RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15910
(404 letters)
>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase,
QPCT {Human (Homo sapiens) [TaxId: 9606]}
Length = 329
Score = 143 bits (362), Expect = 3e-40
Identities = 97/231 (41%), Positives = 136/231 (58%), Gaps = 17/231 (7%)
Query: 185 KIFQYIISELKSSGLD--VETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSK 242
Q+I+ ++ D +E DTF P +G +F+NII +NPTA R L LACHYDSK
Sbjct: 54 AARQHIMQRIQRLQADWVLEIDTFLSQTP-YGYRSFSNIISTLNPTAKRHLVLACHYDSK 112
Query: 243 IMASPF----IGATDSAVPCAMLLYIARLMRQELSQLNQNLG------LDLIFFDGEEAF 292
+ +GATDSAVPCAM+L +AR + ++L L L LIFFDGEEAF
Sbjct: 113 YFSHWNNRVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAF 172
Query: 293 NEWSAEDSIWGARHLAAKWERSHLQHRGKTLTKLDRMDMLVLLDLLGTSNPRFYSYYPPT 352
WS +DS++G+RHLAAK + + ++L MD+LVLLDL+G NP F +++P +
Sbjct: 173 LHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNS 232
Query: 353 HKWYKQLVGIESRLTARGLLNMVNSNRSKKLTYFREMSTFPVAEDDHLPFY 403
+W+++L IE L GLL + S + YF+ S V +DDH+PF
Sbjct: 233 ARWFERLQAIEHELHELGLL----KDHSLEGRYFQNYSYGGVIQDDHIPFL 279
Score = 36.0 bits (82), Expect = 0.006
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 23 EVVKNSQHSARTLTDEEIDEITSRVDMAE-FNTVLDPILVERGVGSENHEVVKN 75
KN H L + +I ++E + L P+L+ER GS +
Sbjct: 5 PEEKNY-HQPAILNSSALRQIAEGTSISEMWQNDLQPLLIERYPGSPGSYAARQ 57
Score = 27.1 bits (59), Expect = 3.6
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 4 FNTVLDPILVERGVGSENHEVVKN 27
+ L P+L+ER GS +
Sbjct: 34 WQNDLQPLLIERYPGSPGSYAARQ 57
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica
[TaxId: 671]}
Length = 291
Score = 54.9 bits (131), Expect = 5e-09
Identities = 19/145 (13%), Positives = 51/145 (35%), Gaps = 14/145 (9%)
Query: 188 QYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAP--RALSLACHYDSKIMA 245
+I SE ++ + + + +++ + + + + H DS I +
Sbjct: 47 DWIASEWQALSASLPNASV--KQVSHSGYNQKSVVMTITGSEAPDEWIVIGGHLDSTIGS 104
Query: 246 -----SPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFN---EWSA 297
S GA D A A + + R++ + Q ++ + + + EE + A
Sbjct: 105 HTNEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRS--IAFMAYAAEEVGLRGSQDLA 162
Query: 298 EDSIWGARHLAAKWERSHLQHRGKT 322
+++ + + ++G
Sbjct: 163 NQYKSEGKNVVSALQLDMTNYKGSA 187
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor
ectodomain, protease-like domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 294
Score = 46.0 bits (108), Expect = 4e-06
Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 16/130 (12%)
Query: 188 QYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAP--RALSLACHYDSKIMA 245
Y+ ++ + L + NI G + + + D+
Sbjct: 46 LYVENQFREFKLSK----VWRDQHFVKEIKILNIFGVIKGFVEPDHYVVVGAQRDAWGP- 100
Query: 246 SPFIGATDSAVPCAMLLYIARLMRQELSQLNQ--NLGLDLIFFDGEEAFNEWSAEDSIWG 303
GA S V A+LL +A++ + + + + + + + + E W
Sbjct: 101 ----GAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGSVGATE---WL 153
Query: 304 ARHLAAKWER 313
+L++ +
Sbjct: 154 EGYLSSLHLK 163
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II
FOLH1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 41.0 bits (95), Expect = 2e-04
Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 18/133 (13%)
Query: 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAP--RALSLACH 238
E ++ + I S+ K GLD D + R+ N+IG + R + L H
Sbjct: 31 EQNFQLAKQIQSQWKEFGLDSVELAHYDVLLEVTRI--YNVIGTLRGAVEPDRYVILGGH 88
Query: 239 YDSKIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQ-NLGLDLIFFDGEEAFNEWSA 297
DS + G D A++ I R + + + +D E
Sbjct: 89 RDSWVF-----GGIDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWDAE-------- 135
Query: 298 EDSIWGARHLAAK 310
E + G+ A +
Sbjct: 136 EFGLLGSTEWAEE 148
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC,
catalytic domain {Bacillus subtilis [TaxId: 1423]}
Length = 275
Score = 37.2 bits (85), Expect = 0.003
Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 26/116 (22%)
Query: 185 KIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSL-ACHYDS-- 241
++ Q + S ++ +V TD G ++I + A H D
Sbjct: 24 EVRQVMKSYIEPFADEVTTD-------RLG-----SLIAKKTGAENGPKIMIAGHLDEVP 71
Query: 242 -------KIMASPFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 290
A D+ + CA+ + + R L + + + EE
Sbjct: 72 HFEFTVMNNEKFLLAKAWDNRIGCAIAIDVLR----NLQNTDHPNIVYGVGTVQEE 123
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella
flexneri [TaxId: 623]}
Length = 264
Score = 34.5 bits (78), Expect = 0.016
Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 20/95 (21%)
Query: 185 KIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYDSKIM 244
