RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15910
(404 letters)
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein,
metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP:
c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A*
2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A
2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...
Length = 329
Score = 183 bits (464), Expect = 1e-54
Identities = 99/235 (42%), Positives = 139/235 (59%), Gaps = 17/235 (7%)
Query: 181 ENLLKIFQYIISELKSSGLD--VETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACH 238
Q+I+ ++ D +E DTF P +G +F+NII +NPTA R L LACH
Sbjct: 50 PGSYAARQHIMQRIQRLQADWVLEIDTFLSQTP-YGYRSFSNIISTLNPTAKRHLVLACH 108
Query: 239 YDSKIMA----SPFIGATDSAVPCAMLLYIARLMRQELSQLNQ------NLGLDLIFFDG 288
YDSK + F+GATDSAVPCAM+L +AR + ++L L +L L LIFFDG
Sbjct: 109 YDSKYFSHWNNRVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDG 168
Query: 289 EEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSY 348
EEAF WS +DS++G+RHLAAK + + ++L MD+LVLLDL+G NP F ++
Sbjct: 169 EEAFLHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNF 228
Query: 349 YPPTHKWYKQLVGIESRLTARGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFY 403
+P + +W+++L IE L GLL + S + YF+ S V +DDH+PF
Sbjct: 229 FPNSARWFERLQAIEHELHELGLL----KDHSLEGRYFQNYSYGGVIQDDHIPFL 279
Score = 35.1 bits (80), Expect = 0.032
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 26 KNSQHSARTLTDEEIDEITSRVDMAE-FNTVLDPILVERGVGSENHEVVKN 75
+ + H L + +I ++E + L P+L+ER GS +
Sbjct: 7 EKNYHQPAILNSSALRQIAEGTSISEMWQNDLQPLLIERYPGSPGSYAARQ 57
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta
protein, alpha/beta-mixed fold, glutaminyl cyclas
membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X*
3pb8_X* 3pb9_X*
Length = 330
Score = 167 bits (424), Expect = 7e-49
Identities = 91/231 (39%), Positives = 139/231 (60%), Gaps = 16/231 (6%)
Query: 181 ENLLKIFQYIISELKS--SGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACH 238
L++ +++ + L+S +G VE D F+ + P G + F N++ ++P A R L+LACH
Sbjct: 58 PGNLQVRKFLEATLRSLTAGWHVELDPFTASTP-LGPVDFGNVVATLDPRAARHLTLACH 116
Query: 239 YDSKIMA---SPFIGATDSAVPCAMLLYIARLMRQELSQLNQN---LGLDLIFFDGEEAF 292
YDSK+ +PF+GATDSAVPCA+LL +A+ + ELS+ + + L L+F DGEEA
Sbjct: 117 YDSKLFPPGSTPFVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEAL 176
Query: 293 NEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPT 352
EW +DS++G+RHLA E T++ +++ +LLDLLG NP FYS++P T
Sbjct: 177 KEWGPKDSLYGSRHLAQLMES---IPHSPGPTRIQAIELFMLLDLLGAPNPTFYSHFPRT 233
Query: 353 HKWYKQLVGIESRLTARGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFY 403
+W+ +L IE RL LL + +++ YF+ F EDDH+PF
Sbjct: 234 VRWFHRLRSIEKRLHRLNLL----QSHPQEVMYFQPGEPFGSVEDDHIPFL 280
Score = 38.3 bits (88), Expect = 0.003
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 30 HSARTLTDEEIDEITSRVDMAE-FNTVLDPILVERGVGSENHEVVKN 75
+L + + + ++D ++T L P+LV R GS + V+
Sbjct: 19 PLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRK 65
Score = 29.5 bits (65), Expect = 2.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 4 FNTVLDPILVERGVGSENHEVVKN 27
++T L P+LV R GS + V+
Sbjct: 42 WSTYLRPLLVVRTPGSPGNLQVRK 65
