHHHHHHHHHHHHHHHcCCEEEEcC------------CCc
Confidence 345666776666664 4434444778777776 5678999999999999999998753 369
Q ss_pred EEEEeCCCC--CceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCC
Q psy15910 221 IIGHVNPTA--PRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAE 298 (404)
Q Consensus 221 IIa~l~g~a--~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~ 298 (404)
|||++.+.. .+.|+|.+|+||||.. |..|+..|+|++|.+++.|++.. ..++.+|.|+|+.+||.- .++
T Consensus 62 l~a~~~g~~~~~~~l~l~gH~DtVp~~----g~~d~k~g~aa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~g-~~g-- 132 (413)
T PRK09290 62 LFGRLEGRDPDAPAVLTGSHLDTVPNG----GRFDGPLGVLAGLEAVRTLNERG--IRPRRPIEVVAFTNEEGS-RFG-- 132 (413)
T ss_pred EEEEecCCCCCCCEEEEecCccCCCCC----CCcCCHHHHHHHHHHHHHHHHcC--CCCCCCeEEEEEcCCccc-ccc--
Confidence 999997642 4689999999999862 67899999999999999998752 346789999999999951 011
Q ss_pred CCchhhHHHHHH
Q psy15910 299 DSIWGARHLAAK 310 (404)
Q Consensus 299 DgL~GSr~la~~ 310 (404)
.++.||+++++.
T Consensus 133 ~~~~G~~~~~~~ 144 (413)
T PRK09290 133 PAMLGSRVFTGA 144 (413)
T ss_pred CccccHHHHHcc
Confidence 145699988754
No 14
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.42 E-value=2.4e-12 Score=130.75 Aligned_cols=137 Identities=15% Similarity=0.229 Sum_probs=106.2
Q ss_pred cccchHHHHHHHhc--CCCcccccceeccccccccccChHhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEE
Q psy15910 144 TFLNRDFFNERING--GFPKVLIEGIISDNKSALDMNTIENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNI 221 (404)
Q Consensus 144 ~~in~~~~~~~l~~--~~~~~~~~gi~r~~~s~~~~~~~~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NI 221 (404)
+.|+.+++.+.+.. ++..+..+|..|.+.| .++.++.+||.++|+++|++++.+. ..||
T Consensus 5 ~~~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s-------~~e~~~~~~l~~~l~~~G~~~~~~~------------~~n~ 65 (412)
T PRK12893 5 LRINGERLWDSLMALARIGATPGGGVTRLALT-------DEDREARDLLAQWMEEAGLTVSVDA------------IGNL 65 (412)
T ss_pred cccCHHHHHHHHHHHhcccCCCCCcEEeccCC-------HHHHHHHHHHHHHHHHcCCEEEEcC------------CCcE
Confidence 34556666666663 4443444566677666 6678999999999999999998754 3699
Q ss_pred EEEeCCCC--CceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc--ccccCC
Q psy15910 222 IGHVNPTA--PRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA--FNEWSA 297 (404)
Q Consensus 222 Ia~l~g~a--~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~--F~~W~~ 297 (404)
|+++.+.. .+.|+|.+|+|+||.. |..|+..|+|++|.+++.|++.. ..++.+|.|+|..+||. |..
T Consensus 66 ~a~~~g~~~~~~~l~l~~H~DtVp~~----g~~dgk~gvaa~l~a~~~l~~~~--~~~~~~v~~~~~~dEE~g~~~~--- 136 (412)
T PRK12893 66 FGRRAGTDPDAPPVLIGSHLDTQPTG----GRFDGALGVLAALEVVRTLNDAG--IRTRRPIEVVSWTNEEGARFAP--- 136 (412)
T ss_pred EEEeCCCCCCCCEEEEEecccCCCCC----CcccchhhHHHHHHHHHHHHHcC--CCCCCCeEEEEEcccccccccc---
Confidence 99997643 4689999999999862 67899999999999999998752 34678999999999996 111
Q ss_pred CCCchhhHHHHHH
Q psy15910 298 EDSIWGARHLAAK 310 (404)
Q Consensus 298 ~DgL~GSr~la~~ 310 (404)
++.||+++++.
T Consensus 137 --~~~G~~~~~~~ 147 (412)
T PRK12893 137 --AMLGSGVFTGA 147 (412)
T ss_pred --ccccHHHHhCc
Confidence 47899998854
No 15
>KOG2195|consensus
Probab=99.37 E-value=2.2e-12 Score=140.28 Aligned_cols=118 Identities=22% Similarity=0.266 Sum_probs=97.7
Q ss_pred ceeeEEEEEeCCC--CCceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhc-CCCCcCEEEEEecCcccc
Q psy15910 216 LTFTNIIGHVNPT--APRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQ-LNQNLGLDLIFFDGEEAF 292 (404)
Q Consensus 216 ~~~~NIIa~l~g~--a~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~-~~~~~tI~fVfFdgEE~F 292 (404)
.+..||||+++|. ++++||+|+|.||.-+ ||.|.++|+|.|+|++|.+...++. .+|.++|.|+.|||||.
T Consensus 336 ~ki~NIig~I~Gs~epD~~ViigahrDSw~~-----Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEf- 409 (702)
T KOG2195|consen 336 TKIQNIIGKIEGSEEPDRYVIIGAHRDSWTF-----GAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEF- 409 (702)
T ss_pred eeeeeEEEEEecCcCCCeEEEEecccccccc-----CCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhc-
Confidence 4588999999985 4789999999999865 9999999999999999999986643 68999999999999997
Q ss_pred cccCCCCCchhhHHHHHHHHhhhccccCccccccCCccEEEEeccCCCCCCcceecCCCcHHHHHHH
Q psy15910 293 NEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQL 359 (404)
Q Consensus 293 ~~W~~~DgL~GSr~la~~~~~~~~p~~~~~~~~l~~I~~~IlLDmIG~~~p~f~~~~~~T~~~~~~l 359 (404)
|+.||.-|++.+.+. .-.++.++|++|+++.++..| ...+.+....+
T Consensus 410 -------GliGStE~~E~~~~~----------L~~~av~yin~d~~~~~~~~l---~~~~~PlL~~l 456 (702)
T KOG2195|consen 410 -------GLLGSTEWAEEYLKN----------LKSRAVVYINVDNAVLGDYTL---HVKTTPLLTDL 456 (702)
T ss_pred -------cccccHHHHHHHHHH----------hhheeEEEEeccccccCCcee---EEecCccHHHH
Confidence 899999999987664 345789999999999998443 33344444433
No 16
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.33 E-value=2.7e-11 Score=123.69 Aligned_cols=114 Identities=23% Similarity=0.291 Sum_probs=92.0
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC-----C--------
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS-----P-------- 247 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d-----~-------- 247 (404)
++..++++||+++|+++|++++.+.+... ...||||++.+...+.|++.+|+|++|..+ +
T Consensus 57 ~~~~~~~~~l~~~L~~~G~~v~~~~~~~~-------~~~~lia~~~g~~~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~i 129 (410)
T PRK06133 57 EGLKQVAALLAERLKALGAKVERAPTPPS-------AGDMVVATFKGTGKRRIMLIAHMDTVYLPGMLAKQPFRIDGDRA 129 (410)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEccCCC-------CCCeEEEEECCCCCceEEEEeecCccCCCCccCCCCEEEECCEE
Confidence 45678999999999999999988764211 136999999765567899999999998521 1
Q ss_pred -CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHH
Q psy15910 248 -FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 311 (404)
Q Consensus 248 -f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~ 311 (404)
..|+.|+.+|+|++|++++.|++.. .++..+|.|+|..+||. +..|++++.+.+
T Consensus 130 yGrG~~D~kgg~a~~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~--------g~~G~~~~~~~~ 184 (410)
T PRK06133 130 YGPGIADDKGGVAVILHALKILQQLG--FKDYGTLTVLFNPDEET--------GSPGSRELIAEL 184 (410)
T ss_pred ECCccccchHHHHHHHHHHHHHHHcC--CCCCCCEEEEEECCccc--------CCccHHHHHHHH
Confidence 3799999999999999999998752 34567999999999996 557999998764
No 17
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.25 E-value=1e-10 Score=117.28 Aligned_cols=116 Identities=22% Similarity=0.223 Sum_probs=89.1
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCC-CceEEEEEecCCcCCCC-------C-----
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTA-PRALSLACHYDSKIMAS-------P----- 247 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a-~~~IVLgAHYDSv~~~d-------~----- 247 (404)
.++.++++||+++|+++|++++........+ ....|+++.+.+.. .+.|+|.||+|++|..+ +
T Consensus 18 ~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~ 93 (375)
T TIGR01910 18 GNEETIANYIKDLLREFGFSTDVIEITDDRL----KVLGKVVVKEPGNGNEKSLIFNGHYDVVPAGDLELWKTDPFKPVE 93 (375)
T ss_pred cCHHHHHHHHHHHHHHCCCceEEEecCchhc----ccccceEEeccCCCCCCEEEEecccccccCCChhhCcCCCCCcEE
Confidence 3568899999999999999988765321111 11236777776653 57899999999998641 2
Q ss_pred ------CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 ------FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 ------f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+.+|+|++|++++.|.+.. ..++.+|.|+|..+||. +..|++.+++.
T Consensus 94 ~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~--~~~~~~i~~~~~~~EE~--------g~~G~~~~~~~ 152 (375)
T TIGR01910 94 KDGKLYGRGATDMKGGLVALLYALKAIREAG--IKPNGNIILQSVVDEES--------GEAGTLYLLQR 152 (375)
T ss_pred ECCEEEecCccccchHHHHHHHHHHHHHHcC--CCCCccEEEEEEcCccc--------CchhHHHHHHc
Confidence 2699999999999999999998741 34678999999999996 56799988753
No 18
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.22 E-value=2.3e-10 Score=114.76 Aligned_cols=109 Identities=23% Similarity=0.315 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC-------C--------
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS-------P-------- 247 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d-------~-------- 247 (404)
+.++++||.++|+++|++++.+.+.. + ..|+++++.+ .++.|++.+|+|+||..+ +
T Consensus 21 e~~~~~~l~~~l~~~G~~~~~~~~~~-----~---~~~l~a~~g~-~~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g 91 (377)
T PRK08588 21 EIEVANYLQDLFAKHGIESKIVKVND-----G---RANLVAEIGS-GSPVLALSGHMDVVAAGDVDKWTYDPFELTEKDG 91 (377)
T ss_pred HHHHHHHHHHHHHHCCCceEEEecCC-----C---CceEEEEeCC-CCceEEEEeeecccCCCCcccCcCCCCCeEEECC
Confidence 46899999999999999988765321 1 3799999854 347899999999999631 1
Q ss_pred ---CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 ---FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 ---f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+..|+|++|.+++.|.+.. ..++.+|.|+|..+||. +..|+++++++
T Consensus 92 ~l~GrG~~D~Kgg~aa~l~a~~~l~~~~--~~~~~~i~l~~~~dEE~--------g~~G~~~~~~~ 147 (377)
T PRK08588 92 KLYGRGATDMKSGLAALVIAMIELKEQG--QLLNGTIRLLATAGEEV--------GELGAKQLTEK 147 (377)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHcC--CCCCCcEEEEEEccccc--------CchhHHHHHhc
Confidence 3789999999999999999998752 35678999999999996 55799998764
No 19
>PRK07906 hypothetical protein; Provisional
Probab=99.21 E-value=1.4e-10 Score=118.53 Aligned_cols=114 Identities=22% Similarity=0.215 Sum_probs=92.0
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCC--CceEEEEEecCCcCCC-------------
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTA--PRALSLACHYDSKIMA------------- 245 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a--~~~IVLgAHYDSv~~~------------- 245 (404)
+++.++++||.++|+++|++++.+... .+ ..|||+++.+.. .+.|+|.+|+|+||..
T Consensus 22 ~~e~~~~~~l~~~l~~~G~~~~~~~~~-----~~---~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~ 93 (426)
T PRK07906 22 KGEREAAEYVAEKLAEVGLEPTYLESA-----PG---RANVVARLPGADPSRPALLVHGHLDVVPAEAADWSVHPFSGEI 93 (426)
T ss_pred chHHHHHHHHHHHHHhCCCCeEEeecC-----CC---ceEEEEEEeCCCCCCCcEEEEcccccCCCCcccCccCCCCcee
Confidence 457889999999999999999886521 12 579999997642 3689999999999862
Q ss_pred -CC---CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHH
Q psy15910 246 -SP---FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 311 (404)
Q Consensus 246 -d~---f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~ 311 (404)
++ ..|+.|++.|+|++|++++.|++.. ..++.+|.|+|+.+||. .+..|++++++..
T Consensus 94 ~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~-------g~~~g~~~l~~~~ 154 (426)
T PRK07906 94 RDGYVWGRGAVDMKDMDAMMLAVVRHLARTG--RRPPRDLVFAFVADEEA-------GGTYGAHWLVDNH 154 (426)
T ss_pred eCCEEEecCccccchHHHHHHHHHHHHHHcC--CCCCccEEEEEecCccc-------chhhhHHHHHHHH
Confidence 11 3799999999999999999998752 45778999999999996 1457999998754
No 20
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.21 E-value=1.7e-10 Score=118.20 Aligned_cols=111 Identities=21% Similarity=0.195 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCC---CceEEEEEecCCcCCCC-------C----
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTA---PRALSLACHYDSKIMAS-------P---- 247 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a---~~~IVLgAHYDSv~~~d-------~---- 247 (404)
+++++++||+++|+++|++++.+.... + ..|||+++.++. ++.|+|.+|+|++|..+ +
T Consensus 34 ~e~~~a~~l~~~l~~~G~~~~~~~~~~-----~---~~nvia~~~g~~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~ 105 (421)
T PRK08596 34 NTNEAQEFIAEFLRKLGFSVDKWDVYP-----N---DPNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPT 105 (421)
T ss_pred hHHHHHHHHHHHHHHCCCeEEEEEccC-----C---CceEEEEecCCCCCCCcEEEEeccccccCCCCccccccCCCCcE
Confidence 567889999999999999988765321 2 379999997643 25799999999998531 1
Q ss_pred -------CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 -------FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 -------f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+.+|+|++|.+++.|.+.. ..++.+|.|+|..+||. +..|++++++.
T Consensus 106 ~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~--~~~~~~v~~~~~~dEE~--------g~~G~~~~~~~ 165 (421)
T PRK08596 106 IKDGWLYGRGAADMKGGLAGALFAIQLLHEAG--IELPGDLIFQSVIGEEV--------GEAGTLQCCER 165 (421)
T ss_pred EECCEEEeccccccchHHHHHHHHHHHHHHcC--CCCCCcEEEEEEecccc--------CCcCHHHHHhc
Confidence 3899999999999999999998752 35678999999999996 55799988753
No 21
>PRK07338 hypothetical protein; Provisional
Probab=99.20 E-value=2.5e-10 Score=115.54 Aligned_cols=120 Identities=19% Similarity=0.209 Sum_probs=90.7
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCC---C----CceeeEEEEEeCCCCCceEEEEEecCCcCCC-C------
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNF---G----RLTFTNIIGHVNPTAPRALSLACHYDSKIMA-S------ 246 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~---G----~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~-d------ 246 (404)
++..++++||.++|+++|++++....... +.. + .-...||||++.+..++.|+|.+|||+||.. +
T Consensus 37 ~~~~~~~~~l~~~l~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~nl~a~~~~~~~~~lll~gH~DvVp~~~~Pf~~~~ 115 (402)
T PRK07338 37 DGLARMAELLADAFAALPGEIELIPLPPV-EVIDADGRTLEQAHGPALHVSVRPEAPRQVLLTGHMDTVFPADHPFQTLS 115 (402)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEecCCcc-ccccccccccccCcCCeEEEEECCCCCccEEEEeecCccCCCCCcccCCe
Confidence 55678999999999999999987653210 100 1 0112699999976655579999999999852 1
Q ss_pred ----C---CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHH
Q psy15910 247 ----P---FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 311 (404)
Q Consensus 247 ----~---f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~ 311 (404)
+ ..|+.|+.+|+|++|.+++.|.+.. ..++.+|.|+|..+||. +..|++.+....
T Consensus 116 ~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~--------g~~g~~~~~~~~ 177 (402)
T PRK07338 116 WLDDGTLNGPGVADMKGGIVVMLAALLAFERSP--LADKLGYDVLINPDEEI--------GSPASAPLLAEL 177 (402)
T ss_pred EeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcC--CCCCCCEEEEEECCccc--------CChhhHHHHHHH
Confidence 1 3689999999999999999997641 34567999999999996 557898887653
No 22
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.20 E-value=9.3e-11 Score=122.25 Aligned_cols=105 Identities=27% Similarity=0.316 Sum_probs=84.6
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCC----CCceEEEEEecCCcCCCC----------
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPT----APRALSLACHYDSKIMAS---------- 246 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~----a~~~IVLgAHYDSv~~~d---------- 246 (404)
.++.++++||+++|+++|++++.+. ..||++++++. ..+.|++.+|+||||..+
T Consensus 21 ~~e~~~~~~l~~~l~~~G~~~~~~~------------~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~ 88 (477)
T TIGR01893 21 KNEKEVSNFIVNWAKKLGLEVKQDE------------VGNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKD 88 (477)
T ss_pred ccHHHHHHHHHHHHHHcCCeEEEeC------------CCeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCC
Confidence 3467899999999999999999876 47999999643 246899999999998531
Q ss_pred --------C---CCCCC---CCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHH
Q psy15910 247 --------P---FIGAT---DSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 311 (404)
Q Consensus 247 --------~---f~GA~---D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~ 311 (404)
+ .+|++ |++.|||++|++++. . ..+..+|.++|+.+||. ++.||++++..+
T Consensus 89 p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~---~~~~~~i~~~~~~dEE~--------g~~Gs~~l~~~~ 153 (477)
T TIGR01893 89 PIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---N---NLKHPPLELLFTVDEET--------GMDGALGLDENW 153 (477)
T ss_pred CeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---C---CCCCCCEEEEEEecccc--------CchhhhhcChhh
Confidence 1 36775 999999999998764 1 23456999999999997 788999997654
No 23
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.20 E-value=2.3e-10 Score=113.47 Aligned_cols=110 Identities=23% Similarity=0.265 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCC------CC----------
Q psy15910 184 LKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMA------SP---------- 247 (404)
Q Consensus 184 ~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~------d~---------- 247 (404)
.++++||.++|+++|++++.+.+... ....||++++.++..+.|+|.+|+|++|.. ++
T Consensus 18 ~~~~~~l~~~l~~~G~~~~~~~~~~~------~~~~nl~~~~~~~~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i 91 (364)
T TIGR01892 18 VDLIDWAQAYLEALGFSVEVQPFPDG------AEKSNLVAVIGPSGAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRL 91 (364)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCC------CccccEEEEecCCCCCeEEEEcccccccCCCCcCCCCCCcceeeCCEE
Confidence 68899999999999999988764321 124799999976556789999999999863 11
Q ss_pred -CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHH
Q psy15910 248 -FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 311 (404)
Q Consensus 248 -f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~ 311 (404)
..|+.|+.+|+|++|.+++.|.+. ..+.+|.|+|..+||. +..|+++++...