++ Q ++ E +V D G +++ +N + + + H D
Sbjct: 21 EVRQILLEEAARLQKEVRFD-------GLG-----SVLIRLNESTGPKVMICAHMDEVFD 68
Query: 245 ASPFI--------GATDSAVPCAMLLYIARLMRQE 271
+ + A D + C +L+ + R +
Sbjct: 69 TTFQVLPHQRVMGKAFDDRLSCYLLVTLLRELHDA 103
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2,
catalytic domain {Pseudomonas sp., strain rs-16 [TaxId:
306]}
Length = 276
Score = 33.7 bits (76), Expect = 0.033
Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 22/132 (16%)
Query: 181 ENLLKIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYD 240
E + ++ +ELK+ G V + G + NI+G + + L L H D
Sbjct: 36 EGIAAAGNFLEAELKNLGFTVTR------SKSAGLVVGDNIVGKIKGRGGKNLLLMSHMD 89
Query: 241 SKIMASPF--------------IGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFF 286
+ + G D A++L+ +L+++ + + ++F
Sbjct: 90 TVYLKGILAKAPFRVEGDKAYGPGIADDKGGNAVILHTLKLLKEY--GVRDYGTITVLFN 147
Query: 287 DGEEAFNEWSAE 298
EE + S +
Sbjct: 148 TDEEKGSFGSRD 159
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048,
catalytic domain {Thermotoga maritima [TaxId: 2336]}
Length = 248
Score = 32.2 bits (72), Expect = 0.075
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 32/115 (27%)
Query: 177 MNTIENLLK-------------IFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIG 223
M T + L++ + YI S ++ + +T G ++IG
Sbjct: 1 METGKLLMELSNLDGPSGYETNVVSYIKSVIEPFVDEAKTT-------RHG-----SLIG 48
Query: 224 HVNPTAPRALSLACHYDSKIMASPFI-------GATDSAVPCAMLLYIARLMRQE 271
+ L+ H D I + F A D+ C +L+ + +++
Sbjct: 49 YKKGKGIGKLAFFAHVDEIIDQTAFETNGKVVGKALDNRASCGVLVKVLEFLKRY 103
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049
{Thermotoga maritima [TaxId: 2336]}
Length = 255
Score = 32.2 bits (72), Expect = 0.085
Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 27/135 (20%)
Query: 185 KIFQYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAP-RALSLACHYDSKI 243
K+ +I S+++ ++ TD G N+I + L ++ H D
Sbjct: 18 KVRDFIKSKIEGLVDNLYTD-------VLG-----NLIALKRGRDSSKKLLVSAHMDEVF 65
Query: 244 MASPFI-------GATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEEAFNEWS 296
++ A D C++L+ L F +E
Sbjct: 66 VSDYIEKNGRAVGKAFDDRAGCSVLI-------DVLESGVSPAYDTYFVFTVQEETGLRG 118
Query: 297 AEDSIWGARHLAAKW 311
+ + + A
Sbjct: 119 SAVVVEQLKPTCAIV 133
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase
{Thermus thermophilus [TaxId: 274]}
Length = 104
Score = 30.2 bits (68), Expect = 0.13
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 29 QHSARTLTDEEIDEITSRV 47
+H RTL DEE++E SRV
Sbjct: 69 RHPKRTLRDEEVEEAVSRV 87
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX,
catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 255
Score = 30.4 bits (68), Expect = 0.30
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 13/53 (24%)
Query: 188 QYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAPRALSLACHYD 240
+I E+K +V+ D G N+I H P+ + +A H D
Sbjct: 214 DVVIEEIKDYVDEVKVD-------KLG-----NVIAHKKGEGPKVM-IAAHMD 253
>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine
synthase, catalytic domain {Yeast (Saccharomyces
kluyveri) [TaxId: 4934]}
Length = 322
Score = 29.6 bits (66), Expect = 0.63
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 19/104 (18%)
Query: 188 QYIISELKSSGLDVETDTFSDTVPNFGRLTFTNIIGHVNPTAP-RALSLACHYDSKIMAS 246
+ +E +S G V+ D N+ + + H D++
Sbjct: 58 DWFTNECESLGCKVKVDKIG------------NMFAVYPGKNGGKPTATGSHLDTQ---- 101
Query: 247 PFIGATDSAVPCAMLLYIARLMRQELSQLNQNLGLDLIFFDGEE 290
P G D + L + R + N + + ++ + EE
Sbjct: 102 PEAGKYDGILGVLAGLEVLRTFKDNNYVPNYD--VCVVVWFNEE 143
>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 174
Score = 26.2 bits (58), Expect = 5.7
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 265 ARLMRQELSQLNQNLGLDLI--FFDGEEAF-NEW 295
+MR L QL Q GL L FD + ++W
Sbjct: 125 DEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKW 158
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 26.1 bits (57), Expect = 8.3
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 160 PKVLIEGIISDNKSALDMNTIENLLKIF 187
+ + I+ N++ L + I+NL+K
Sbjct: 26 YQEIKNVILEVNEAVLTESMIQNLIKQM 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.408
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,490,853
Number of extensions: 68903
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 20
Length of query: 404
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 317
Effective length of database: 1,213,086
Effective search space: 384548262
Effective search space used: 384548262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)