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural
genomics, joint CEN structural genomics, JCSG; 1.06A
{Parabacteroides distasonis}
Length = 309
Score = 140 bits (353), Expect = 1e-38
Identities = 48/234 (20%), Positives = 77/234 (32%), Gaps = 32/234 (13%)
Query: 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYD 240
Y+ SELK G V T + +L NIIG +P + + L H+D
Sbjct: 45 AAHKACGDYLASELKRFGAKVYQQEAILTAYDGTKLEARNIIGSFDPENSKRVLLFAHWD 104
Query: 241 SKIMA----------SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 290
S+ + +P GA D LL IAR + Q+ +G+D+IFFD E+
Sbjct: 105 SRPYSDHDPDPSKHRTPLDGADDGGSGVGALLEIARQIGQK----APGIGIDIIFFDAED 160
Query: 291 AFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYP 350
D + L ++ + + +LLD++G N F+
Sbjct: 161 YGTPEFVTDYTPDSWCLGTQFWAKNPH------VPNYTAEYGILLDMVGGKNATFFKEQQ 214
Query: 351 PTHKWYKQLVGIESRLTARGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFYY 404
+ + S R + + DDH
Sbjct: 215 SLRAAAPIVEMVWSAA------------RDLGYGKYFINAAGGAITDDHQYVIS 256
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase,
phosphorylase/hydrolase-like fold, structura genomics;
1.80A {Bacteroides vulgatus atcc 8482}
Length = 314
Score = 135 bits (341), Expect = 7e-37
Identities = 44/227 (19%), Positives = 76/227 (33%), Gaps = 33/227 (14%)
Query: 188 QYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIMA-- 245
+Y+ +L+ G V + L NIIG P + + + L H+DS+ A
Sbjct: 54 EYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYKPESKKRILLCAHWDSRPYADN 113
Query: 246 --------SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE-AFNEWS 296
+P +G D A +LL IAR + + LG+D++FFD E+ E+
Sbjct: 114 DPDPKNHHTPILGVNDGASGVGVLLEIARQ----IQKEQPALGIDIVFFDSEDYGIPEFY 169
Query: 297 AEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWY 356
L +++ + +LLD++G + FY
Sbjct: 170 DGKYKQDTWCLGSQYWARTPH------VQNYNARYGILLDMVGGKDATFYYEGYSARTAR 223
Query: 357 KQLVGIESRLTARGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFY 403
++ I + G DDH+
Sbjct: 224 SEMKKIWKKAHELGYGKYFVKEDG------------GETVDDHIYVN 258
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 8e-08
Identities = 71/420 (16%), Positives = 123/420 (29%), Gaps = 109/420 (25%)
Query: 25 VKNSQHSART-LTDEEIDEITSRVDMAEFNTVLDPILVERGVGSENHEVVKNLMGRGQGG 83
K+ Q ++ L+ EEID I D L L+ + E+V+ +
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-----EEMVQKFVEEVLRI 89
Query: 84 N------RFGNE---PDLFRIKFTPGGNRTRDLALTRQTLPTYAGSCTSFVISDVNVLHC 134
N E P + + +R + Q Y NV
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN---DNQVFAKY------------NV--S 132
Query: 135 IPYPFPSVRTFLNRDFFNERIN----GGFPK-VLIEGIISDNKSALDM------------ 177
P+ +R L + + G K + + K M
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 178 NTIENLLKIFQ---YIISELKSSGLDVETDT---FSDTVPNFGRLTFTN-------IIGH 224
N+ E +L++ Q Y I +S D ++ RL + ++ +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 225 V-NPTAPRALSLACHYDSKIMA-SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLD 282
V N A A +L+C KI+ + F TD +S + ++ L
Sbjct: 253 VQNAKAWNAFNLSC----KILLTTRFKQVTDFLSA---------ATTTHISLDHHSMTLT 299
Query: 283 LIFFDGEEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSN 342
+E + L K+ L R + L + L ++