T Consensus 92 ~GrG~~D~Kg~~a~~l~a~~~l~~~----~~~~~v~~~~~~~EE~--------g~~G~~~~~~~~ 144 (364)
T TIGR01892 92 YGRGTCDMKGFLACALAAAPDLAAE----QLKKPLHLALTADEEV--------GCTGAPKMIEAG 144 (364)
T ss_pred EecCccccchHHHHHHHHHHHHHhc----CcCCCEEEEEEecccc--------CCcCHHHHHHhc
Confidence 379999999999999999999863 3567899999999996 556999998654
No 24
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.19 E-value=1.4e-10 Score=118.73 Aligned_cols=107 Identities=18% Similarity=0.257 Sum_probs=85.0
Q ss_pred ChHhHHHHHHHHHHHHHhCCCe-EEEEcccCccCCCCCceeeEEEEEeCCCCC---ceEEEEEecCCcCCC---------
Q psy15910 179 TIENLLKIFQYIISELKSSGLD-VETDTFSDTVPNFGRLTFTNIIGHVNPTAP---RALSLACHYDSKIMA--------- 245 (404)
Q Consensus 179 ~~~~~~~a~~yI~~~L~~lG~~-Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~---~~IVLgAHYDSv~~~--------- 245 (404)
+++++.+.++||+++|+++|++ |++|. +.+||||++++... +.|+|.||+|||+.+
T Consensus 28 s~~~~~~~a~~l~~~l~~lG~~~v~~d~-----------~~gnv~~~~~~~~~~~~~~i~~~aHmDTv~~~~~~v~p~~~ 96 (410)
T TIGR01882 28 STPGQLTFGNMLVDDLKSLGLQDAHYDE-----------KNGYVIATIPSNTDKDVPTIGFLAHVDTADFNGENVNPQII 96 (410)
T ss_pred CCHhHHHHHHHHHHHHHHcCCceEEEcC-----------CceEEEEEecCCCCCCCCEEEEEEecccCcCCCCCCCCEEE
Confidence 3455668999999999999997 99884 14899999976544 799999999999731
Q ss_pred -------------------------------------CC--CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEe
Q psy15910 246 -------------------------------------SP--FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFF 286 (404)
Q Consensus 246 -------------------------------------d~--f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfF 286 (404)
++ ..| .|+.+|+|+||.+++.|++.. ..++.+|.|+|.
T Consensus 97 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G-~D~KgglAa~l~A~~~L~e~~--~~~~g~I~~~ft 173 (410)
T TIGR01882 97 ENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLG-ADDKAGIAEIMTAADYLINHP--EIKHGTIRVAFT 173 (410)
T ss_pred ecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeec-ccCHHHHHHHHHHHHHHHhCC--CCCCCCEEEEEE
Confidence 11 356 788999999999999998731 224678999999
Q ss_pred cCcccccccCCCCCchhhHHHH
Q psy15910 287 DGEEAFNEWSAEDSIWGARHLA 308 (404)
Q Consensus 287 dgEE~F~~W~~~DgL~GSr~la 308 (404)
.+||. + .|++++.
T Consensus 174 ~dEE~--------g-~Ga~~l~ 186 (410)
T TIGR01882 174 PDEEI--------G-RGAHKFD 186 (410)
T ss_pred CcccC--------C-cCcchhh
Confidence 99996 4 3888774
No 25
>KOG2526|consensus
Probab=99.18 E-value=3e-10 Score=116.39 Aligned_cols=142 Identities=18% Similarity=0.280 Sum_probs=107.0
Q ss_pred HHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCC--------CCCceEEEEEecCCcCCCCC-CCCCCCCchHH
Q psy15910 188 QYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNP--------TAPRALSLACHYDSKIMASP-FIGATDSAVPC 258 (404)
Q Consensus 188 ~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g--------~a~~~IVLgAHYDSv~~~d~-f~GA~D~AsGv 258 (404)
+.+.+.....|+++..-.-+...| ...+..||.|++.+ ++-+.|++.|||||....++ .+||+-|+||+
T Consensus 165 ~~ll~Tasangy~iv~sg~sp~a~--~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGv 242 (555)
T KOG2526|consen 165 QHLLQTASANGYSIVSSGQSPEAP--PSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGV 242 (555)
T ss_pred HHHHhhhccCcEEEEecCCCcccC--CCCccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccH
Confidence 667777777788876644333322 24568999999972 34689999999999877544 79999999999
Q ss_pred HHHHHHHHHHHHHhhc--CCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHhhhccccCccccccCCccEEEEec
Q psy15910 259 AMLLYIARLMRQELSQ--LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLD 336 (404)
Q Consensus 259 A~LLElAr~L~~~l~~--~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~~~~p~~~~~~~~l~~I~~~IlLD 336 (404)
.+|||+||.+.+.... ...+++|.|+..+|--- ...|+|++.+.-.. .--++|+++||||
T Consensus 243 vaLLelarlfSkly~ypsTrakYnLlF~lt~aG~l--------NyqGTkkWLe~dd~----------~lq~nVdfaiCLd 304 (555)
T KOG2526|consen 243 VALLELARLFSKLYDYPSTRAKYNLLFILTAAGKL--------NYQGTKKWLEFDDA----------DLQKNVDFAICLD 304 (555)
T ss_pred HHHHHHHHHHHHHhcCcccccceeEEEEEccCccc--------cccchhhhhhcchH----------HHHhcccEEEEhh
Confidence 9999999999986532 35789999999988663 56799987663222 1224899999999
Q ss_pred cCCCCCCcceecC
Q psy15910 337 LLGTSNPRFYSYY 349 (404)
Q Consensus 337 mIG~~~p~f~~~~ 349 (404)
.||.....++.+-
T Consensus 305 tig~~~s~l~mHv 317 (555)
T KOG2526|consen 305 TIGRKTSGLFMHV 317 (555)
T ss_pred hhccccCceEEEc
Confidence 9999866555554
No 26
>PRK09133 hypothetical protein; Provisional
Probab=99.18 E-value=3.6e-10 Score=117.43 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHhCCCeEEE-EcccCccCCCCCceeeEEEEEeCCCC-CceEEEEEecCCcCCC------C-------
Q psy15910 182 NLLKIFQYIISELKSSGLDVET-DTFSDTVPNFGRLTFTNIIGHVNPTA-PRALSLACHYDSKIMA------S------- 246 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~-d~F~~~tp~~G~~~~~NIIa~l~g~a-~~~IVLgAHYDSv~~~------d------- 246 (404)
++.++++||.++|+++|++++. +.+.. . . ...|||+++.+.. .+.|+|.+|||+||.. +
T Consensus 57 ~e~~~~~~l~~~l~~~G~~~~~~~~~~~-~--~---~~~nli~~~~g~~~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~ 130 (472)
T PRK09133 57 STTPAAEAMAARLKAAGFADADIEVTGP-Y--P---RKGNLVARLRGTDPKKPILLLAHMDVVEAKREDWTRDPFKLVEE 130 (472)
T ss_pred chHHHHHHHHHHHHHcCCCceEEEeccC-C--C---CceeEEEEecCCCCCCcEEEEeecccCCCChhcCCCCCCcceEe
Confidence 4678999999999999998642 22210 1 1 1479999997643 3689999999999852 1
Q ss_pred -C---CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcc-cccccCCCCCchhhHHHHHHHH
Q psy15910 247 -P---FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE-AFNEWSAEDSIWGARHLAAKWE 312 (404)
Q Consensus 247 -~---f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE-~F~~W~~~DgL~GSr~la~~~~ 312 (404)
+ ..|+.|+++|+|++|++++.|.+.. ..++.+|.|+|..+|| . +..|++++.+...
T Consensus 131 dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~~--------g~~G~~~l~~~~~ 191 (472)
T PRK09133 131 NGYFYGRGTSDDKADAAIWVATLIRLKREG--FKPKRDIILALTGDEEGT--------PMNGVAWLAENHR 191 (472)
T ss_pred CCEEEecCcccchHHHHHHHHHHHHHHhcC--CCCCCCEEEEEECccccC--------ccchHHHHHHHHh
Confidence 1 3799999999999999999998742 3577899999999999 5 6789999987643
No 27
>PRK13381 peptidase T; Provisional
Probab=99.17 E-value=3.1e-10 Score=115.38 Aligned_cols=107 Identities=16% Similarity=0.273 Sum_probs=85.4
Q ss_pred hHhHHHHHHHHHHHHHhCCCe-EEEEcccCccCCCCCceeeEEEEEeCCCCC--ceEEEEEecCCcCCCCC---------
Q psy15910 180 IENLLKIFQYIISELKSSGLD-VETDTFSDTVPNFGRLTFTNIIGHVNPTAP--RALSLACHYDSKIMASP--------- 247 (404)
Q Consensus 180 ~~~~~~a~~yI~~~L~~lG~~-Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~--~~IVLgAHYDSv~~~d~--------- 247 (404)
++++.++++||.++|+++|++ ++++. ..||||++.++.+ +.|+|.+|+|+||..+.
T Consensus 27 ~~~~~~~~~~l~~~l~~~G~~~~~~~~------------~~nvi~~~~g~~~~~~~lll~~H~D~Vp~~~~~~~~p~~~~ 94 (404)
T PRK13381 27 TPGQHELAKLLADELRELGLEDIVIDE------------HAIVTAKLPGNTPGAPRIGFIAHLDTVDVGLSPDIHPQILR 94 (404)
T ss_pred ChhHHHHHHHHHHHHHHcCCCcEEEcC------------CeEEEEEEecCCCCCCeEEEEEEecCCCccCCCCcCcEEEe
Confidence 466789999999999999995 54432 4699999976532 79999999999975321
Q ss_pred ----------------------------------CCCC----CCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCc
Q psy15910 248 ----------------------------------FIGA----TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGE 289 (404)
Q Consensus 248 ----------------------------------f~GA----~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgE 289 (404)
..|+ .|+.+|+|++|.+++.|.+. .....+|.|+|..+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~---~~~~g~i~~~~~~dE 171 (404)
T PRK13381 95 FDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTEN---EVEHGDIVVAFVPDE 171 (404)
T ss_pred cCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEccc
Confidence 1477 89999999999999999874 234668999999999
Q ss_pred ccccccCCCCCchhhHHHHH
Q psy15910 290 EAFNEWSAEDSIWGARHLAA 309 (404)
Q Consensus 290 E~F~~W~~~DgL~GSr~la~ 309 (404)
|. +..|++++..
T Consensus 172 E~--------g~~G~~~~~~ 183 (404)
T PRK13381 172 EI--------GLRGAKALDL 183 (404)
T ss_pred cc--------ccccHHHHHH
Confidence 96 5569998853
No 28
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.17 E-value=5e-10 Score=112.49 Aligned_cols=118 Identities=24% Similarity=0.226 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHhCCCe-EEEEcccCccCCCCCceeeEEEEEeCCCC-CceEEEEEecCCcCCCC-------C-----
Q psy15910 182 NLLKIFQYIISELKSSGLD-VETDTFSDTVPNFGRLTFTNIIGHVNPTA-PRALSLACHYDSKIMAS-------P----- 247 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~-Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a-~~~IVLgAHYDSv~~~d-------~----- 247 (404)
++.++++||.++|+++|++ ++......... .+ -...||++.+.+.. .+.|+|.+|+|++|..+ +
T Consensus 28 ~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~-~~-~~~~nl~~~~~g~~~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~ 105 (400)
T PRK13983 28 GEKEKAEYLESLLKEYGFDEVERYDAPDPRV-IE-GVRPNIVAKIPGGDGKRTLWIISHMDVVPPGDLSLWETDPFKPVV 105 (400)
T ss_pred cHHHHHHHHHHHHHHcCCceEEEEecCCccc-cc-CCCccEEEEecCCCCCCeEEEEeeccccCCCCcccccCCCCccee
Confidence 4678999999999999998 77654321110 00 01389999997654 35899999999999632 1
Q ss_pred ------CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 ------FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 ------f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+..|++++|.+++.|.+.. ..++.+|.|+|..+||.- +..|++++++.
T Consensus 106 ~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~--~~~~~~v~~~~~~dEE~g-------~~~g~~~~~~~ 165 (400)
T PRK13983 106 KDGKIYGRGSEDNGQGIVSSLLALKALMDLG--IRPKYNLGLAFVSDEETG-------SKYGIQYLLKK 165 (400)
T ss_pred eCCEEEecCccCccchHHHHHHHHHHHHHhC--CCCCCcEEEEEEeccccC-------CcccHHHHHhh
Confidence 3789999999999999999998752 357789999999999951 33588888865
No 29
>PRK07473 carboxypeptidase; Provisional
Probab=99.15 E-value=8.6e-10 Score=111.74 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=88.0
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCC--CCceEEEEEecCCcCCCC-----------C
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPT--APRALSLACHYDSKIMAS-----------P 247 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~--a~~~IVLgAHYDSv~~~d-----------~ 247 (404)
++..++.+||.++|+++|++++.+.... | ...||++++.+. ..+.|+|.+|+|||+..+ +
T Consensus 31 ~~~~~~~~~l~~~l~~~G~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g 103 (376)
T PRK07473 31 AAVNRMLDLAARDMAIMGATIERIPGRQ-----G--FGDCVRARFPHPRQGEPGILIAGHMDTVHPVGTLEKLPWRREGN 103 (376)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEecCCC-----C--CCCeEEEEeCCCCCCCCeEEEEecCCCCCCCCCccCCCeEEECC
Confidence 4567788999999999999998764211 1 025899998632 357899999999995321 1
Q ss_pred ---CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 ---FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 ---f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+.+|+|++|.+++.|.+.. ..++.+|.|+|..+||. +..|++++.+.
T Consensus 104 ~lyGrG~~D~Kgglaa~l~A~~~l~~~~--~~~~~~v~~~~~~dEE~--------g~~g~~~~~~~ 159 (376)
T PRK07473 104 KCYGPGILDMKGGNYLALEAIRQLARAG--ITTPLPITVLFTPDEEV--------GTPSTRDLIEA 159 (376)
T ss_pred EEEcCchhhchHHHHHHHHHHHHHHHcC--CCCCCCEEEEEeCCccc--------CCccHHHHHHH
Confidence 4899999999999999999998752 23456899999999996 56799998865
No 30
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.15 E-value=8.6e-10 Score=110.19 Aligned_cols=112 Identities=18% Similarity=0.142 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC-------C--------
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS-------P-------- 247 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d-------~-------- 247 (404)
+.++++||.++|+++|++++..... + ..|+++++ +...+.|++.+|+|+||..+ +
T Consensus 21 e~~~~~~l~~~l~~~G~~~~~~~~~------~---~~n~~~~~-g~~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g 90 (375)
T PRK13009 21 DAGCQDLLAERLEALGFTCERMDFG------D---VKNLWARR-GTEGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDG 90 (375)
T ss_pred hhhHHHHHHHHHHHcCCeEEEeccC------C---CcEEEEEe-cCCCCEEEEEeecccCCCCCcccCCCCCCCcEEECC
Confidence 4678899999999999998765421 1 47999998 44557899999999998632 1
Q ss_pred ---CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHh
Q psy15910 248 ---FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWER 313 (404)
Q Consensus 248 ---f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~ 313 (404)
..|+.|+..|+|++|.+++.|.+.. ..++.+|.|+|..+||.. +..|++++.+.+.+
T Consensus 91 ~iyGrG~~D~Kgg~aa~l~a~~~l~~~~--~~~~~~i~~~~~~~EE~~-------~~~G~~~~~~~~~~ 150 (375)
T PRK13009 91 MLYGRGAADMKGSLAAFVVAAERFVAAH--PDHKGSIAFLITSDEEGP-------AINGTVKVLEWLKA 150 (375)
T ss_pred EEEecCCccChHHHHHHHHHHHHHHHhc--CCCCceEEEEEEeecccc-------cccCHHHHHHHHHH
Confidence 3699999999999999999998752 356789999999999951 45699999876543
No 31
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.14 E-value=6.2e-10 Score=111.06 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCC------CC---CCCCCC
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMA------SP---FIGATD 253 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~------d~---f~GA~D 253 (404)
+.++++||.++|+++|++++.+. ..|+||++.+ ..+.|++.+|||+||.. ++ ..|+.|
T Consensus 25 e~~~~~~l~~~l~~~G~~~~~~~------------~~n~i~~~~~-~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D 91 (348)
T PRK04443 25 EAAAAEFLVEFMESHGREAWVDE------------AGNARGPAGD-GPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVD 91 (348)
T ss_pred hHHHHHHHHHHHHHcCCEEEEcC------------CCcEEEEcCC-CCCEEEEEeeccccCCCCCcEeeCCeEEeecccc
Confidence 56899999999999999998765 4689999843 35799999999999842 12 589999
Q ss_pred CchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc
Q psy15910 254 SAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA 291 (404)
Q Consensus 254 ~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~ 291 (404)
+.+|+|++|++++.| . ..++.+|.|++..+||.
T Consensus 92 ~Kg~~aa~l~A~~~l-~----~~~~~~i~~~~~~dEE~ 124 (348)
T PRK04443 92 AKGPLAAFAAAAARL-E----ALVRARVSFVGAVEEEA 124 (348)
T ss_pred cccHHHHHHHHHHHh-c----ccCCCCEEEEEEccccc
Confidence 999999999999999 3 35678999999999996
No 32
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.13 E-value=1.2e-09 Score=109.56 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC--------------C--
Q psy15910 184 LKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS--------------P-- 247 (404)
Q Consensus 184 ~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d--------------~-- 247 (404)
.++++||.++|+++|++++...... + ...||++++.+...+.|+|.+|+|+++..+ +
T Consensus 25 ~~~~~~l~~~l~~~G~~~~~~~~~~-----~--~~~nv~a~~~~~~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i 97 (385)
T PRK07522 25 LALIEWVRDYLAAHGVESELIPDPE-----G--DKANLFATIGPADRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRL 97 (385)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCC-----C--CcccEEEEeCCCCCCeEEEEeecccccCCCCCCCCCCCceEEECCEE
Confidence 4889999999999999987753111 1 147999999765457899999999998521 1
Q ss_pred -CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHH
Q psy15910 248 -FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWE 312 (404)
Q Consensus 248 -f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~ 312 (404)
..|+.|+.+|+|++|++++.|.+. .++.+|.|+|..+||. +..|++++.....
T Consensus 98 ~GrG~~D~Kg~~a~~l~a~~~l~~~----~~~~~i~~~~~~dEE~--------g~~G~~~l~~~~~ 151 (385)
T PRK07522 98 YGRGTCDMKGFIAAALAAVPELAAA----PLRRPLHLAFSYDEEV--------GCLGVPSMIARLP 151 (385)
T ss_pred EeccccccchHHHHHHHHHHHHHhC----CCCCCEEEEEEecccc--------CCccHHHHHHHhh
Confidence 479999999999999999999873 4567999999999996 4569999987644
No 33
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.12 E-value=7.1e-10 Score=110.38 Aligned_cols=112 Identities=19% Similarity=0.258 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCC-ceEEEEEecCCcCCCCC-----------CC
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAP-RALSLACHYDSKIMASP-----------FI 249 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~-~~IVLgAHYDSv~~~d~-----------f~ 249 (404)
.+.++++||.++|+++|++++.+..... .....|+++++.++.+ +.|+|.+|+|+||..++ ..
T Consensus 18 ~e~~~~~~l~~~l~~~g~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~ 92 (361)
T TIGR01883 18 KEKAILTYLKKQITKLGIPVSLDEVPAE-----VSNDNNLIARLPGTVKFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSL 92 (361)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEeccccc-----cCCCceEEEEEeCCCCCCcEEEEeeccccCCCCCCCceecCCeEecC
Confidence 3578899999999999999887763211 1124799999976543 78999999999995321 36
Q ss_pred CC----CCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHH
Q psy15910 250 GA----TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 309 (404)
Q Consensus 250 GA----~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~ 309 (404)
|+ .|+.+|+|++|++++.|.+. ..++.+|.|+|..+||. ++.|++.|.+
T Consensus 93 G~~~~g~D~k~g~a~~l~~~~~l~~~---~~~~~~v~~~~~~~EE~--------g~~G~~~~~~ 145 (361)
T TIGR01883 93 GGTILGADDKAGVAAMLEAMDVLSTE---ETPHGTIEFIFTVKEEL--------GLIGMRLFDE 145 (361)
T ss_pred CCeEeeccccHHHHHHHHHHHHHHhc---CCCCCCEEEEEEccccc--------CchhHhHhCh
Confidence 77 79999999999999999874 34567999999999996 6679998865
No 34
>PRK06446 hypothetical protein; Provisional
Probab=99.12 E-value=8.9e-10 Score=113.50 Aligned_cols=109 Identities=17% Similarity=0.294 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC-------C-------
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS-------P------- 247 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d-------~------- 247 (404)
+..++++||.++|+++|++++.+.. .+ ..||||++.+...+.|+|.+|+|+||..+ +
T Consensus 23 ~~~~~a~~l~~~l~~~G~~ve~~~~------~~---~~~lia~~~~~~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~d 93 (436)
T PRK06446 23 GIEETANYLKDTMEKLGIKANIERT------KG---HPVVYGEINVGAKKTLLIYNHYDVQPVDPLSEWKRDPFSATIEN 93 (436)
T ss_pred hHHHHHHHHHHHHHHCCCeEEEEec------CC---CCEEEEEecCCCCCEEEEEecccCCCCCccccccCCCCceEEEC
Confidence 3478999999999999999987652 12 47999998654457899999999988521 1
Q ss_pred ----CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 ----FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 ----f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+.+|+|++|.+++.+.+. ..++.+|.|+|..+||. +..|++++..+
T Consensus 94 g~lyGRGa~DmKgglaa~l~A~~~l~~~---~~~~~~i~~~~~~dEE~--------g~~g~~~~l~~ 149 (436)
T PRK06446 94 GRIYARGASDNKGTLMARLFAIKHLIDK---HKLNVNVKFLYEGEEEI--------GSPNLEDFIEK 149 (436)
T ss_pred CEEEEEeccCCcHHHHHHHHHHHHHHHc---CCCCCCEEEEEEccccc--------CCHhHHHHHHH
Confidence 389999999999999999988754 34677999999999996 56788888755
No 35
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.11 E-value=8.5e-10 Score=110.68 Aligned_cols=109 Identities=20% Similarity=0.208 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC--------------C-
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS--------------P- 247 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d--------------~- 247 (404)
..++++||.++|+++|++++.+.... .| .-.||||++. ..++.|++.+|||++|..+ +
T Consensus 31 ~~~~~~~l~~~l~~~g~~~~~~~~~~-~~-----~~~nvia~~g-~~~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~ 103 (383)
T PRK05111 31 NRAVIDLLAGWFEDLGFNVEIQPVPG-TR-----GKFNLLASLG-SGEGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGK 103 (383)
T ss_pred hHHHHHHHHHHHHHCCCeEEEEecCC-CC-----CCceEEEEeC-CCCCeEEEEeeeceecCCCCcCcCCCCccEEECCE
Confidence 47899999999999999988876321 11 1369999994 4445799999999997521 1
Q ss_pred --CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 --FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 --f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+.+++|++|.+++.|.+. ..+.+|.|+|..+||. +..|++++++.
T Consensus 104 i~GrG~~D~Kg~~a~~l~a~~~l~~~----~~~~~i~~~~~~~EE~--------g~~G~~~~~~~ 156 (383)
T PRK05111 104 LYGLGTADMKGFFAFILEALRDIDLT----KLKKPLYILATADEET--------SMAGARAFAEA 156 (383)
T ss_pred EEecccccccHHHHHHHHHHHHHhhc----CCCCCeEEEEEecccc--------CcccHHHHHhc
Confidence 489999999999999999999863 3567899999999996 45699988864
No 36
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.11 E-value=1.9e-09 Score=109.85 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCccCCC-CCceeeEEEEEeCCC-CCceEEEEEecCCcCCCC-----C-------
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDTVPNF-GRLTFTNIIGHVNPT-APRALSLACHYDSKIMAS-----P------- 247 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~-G~~~~~NIIa~l~g~-a~~~IVLgAHYDSv~~~d-----~------- 247 (404)
++.++++||.++|+++|++++.+.... .|.. ......|+||++++. ..+.|+|.+|+|+||..+ +
T Consensus 35 ~e~~~~~~l~~~l~~~G~~~~~~~~~~-~~~~~~~~~~~nlia~~~g~~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~d 113 (427)
T PRK13013 35 AYREICEFLAARLAPRGFEVELIRAEG-APGDSETYPRWNLVARRQGARDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKD 113 (427)
T ss_pred cHHHHHHHHHHHHHHCCCceEEEecCC-CCcccccCCcceEEEEecCCCCCCEEEEEeccccCCCCCCCcCCCCCceEEC
Confidence 357899999999999999988765321 1100 011246999999764 346899999999998521 2
Q ss_pred ----CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHH
Q psy15910 248 ----FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 309 (404)
Q Consensus 248 ----f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~ 309 (404)
..|+.|+.+|+|++|.+++.|++.. ..++.+|.|+|..+||.- +..|.+++++
T Consensus 114 g~iyGrGa~D~Kg~~aa~l~a~~~l~~~~--~~~~~~v~~~~~~dEE~g-------~~~g~~~l~~ 170 (427)
T PRK13013 114 GRIYGRGACDMKGGLAASIIAAEAFLAVY--PDFAGSIEISGTADEESG-------GFGGVAYLAE 170 (427)
T ss_pred CEEEeccccccchHHHHHHHHHHHHHHhC--CCCCccEEEEEEeccccC-------ChhHHHHHHh
Confidence 2699999999999999999998752 356779999999999950 3336666654
No 37
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.09 E-value=1.5e-09 Score=109.33 Aligned_cols=116 Identities=21% Similarity=0.192 Sum_probs=87.7
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC------C-------
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS------P------- 247 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d------~------- 247 (404)
+++.++++||.++|+++|++++.+......+........||++...+. ++.|+|.+|+|++|..+ +
T Consensus 26 ~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~ 104 (394)
T PRK08651 26 ENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARRGSG-NPHLHFNGHYDVVPPGEGWSVNVPFEPKVKD 104 (394)
T ss_pred cCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEeCCC-CceEEEEeeeeeecCCCCccccCCCCcEEEC
Confidence 346789999999999999999887632111100001136789876443 47899999999998531 1
Q ss_pred ----CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 ----FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 ----f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+..|+|++|++++.|.+. . +.+|.|+|..+||. +..|++++++.
T Consensus 105 ~~~~grG~~D~k~~~~~~l~a~~~l~~~----~-~~~v~~~~~~~EE~--------g~~G~~~~~~~ 158 (394)
T PRK08651 105 GKVYGRGASDMKGGIAALLAAFERLDPA----G-DGNIELAIVPDEET--------GGTGTGYLVEE 158 (394)
T ss_pred CEEEecCccccchHHHHHHHHHHHHHhc----C-CCCEEEEEecCccc--------cchhHHHHHhc
Confidence 378999999999999999999763 2 78999999999996 45799998864
No 38
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.09 E-value=1.5e-09 Score=109.90 Aligned_cols=111 Identities=17% Similarity=0.129 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCC--CceEEEEEecCCcCCC---------------
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTA--PRALSLACHYDSKIMA--------------- 245 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a--~~~IVLgAHYDSv~~~--------------- 245 (404)
+.++++||.++|+++|++++..... .| ..|+++++.++. .+.|+|.+|+|+||..
T Consensus 30 ~~~~~~~l~~~l~~~G~~~~~~~~~-----~g---~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~ 101 (400)
T TIGR01880 30 YAACVDFLIKQADELGLARKTIEFV-----PG---KPVVVLTWPGSNPELPSILLNSHTDVVPVFREHWTHPPFSAFKDE 101 (400)
T ss_pred HHHHHHHHHHHHHhCCCceeEEEec-----CC---ceeEEEEEecCCCCCCeEEEEcccccCCCCcccCccCCccceecC
Confidence 5788999999999999988764421 12 479999997643 3689999999999852
Q ss_pred CC---CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 246 SP---FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 246 d~---f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
++ ..|+.|+.+|+|++|.+++.|.+.. ..++.+|.|+|..+||.. +..|++++.+.
T Consensus 102 dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~--~~~~~~v~l~~~~dEE~g-------~~~G~~~~~~~ 160 (400)
T TIGR01880 102 DGNIYARGAQDMKCVGVQYLEAVRNLKASG--FKFKRTIHISFVPDEEIG-------GHDGMEKFAKT 160 (400)
T ss_pred CCeEEEcccccccHHHHHHHHHHHHHHHcC--CCCCceEEEEEeCCcccC-------cHhHHHHHHHh
Confidence 11 4799999999999999999998752 346789999999999961 34699988764
No 39
>PRK07907 hypothetical protein; Provisional
Probab=99.08 E-value=2.3e-09 Score=110.77 Aligned_cols=108 Identities=22% Similarity=0.249 Sum_probs=86.4
Q ss_pred HhHHHHHHHHHHHHHhCCC-eEEEEcccCccCCCCCceeeEEEEEeCCC-CCceEEEEEecCCcCCCC-------C----
Q psy15910 181 ENLLKIFQYIISELKSSGL-DVETDTFSDTVPNFGRLTFTNIIGHVNPT-APRALSLACHYDSKIMAS-------P---- 247 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~-~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~-a~~~IVLgAHYDSv~~~d-------~---- 247 (404)
+++.++++||.++|+++|+ +++... . .+ ..||||++.++ ..+.|+|.+|+|+||..+ +
T Consensus 41 ~~~~~~~~~l~~~l~~~g~~~~~~~~----~--~~---~~nl~a~~~~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~ 111 (449)
T PRK07907 41 EEVARSAEWVADLLREAGFDDVRVVS----A--DG---APAVIGTRPAPPGAPTVLLYAHHDVQPPGDPDAWDSPPFELT 111 (449)
T ss_pred hhHHHHHHHHHHHHHHcCCceEEEEe----c--CC---CCEEEEEecCCCCCCEEEEEcccCCCCCCCccccCCCCceeE
Confidence 4467899999999999998 677654 1 12 47999999764 357899999999998631 2
Q ss_pred -------CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 -------FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 -------f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+.+|+|++|.+++.| . ..++.+|.|++.+.||. +..|++++++.
T Consensus 112 ~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~----~~~~~~i~~~~~~dEE~--------g~~g~~~~l~~ 168 (449)
T PRK07907 112 ERDGRLYGRGAADDKGGIAMHLAALRAL-G----GDLPVGVTVFVEGEEEM--------GSPSLERLLAE 168 (449)
T ss_pred EECCEEEECCccCCcHHHHHHHHHHHHh-c----cCCCCcEEEEEEcCccc--------CCccHHHHHHh
Confidence 369999999999999999998 2 34568899999888985 55699998875
No 40
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.06 E-value=2e-09 Score=106.62 Aligned_cols=103 Identities=23% Similarity=0.277 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC--------C---CCC
Q psy15910 183 LLKIFQYIISELKSS-GLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS--------P---FIG 250 (404)
Q Consensus 183 ~~~a~~yI~~~L~~l-G~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d--------~---f~G 250 (404)
+.++++||.++|+++ |++++.+ ..|+|+++.+..++.|+|.||||++|..+ + ..|
T Consensus 26 e~~~~~~l~~~l~~~~~~~~~~~-------------~~~~~~~~~~~~~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG 92 (352)
T PRK13007 26 EKALADAVEAALRALPHLEVIRH-------------GNSVVARTDLGRPSRVVLAGHLDTVPVADNLPSRREGDRLYGCG 92 (352)
T ss_pred HHHHHHHHHHHHHhCcCceEEec-------------CCeEEEEccCCCCCeEEEEccccccCCCCCCCcceeCCEEEccC
Confidence 568899999999996 8876542 15899999644445799999999999642 1 489
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 251 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 251 A~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
++|+.+|+|++|.+++.|. .++.+|.|+|..+||... ..-|++.+...
T Consensus 93 ~~D~Kg~~a~~l~a~~~l~------~~~~~i~~~~~~~EE~~~------~~~G~~~~~~~ 140 (352)
T PRK13007 93 ASDMKSGLAVMLHLAATLA------EPAHDLTLVFYDCEEVEA------EANGLGRLARE 140 (352)
T ss_pred cccccHHHHHHHHHHHHhh------ccCCCeEEEEEecccccC------CcccHHHHHHh
Confidence 9999999999999999993 256789999999999510 12478777654
No 41
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.05 E-value=2.4e-09 Score=103.28 Aligned_cols=110 Identities=22% Similarity=0.266 Sum_probs=88.8
Q ss_pred ceEEEEEecCCcCCCC-CCCCCCCCchHHHHHHHHHHHHHHHhhc-CCCCcCEEEEEecCcccccccCCCCCchhhHHHH
Q psy15910 231 RALSLACHYDSKIMAS-PFIGATDSAVPCAMLLYIARLMRQELSQ-LNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLA 308 (404)
Q Consensus 231 ~~IVLgAHYDSv~~~d-~f~GA~D~AsGvA~LLElAr~L~~~l~~-~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la 308 (404)
+.|+++|.+||.-+-+ -.+||++.++|+++||++|++|++.+.. ...++.|.|+||.||.- +..||+.|+
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~--------dYiGS~R~v 72 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESF--------DYIGSSRFV 72 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccc--------cccchHHHH
Confidence 4799999999987643 3789999999999999999999876322 45789999999999986 678999999
Q ss_pred HHHHhhhccccCc--cccccCCccEEEEeccCCCCCC-cceec
Q psy15910 309 AKWERSHLQHRGK--TLTKLDRMDMLVLLDLLGTSNP-RFYSY 348 (404)
Q Consensus 309 ~~~~~~~~p~~~~--~~~~l~~I~~~IlLDmIG~~~p-~f~~~ 348 (404)
..|.+...|.... ....+++|+.+|.|+.+|.... .++.+
T Consensus 73 yDm~~~~f~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~H 115 (234)
T PF05450_consen 73 YDMQNGNFPSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAH 115 (234)
T ss_pred HHHHcCcCcccccccccccHHHCCEEEEeeccCCCCCCCEEEE
Confidence 9988776552111 2266899999999999999765 45555
No 42
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.05 E-value=1.5e-09 Score=107.07 Aligned_cols=104 Identities=25% Similarity=0.308 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC------C---CCCCCC
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS------P---FIGATD 253 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d------~---f~GA~D 253 (404)
+.++++||.++|+++|++++.+.. +. ..|+++ + ..+.|+|.||||++|... + ..|+.|
T Consensus 21 e~~~~~~l~~~l~~~G~~v~~~~~-------~~--~~~~~~---~-~~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D 87 (347)
T PRK08652 21 EDEIALHIMEFLESLGYDVHIESD-------GE--VINIVV---N-SKAELFVEVHYDTVPVRAEFFVDGVYVYGTGACD 87 (347)
T ss_pred hHHHHHHHHHHHHHcCCEEEEEec-------Cc--eeEEEc---C-CCCEEEEEccccccCCCCCCEEECCEEEeccchh
Confidence 478899999999999999987652 11 467877 2 346899999999998632 1 379999
Q ss_pred CchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHH
Q psy15910 254 SAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 311 (404)
Q Consensus 254 ~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~ 311 (404)
+.+|+|++|.+++.|... .++.+|.|+|..+||. +..|++++...+
T Consensus 88 ~Kg~~a~~l~a~~~l~~~----~~~~~v~~~~~~dEE~--------g~~G~~~~~~~~ 133 (347)
T PRK08652 88 AKGGVAAILLALEELGKE----FEDLNVGIAFVSDEEE--------GGRGSALFAERY 133 (347)
T ss_pred hhHHHHHHHHHHHHHhhc----ccCCCEEEEEecCccc--------CChhHHHHHHhc
Confidence 999999999999999753 3456999999999996 456999987653
No 43
>PRK05469 peptidase T; Provisional
Probab=99.04 E-value=1.9e-09 Score=109.76 Aligned_cols=106 Identities=19% Similarity=0.241 Sum_probs=84.6
Q ss_pred hHhHHHHHHHHHHHHHhCCCe-EEEEcccCccCCCCCceeeEEEEEeCCC---CCceEEEEEecCCcCCCC-----C---
Q psy15910 180 IENLLKIFQYIISELKSSGLD-VETDTFSDTVPNFGRLTFTNIIGHVNPT---APRALSLACHYDSKIMAS-----P--- 247 (404)
Q Consensus 180 ~~~~~~a~~yI~~~L~~lG~~-Ve~d~F~~~tp~~G~~~~~NIIa~l~g~---a~~~IVLgAHYDSv~~~d-----~--- 247 (404)
.++..++++||+++|+++|++ ++.+. ..||||+++++ ..+.|+|.+|||++|... +
T Consensus 28 ~~~~~~~a~~l~~~l~~~G~~~~~~~~------------~~~v~~~~~g~~~~~~~~i~l~~H~D~vp~~~~~~~~p~~~ 95 (408)
T PRK05469 28 TEGQWDLAKLLVEELKELGLQDVTLDE------------NGYVMATLPANVDKDVPTIGFIAHMDTAPDFSGKNVKPQII 95 (408)
T ss_pred CHHHHHHHHHHHHHHHHcCCCeEEECC------------CeEEEEEecCCCCCCCCeEEEEEeccCCCCCCCCCCCCEEe
Confidence 356799999999999999996 66654 47999999764 247999999999996411 0
Q ss_pred -----------------------------------CCCC----CCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecC
Q psy15910 248 -----------------------------------FIGA----TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDG 288 (404)
Q Consensus 248 -----------------------------------f~GA----~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdg 288 (404)
..|+ .|+.+|+|++|.+++.|++.. ..++.+|.|+|-.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~--~~~~g~v~~~f~~d 173 (408)
T PRK05469 96 ENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHP--EIKHGDIRVAFTPD 173 (408)
T ss_pred ccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCC--CCCCCCEEEEEecc
Confidence 1255 899999999999999997741 23567999999999
Q ss_pred cccccccCCCCCchhhHHHH
Q psy15910 289 EEAFNEWSAEDSIWGARHLA 308 (404)
Q Consensus 289 EE~F~~W~~~DgL~GSr~la 308 (404)
||. + .|++++.