Sbjct: 300 P-----DE-------------VKSLLLKY----LDCRPQDLPREVLTTNPRRLSIIA--- 334
Query: 343 PRFYSYYPPTHKWYKQLVGIESRLTARGL-LNMVNSNRSKKLTYFREMSTFPVAEDDHLP 401
T +K V + T LN++ +K F +S FP H+P
Sbjct: 335 -ESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVFP--PSAHIP 388
Score = 31.7 bits (71), Expect = 0.45
Identities = 35/257 (13%), Positives = 75/257 (29%), Gaps = 76/257 (29%)
Query: 11 ILV---ERGV---GSENHEVVKNSQHSARTLTDEEIDEITSRV------DMAEFNTVLDP 58
IL+ + V S + H + TLT +E+ + + D+ +P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 59 ILVERGVGSENHEVVKNLMGRGQ-----GGNRFGN---------EPDLFRIKFTPGGNRT 104
+ + E +++ + ++ EP +R F
Sbjct: 328 RRLS-IIA----ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF------- 375
Query: 105 RDLAL-------TRQTLPTY-AGSCTSFVISDVNVLHCIPYPFPSVRTFLNRDFFNER-- 154
L++ L S V+ VN LH + + +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH--------KYSLVEKQPKESTIS 427
Query: 155 INGGFPKVLIEGIISDNKSALDMNTIE--NLLK---------------IFQYIISELKSS 197
I + ++ ++ +N+ AL + ++ N+ K + +I LK+
Sbjct: 428 IPSIYLELKVK---LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 198 GLDVETDTFSDTVPNFG 214
F +F
Sbjct: 485 EHPERMTLFRMVFLDFR 501
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 0.001
Identities = 42/261 (16%), Positives = 75/261 (28%), Gaps = 68/261 (26%)
Query: 118 AGSCTSFVISDVNVLHCIPYPFPSVRTFLNRDFFN-ERINGGFPKVL---IEGIISDNKS 173
A S +S ++ H + P FF ++ F K+L EG +D++
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVP--------TASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 174 ALDMNTIENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGR--LTFTNI---IGHVNPT 228
E + K Y+ S ++ S + + + F L +I +
Sbjct: 55 T---TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 229 APRALS-----LACHYDSKIMA-SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLD 282
L + + ++IMA PF ++SA L N L
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSA-----LFRAVG---------EGNAQLV 157
Query: 283 LIFFDG-----EEAFNEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDL 337
IF G ++ F E L ++ L + L
Sbjct: 158 AIF--GGQGNTDDYFEE------------LRDLYQTY--HVLVGDL--IKFSAE--TLSE 197
Query: 338 LGTSNPRFYSYYP---PTHKW 355
L + + +W
Sbjct: 198 LIRTTLDAEKVFTQGLNILEW 218
Score = 28.5 bits (63), Expect = 6.1
Identities = 31/193 (16%), Positives = 50/193 (25%), Gaps = 75/193 (38%)
Query: 62 ERGVGSE---NHEVVKNLMGRG--QGGNRFG--------NEPDLFRIKFT-PGGNRTRDL 107
E+G+G + + +++ R + +G N P I F G R R+
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 108 ALTRQTLPTYAGSCTSFVISDVNVLHCIPYPFPSVRTFLNRDFFNERINGGFPKVLIEGI 167
Y T ++ E+I +
Sbjct: 1688 -----------------------------YSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 168 ISDNKSALDMNTIEN----LLKIFQY-IISELKSSGLDVETDTFSDTVPNFGRLTFTNII 222
K L T + L + + +LKS GL TF+
Sbjct: 1719 FRSEKGLLSA-T-QFTQPALT-LMEKAAFEDLKSKGLIPADATFA--------------- 1760
Query: 223 GHVNPTAPRALSL 235
GH SL
Sbjct: 1761 GH---------SL 1764
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution,
hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4
PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A
1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A
3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...