T Consensus 174 EE~--------g-~Ga~~~~ 184 (408)
T PRK05469 174 EEI--------G-RGADKFD 184 (408)
T ss_pred ccc--------C-CCHHHhh
Confidence 996 5 5888875
No 44
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.04 E-value=4.4e-09 Score=105.20 Aligned_cols=111 Identities=18% Similarity=0.163 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC---------------C
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS---------------P 247 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d---------------~ 247 (404)
+.++++||.++|+++|++++...+. + ..|+++++.+ ..+.|++.+|+|++|..+ +
T Consensus 18 e~~~~~~i~~~l~~~G~~~~~~~~~------~---~~~~~~~~g~-~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg 87 (370)
T TIGR01246 18 DAGCQDIIAERLEKLGFEIEWMHFG------D---TKNLWATRGT-GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDG 87 (370)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEecC------C---CceEEEEecC-CCcEEEEEccccccCCCCccccccCCCCcEEECC
Confidence 4678999999999999998876531 1 3699998744 457899999999998631 1
Q ss_pred ---CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHH
Q psy15910 248 ---FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWE 312 (404)
Q Consensus 248 ---f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~ 312 (404)
..|+.|+..|+|++|.+++.+.+.. .+++.+|.|+|..+||.- +..|++.+.+.+.
T Consensus 88 ~~yGrG~~D~Kgg~a~~l~a~~~l~~~~--~~~~~~v~~~~~~dEE~~-------~~~G~~~~~~~~~ 146 (370)
T TIGR01246 88 KLYGRGAADMKGSLAAFIVAAERFVKKN--PDHKGSISLLITSDEEGT-------AIDGTKKVVETLM 146 (370)
T ss_pred EEEecccccchHHHHHHHHHHHHHHHhc--CCCCCcEEEEEEeccccC-------CCcCHHHHHHHHH
Confidence 3789999999999999998887752 345679999999999951 3469999887553
No 45
>PRK09104 hypothetical protein; Validated
Probab=99.03 E-value=5e-09 Score=108.69 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCC--CCceEEEEEecCCcCCCC-------C-----
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPT--APRALSLACHYDSKIMAS-------P----- 247 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~--a~~~IVLgAHYDSv~~~d-------~----- 247 (404)
+..++++||.++|+++|++++.... .+ ..||++++.+. ..+.|+|.+|+|+||..+ +
T Consensus 41 ~~~~~~~~l~~~l~~~G~~v~~~~~------~~---~~~l~a~~~g~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~ 111 (464)
T PRK09104 41 DCRKAADWLVADLASLGFEASVRDT------PG---HPMVVAHHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRI 111 (464)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEec------CC---CCEEEEEecCCCCCCCEEEEEecccCCCCCCcccCCCCCCcceE
Confidence 4578899999999999999887542 12 36999999753 357899999999987421 1
Q ss_pred -----------CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 -----------FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 -----------f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+..|+|++|++++.|.+.. ..++.+|.|+|..+||. +..|.+++..+
T Consensus 112 ~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~--------g~~g~~~~l~~ 175 (464)
T PRK09104 112 KETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVT--GSLPVRVTILFEGEEES--------GSPSLVPFLEA 175 (464)
T ss_pred ecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhc--CCCCCcEEEEEECcccc--------CCccHHHHHHh
Confidence 2589999999999999999998752 34567899999999996 44577777654
No 46
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.01 E-value=2.7e-09 Score=105.71 Aligned_cols=102 Identities=22% Similarity=0.187 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCC------CC---CCCCCC
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMA------SP---FIGATD 253 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~------d~---f~GA~D 253 (404)
+.++++||+++|+++|++++.+. ..|+++...+ ..+.|++.+|||++|.. ++ ..|+.|
T Consensus 16 e~~~~~~l~~~l~~~g~~~~~~~------------~~~~~~~~~~-~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D 82 (336)
T TIGR01902 16 EANAAKFLEEISKDLGLKLIIDD------------AGNFILGKGD-GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVD 82 (336)
T ss_pred hHHHHHHHHHHHHHcCCEEEECC------------CCcEEEEeCC-CCceEEEEccccccCCCcccEEeCCEEEEecccC
Confidence 57899999999999999985432 3688887643 35789999999999742 12 479999
Q ss_pred CchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHH
Q psy15910 254 SAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 311 (404)
Q Consensus 254 ~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~ 311 (404)
+.+|+|++|++++.|.+. ..+|.|++..+||. +..|++++++.+
T Consensus 83 ~Kg~~aa~l~a~~~l~~~------~~~i~~~~~~dEE~--------g~~G~~~~~~~~ 126 (336)
T TIGR01902 83 AKGPLIAMIFATWLLNEK------GIKVIVSGLVDEES--------SSKGAREVIDKN 126 (336)
T ss_pred CCcHHHHHHHHHHHHHhC------CCcEEEEEEeCccc--------CCccHHHHHhhc
Confidence 999999999999999752 35899999999997 668999988763
No 47
>PRK08554 peptidase; Reviewed
Probab=99.01 E-value=9e-09 Score=106.81 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=86.1
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC------C-------
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS------P------- 247 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d------~------- 247 (404)
.+..++++||.++|+++|++++..... + ..|+++.+. ...+.|+|.+|+|+||..+ +
T Consensus 24 ~~~~~~~~~l~~~l~~~G~~~~~~~~~------~---~~~l~~~~~-~~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~ 93 (438)
T PRK08554 24 KPSKECPKFIKDTLESWGIESELIEKD------G---YYAVYGEIG-EGKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKG 93 (438)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEecC------C---ceEEEEEeC-CCCCEEEEEeccccCCCCccccccCCceeEEEC
Confidence 345789999999999999998765521 1 369999974 3346899999999998631 1
Q ss_pred ----CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHH
Q psy15910 248 ----FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWE 312 (404)
Q Consensus 248 ----f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~ 312 (404)
.+|+.|+.+|+|++|.+++.|.+. .++.+|.|+|..+||. +..|++++...+.
T Consensus 94 g~lyGrG~~DmKgg~aa~l~A~~~l~~~----~~~~~i~l~~~~dEE~--------g~~~~~~~~~~~~ 150 (438)
T PRK08554 94 DKAYGRGSADDKGNVASVMLALKELSKE----PLNGKVIFAFTGDEEI--------GGAMAMHIAEKLR 150 (438)
T ss_pred CEEEECCcccchHHHHHHHHHHHHHHhc----CCCCCEEEEEEccccc--------CccccHHHHHHHH
Confidence 389999999999999999999763 3567899999999996 3345667776654
No 48
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=98.98 E-value=6e-09 Score=105.90 Aligned_cols=115 Identities=19% Similarity=0.161 Sum_probs=93.6
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCC-ceEEEEEecCCcCCCC-------C-----
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAP-RALSLACHYDSKIMAS-------P----- 247 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~-~~IVLgAHYDSv~~~d-------~----- 247 (404)
.++.++++||+++|+++|+.++.+.+.... ...|+++++.+... +.|+|.+|||+||..+ +
T Consensus 31 ~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~------~~~n~~~~~~~~~~~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~ 104 (409)
T COG0624 31 GEEAEAAELLAEWLEELGFEVEEDEVGPGP------GRPNLVARLGGGDGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTI 104 (409)
T ss_pred ccchHHHHHHHHHHHHcCCceEEeecCCCC------CceEEEEEecCCCCCCeEEEeccccccCCCCcccCccCCCccEE
Confidence 557899999999999999999998854221 25699999987654 7999999999999753 2
Q ss_pred ------CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHH
Q psy15910 248 ------FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 311 (404)
Q Consensus 248 ------f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~ 311 (404)
..|+.|+..++++++.+++.+.... ..++.+|.+++..+||. +..|.+++..+.
T Consensus 105 ~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~--~~~~~~v~~~~~~dEE~--------g~~~~~~~~~~~ 164 (409)
T COG0624 105 KDGKLYGRGAADMKGGLAAALYALSALKAAG--GELPGDVRLLFTADEES--------GGAGGKAYLEEG 164 (409)
T ss_pred ECCEEEecCccccchHHHHHHHHHHHHHHhC--CCCCeEEEEEEEecccc--------CCcchHHHHHhc
Confidence 3899999999999999999999842 45779999999999997 335666666554
No 49
>PRK06915 acetylornithine deacetylase; Validated
Probab=98.98 E-value=4.7e-09 Score=107.09 Aligned_cols=117 Identities=17% Similarity=0.065 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCc----cCC-----CCCceeeEEEEEeCCC-CCceEEEEEecCCcCCCC-----
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDT----VPN-----FGRLTFTNIIGHVNPT-APRALSLACHYDSKIMAS----- 246 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~----tp~-----~G~~~~~NIIa~l~g~-a~~~IVLgAHYDSv~~~d----- 246 (404)
++.++++||+++|+++|++++....... .|. .......||||++.+. ..+.|+|.+|+|++|..+
T Consensus 35 ~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~~~~l~l~~H~Dtvp~~~~~~W~ 114 (422)
T PRK06915 35 DESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPNIVATLKGSGGGKSMILNGHIDVVPEGDVNQWD 114 (422)
T ss_pred chHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCceEEEEEcCCCCCCeEEEEeeccccCCCCcccCc
Confidence 3578889999999999999876543210 010 0001248999999764 346899999999998521
Q ss_pred ----------C---CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHH
Q psy15910 247 ----------P---FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLA 308 (404)
Q Consensus 247 ----------~---f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la 308 (404)
+ ..|+.|+.+|+|++|.+++.|++.. ..++.+|.|+|..+||. +..|++.+.
T Consensus 115 ~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~--~~~~~~v~~~~~~dEE~--------g~~G~~~~~ 179 (422)
T PRK06915 115 HHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESG--IELKGDVIFQSVIEEES--------GGAGTLAAI 179 (422)
T ss_pred CCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeccccc--------CCcchHHHH
Confidence 1 3899999999999999999998752 34667899999999995 334776654
No 50
>PRK06837 acetylornithine deacetylase; Provisional
Probab=98.98 E-value=7e-09 Score=106.52 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCc----cCCC-----CCceeeEEEEEeCCCC--CceEEEEEecCCcCCCC----
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDT----VPNF-----GRLTFTNIIGHVNPTA--PRALSLACHYDSKIMAS---- 246 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~----tp~~-----G~~~~~NIIa~l~g~a--~~~IVLgAHYDSv~~~d---- 246 (404)
++.++++||+++|+++|++++....... .+-. ..-...||+|++.+.. .+.|++.+|+|+||..+
T Consensus 38 ~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W 117 (427)
T PRK06837 38 AEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLW 117 (427)
T ss_pred cHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCCceEEEEecCCCCCCCeEEEEeecccCCCCCcccc
Confidence 3578999999999999999876443210 0000 0012589999997642 57899999999998631
Q ss_pred ---C-----------CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc
Q psy15910 247 ---P-----------FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA 291 (404)
Q Consensus 247 ---~-----------f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~ 291 (404)
+ ..|+.|+..|++++|.+++.|++.. ..++.+|.|+|..+||.
T Consensus 118 ~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~ 174 (427)
T PRK06837 118 SRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAG--LAPAARVHFQSVIEEES 174 (427)
T ss_pred ccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcC--CCCCCcEEEEEEecccc
Confidence 2 2599999999999999999998752 35678999999999995
No 51
>PRK08201 hypothetical protein; Provisional
Probab=98.98 E-value=1.1e-08 Score=105.79 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=86.3
Q ss_pred HhHHHHHHHHHHHHHhCCCe-EEEEcccCccCCCCCceeeEEEEEeCCC-CCceEEEEEecCCcCCC-------CC----
Q psy15910 181 ENLLKIFQYIISELKSSGLD-VETDTFSDTVPNFGRLTFTNIIGHVNPT-APRALSLACHYDSKIMA-------SP---- 247 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~-Ve~d~F~~~tp~~G~~~~~NIIa~l~g~-a~~~IVLgAHYDSv~~~-------d~---- 247 (404)
+++.++++||.++|+++|++ ++.+.. .+ ..||++++.+. ..+.|+|.+|+|+||.. +|
T Consensus 37 ~~~~~~a~~l~~~l~~~G~~~~~~~~~------~~---~~~l~a~~~~~~~~~~lll~gH~DvVp~~~~~~W~~dPf~~~ 107 (456)
T PRK08201 37 EDVRKAAEWLAGALEKAGLEHVEIMET------AG---HPIVYADWLHAPGKPTVLIYGHYDVQPVDPLNLWETPPFEPT 107 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEec------CC---CCEEEEEecCCCCCCEEEEEeccCCcCCCchhcccCCCCceE
Confidence 45678999999999999996 666641 12 36899988543 35689999999999842 12
Q ss_pred -------CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 -------FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 -------f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+..|+|++|++++.|.+.. ...+.+|.|++..+||. +..|++.++++
T Consensus 108 ~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~--------g~~g~~~~l~~ 167 (456)
T PRK08201 108 IRDGKLYARGASDDKGQVFMHLKAVEALLKVE--GTLPVNVKFCIEGEEEI--------GSPNLDSFVEE 167 (456)
T ss_pred eECCEEEEEecccCcHHHHHHHHHHHHHHHhc--CCCCCCEEEEEEccccc--------CCccHHHHHHh
Confidence 3799999999999999999997642 34567999999999996 44588877754
No 52
>PRK07205 hypothetical protein; Provisional
Probab=98.97 E-value=7.7e-09 Score=106.71 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=84.8
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC-------C------
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS-------P------ 247 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d-------~------ 247 (404)
++..++.+|+.++|+++|++++.+. .+ .++++++ +...+.|+|.+|+|+||..+ |
T Consensus 38 ~~~~~~~~~~~~~l~~~g~~~~~~~-------~~----~~~~~~~-g~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~ 105 (444)
T PRK07205 38 QAIQDVLEATLDLCQGLGFKTYLDP-------KG----YYGYAEI-GQGEELLAILCHLDVVPEGDLSDWQTPPFEAVEK 105 (444)
T ss_pred hhHHHHHHHHHHHHHhCCCEEEEcC-------CC----eEEEEEe-cCCCcEEEEEEeeccCCCCCcccCCCCCCceEEE
Confidence 3457788999999999999988763 12 3667766 34456899999999998621 2
Q ss_pred -----CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHH
Q psy15910 248 -----FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 309 (404)
Q Consensus 248 -----f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~ 309 (404)
..|+.|+..|+|++|.+++.|.+.. ..++.+|.|+|..+||. +..|+++|.+
T Consensus 106 dg~lyGRGa~DmKgglaa~l~Al~~l~~~~--~~~~~~i~l~~~~dEE~--------g~~g~~~~~~ 162 (444)
T PRK07205 106 DGCLFGRGTQDDKGPSMAALYAVKALLDAG--VQFNKRIRFIFGTDEET--------LWRCMNRYNE 162 (444)
T ss_pred CCEEEECCcccCcHHHHHHHHHHHHHHHcC--CCCCCcEEEEEECCccc--------CcccHHHHHh
Confidence 3899999999999999999998752 45678999999999996 4568888875
No 53
>PRK07318 dipeptidase PepV; Reviewed
Probab=98.96 E-value=5.6e-09 Score=108.59 Aligned_cols=106 Identities=16% Similarity=0.213 Sum_probs=84.9
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeC-CCCCceEEEEEecCCcCCCC-----C-------
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVN-PTAPRALSLACHYDSKIMAS-----P------- 247 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~-g~a~~~IVLgAHYDSv~~~d-----~------- 247 (404)
++..++++||.++|+++|++++.. .|+++++. +...+.|+|.+|+|+||..+ +
T Consensus 43 ~~~~~~~~~l~~~~~~~G~~~~~~--------------~n~~~~~~~~~~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~d 108 (466)
T PRK07318 43 PGPVKALEKFLEIAERDGFKTKNV--------------DNYAGHIEYGEGEEVLGILGHLDVVPAGDGWDTDPYEPVIKD 108 (466)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEEe--------------cCccceEEECCCCCEEEEEEecCCCCCCCCCCCCCcceEEEC
Confidence 456789999999999999988742 35566553 23446899999999998521 1
Q ss_pred ----CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 ----FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 ----f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+.+|+|++|.+++.|++.. ..++.+|.|+|..+||. +.+|++++++.
T Consensus 109 g~lyGRG~~DmKgg~aa~l~Al~~l~~~g--~~~~~~i~l~~~~DEE~--------g~~G~~~l~~~ 165 (466)
T PRK07318 109 GKIYARGTSDDKGPTMAAYYALKIIKELG--LPLSKKVRFIVGTDEES--------GWKCMDYYFEH 165 (466)
T ss_pred CEEEEcccccCcHHHHHHHHHHHHHHHcC--CCCCccEEEEEEccccc--------CchhHHHHHHh
Confidence 3899999999999999999998742 34567899999999997 67899999875
No 54
>PRK08262 hypothetical protein; Provisional
Probab=98.96 E-value=5.5e-09 Score=108.96 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCC--ceEEEEEecCCcCCC---------CC---
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAP--RALSLACHYDSKIMA---------SP--- 247 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~--~~IVLgAHYDSv~~~---------d~--- 247 (404)
...++++||+++|+.+|++++...+. -.|+|+.+.+..+ +.|++.+|+|+||.. ++
T Consensus 71 ~~~~~~~~L~~~~~~~g~~~~~~~~~----------~~~vv~~~~g~~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~ 140 (486)
T PRK08262 71 AFDALHAHLEESYPAVHAALEREVVG----------GHSLLYTWKGSDPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSG 140 (486)
T ss_pred HHHHHHHHHHHhChhhhceeEEEEEC----------CccEEEEEECCCCCCCeEEEECcccccCCCCCCcccCccCCCce
Confidence 34568999999999999988876531 2578888865432 689999999999863 11
Q ss_pred --------CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHh
Q psy15910 248 --------FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWER 313 (404)
Q Consensus 248 --------f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~ 313 (404)
..|+.|+.+|+|++|.+++.|.+.. ..++.+|.|+|..+||. +..|++++.+.+..
T Consensus 141 ~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~--~~l~~~I~llf~~dEE~--------g~~G~~~l~~~l~~ 204 (486)
T PRK08262 141 VIADGYVWGRGALDDKGSLVAILEAAEALLAQG--FQPRRTIYLAFGHDEEV--------GGLGARAIAELLKE 204 (486)
T ss_pred EeeCCEEEecCccccchhHHHHHHHHHHHHHcC--CCCCCeEEEEEeccccc--------CCcCHHHHHHHHHH
Confidence 3699999999999999999998752 35678999999999996 45599999977654
No 55
>PRK06156 hypothetical protein; Provisional
Probab=98.94 E-value=1.2e-08 Score=107.88 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeE-EE-EEeCCCCCceEEEEEecCCcCCC-----------CC--
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTN-II-GHVNPTAPRALSLACHYDSKIMA-----------SP-- 247 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~N-II-a~l~g~a~~~IVLgAHYDSv~~~-----------d~-- 247 (404)
..+.++||.++|+++|++++. ..| |+ +++++..++.|+|.+|+|+||.. ++
T Consensus 74 ~~~~~~~l~~~l~~~G~~~~~--------------~~~~v~~~~~~g~~~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~ 139 (520)
T PRK06156 74 FIGFKKLLKSLARDFGLDYRN--------------VDNRVLEIGLGGSGSDKVGILTHADVVPANPELWVLDGTRLDPFK 139 (520)
T ss_pred HHHHHHHHHHHHHHCCCeEEe--------------cCCeEEEEEecCCCCCeEEEEEecCccCCCCccCccCCccCCCCc
Confidence 356679999999999998743 134 44 67765556789999999999852 22
Q ss_pred ---------CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 ---------FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 ---------f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+..|+|++|.+++.|.+.. .+++.+|.|+|..+||. +..|++++...
T Consensus 140 ~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~--------g~~G~~~~~~~ 201 (520)
T PRK06156 140 VTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSG--LPLARRIELLVYTTEET--------DGDPLKYYLER 201 (520)
T ss_pred eEEECCEEEEcCcccchHHHHHHHHHHHHHHHcC--CCCCceEEEEEeccccc--------CchhHHHHHHh
Confidence 3799999999999999999997752 35567999999999997 66799998764
No 56
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=98.94 E-value=1.3e-08 Score=102.88 Aligned_cols=112 Identities=25% Similarity=0.257 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHhCCCe-EEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCC---------------
Q psy15910 182 NLLKIFQYIISELKSSGLD-VETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMA--------------- 245 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~-Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~--------------- 245 (404)
++.++++||.++|+++|+. ++.+.+ + .||||++.+...+.|+|.+|+|+||..
T Consensus 14 ~e~~~~~~i~~~l~~~g~~~~~~~~~-------~----~nvva~~~~~~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~ 82 (373)
T TIGR01900 14 HEGPIADEIEAALNNLELEGLEVFRF-------G----DNVLARTDFGKASRVILAGHIDTVPIADNFPPKWLEPGDSLI 82 (373)
T ss_pred hHHHHHHHHHHHHhhccccCceEEEE-------C----CEEEEecCCCCCCeEEEeCccccccCCCCChhhhccCccccc
Confidence 4578999999999998643 333331 1 499999864445689999999999741
Q ss_pred ----------CC---CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 246 ----------SP---FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 246 ----------d~---f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
++ ..|+.|+.+|+|++|.+++.|.+......++.+|.|+|..+||.-. +..|+++++..
T Consensus 83 ~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~------~~~G~~~~~~~ 154 (373)
T TIGR01900 83 REEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAA------EKNGLGHIRDA 154 (373)
T ss_pred ccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccC------CCCCHHHHHHh
Confidence 11 4799999999999999999996421113467799999999999510 12488888764
No 57
>PRK07079 hypothetical protein; Provisional
Probab=98.93 E-value=2.1e-08 Score=104.33 Aligned_cols=109 Identities=17% Similarity=0.045 Sum_probs=82.5
Q ss_pred HHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCC-CCceEEEEEecCCcCCC--------CC-----------
Q psy15910 188 QYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPT-APRALSLACHYDSKIMA--------SP----------- 247 (404)
Q Consensus 188 ~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~-a~~~IVLgAHYDSv~~~--------d~----------- 247 (404)
+||.++|+++|++++...... + .+ ..||++++.+. ..+.|+|.+|+|+||.. ++
T Consensus 48 ~~~~~~l~~~G~~~~~~~~~~--~-~~---~~~vva~~~~~~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~ly 121 (469)
T PRK07079 48 DEIAPALAALGFTCRIVDNPV--A-GG---GPFLIAERIEDDALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWY 121 (469)
T ss_pred HHHHHHHHHCCCeEEEEecCC--C-CC---CCEEEEEeCCCCCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEE
Confidence 444568999999988754210 1 11 47999998654 34789999999999841 32
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHH
Q psy15910 248 FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 311 (404)
Q Consensus 248 f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~ 311 (404)
..|+.|+++|+|++|.+++.|.+.. +..+..+|.|++..+||. +..|++.+++..
T Consensus 122 GRGa~DmKgg~aa~l~A~~~l~~~~-~~~~~~~i~~~~~~dEE~--------g~~G~~~l~~~~ 176 (469)
T PRK07079 122 GRGTADNKGQHTINLAALEQVLAAR-GGRLGFNVKLLIEMGEEI--------GSPGLAEVCRQH 176 (469)
T ss_pred EEeccCCcHHHHHHHHHHHHHHHhc-CCCCCCCEEEEEECcccc--------CCccHHHHHHHh
Confidence 3799999999999999999986531 135678999999999996 567999998764
No 58
>PRK13004 peptidase; Reviewed
Probab=98.92 E-value=1e-08 Score=104.09 Aligned_cols=106 Identities=19% Similarity=0.258 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhCCCeEE-EEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC-------C-------
Q psy15910 183 LLKIFQYIISELKSSGLDVE-TDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS-------P------- 247 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve-~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d-------~------- 247 (404)
+.++++||.++|+++|+++. .+. ..|++|++.+.. +.|++.+|+|++|..+ +
T Consensus 34 e~~~a~~l~~~l~~~G~~~~~~~~------------~~n~~a~~~~~~-~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~ 100 (399)
T PRK13004 34 EKRVVKRIKEEMEKVGFDKVEIDP------------MGNVLGYIGHGK-KLIAFDAHIDTVGIGDIKNWDFDPFEGEEDD 100 (399)
T ss_pred hHHHHHHHHHHHHHcCCcEEEEcC------------CCeEEEEECCCC-cEEEEEeccCccCCCChhhcccCCCccEEEC
Confidence 57789999999999999743 222 368999987643 7899999999999631 1
Q ss_pred ----CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 ----FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 ----f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+.+|+|++|.+++.|++.. ..++.+|.|+|..+||.. +-.|++++++.
T Consensus 101 g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~--~~~~~~i~~~~~~~EE~~-------~g~~~~~~~~~ 158 (399)
T PRK13004 101 GRIYGRGTSDQKGGMASMVYAAKIIKDLG--LDDEYTLYVTGTVQEEDC-------DGLCWRYIIEE 158 (399)
T ss_pred CEEEeCCccccchHHHHHHHHHHHHHhcC--CCCCCeEEEEEEcccccC-------cchhHHHHHHh
Confidence 3699999999999999999998752 346789999999999952 23477776653
No 59
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=98.92 E-value=1.7e-08 Score=101.16 Aligned_cols=104 Identities=23% Similarity=0.309 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCC-CCceEEEEEecCCcCCCC----CC--------
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPT-APRALSLACHYDSKIMAS----PF-------- 248 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~-a~~~IVLgAHYDSv~~~d----~f-------- 248 (404)
.+.++++||.++|+++|++++... .+ ..|+|+++.+. ..+.|+|.+|+|+||..+ +|
T Consensus 17 ~E~~~a~~l~~~l~~~g~~~~~~~-------~~---~~~vva~~~~~~~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l 86 (363)
T TIGR01891 17 EEFKTSSLIAEALESLGIEVRRGV-------GG---ATGVVATIGGGKPGPVVALRADMDALPIQEQTDLPYKSTNPGVM 86 (363)
T ss_pred chHHHHHHHHHHHHHcCCceEecC-------CC---CcEEEEEEeCCCCCCEEEEEeccCCCCcccccCCCcccCCCCce
Confidence 357899999999999999987631 01 37999999764 347899999999998421 12
Q ss_pred --CCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHH
Q psy15910 249 --IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 309 (404)
Q Consensus 249 --~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~ 309 (404)
.|+ .+++|++|.+++.|++.. ..++.+|.|+|..+||. + .|++++.+
T Consensus 87 ~g~G~---~~~~a~~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~--------~-~G~~~~~~ 135 (363)
T TIGR01891 87 HACGH---DLHTAILLGTAKLLKKLA--DLLEGTVRLIFQPAEEG--------G-GGATKMIE 135 (363)
T ss_pred ecCcC---HHHHHHHHHHHHHHHhch--hhCCceEEEEEeecCcC--------c-chHHHHHH
Confidence 333 367899999998887642 34567999999999995 3 59988764
No 60
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=98.92 E-value=7.1e-09 Score=103.25 Aligned_cols=99 Identities=20% Similarity=0.158 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCC------CC---CCCCC
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMA------SP---FIGAT 252 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~------d~---f~GA~ 252 (404)
++.++++||.++|+++|++++.+. ..|++. .+ .+.|+|.+|+||||.. ++ ..|+.
T Consensus 28 ~e~~~~~~l~~~l~~~g~~~~~~~------------~~~~~~--~g--~~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~ 91 (346)
T PRK00466 28 NETNATKFFEKISNELNLKLEILP------------DSNSFI--LG--EGDILLASHVDTVPGYIEPKIEGEVIYGRGAV 91 (346)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEec------------CCCcEe--cC--CCeEEEEeccccCCCCCCceeeCCEEEecCcc
Confidence 457899999999999999988765 245553 23 2479999999999852 11 48999
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 253 DSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 253 D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
|+..|+|++|.+++.|.+. ..+|.|+|..+||. +..|++++++.
T Consensus 92 DmKgg~aa~l~a~~~l~~~------~~~i~~~~~~dEE~--------g~~G~~~l~~~ 135 (346)
T PRK00466 92 DAKGPLISMIIAAWLLNEK------GIKVMVSGLADEES--------TSIGAKELVSK 135 (346)
T ss_pred ccchHHHHHHHHHHHHHHc------CCCEEEEEEcCccc--------CCccHHHHHhc
Confidence 9999999999999999763 24689999999996 55699998754
No 61
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=98.92 E-value=1.2e-08 Score=107.49 Aligned_cols=115 Identities=26% Similarity=0.312 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCC----CCCceEEEEEecCCcCCCC----------C-
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNP----TAPRALSLACHYDSKIMAS----------P- 247 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g----~a~~~IVLgAHYDSv~~~d----------~- 247 (404)
+.++++||.++++++|++++.|. .+|+++++++ ...+.|+|.+|+|+|+..+ +
T Consensus 29 e~~~~~~l~~~~~~~G~~~~~d~------------~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~ 96 (485)
T PRK15026 29 EEQLAEYIVGWAKEKGFHVERDQ------------VGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPI 96 (485)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEe------------cCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCc
Confidence 46899999999999999999886 5799998753 2356899999999997531 1
Q ss_pred ----------CCCCC---CCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHhh
Q psy15910 248 ----------FIGAT---DSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERS 314 (404)
Q Consensus 248 ----------f~GA~---D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~~ 314 (404)
..|++ |+++|+|++|.++ .+. .....+|.++|..+||. ++.||+++...+
T Consensus 97 ~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~---~~~~~~i~~l~t~dEE~--------G~~ga~~l~~~~--- 159 (485)
T PRK15026 97 QPYIDGEWVKARGTTLGADNGIGMASALAVL---ADE---NVVHGPLEVLLTMTEEA--------GMDGAFGLQSNW--- 159 (485)
T ss_pred eEEEcCCEEEeCCccccCccHHHHHHHHHHH---HhC---CCCCCCEEEEEEccccc--------CcHhHHHhhhcc---
Confidence 26874 9999999998875 322 22366899999999997 788999874321
Q ss_pred hccccCccccccCCccEEEEeccC
Q psy15910 315 HLQHRGKTLTKLDRMDMLVLLDLL 338 (404)
Q Consensus 315 ~~p~~~~~~~~l~~I~~~IlLDmI 338 (404)
.+.+++|++|.-
T Consensus 160 ------------~~~~~~i~~e~~ 171 (485)
T PRK15026 160 ------------LQADILINTDSE 171 (485)
T ss_pred ------------CCcCEEEEeCCC
Confidence 235778888764
No 62
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=98.81 E-value=3.5e-08 Score=103.04 Aligned_cols=106 Identities=17% Similarity=0.216 Sum_probs=83.1
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeC-CCCCceEEEEEecCCcCCCC-----C-------
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVN-PTAPRALSLACHYDSKIMAS-----P------- 247 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~-g~a~~~IVLgAHYDSv~~~d-----~------- 247 (404)
++..++.+|+.++|+++|++++... |+++.+. +...+.|++.+|+|+||..+ |
T Consensus 42 ~~~~~~~~~~~~~~~~~G~~~~~~~--------------~~~~~~~~~~~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~d 107 (466)
T TIGR01886 42 PGPVDALTKFLSFAERDGFTTKNFD--------------NYAGHVEYGAGDERLGIIGHMDVVPAGEGWTRDPFEPEIDE 107 (466)
T ss_pred hhHHHHHHHHHHHHHHCCCeEEEec--------------CCceeEEecCCCCEEEEEeecccCCCCCCCcCCCCCeEEEC
Confidence 4567799999999999999987532 2333222 23456899999999998631 1
Q ss_pred ----CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 ----FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 ----f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|+..|+|++|.+++.|++.. ..++.+|.|+|..+||. +..|+++++++
T Consensus 108 g~lyGRG~~D~Kg~~~a~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~--------g~~g~~~~~~~ 164 (466)
T TIGR01886 108 GRIYARGASDDKGPSLAAYYAMKILKELG--LPPSKKIRFVVGTNEET--------GWVDMDYYFKH 164 (466)
T ss_pred CEEEecCccccchHHHHHHHHHHHHHHhC--CCCCCCEEEEEECcccc--------CcccHHHHHhc
Confidence 4899999999999999999998752 45688999999999996 56799998864
No 63
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=98.80 E-value=5.6e-08 Score=101.24 Aligned_cols=106 Identities=19% Similarity=0.186 Sum_probs=82.3
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeC-CCCCceEEEEEecCCcCCC-----C--------
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVN-PTAPRALSLACHYDSKIMA-----S-------- 246 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~-g~a~~~IVLgAHYDSv~~~-----d-------- 246 (404)
++..++.+||.++|+++|++++. ..|+++... +...+.|+|.+|+|+||.. +
T Consensus 31 ~~~~~~~~~l~~~~~~~g~~~~~--------------~~~~~~~~~~~~~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~ 96 (447)
T TIGR01887 31 EGPKKALDKFLELAKRDGFTTEN--------------VDNYAGYAEYGQGEEYLGILGHLDVVPAGDGWTSPPFEAEIKD 96 (447)
T ss_pred hhHHHHHHHHHHHHHHcCceEEE--------------ecCceEEEEeCCCCCeEEEEeecCCCCCCCCCcCCCCceEEEC
Confidence 34578999999999999998873 234444322 2334689999999999842 1
Q ss_pred C---CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 247 P---FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 247 ~---f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
+ ..|+.|+..|++++|.+++.|.+.. .+++.+|.|+|..+||. ++.|++++...
T Consensus 97 g~lyGRGa~D~KG~laa~l~a~~~l~~~~--~~~~~~i~~~~~~dEE~--------g~~g~~~~l~~ 153 (447)
T TIGR01887 97 GRIYGRGTLDDKGPTIAALYAMKILKELG--LKLKKKIRFIFGTDEET--------GWACIDYYFEH 153 (447)
T ss_pred CEEEECCcccCcHHHHHHHHHHHHHHHcC--CCCCCcEEEEEECCccc--------CcHhHHHHHHh
Confidence 1 4899999999999999999998752 35678999999999997 67799888753
No 64
>PRK09961 exoaminopeptidase; Provisional
Probab=98.74 E-value=9.8e-08 Score=96.64 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCC------C---------
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMA------S--------- 246 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~------d--------- 246 (404)
.+.+++++|+++|+++|.+++.|. .+|+||++.+...+.|+|.||+|++++- +
T Consensus 18 ~E~~v~~~i~~~l~~~~~~v~~D~------------~Gnvi~~~~g~~~~~v~l~aHmDevg~~V~~I~~~G~l~~~~vG 85 (344)
T PRK09961 18 SEQEVRQILLEEADRLQKEVRFDG------------LGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVG 85 (344)
T ss_pred ChHHHHHHHHHHHHhhCCEEEECC------------CCCEEEEEcCCCCCEEEEEeccceeceEEEEECCCceEEEEeCC
Confidence 357899999999999999998876 6999999877545689999999999851 1
Q ss_pred ------------------C--------------------------------------------------------CCCCC
Q psy15910 247 ------------------P--------------------------------------------------------FIGAT 252 (404)
Q Consensus 247 ------------------~--------------------------------------------------------f~GA~ 252 (404)
+ .--|.
T Consensus 86 G~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~~~~~~~~i~gkal 165 (344)
T PRK09961 86 NVRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAF 165 (344)
T ss_pred CccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEcceeEEecCCEEEEeec
Confidence 0 02355
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHhhhccccCccccccCCccEE
Q psy15910 253 DSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDML 332 (404)
Q Consensus 253 D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~~~~p~~~~~~~~l~~I~~~ 332 (404)
||-+||+++||+++.+++ .+++.++.++|+..||. |+.||+..+..+ +.+.+
T Consensus 166 DnR~g~~~lle~l~~l~~----~~~~~~v~~~~tvqEEv--------G~rGa~~aa~~i----------------~pd~~ 217 (344)
T PRK09961 166 DDRLGCYLLVTLLRELHD----AELPAEVWLVASSSEEV--------GLRGGQTATRAV----------------SPDVA 217 (344)
T ss_pred hhhHhHHHHHHHHHHhhh----cCCCceEEEEEEccccc--------chHHHHHHHhcc----------------CCCEE
Confidence 666999999999999976 35678999999999998 888998877553 24668
Q ss_pred EEeccCCCC
Q psy15910 333 VLLDLLGTS 341 (404)
Q Consensus 333 IlLDmIG~~ 341 (404)
|.+|..-.+
T Consensus 218 I~vDv~~~~ 226 (344)
T PRK09961 218 IVLDTACWA 226 (344)
T ss_pred EEEeccCCC
Confidence 888876443
No 65
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=98.73 E-value=9.8e-08 Score=96.89 Aligned_cols=94 Identities=22% Similarity=0.320 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhCCCeE-EEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC-------C-------
Q psy15910 183 LLKIFQYIISELKSSGLDV-ETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS-------P------- 247 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~V-e~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d-------~------- 247 (404)
+.++++||.++|+++|+++ +.+. ..|+++.+. ..++.|+|.+|+|++|..+ +
T Consensus 32 e~~~~~~l~~~l~~~g~~~~~~~~------------~~~v~~~~g-~~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~ 98 (395)
T TIGR03526 32 EGRVALRIKQEMEKLGFDKVEIDP------------MGNVLGYIG-HGPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDE 98 (395)
T ss_pred hHHHHHHHHHHHHHcCCceEEEcC------------CCcEEEEeC-CCCCEEEEEeeccccCCCCcccccCCCCceEEEC
Confidence 4678899999999999974 3332 368999984 4456899999999998521 1
Q ss_pred ----CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc
Q psy15910 248 ----FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA 291 (404)
Q Consensus 248 ----f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~ 291 (404)
..|+.|+..|+|++|.+++.|.+.. ..++.++.|++..+||.