Length = 299
Score = 38.2 bits (89), Expect = 0.003
Identities = 31/223 (13%), Positives = 69/223 (30%), Gaps = 42/223 (18%)
Query: 188 QYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAP--RALSLACHYDSKIMA 245
+I SE ++ + + + +++ + + + + H DS I +
Sbjct: 47 DWIASEWQALSASLPNASVKQVSHS--GYNQKSVVMTITGSEAPDEWIVIGGHLDSTIGS 104
Query: 246 SPFI-----GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDS 300
GA D A A + + R++ + Q ++ + + + EE
Sbjct: 105 HTNEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRS--IAFMAYAAEEV--------G 154
Query: 301 IWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPTHKWYKQLV 360
+ G++ LA +++ L LD+ Y + + +
Sbjct: 155 LRGSQDLANQYKSEGKNVVS----------ALQ-LDMTN---------YKGSAQDVVFIT 194
Query: 361 GIESRLTARGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFY 403
+ L + LTY T A DH ++
Sbjct: 195 DYTDSNFTQ-YLTQLMDEYLPSLTY--GFDTCGYACSDHASWH 234
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A
{Aneurinibacillus SP} PDB: 2ek9_A*
Length = 421
Score = 37.8 bits (87), Expect = 0.006
Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 31/164 (18%)
Query: 191 ISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALS-----LACHYDSKIMA 245
++ +G + LT N+I P A + + + H+DS +
Sbjct: 177 LAANLRAGEKITATVKVAGA-EVKTLTSHNVIATKKPDANKKNTNDIIIIGSHHDS-VEK 234
Query: 246 SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGAR 305
+P GA D A A+ L +AR+ +S+L + L I F E E+ + G++
Sbjct: 235 AP--GANDDASGVAVTLELARV----MSKLKTDTELRFITFGAE--------ENGLIGSK 280
Query: 306 HLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYY 349
AA + ++ R + LD++G+ + Y
Sbjct: 281 KYAASL----------SEDEIKRTIGMFQLDMVGSKDAGDLIMY 314
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Length = 444
Score = 35.2 bits (80), Expect = 0.035
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 212 NFGRLTFTNIIGHVNPTAPRA--LSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMR 269
G T N+I V + + + H DS + GA D A++ A+ +
Sbjct: 229 RRGETTSYNVIAEVKGSTKADEIVLIGAHLDSWDEGT---GAIDDGAGVAIVTAAAKHIL 285
Query: 270 QELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAKWER 313
+ + + ++ + E E A+ A+ E+
Sbjct: 286 DLPQKPER--TIRVVLYAAE----ELGLLGGKTYAKEHEAELEK 323
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 33.6 bits (78), Expect = 0.11
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 29 QHSARTLTDEEIDEITSRV 47
Q ++RTL +EEI ++
Sbjct: 763 QDTSRTLEEEEIAATVAKC 781
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 33.6 bits (78), Expect = 0.13
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 29 QHSARTLTDEEIDEITSRV 47
+H RTL DEE++E SRV
Sbjct: 750 RHPKRTLRDEEVEEAVSRV 768
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 33.2 bits (77), Expect = 0.14
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 29 QHSARTLTDEEIDEITSRV 47
+ TLTDE + +I ++
Sbjct: 766 LDTEDTLTDERVSKIHDKI 784
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A
{Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 32.7 bits (75), Expect = 0.19
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 22/124 (17%)
Query: 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYD 240
E + ++ +ELK+ G V + NI+G + + L L H D
Sbjct: 39 EGIAAAGNFLEAELKNLGFTVTRS---KSAGLVVG---DNIVGKIKGRGGKNLLLMSHMD 92
Query: 241 -----SKIMASPFI---------GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFF 286
+ +PF G D A++L+ +L+++ + + ++F
Sbjct: 93 TVYLKGILAKAPFRVEGDKAYGPGIADDKGGNAVILHTLKLLKE--YGVRDYGTITVLFN 150
Query: 287 DGEE 290
EE
Sbjct: 151 TDEE 154
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function,
protease, thermophilic, SELF-compartmentalising,
hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2wzn_A
2pe3_A
Length = 354
Score = 32.3 bits (74), Expect = 0.25
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 24/84 (28%)
Query: 168 ISDNKSALDMNTIENLLKIF-----------QYIISELKSSGLDVETDTFSDTVPNFGRL 216
+ +S +D ++ +++ ++ LK +V+ D G
Sbjct: 3 LKGGESMVDWKLMQEIIEAPGVSGYEHLGIRDIVVDVLKEVADEVKVD-------KLG-- 53