T Consensus 99 g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~--~~~~~~v~~~~~~dEE~ 144 (395)
T TIGR03526 99 EIIYGRGASDQEGGIASMVYAGKIIKDLG--LLDDYTLLVTGTVQEED 144 (395)
T ss_pred CEEEecCccccchhHHHHHHHHHHHHHcC--CCCCceEEEEEeccccc
Confidence 3899999999999999999998751 23556888888888884
No 66
>PLN02693 IAA-amino acid hydrolase
Probab=98.67 E-value=2.5e-07 Score=96.25 Aligned_cols=105 Identities=24% Similarity=0.255 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC-------C---CC-CC
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS-------P---FI-GA 251 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d-------~---f~-GA 251 (404)
+.++.+||.++|+++|++++. .+ + ..|+||++.+...+.|+|.||+|++|..+ + .. -+
T Consensus 66 E~~ta~~i~~~L~~~G~~~~~-~~-------~---~~~via~~g~~~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~ha 134 (437)
T PLN02693 66 EFETSKLIRSELDLIGIKYRY-PV-------A---ITGIIGYIGTGEPPFVALRADMDALPIQEAVEWEHKSKIPGKMHA 134 (437)
T ss_pred hHHHHHHHHHHHHHCCCeeEe-cC-------C---CcEEEEEECCCCCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEEC
Confidence 578899999999999999764 21 1 48999999533457899999999998632 1 11 27
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHH
Q psy15910 252 TDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 309 (404)
Q Consensus 252 ~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~ 309 (404)
+|..+++|++|.+++.|++.. ...+.+|.|+|-.+||. + .|++.+++
T Consensus 135 cGhkg~~A~~l~Aa~~L~~~~--~~~~g~V~~if~pdEE~--------~-~Ga~~~i~ 181 (437)
T PLN02693 135 CGHDGHVAMLLGAAKILQEHR--HHLQGTVVLIFQPAEEG--------L-SGAKKMRE 181 (437)
T ss_pred CcchHHHHHHHHHHHHHHhCc--ccCCceEEEEEEEcccc--------h-hhHHHHHH
Confidence 888889999999999998742 23467899999999995 2 48888765
No 67
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=98.66 E-value=1.3e-07 Score=95.97 Aligned_cols=94 Identities=22% Similarity=0.340 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhCCCeE-EEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC-------C-------
Q psy15910 183 LLKIFQYIISELKSSGLDV-ETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS-------P------- 247 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~V-e~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d-------~------- 247 (404)
+.++++||.++|+++|+++ +.+. ..|++|++. ..++.|++.+|+|++|..+ +
T Consensus 32 e~~~~~~l~~~l~~~G~~~~~~~~------------~~n~~~~~g-~~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~ 98 (395)
T TIGR03320 32 EKRVAERIKEEMEKLGFDKVEIDP------------MGNVLGYIG-HGPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDE 98 (395)
T ss_pred hHHHHHHHHHHHHHhCCcEEEECC------------CCCEEEEeC-CCCcEEEEEecccccCCCCccccccCCCceEEEC
Confidence 4688999999999999974 3322 368999984 4456899999999998521 1
Q ss_pred ----CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc
Q psy15910 248 ----FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA 291 (404)
Q Consensus 248 ----f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~ 291 (404)
..|+.|+..|+|++|.+++.|++.. ..++.+|.|++..+||.
T Consensus 99 g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g--~~~~~~i~~~~~~dEE~ 144 (395)
T TIGR03320 99 EIIYGRGASDQEGGIASMVYAGKIIKDLG--LLDDYTLLVTGTVQEED 144 (395)
T ss_pred CEEEecCccCccchHHHHHHHHHHHHHcC--CCCCceEEEEecccccc
Confidence 3899999999999999999998742 34566888887777884
No 68
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=98.65 E-value=3e-07 Score=93.65 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCC-CCCceEEEEEecCCcCCC------CCC-------
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNP-TAPRALSLACHYDSKIMA------SPF------- 248 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g-~a~~~IVLgAHYDSv~~~------d~f------- 248 (404)
+.++++|++++|+.++.+++.|. .+||||++++ +.++.|+++||+|.+.+- +++
T Consensus 21 E~eVr~~~~~el~~~~~ev~~D~------------lGnlia~~~g~~g~~~imi~AHmDEiG~mV~~I~~~G~Lr~~~IG 88 (355)
T COG1363 21 EEEVRDVLKEELEPLGDEVEVDR------------LGNLIAKKGGKNGPPKVMIAAHMDEIGFMVKEIEDDGFLRFVPIG 88 (355)
T ss_pred HHHHHHHHHHHHHHhCCceEEcC------------CCcEEEEecCCCCCccEEEEeecceeeeeEEEECCCceEEEEEcC
Confidence 57799999999999999999988 7999999998 455679999999998751 100
Q ss_pred --------------------------------------------------------------------------------
Q psy15910 249 -------------------------------------------------------------------------------- 248 (404)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (404)
T Consensus 89 G~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v~~~~~~~~ 168 (355)
T COG1363 89 GWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFVVFDPRFRE 168 (355)
T ss_pred CcChhhccCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEEEEcCceEE
Confidence
Q ss_pred -------CCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHhhhccccCc
Q psy15910 249 -------IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGK 321 (404)
Q Consensus 249 -------~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~~~~p~~~~ 321 (404)
-=|-||-.|||+|||+++.|+ . ..++.++.|+|..-||- |+-||+..+...
T Consensus 169 l~~~~i~skalDdR~gva~lle~lk~l~-~---~~~~~~vy~v~tvqEEV--------GlrGA~~~a~~i---------- 226 (355)
T COG1363 169 LANGRVVSKALDDRAGVAALLELLKELK-G---IELPADVYFVASVQEEV--------GLRGAKTSAFRI---------- 226 (355)
T ss_pred ecCCcEEeeeccchHhHHHHHHHHHHhc-c---CCCCceEEEEEecchhh--------ccchhhcccccc----------
Confidence 126688899999999999994 2 57889999999999998 888998876543
Q ss_pred cccccCCccEEEEeccCCCCCC
Q psy15910 322 TLTKLDRMDMLVLLDLLGTSNP 343 (404)
Q Consensus 322 ~~~~l~~I~~~IlLDmIG~~~p 343 (404)
+-++.|-+|..+..+.
T Consensus 227 ------~pd~aiavd~~~~~d~ 242 (355)
T COG1363 227 ------KPDIAIAVDVTPAGDT 242 (355)
T ss_pred ------CCCEEEEEecccccCC
Confidence 3577888888887654
No 69
>PLN02280 IAA-amino acid hydrolase
Probab=98.60 E-value=6.2e-07 Score=94.53 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC-----------CCCC
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS-----------PFIG 250 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d-----------~f~G 250 (404)
++.++.+||.++|+++|++++... + ..|++|++....++.|++.+|+|++|..+ +..=
T Consensus 115 ~E~~t~~~i~~~L~~~G~~~~~~~--------~---~~~vva~~g~~~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h 183 (478)
T PLN02280 115 EEYKTSELVRSELDRMGIMYRYPL--------A---KTGIRAWIGTGGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMH 183 (478)
T ss_pred cHHHHHHHHHHHHHHCCCeEEecC--------C---CCEEEEEECCCCCCEEEEEEecCCCcccCCCCCCCCCCCCCeEE
Confidence 467899999999999999987632 1 37999998433347899999999999632 1111
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 251 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 251 A~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
++|.-.++|++|.+++.|++.. ...+.+|.|+|-.+||. + .|++++++.
T Consensus 184 ~cGhd~~~A~~l~a~~~L~~~~--~~~~g~V~~if~pdEE~--------g-~Ga~~li~~ 232 (478)
T PLN02280 184 ACGHDAHVAMLLGAAKILKSRE--HLLKGTVVLLFQPAEEA--------G-NGAKRMIGD 232 (478)
T ss_pred eCCCcHHHHHHHHHHHHHHhcc--ccCCceEEEEecccccc--------c-chHHHHHHC
Confidence 3344559999999999998641 34677999999999996 4 499988753
No 70
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=98.57 E-value=6e-07 Score=91.37 Aligned_cols=119 Identities=19% Similarity=0.141 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCC--CCceEEEEEecCCcCCC------C-------
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPT--APRALSLACHYDSKIMA------S------- 246 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~--a~~~IVLgAHYDSv~~~------d------- 246 (404)
.+.+++++|+++|++++.+++.|. .+||||.+.+. ..+.|+|+||+|++++- +
T Consensus 16 ~E~~v~~~i~~~l~~~~~~v~~D~------------~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~~G~l~~~~ 83 (350)
T TIGR03107 16 FEHPIRDYLRQDITPLVDQVETDG------------LGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKPDGTFRVVE 83 (350)
T ss_pred CcHHHHHHHHHHHHhhCCEEEECC------------CCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECCCceEEEEe
Confidence 358899999999999999999998 69999998773 34689999999999851 1
Q ss_pred --------------------C----------------------------------------------------------C
Q psy15910 247 --------------------P----------------------------------------------------------F 248 (404)
Q Consensus 247 --------------------~----------------------------------------------------------f 248 (404)
+ |
T Consensus 84 vGG~~~~~l~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd~v~~~~~~ 163 (350)
T TIGR03107 84 LGGWNPLVVSSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGDVIVPQTET 163 (350)
T ss_pred CCCccccccCCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCCEEEECCCe
Confidence 0 0
Q ss_pred --C---C-----CCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHhhhccc
Q psy15910 249 --I---G-----ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQH 318 (404)
Q Consensus 249 --~---G-----A~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~~~~p~ 318 (404)
. + |.||-+||++|+|++|.|++ .+++.+|.++|...||. |+-||+..+...
T Consensus 164 ~~~~~~~~i~~kalDdR~g~a~l~e~l~~l~~----~~~~~~l~~~~tvqEEv--------G~rGA~~aa~~i------- 224 (350)
T TIGR03107 164 ILTANGKNVISKAWDNRYGVLMILELLESLKD----QELPNTLIAGANVQEEV--------GLRGAHVSTTKF------- 224 (350)
T ss_pred EEEcCCCEEEEeccccHHHHHHHHHHHHHhhh----cCCCceEEEEEEChhhc--------CchhhhhHHhhC-------
Confidence 1 1 67888999999999999986 45778999999999998 889999766543
Q ss_pred cCccccccCCccEEEEeccCCC
Q psy15910 319 RGKTLTKLDRMDMLVLLDLLGT 340 (404)
Q Consensus 319 ~~~~~~~l~~I~~~IlLDmIG~ 340 (404)
+.+..|.+|..-+
T Consensus 225 ---------~pD~aI~vDv~~~ 237 (350)
T TIGR03107 225 ---------NPDIFFAVDCSPA 237 (350)
T ss_pred ---------CCCEEEEEecCCc
Confidence 2467788886543
No 71
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=98.56 E-value=1.6e-07 Score=95.11 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=81.6
Q ss_pred eeEEEEEeCCCCCceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc----cc
Q psy15910 218 FTNIIGHVNPTAPRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA----FN 293 (404)
Q Consensus 218 ~~NIIa~l~g~a~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~----F~ 293 (404)
..|+|+. ++...+.++++||+||.+. |++||-.|++...++++.|... ...+-++.|++||. |.
T Consensus 178 ~y~~Ia~-~~~en~vv~i~AH~DHW~~-----G~tDN~lg~~~AV~~~~~lr~~------~~~~~lv~FtAEE~g~p~~~ 245 (486)
T COG4882 178 DYNVIAV-DGGENGVVLIGAHLDHWYT-----GFTDNILGVAQAVETAGRLRGR------GLAAGLVVFTAEEHGMPGMA 245 (486)
T ss_pred EEEEEEe-cCCCCCceEEeechhhhhh-----cccchhhhHHHHHHHHHHHhhc------CcceeEEEEeccccCCCCCc
Confidence 5788885 5555668999999999855 9999999999999999999863 56788999999995 33
Q ss_pred ccCCCCCchhhHHHHHHHHhhhccccCccccccCCccEEEEeccCCCCCCcc
Q psy15910 294 EWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRF 345 (404)
Q Consensus 294 ~W~~~DgL~GSr~la~~~~~~~~p~~~~~~~~l~~I~~~IlLDmIG~~~p~f 345 (404)
.|+ .-.|||.|.+.|+. .++|.+.||+|.+|...+..
T Consensus 246 sfy---Wa~GSr~~lk~~k~------------~~~v~~~VN~Dv~g~~~lv~ 282 (486)
T COG4882 246 SFY---WAAGSRGLLKESKA------------AEEVEAYVNFDVAGYRCLVA 282 (486)
T ss_pred cee---ecccchHHHhhcCC------------chhhhheeccccccccchhh
Confidence 333 34699998887754 36799999999999987654
No 72
>PRK08737 acetylornithine deacetylase; Provisional
Probab=98.53 E-value=6.7e-07 Score=90.58 Aligned_cols=98 Identities=23% Similarity=0.243 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCC-----C-----------
Q psy15910 184 LKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMAS-----P----------- 247 (404)
Q Consensus 184 ~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d-----~----------- 247 (404)
.++.+||.++|+ |++++.+... .+ ..|+|+.. +. +.|+|.+|+||||..+ +
T Consensus 30 ~~~~~~l~~~l~--g~~~~~~~~~-----~~---~~nli~~~-g~--~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~ly 96 (364)
T PRK08737 30 GGIFDYLRAQLP--GFQVEVIDHG-----AG---AVSLYAVR-GT--PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVI 96 (364)
T ss_pred HHHHHHHHHHhC--CCEEEEecCC-----CC---ceEEEEEc-CC--CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEE
Confidence 678899999996 9998877631 11 46999974 32 5799999999998631 2
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHH
Q psy15910 248 FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310 (404)
Q Consensus 248 f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~ 310 (404)
..|+.|..+|+|++|.+++. +..+|.|+|..+||.- +..|++++...
T Consensus 97 GrGa~DmKg~~aa~l~a~~~---------~~~~v~~~~~~dEE~g-------~~~g~~~~~~~ 143 (364)
T PRK08737 97 GLGVCDIKGAAAALLAAANA---------GDGDAAFLFSSDEEAN-------DPRCVAAFLAR 143 (364)
T ss_pred EECcccchHHHHHHHHHHHc---------cCCCEEEEEEcccccC-------chhhHHHHHHh
Confidence 36999999999999999753 2357999999999961 33688888754
No 73
>KOG2275|consensus
Probab=98.38 E-value=3.7e-06 Score=86.58 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCC--ceEEEEEecCCcCCCC---------------C
Q psy15910 185 KIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAP--RALSLACHYDSKIMAS---------------P 247 (404)
Q Consensus 185 ~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~--~~IVLgAHYDSv~~~d---------------~ 247 (404)
++++|+....+.+|..+..-.+. | + -.+++.++.|+.+ +.|+|.+|.|+||... +
T Consensus 49 a~~~Fl~~~a~~l~l~~~~i~~~---p--~---~~~~l~T~~GS~P~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g 120 (420)
T KOG2275|consen 49 ACADFLKKYAKSLGLTVQKIESE---P--G---KYVLLYTWLGSDPELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDG 120 (420)
T ss_pred HHHHHHHHHHHhcCCceeEEEec---C--c---eeEEEEEeeCCCCCccceeeeccccccCCCcccCccCCccccccCCC
Confidence 88999999999999988544432 2 2 4678888988753 6899999999999631 1
Q ss_pred ---CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHH
Q psy15910 248 ---FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAA 309 (404)
Q Consensus 248 ---f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~ 309 (404)
..||.|..+-+++.||++|.|.... .+++++|-+.|--+||. +|..|.+-+|+
T Consensus 121 ~IyaRGaqD~K~~~va~leAir~L~~~g--~kp~Rti~lsfvpDEEi-------~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 121 NIYARGAQDMKCVGVAYLEAIRNLKASG--FKPKRTIHLSFVPDEEI-------GGHIGMKEFAK 176 (420)
T ss_pred cEEeccccchHhHHHHHHHHHHHHHhcC--CCcCceEEEEecCchhc-------cCcchHHHHhh
Confidence 4799999999999999999998863 67999999999999996 25789999987
No 74
>PRK09864 putative peptidase; Provisional
Probab=98.36 E-value=3.5e-06 Score=86.09 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCC------C----------
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMA------S---------- 246 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~------d---------- 246 (404)
+.++++||+++|+.++.+++.|. .+|+||.. +...+.|+|+||+|.+++- +
T Consensus 19 E~~v~~~l~~~l~~~~dev~~D~------------~GNli~~~-g~~~~kvml~AHmDevG~mV~~I~~~G~l~~~~lGG 85 (356)
T PRK09864 19 EQEVRDILINTLEPCVNEITFDG------------LGSFVARK-GNKGPKVAVVGHMDEVGFMVTHIDESGFLRFTTIGG 85 (356)
T ss_pred hHHHHHHHHHHHHHhCCEEEECC------------CCCEEEEe-CCCCcEEEEEecccccCEEEEEECCCCeEEEEeCCC
Confidence 58899999999999999999988 69999987 4334589999999999851 1
Q ss_pred -----------------C---------------------------------------------------------C----
Q psy15910 247 -----------------P---------------------------------------------------------F---- 248 (404)
Q Consensus 247 -----------------~---------------------------------------------------------f---- 248 (404)
+ |
T Consensus 86 ~~~~~l~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~vGD~v~~~~~~~~l~ 165 (356)
T PRK09864 86 WWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGDFISPEANFACWG 165 (356)
T ss_pred cCccccCCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCCCCEEEECCCcEEEc
Confidence 0 0
Q ss_pred -----CCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHhhhccccCccc
Q psy15910 249 -----IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTL 323 (404)
Q Consensus 249 -----~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~~~~p~~~~~~ 323 (404)
-=|.||-+||++|+|++|.|++ ++.++.++|..-||. |+-||+..+....
T Consensus 166 ~~~i~~kalDnR~g~~~lle~l~~l~~------~~~~vy~v~TvQEEv--------GlrGA~~aa~~i~----------- 220 (356)
T PRK09864 166 EDKVVGKALDNRIGCAMMAELLQTVNN------PEITLYGVGSVEEEV--------GLRGAQTSAEHIK----------- 220 (356)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHHhhc------CCCeEEEEEEcchhc--------chHHHHHHHhcCC-----------
Confidence 2256777999999999999853 568999999999998 8999988765532
Q ss_pred cccCCccEEEEeccC
Q psy15910 324 TKLDRMDMLVLLDLL 338 (404)
Q Consensus 324 ~~l~~I~~~IlLDmI 338 (404)
-+..|.+|..
T Consensus 221 -----PDiaIavDvt 230 (356)
T PRK09864 221 -----PDVVIVLDTA 230 (356)
T ss_pred -----CCEEEEEecc
Confidence 3567888865
No 75
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.30 E-value=2.8e-06 Score=76.09 Aligned_cols=104 Identities=17% Similarity=0.081 Sum_probs=71.5
Q ss_pred EEEEecCCcC----CC-C--------C---CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCC
Q psy15910 234 SLACHYDSKI----MA-S--------P---FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSA 297 (404)
Q Consensus 234 VLgAHYDSv~----~~-d--------~---f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~ 297 (404)
+|.+|||+|| +. + + ..|++|+..|++++|.+++.|.+.. ..++.+|.|+|..+||.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~--~~~~~~i~~~~~~~EE~------ 72 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESG--DDLPGNIIFLFTPDEEI------ 72 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTT--TTCSSEEEEEEESTCCG------
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhcc--ccccccccccccccccC------
Confidence 5889999999 11 1 1 4799999999999999999998642 57889999999999997
Q ss_pred CCCch-hhHHHHHHHHhhhccccCccccccCCccEEEEeccCCCCCCcceecCCCcHHHHHHHHHH
Q psy15910 298 EDSIW-GARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLVGI 362 (404)
Q Consensus 298 ~DgL~-GSr~la~~~~~~~~p~~~~~~~~l~~I~~~IlLDmIG~~~p~f~~~~~~T~~~~~~l~~i 362 (404)
+.. |++++++.... .-.++++++.+|.-+...-. .....++++.+.++
T Consensus 73 --g~~~g~~~l~~~~~~-----------~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~~~ 121 (189)
T PF01546_consen 73 --GSIGGAKHLLEEGAF-----------FGLHPDYVIIGEPTGKGGVG----SDNDPPLVQALQAA 121 (189)
T ss_dssp --TSTTHHHHHHHHCEE-----------EEEEESEEEECECETTSEEE----HCTCHHHHHHHHHH
T ss_pred --CCcchhhhhhhhccc-----------cccccccccccccccccccc----ccccHHHHHHHHHH
Confidence 444 99998875210 11236777766654433211 22345577666544
No 76
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=98.14 E-value=1.8e-05 Score=80.30 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCC-CCceEEEEEecCCcCC
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPT-APRALSLACHYDSKIM 244 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~-a~~~IVLgAHYDSv~~ 244 (404)
.+.++++||.++|+++|.+++.|. .+|+||++++. ..+.|+|+||+|++++
T Consensus 21 ~E~~V~~~l~~~l~~~g~ev~~D~------------~Gnlia~~~g~~~~~~v~l~aHmDevG~ 72 (343)
T TIGR03106 21 FTDAVVRYVAERLEDLGIEYELTR------------RGAIRATLPGREATPARAVVTHLDTLGA 72 (343)
T ss_pred CHHHHHHHHHHHHHHcCCeEEECC------------CeEEEEEECCCCCCCeEEEEEeeccccc
Confidence 357899999999999999999876 69999998773 4468999999999986
No 77
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.66 E-value=0.00011 Score=73.12 Aligned_cols=49 Identities=27% Similarity=0.424 Sum_probs=41.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHH
Q psy15910 251 ATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKW 311 (404)
Q Consensus 251 A~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~ 311 (404)
|.||-+||++|+|++|.|++ ...+.+|.|+|...||. ++.|++..+..+
T Consensus 132 alDdR~g~~~lle~l~~l~~----~~~~~~v~~v~tvqEEv--------G~rGA~~aa~~i 180 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKE----KELDVDVYFVFTVQEEV--------GLRGAKTAAFRI 180 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTT----SS-SSEEEEEEESSCTT--------TSHHHHHHHHHH
T ss_pred eCCchhHHHHHHHHHHHHhh----cCCCceEEEEEEeeeee--------cCcceeeccccc
Confidence 44677999999999999987 45569999999999998 899999888765
No 78
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00027 Score=73.74 Aligned_cols=138 Identities=15% Similarity=0.082 Sum_probs=96.7
Q ss_pred hHhHHHHHHHHHHHHHhCCCe--EEEEcccCccCCCC-CceeeEEEEEeCCC-CCceEEEEEecCCcCCCC---------
Q psy15910 180 IENLLKIFQYIISELKSSGLD--VETDTFSDTVPNFG-RLTFTNIIGHVNPT-APRALSLACHYDSKIMAS--------- 246 (404)
Q Consensus 180 ~~~~~~a~~yI~~~L~~lG~~--Ve~d~F~~~tp~~G-~~~~~NIIa~l~g~-a~~~IVLgAHYDSv~~~d--------- 246 (404)
++++..-+++|...|+++-+= -..|.+.. |+.+ +..-.||+|-+.|. .++.||+.+|||+|...+
T Consensus 26 T~GE~a~ad~l~~vL~~~pYFqehped~~~~--pi~nDpygR~nv~AlVrg~~~k~tvvl~gH~DtV~iedYg~lKd~Af 103 (553)
T COG4187 26 TPGEGAFADRLLGVLGELPYFQEHPEDLWLQ--PIHNDPYGRRNVFALVRGGTSKRTVVLHGHFDTVSIEDYGELKDLAF 103 (553)
T ss_pred CcccccHHHHHHHHHhcCchhhhChHhhccc--CCCCCccccceeEEEEecCCCCceEEEeeccceeecccccchhhhcc
Confidence 366777789999999877431 01111111 1111 22378999999874 568999999999998643
Q ss_pred ------------------------------CCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccC
Q psy15910 247 ------------------------------PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWS 296 (404)
Q Consensus 247 ------------------------------~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~ 296 (404)
+..|+-|+.+|.|+-|.....+.+. ....-+|.|+....||.
T Consensus 104 dp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~---~~~~GNlLf~a~pdEE~----- 175 (553)
T COG4187 104 DPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAAR---TDRQGNLLFMAVPDEEV----- 175 (553)
T ss_pred CHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhC---CCCCCcEEEEeccchhh-----
Confidence 1389999999999999888888764 45677999999999997
Q ss_pred CCCCchhhHHHHHHH---HhhhccccCccccccCCccEEEEeccCCC
Q psy15910 297 AEDSIWGARHLAAKW---ERSHLQHRGKTLTKLDRMDMLVLLDLLGT 340 (404)
Q Consensus 297 ~~DgL~GSr~la~~~---~~~~~p~~~~~~~~l~~I~~~IlLDmIG~ 340 (404)
.--|.+..+..+ ++. .--.+.+.||+|-++.
T Consensus 176 ---~s~G~r~a~~~L~~L~kk----------~~l~~~~~IN~D~~~~ 209 (553)
T COG4187 176 ---ESRGMREARPALPGLKKK----------FDLEYTAAINLDVTSD 209 (553)
T ss_pred ---hcccHHHHHHHHHHHHHh----------hCceEEEEeccccccC
Confidence 344666655433 332 1124778899999875
No 79
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=97.65 E-value=0.00042 Score=71.16 Aligned_cols=166 Identities=17% Similarity=0.203 Sum_probs=87.3
Q ss_pred cccccccCCCCCCccccccchHHHHHHHhc---CCCcccccceeccccccccccChHhHHHHH-HHHHHHHHhCCCeEEE
Q psy15910 128 DVNVLHCIPYPFPSVRTFLNRDFFNERING---GFPKVLIEGIISDNKSALDMNTIENLLKIF-QYIISELKSSGLDVET 203 (404)
Q Consensus 128 ~~~~~~~~~~~~p~~~~~in~~~~~~~l~~---~~~~~~~~gi~r~~~s~~~~~~~~~~~~a~-~yI~~~L~~lG~~Ve~ 203 (404)
..+-||.+.+-.|-- ..++.+.+.+++-. .-.+++ -+|+ .++ .+ +.-|. +-..+.|++--++|.+
T Consensus 40 ~~~nLHvvgYS~Pv~-~~lsl~eL~~Hl~tlp~~PdaIP--Y~Ts-YY~-~~------WGFCl~~~~~~~L~dg~Y~V~I 108 (386)
T PF09940_consen 40 KDNNLHVVGYSVPVD-GTLSLEELKKHLHTLPDQPDAIP--YRTS-YYK-RR------WGFCLSHNQLDALPDGEYEVVI 108 (386)
T ss_dssp TT-GGGB-BT---EE-EEEEHHHHGGGEE--TTSTT--B----B--SSS-----------EE--HHHHHT--SSEEEEEE
T ss_pred cCCceeEeeccccee-eEEeHHHHHhhhccCCCCCCccc--eeee-ccc-CC------cccccCHHHHhhCCCCceEEEE
Confidence 355668887766654 33456667777663 111111 1111 111 11 11111 1122334544577888
Q ss_pred EcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEE
Q psy15910 204 DTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDL 283 (404)
Q Consensus 204 d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~f 283 (404)
|+-.. .|.++.+=++ ++|+.++.|++++|.+|- . -|+|+.||+|+++++|+.|+. .+..++.+|
T Consensus 109 dS~l~----~G~L~ygE~~--ipG~s~~EillsthiCHP-----s-mANdnLSG~~v~~~La~~L~~----~~~rytYRf 172 (386)
T PF09940_consen 109 DSTLE----DGSLTYGEFV--IPGESDEEILLSTHICHP-----S-MANDNLSGPAVLTFLAKWLKQ----LPNRYTYRF 172 (386)
T ss_dssp EEEEE----S-EEEEEEEE--E--SSS-EEEEEEE---------S--TTTTHHHHHHHHHHHHHHTT----S--SSEEEE
T ss_pred eeeec----CCceeEEEEE--ecCCCCCeEEEEEeccCc-----c-cccccccHHHHHHHHHHHHhc----CCcCceEEE
Confidence 76321 3555554444 478888899999999993 2 599999999999999999987 355699999
Q ss_pred EEecCcccccccCCCCCchhhHHHHHHHHhhhccccCccccccCC-ccEEEEeccCCCCCC
Q psy15910 284 IFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDR-MDMLVLLDLLGTSNP 343 (404)
Q Consensus 284 VfFdgEE~F~~W~~~DgL~GSr~la~~~~~~~~p~~~~~~~~l~~-I~~~IlLDmIG~~~p 343 (404)
+|.- ...||-.+..+-. ..+++ |++.++|.++|....
T Consensus 173 lf~P------------eTIGsI~yLskn~-----------~~l~~~v~~G~vLtcvGD~~~ 210 (386)
T PF09940_consen 173 LFVP------------ETIGSITYLSKNL-----------DELKKNVKAGLVLTCVGDDGA 210 (386)
T ss_dssp EEE-------------TTHHHHHHHHH-G-----------GGGGG-EEEEEE--S--SSS-
T ss_pred EEcc------------ccHHHHHHHHHCH-----------HHHhhheeeeEEEEEecCCCC
Confidence 9984 3569987765421 34566 999999999998874
No 80
>KOG2276|consensus
Probab=97.49 E-value=0.0012 Score=68.42 Aligned_cols=131 Identities=16% Similarity=0.176 Sum_probs=92.3
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeC-------CC--CCceEEEEEecCCcCCC--C---
Q psy15910 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVN-------PT--APRALSLACHYDSKIMA--S--- 246 (404)
Q Consensus 181 ~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~-------g~--a~~~IVLgAHYDSv~~~--d--- 246 (404)
..-..+++|++++|+++|..++.-..-..++ ..+-+..++ |+ .++.+++..|||.+|-. +
T Consensus 39 ~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~------~~g~~v~lPpvvl~~~Gsdp~KktvlvYgHlDVqpA~~~DgW~ 112 (473)
T KOG2276|consen 39 LEVRRMADWLRDYLTKLGAPLELVDLGYQSL------PDGQIVPLPPVVLGVLGSDPSKKTVLVYGHLDVQPANLEDGWN 112 (473)
T ss_pred HHHHHHHHHHHHHHHHhCCceeeeecccCCC------CCCcccccChhhhhcccCCCCcceEEEEeeeeeeecCCCCCCc
Confidence 4567889999999999997776644322222 123333333 33 26789999999999863 1
Q ss_pred --C-----------CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHh
Q psy15910 247 --P-----------FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWER 313 (404)
Q Consensus 247 --~-----------f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~ 313 (404)
| ..|++|+..+|+.-+++.+++++.. ...+.+|.|+|=+-||. ||-.+.+...+
T Consensus 113 TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g--~~lpvnv~f~~EgmEEs-----------gS~~L~~l~~~ 179 (473)
T KOG2276|consen 113 TDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLG--IDLPVNVVFVFEGMEES-----------GSEGLDELIEK 179 (473)
T ss_pred CCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhC--ccccceEEEEEEechhc-----------cCccHHHHHHH
Confidence 1 3899999999999999999999863 46889999999999996 55555543332
Q ss_pred hhccccCccccccCCccEEEEecc
Q psy15910 314 SHLQHRGKTLTKLDRMDMLVLLDL 337 (404)
Q Consensus 314 ~~~p~~~~~~~~l~~I~~~IlLDm 337 (404)
..- .-+..++++.+=|.
T Consensus 180 ~kD-------~~~~~vD~vciSdn 196 (473)
T KOG2276|consen 180 EKD-------KFFKDVDFVCISDN 196 (473)
T ss_pred Hhh-------hhhccCCEEEeeCc
Confidence 210 23566777777665
No 81
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=96.79 E-value=0.028 Score=58.49 Aligned_cols=121 Identities=22% Similarity=0.279 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCC-ceEEEEEecCCcCCCC----CCCCCCCC---
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAP-RALSLACHYDSKIMAS----PFIGATDS--- 254 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~-~~IVLgAHYDSv~~~d----~f~GA~D~--- 254 (404)
+-+..+||.+.|+++|+++.... +. -+=|+|++.++.+ +.|.|-|-||..|..+ +|---.++
T Consensus 31 E~~Ta~~i~~~L~~~g~~~~~~~--------~~--~TGvva~~~~g~~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mH 100 (392)
T COG1473 31 EYRTAAYIAEKLEELGFEVVEVG--------GG--KTGVVATLKGGKPGPTIALRADMDALPIQEETGLPFASKNPGVMH 100 (392)
T ss_pred HHHHHHHHHHHHHHcCCeeEecc--------CC--ceEEEEEEcCCCCCCEEEEEeecccCccccccCCCcccCCCCCcc
Confidence 57788999999999999933322 10 1449999986544 5899999999999633 22222222
Q ss_pred ----chHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHhhhccccCccccccCC-c
Q psy15910 255 ----AVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDR-M 329 (404)
Q Consensus 255 ----AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~~~~p~~~~~~~~l~~-I 329 (404)
=.=.|++|-+|+.|++.. ...+.+|+|+|=-+||. +- |++.+++. ..+++ +
T Consensus 101 ACGHD~Hta~lLgaA~~L~~~~--~~~~Gtv~~ifQPAEE~--------~~-Ga~~mi~~-------------G~~~~~v 156 (392)
T COG1473 101 ACGHDGHTAILLGAALALAEHK--DNLPGTVRLIFQPAEEG--------GG-GAKAMIED-------------GVFDDFV 156 (392)
T ss_pred cCCchHHHHHHHHHHHHHHhhh--hhCCcEEEEEecccccc--------cc-cHHHHHhc-------------CCccccc
Confidence 245789999999998753 36789999999999996 22 77776643 34556 7
Q ss_pred cEEEEecc
Q psy15910 330 DMLVLLDL 337 (404)
Q Consensus 330 ~~~IlLDm 337 (404)
|+++-+-.