Query: 217 TFTNIIGHVNPTAPRALSLACHYD 240
N+I H ++PR + +A H D
Sbjct: 54 ---NVIAHFKGSSPRIM-VAAHMD 73
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI;
1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4
PDB: 1y0r_A* 1xfo_A
Length = 353
Score = 32.3 bits (74), Expect = 0.29
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 186 IFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYD 240
I +I E+K +V+ D G N+I H P+ + +A H D
Sbjct: 29 IRDVVIEEIKDYVDEVKVD-------KLG-----NVIAHKKGEGPKVM-IAAHMD 70
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI,
structure initiative; 2.15A {Shigella flexneri 2a str}
SCOP: b.49.3.1 c.56.5.4
Length = 348
Score = 31.8 bits (73), Expect = 0.34
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 22/75 (29%)
Query: 176 DMNTIENLLKIF----------QYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHV 225
D++ ++ L + Q ++ E +V D G +++ +
Sbjct: 5 DLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFD-------GLG-----SVLIRL 52
Query: 226 NPTAPRALSLACHYD 240
N + + + H D
Sbjct: 53 NESTGPKVMICAHMD 67
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus,
cell MEMB disulfide bond, endocytosis, HOST-virus inter
receptor, secreted, transmembrane; HET: NAG FUC BMA MAN;
2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A*
3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Length = 640
Score = 31.7 bits (71), Expect = 0.53
Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 13/101 (12%)
Query: 217 TFTNIIGHVNPT--APRALSLACHYDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQ 274
NI G + + + D+ GA S V A+LL +A++ + +
Sbjct: 265 KILNIFGVIKGFVEPDHYVVVGAQRDAW-----GPGAAKSGVGTALLLKLAQMFSDMVLK 319
Query: 275 LNQNLGLDLIF--FDGEEAF----NEWSAEDSIWGARHLAA 309
+IF + + EW
Sbjct: 320 DGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFT 360
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE;
1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Length = 346
Score = 31.1 bits (71), Expect = 0.55
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 12/56 (21%)
Query: 185 KIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYD 240
+ YI S ++ + +T G ++IG+ L+ H D
Sbjct: 26 NVVSYIKSVIEPFVDEAKTT-------RHG-----SLIGYKKGKGIGKLAFFAHVD 69
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S
specificity, metallopeptidase M42, hydrolas; 2.70A
{Streptococcus pneumoniae}
Length = 355
Score = 30.7 bits (70), Expect = 0.74
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 28/80 (35%)
Query: 177 MNTIENLLK--------------IFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNII 222
M T+ + +K + Y+ +L +V TD G I
Sbjct: 2 MTTLFSKIKEVTELAAVSGHEAPVRAYLREKLTPHVDEVVTD-------GLG-----GIF 49
Query: 223 GHVNPTAPRALS--LACHYD 240
G + A A +A H D
Sbjct: 50 GIKHSEAVDAPRVLVASHMD 69
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 28.7 bits (65), Expect = 1.3
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 23 EVVKNSQHSARTLTDEEIDEITSRVD 48
V+K+ R LTD E D
Sbjct: 66 FVLKSFAADGRDLTDAETKAFLKAAD 91
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis
semifasciata} SCOP: a.39.1.4
Length = 109
Score = 28.3 bits (64), Expect = 1.8
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 23 EVVKNSQHSARTLTDEEIDEITSRVD 48
V+K R L D E + + D
Sbjct: 65 GVLKGFSAHGRDLNDTETKALLAAGD 90
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
hydrolase; 2.11A {Haemophilus somnus 129PT}
Length = 487
Score = 29.5 bits (66), Expect = 2.0
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 16/60 (26%)
Query: 185 KIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPR----ALSLACHYD 240
++ Q+II+ K+ G E D G N++ T + L H D
Sbjct: 32 QLAQFIINWAKTKGFFAERD-------EVG-----NVLIRKPATVGMENRKPVVLQAHLD 79
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 27.9 bits (63), Expect = 2.6
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 23 EVVKNSQHSARTLTDEEIDEITSRVDM 49
++N SAR LTD E + D
Sbjct: 65 LFLQNFSPSARALTDAETKAFLADGDK 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.4