T Consensus 157 D~v~g~H~ 164 (392)
T COG1473 157 DAVFGLHP 164 (392)
T ss_pred cEEEEecC
Confidence 77666655
No 82
>KOG2657|consensus
Probab=95.95 E-value=0.035 Score=59.21 Aligned_cols=139 Identities=19% Similarity=0.298 Sum_probs=97.6
Q ss_pred CceeeEEEEEeCCC-------C-CceEEEEEecCCcCC-CCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEE
Q psy15910 215 RLTFTNIIGHVNPT-------A-PRALSLACHYDSKIM-ASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIF 285 (404)
Q Consensus 215 ~~~~~NIIa~l~g~-------a-~~~IVLgAHYDSv~~-~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVf 285 (404)
+....||...+.|- . .+.+|..+-+||..+ ++...||.---.|....|..|++|+.+..-...++++.|+|
T Consensus 154 pl~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~ 233 (596)
T KOG2657|consen 154 PLHSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAF 233 (596)
T ss_pred ccCCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEE
Confidence 45578998887652 1 578999999999976 33367887677789999999999976421135789999999
Q ss_pred ecCcccccccCCCCCchhhHHHHHHHHhhhccccCccccccCC---ccEEEEeccCCCCCC-cceecCCC------cHHH
Q psy15910 286 FDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDR---MDMLVLLDLLGTSNP-RFYSYYPP------THKW 355 (404)
Q Consensus 286 FdgEE~F~~W~~~DgL~GSr~la~~~~~~~~p~~~~~~~~l~~---I~~~IlLDmIG~~~p-~f~~~~~~------T~~~ 355 (404)
|.||-- ..+||+.++-.++.-..| ..+++ ||.++-+-.+|.... .++.++.. +..-
T Consensus 234 f~get~--------~ylgS~r~~yeme~gk~p------va~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqt 299 (596)
T KOG2657|consen 234 FNGETL--------DYLGSGRAAYEMENGKFP------VAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQT 299 (596)
T ss_pred eeccee--------eeccchhhhhHhhcCCCC------eeeccCccchheeeecccccccCceEEEEeccchhhhHHHHH
Confidence 999985 567999888777543332 34555 999999999987543 44444441 2333
Q ss_pred HHHHHHHHHHHH
Q psy15910 356 YKQLVGIESRLT 367 (404)
Q Consensus 356 ~~~l~~iE~rL~ 367 (404)
.++|..+|+-++
T Consensus 300 ld~L~~~ekSlr 311 (596)
T KOG2657|consen 300 LDVLDRIEKSLR 311 (596)
T ss_pred HHHHHHHHhccc
Confidence 445555666555
No 83
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=94.33 E-value=0.34 Score=52.06 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=72.8
Q ss_pred eeEEEEEeC-C--CCCceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCcccccc
Q psy15910 218 FTNIIGHVN-P--TAPRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNE 294 (404)
Q Consensus 218 ~~NIIa~l~-g--~a~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~F~~ 294 (404)
..|++|.+. | ...+.|||++-|++.- |. =|..|+|.+|.+||.+++. .--.++|.|++.|.|
T Consensus 3 G~nvy~i~rapR~d~tEaivl~~~~~~~~------~~-~n~~~v~l~lal~~~~~~~---~~wsKDii~l~~~~~----- 67 (504)
T PF04114_consen 3 GTNVYGILRAPRGDGTEAIVLVVPWRDSD------GE-YNAGGVALALALARYFRRQ---SYWSKDIIFLFTDDE----- 67 (504)
T ss_pred ceEEEEEEecCCCCCceeEEEEEecCCCC------cc-cchhhHHHHHHHHHHhhhc---hhhhccEEEEecCCc-----
Confidence 589999986 3 3467999999998742 32 2388999999999999975 345789999987654
Q ss_pred cCCCCCchhhHHHHHHHHhhhccccCc--cccccCCccEEEEeccCCCCCCcc
Q psy15910 295 WSAEDSIWGARHLAAKWERSHLQHRGK--TLTKLDRMDMLVLLDLLGTSNPRF 345 (404)
Q Consensus 295 W~~~DgL~GSr~la~~~~~~~~p~~~~--~~~~l~~I~~~IlLDmIG~~~p~f 345 (404)
..|.+++.+.......+.... -..+-..|.+.|++|.-+.....+
T Consensus 68 ------~~g~~awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v 114 (504)
T PF04114_consen 68 ------LAGMQAWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSV 114 (504)
T ss_pred ------chHHHHHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEE
Confidence 358888877654432111100 001234689999999887654433
No 84
>KOG3566|consensus
Probab=94.13 E-value=0.27 Score=53.33 Aligned_cols=102 Identities=20% Similarity=0.386 Sum_probs=77.1
Q ss_pred HHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeC-C--CCCceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHH
Q psy15910 188 QYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVN-P--TAPRALSLACHYDSKIMASPFIGATDSAVPCAMLLYI 264 (404)
Q Consensus 188 ~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~-g--~a~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLEl 264 (404)
.|+...+++.|.++..+.|..+ | +......||+|.+. | ...+.+|++.-|+.-- |- +-.+++.++.+
T Consensus 92 ~~~~~~~q~FGl~t~~~n~~~~-P-~e~y~G~NvyGilRAPRgdgtEsivl~vP~~~~~------~~--~~~~v~l~lsl 161 (617)
T KOG3566|consen 92 AWAEVSMQEFGLETHTQNYSNG-P-FEEYSGENVYGILRAPRGDGTESIVLVVPYGRSS------GS--NSASVALLLSL 161 (617)
T ss_pred hHHHHHHHHhCccccccCccCC-c-hhhcCCceEEEEEecCCCCCcceEEEEEecccCC------Cc--chhHHHHHHHH
Confidence 5677888888999999998766 6 44455799999996 3 3467999999988742 33 26789999999
Q ss_pred HHHHHHHhhcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHh
Q psy15910 265 ARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWER 313 (404)
Q Consensus 265 Ar~L~~~l~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~ 313 (404)
|+.++.. .--.++|.|+++|++- +|-+++...+.+
T Consensus 162 a~~f~r~---~yWsKDII~v~~d~~~-----------~g~~AwLeaYhd 196 (617)
T KOG3566|consen 162 ADYFSRW---VYWSKDIIFVFTDGPA-----------LGLDAWLEAYHD 196 (617)
T ss_pred HHHhcCC---eeecccEEEEEeCCcc-----------ccHHHHHHHhhc
Confidence 9999874 3467899999998843 477766655443
No 85
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=93.78 E-value=0.44 Score=48.59 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=80.5
Q ss_pred HHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCCCCCceEEEEEecCCcCCCCCCCCCCCCchHHHHHHHHHHHHHHHh
Q psy15910 193 ELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQEL 272 (404)
Q Consensus 193 ~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g~a~~~IVLgAHYDSv~~~d~f~GA~D~AsGvA~LLElAr~L~~~l 272 (404)
+|++-.++|.+|.=.. .|.+.++-.| +.++.+..|+|++|.-+-. =|+|+-||+|++.-+|+.|+..
T Consensus 147 kl~dgdyeVvIDae~~----dG~L~ygefi--~rg~~~~eiLlst~lCHPS------maNdn~SG~all~~lak~l~~~- 213 (435)
T COG4310 147 KLEDGDYEVVIDAEHE----DGSLDYGEFI--HRGTSKDEILLSTYLCHPS------MANDNLSGLALLTFLAKALKSL- 213 (435)
T ss_pred HhhcCCeEEEEecccc----cCceehhhee--ccCCccceeeeeecccChh------hccCccchHHHHHHHHHHHHhc-
Confidence 3555578888887321 3444444333 2466677899999998842 5899999999999999999874
Q ss_pred hcCCCCcCEEEEEecCcccccccCCCCCchhhHHHHHHHHhhhccccCccccccCCccEEEEeccCCCCCC
Q psy15910 273 SQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNP 343 (404)
Q Consensus 273 ~~~~~~~tI~fVfFdgEE~F~~W~~~DgL~GSr~la~~~~~~~~p~~~~~~~~l~~I~~~IlLDmIG~~~p 343 (404)
+..++-+|+|-. ...||-.+..+-. ..+++|+..+.+-.+|..+.
T Consensus 214 ---ktrysYRfvf~P------------~TiGsi~wLsrne-----------e~lkhvk~GlVlsClGD~g~ 258 (435)
T COG4310 214 ---KTRYSYRFVFAP------------ETIGSIVWLSRNE-----------ECLKHVKHGLVLSCLGDGGG 258 (435)
T ss_pred ---cceeeEEEEecc------------cccchhhhHhcch-----------hHHhhhhcceEEEEecCCCC
Confidence 578999998753 2358876544321 34778999999999998653
No 86
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=90.00 E-value=0.63 Score=48.98 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCcee--eE-EEEEeCCCCC--ceEEEEEecCCcCC-------------
Q psy15910 183 LLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTF--TN-IIGHVNPTAP--RALSLACHYDSKIM------------- 244 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~--~N-IIa~l~g~a~--~~IVLgAHYDSv~~------------- 244 (404)
+++...|+.+|++.+|+.++ |.-.. +....... .| +.+++++.-+ +.+-+.+|.|+++.
T Consensus 24 e~~~~p~~~~~~k~~~~~v~-dE~~~--i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~sh~Dt~~d~~~~~v~~~~l~~ 100 (414)
T COG2195 24 EKAVAPSTVGQAKLLGLLVE-DELGN--IGLKKPATAGENYVPAVLQAHLDMVPEIGFISHHDTVPDPIGPNVNPQILKA 100 (414)
T ss_pred ccccccccHHHHHHcCchhh-hhhcc--ccccccccCCCCeeeEEeeccccccccccccccccccccccccccCCceeee
Confidence 46667999999999999985 44211 10000011 22 4455665433 56778899999831
Q ss_pred --C------------------C--------------C--CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecC
Q psy15910 245 --A------------------S--------------P--FIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDG 288 (404)
Q Consensus 245 --~------------------d--------------~--f~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdg 288 (404)
+ + + -.||+ +.+|.|.++.+...+.+... .-+..+|++.|..+
T Consensus 101 ~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD-~kAGia~i~~al~~~~~~~~-~i~h~~i~~g~s~~ 178 (414)
T COG2195 101 TLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGAD-DKAGIAEIMTALSVLREKHP-EIPHGGIRGGFSPD 178 (414)
T ss_pred ccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCc-chhHHHHHHHHHHHHhhcCc-cccccCeEEEecch
Confidence 1 0 1 25554 46888888888888885311 23567999999999
Q ss_pred cccccccCCCCCchhhHHHH
Q psy15910 289 EEAFNEWSAEDSIWGARHLA 308 (404)
Q Consensus 289 EE~F~~W~~~DgL~GSr~la 308 (404)
||. ++.|++++-
T Consensus 179 Ee~--------g~rg~~~~~ 190 (414)
T COG2195 179 EEI--------GGRGAANKD 190 (414)
T ss_pred HHh--------hhhhhhhcc
Confidence 997 667887764
No 87
>PRK02256 putative aminopeptidase 1; Provisional
Probab=86.11 E-value=1 Score=47.96 Aligned_cols=37 Identities=19% Similarity=0.071 Sum_probs=31.2
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc
Q psy15910 249 IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA 291 (404)
Q Consensus 249 ~GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~ 291 (404)
-++-||-+||.+++++.+.+. .++..+.+++||-||.
T Consensus 256 s~rLDNr~~~~~~leal~~~~------~~~~~~~~~~~dqEEV 292 (462)
T PRK02256 256 AYGQDDRVCAYTSLEALLELE------NPEKTAVVLLVDKEEI 292 (462)
T ss_pred ccccccHHHHHHHHHHHHhcc------cCCCeEEEEEEccccc
Confidence 488899999999999987653 2456899999999996
No 88
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=71.46 E-value=4.2 Score=43.43 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=27.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEE-ecCccc
Q psy15910 250 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIF-FDGEEA 291 (404)
Q Consensus 250 GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVf-FdgEE~ 291 (404)
++-||-++|.++|++...+.... ......+.+++ ||-||.
T Consensus 248 ~rlDnr~~~~~~l~al~~~~~~~--~~~~~~~~v~~~~d~EEV 288 (465)
T PTZ00371 248 PRLDNLGSSFCAFKALTEAVESL--GENSSNIRMVCLFDHEEV 288 (465)
T ss_pred ecchhHHHHHHHHHHHHhccccc--cCCCCceEEEEEECCcCC
Confidence 67799999999999998765310 01233455544 999996
No 89
>PRK02813 putative aminopeptidase 2; Provisional
Probab=71.35 E-value=5.5 Score=42.11 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=29.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhcCCCCcCEEEEEecCccc
Q psy15910 250 GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEA 291 (404)
Q Consensus 250 GA~D~AsGvA~LLElAr~L~~~l~~~~~~~tI~fVfFdgEE~ 291 (404)
++-||-++|.++|++.+.+. . +..+.+++||-||.
T Consensus 231 ~~lDnr~~~~~~l~al~~~~------~-~~~~~~~~~d~EEV 265 (428)
T PRK02813 231 GRLDNLSSCHAGLEALLAAA------S-DATNVLAAFDHEEV 265 (428)
T ss_pred ecchhHHHHHHHHHHHHhcC------C-CCeEEEEEEecCcc
Confidence 77899999999999986642 2 57899999999996
No 90
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=42.74 E-value=27 Score=32.77 Aligned_cols=24 Identities=38% Similarity=0.601 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEc
Q psy15910 182 NLLKIFQYIISELKSSGLDVETDT 205 (404)
Q Consensus 182 ~~~~a~~yI~~~L~~lG~~Ve~d~ 205 (404)
.-++++++|..+|++.|.+|+++.
T Consensus 13 qT~kIA~~iA~~L~e~g~qvdi~d 36 (175)
T COG4635 13 QTRKIAEYIASHLRESGIQVDIQD 36 (175)
T ss_pred cHHHHHHHHHHHhhhcCCeeeeee
Confidence 348899999999999999999987
No 91
>PF08854 DUF1824: Domain of unknown function (DUF1824); InterPro: IPR014953 This uncharacterised group of proteins are principally found in cyanobacteria. ; PDB: 2Q22_B.
Probab=40.01 E-value=46 Score=29.73 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhCCCeE--EEEcccCccCCC--CCceeeEEEEEeCCCCCceEEEEEecCCc
Q psy15910 183 LLKIFQYIISELKSSGLDV--ETDTFSDTVPNF--GRLTFTNIIGHVNPTAPRALSLACHYDSK 242 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~V--e~d~F~~~tp~~--G~~~~~NIIa~l~g~a~~~IVLgAHYDSv 242 (404)
..+|..-|++..+++||.. ..+.-....|++ .+...+++..+.....-+-|+++||+|.-
T Consensus 47 ~~~ai~ALr~~~~alg~~~~~~~~~~~~~GpVfLK~N~~tg~~yv~~y~G~~rGVLiScqs~~~ 110 (125)
T PF08854_consen 47 AEEAIAALRSYEQALGYPPLEPLDSPPIEGPVFLKANQKTGSCYVRSYTGLGRGVLISCQSDDD 110 (125)
T ss_dssp HHHHHHHHHHHHHHTT------------SSSEEEEEETTT--EEEEE--S--BEEEEEEE-SST
T ss_pred HHHHHHHHHHHHHHcCCCccCCCCCCCCCCCEEEEecCCCCcEEEeecCCccceEEEEeccCCc
Confidence 4677788888999999986 222111112211 12234566666655556789999999874
No 92
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=36.60 E-value=25 Score=31.96 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.5
Q ss_pred cchhhhhhccCCCCCCCcceeEEecccc
Q psy15910 104 TRDLALTRQTLPTYAGSCTSFVISDVNV 131 (404)
Q Consensus 104 ~~~~~~~~~~~~~~~g~~~~f~i~~~~~ 131 (404)
..|++++|+.| +.+||..+|++++++.
T Consensus 105 d~dI~~~~~~L-~eaGa~~IF~~s~~d~ 131 (148)
T COG4917 105 DADISLVKRWL-REAGAEPIFETSAVDN 131 (148)
T ss_pred hHhHHHHHHHH-HHcCCcceEEEeccCc
Confidence 35677888877 6889999999999887
No 93
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=35.19 E-value=52 Score=30.71 Aligned_cols=39 Identities=10% Similarity=0.168 Sum_probs=30.1
Q ss_pred ChHhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCC
Q psy15910 179 TIENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNP 227 (404)
Q Consensus 179 ~~~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g 227 (404)
+.+..+.|.+.+.+.|+++|+++.... .+..||+|+.+-
T Consensus 65 s~e~a~~a~~~i~~~L~~~g~~~~~~~----------~~v~Nivat~~l 103 (174)
T cd04516 65 SEDDSKLAARKYARIIQKLGFPAKFTD----------FKIQNIVGSCDV 103 (174)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCCc----------eEEEEEEEEEEC
Confidence 446677888999999999999874433 347999999863
No 94
>PLN00062 TATA-box-binding protein; Provisional
Probab=33.20 E-value=59 Score=30.54 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=30.1
Q ss_pred ChHhHHHHHHHHHHHHHhCCCeEEEEcccCccCCCCCceeeEEEEEeCC
Q psy15910 179 TIENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNP 227 (404)
Q Consensus 179 ~~~~~~~a~~yI~~~L~~lG~~Ve~d~F~~~tp~~G~~~~~NIIa~l~g 227 (404)
+.+..+.|.+-+.+.|+++|+++....| +..||+|+.+-
T Consensus 65 s~e~a~~a~~~~~~~L~~lg~~~~~~~f----------~v~NIvas~~l 103 (179)
T PLN00062 65 SEHDSKLAARKYARIIQKLGFPAKFKDF----------KIQNIVGSCDV 103 (179)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcCCCcc----------EEEEEEEEEEC
Confidence 4466677888888999999997665444 37999999863
No 95
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=28.70 E-value=1.2e+02 Score=32.51 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCCCeE--EEEcccCccCCCC----CceeeEEEEEeCCCC-----CceEEEEEecCCcCC
Q psy15910 183 LLKIFQYIISELKSSGLDV--ETDTFSDTVPNFG----RLTFTNIIGHVNPTA-----PRALSLACHYDSKIM 244 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~V--e~d~F~~~tp~~G----~~~~~NIIa~l~g~a-----~~~IVLgAHYDSv~~ 244 (404)
.-.|.+++++.|++.|++- +.+...-. | .| ......|||-.-|+. ....+++||.||--+
T Consensus 22 ~~hav~~~~~~L~~~GF~~l~e~~~w~l~-~-g~kyyv~r~~ssl~Af~vg~~~~~~~~g~~ivgaHtDsP~l 92 (465)
T PTZ00371 22 PFHAVQELKERLKKSGFKQLNEGENWKLE-K-GGKYYLTRNNSTIVAFTVGKKFDAPNGGFKIVGAHTDSPCL 92 (465)
T ss_pred HHHHHHHHHHHHHHCcCEEccccccCccC-C-CCEEEEEcCCcEEEEEEeCCCCccCCCCeEEEEEeccCCCc
Confidence 4567899999999999862 11222211 1 12 233457888764433 357899999999543
No 96
>PRK02813 putative aminopeptidase 2; Provisional
Probab=28.13 E-value=1.3e+02 Score=31.88 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhCCCeE--EEEcccCccCCCC----CceeeEEEEEeCCCC----CceEEEEEecCCcCC
Q psy15910 183 LLKIFQYIISELKSSGLDV--ETDTFSDTVPNFG----RLTFTNIIGHVNPTA----PRALSLACHYDSKIM 244 (404)
Q Consensus 183 ~~~a~~yI~~~L~~lG~~V--e~d~F~~~tp~~G----~~~~~NIIa~l~g~a----~~~IVLgAHYDSv~~ 244 (404)
.-.|.+++++.|++.|++- +.+.... .| .| ......|||-.-|+. ....+++||.||-.+
T Consensus 21 ~~hav~~~~~~L~~~Gf~~l~e~~~w~l-~~-g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~aH~DsP~l 90 (428)
T PRK02813 21 PFHAVANVAQRLEAAGFTELDETDAWKL-EP-GGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGAHTDSPGL 90 (428)
T ss_pred HHHHHHHHHHHHHHcCCeeccccccCcc-CC-CCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEEeccCCCe
Confidence 4567899999999999862 2222211 11 12 233457888765443 357899999999654
No 97
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=21.41 E-value=1.4e+02 Score=27.76 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=30.0
Q ss_pred cChHhHHHHHHHHHHHHHhCCCeEE-EEcccCccCCCCCceeeEEEEEeC
Q psy15910 178 NTIENLLKIFQYIISELKSSGLDVE-TDTFSDTVPNFGRLTFTNIIGHVN 226 (404)
Q Consensus 178 ~~~~~~~~a~~yI~~~L~~lG~~Ve-~d~F~~~tp~~G~~~~~NIIa~l~ 226 (404)
.+.+..+.|.+.+.+.|+++|+.+. .. ..+..||+|+.+
T Consensus 64 ks~~~~~~a~~~~~~~L~~~g~~~~~~~----------~~~v~NIvas~~ 103 (174)
T cd00652 64 KSEEDAKLAARKYARILQKLGFPVEKFP----------EFKVQNIVASCD 103 (174)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccccC----------ceEEEEEEEEEE
Confidence 3456778889999999999998763 22 234799999986
Done!