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 17/42 (40%)
Query: 269 RQELSQLNQNLGLDLIFFDGEEAFNEWSAEDSIWGARHLAAK 310
+Q L +L +L L A+DS A LA K
Sbjct: 19 KQALKKLQASLKL--------------YADDS---APALAIK 43
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 27.2 bits (61), Expect = 3.8
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 23 EVVKNSQHSARTLTDEEIDEITSRVD 48
++ AR LTD E D
Sbjct: 66 LFLQVFSAGARALTDAETKAFLKAGD 91
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.70A {Staphylococcus aureus subsp}
SCOP: c.94.1.1
Length = 295
Score = 28.1 bits (63), Expect = 4.6
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 185 KIFQYIISELKSSGLDVETDTFSDTV-PN 212
K ++ + K +DVE FSD PN
Sbjct: 51 KAWEKVKELAKKDDIDVEIKHFSDYNLPN 79
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine
binding protein, NLPA lipoprotein, ST genomics; 1.90A
{Enterococcus faecalis} PDB: 4ef2_A*
Length = 246
Score = 28.0 bits (63), Expect = 5.1
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 185 KIFQYIISELKSSGLDVETDTFSDTV-PN 212
+I +++ L+ G+ +E T++D V PN
Sbjct: 17 EILEHVKPLLEKEGVKLEVTTYTDYVLPN 45
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding
protein, methionine, membrane protein; 1.85A {Treponema
pallidum} SCOP: c.94.1.1
Length = 241
Score = 27.9 bits (63), Expect = 5.2
Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 185 KIFQYIISELKSSGLDVETDTFSDTV-PN 212
++ + E+K +++ F++ V N
Sbjct: 16 RLLEIAKEEVKKQHIELRIVEFTNYVALN 44
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand,
acetylation, calcium, metal binding protein; 1.95A
{Gallus gallus} PDB: 2kqy_A
Length = 109
Score = 26.8 bits (60), Expect = 5.6
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 23 EVVKNSQHSARTLTDEEIDEITSRVD 48
+KN SAR LT E + D
Sbjct: 66 LFLKNFSSSARVLTSAETKAFLAAGD 91
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}
Length = 343
Score = 28.0 bits (63), Expect = 6.2
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 13/56 (23%)
Query: 185 KIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYD 240
++ I+ EL+ D G N+I + + L H D
Sbjct: 32 EVRSIILEELEGHIDGHRID-------GLG-----NLIVWKGSGEKKVI-LDAHID 74
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 28.2 bits (64), Expect = 6.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 107 LALTRQTLPTYAGS 120
+AL+RQ LP GS
Sbjct: 524 IALSRQNLPQLEGS 537
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 27.8 bits (63), Expect = 6.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 107 LALTRQTLPTYAGS 120
LAL+RQ LP G+
Sbjct: 529 LALSRQKLPHLPGT 542
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 27.9 bits (63), Expect = 7.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 107 LALTRQTLPTYAGS 120
L LTRQ +P G+
Sbjct: 548 LILTRQGVPVLDGT 561
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 27.9 bits (63), Expect = 7.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 107 LALTRQTLPTYAGS 120
L LTRQ LPT G+
Sbjct: 541 LVLTRQDLPTLEGA 554
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A
1rjv_A 1rk9_A 1g33_A
Length = 109
Score = 26.1 bits (58), Expect = 8.9
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 23 EVVKNSQHSARTLTDEEIDEITSRVDM 49
++K AR L+ +E + + D
Sbjct: 65 SILKGFSSDARDLSAKETKTLMAAGDK 91
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 27.4 bits (62), Expect = 9.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 107 LALTRQTLPTYAGS 120
L LTRQ +P +
Sbjct: 511 LVLTRQAVPLLSPE 524
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.408
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,197,540
Number of extensions: 375640
Number of successful extensions: 972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 952
Number of HSP's successfully gapped: 48
Length of query: 404
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 308
Effective length of database: 4,021,377
Effective search space: 1238584116
Effective search space used: 1238584116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)