BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15911
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IS1|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In C2 Form At 2.45 Angstrom
Resolution
Length = 446
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 3 GKYLNHKGRNRRFTNPEELETARVREEKEKQWRAK-AKGVEKLIDVENPNRVVKKNKK-- 59
G + G+ +FT+P+E+E +V Q+R + L V NP ++ +
Sbjct: 204 GSKVRLSGQGFKFTSPDEIEVYKVL--NNSQFRDSFSPDYANLTQVRNPKIIINSDGSAT 261
Query: 60 -----LSTLNEVVKG-PTTAPELS 77
+ TL +++ P T P+ S
Sbjct: 262 VDLGDIGTLGYIIRSKPNTLPDFS 285
>pdb|3IRP|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus At 1.50 Angstrom Resolution
pdb|3IRZ|A Chain A, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In P212121 Form
pdb|3IS0|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In The Presence Of
Cholesterol
Length = 429
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 3 GKYLNHKGRNRRFTNPEELETARVREEKEKQWRAK-AKGVEKLIDVENPNRVVKKNKK-- 59
G + G+ +FT+P+E+E +V Q+R + L V NP ++ +
Sbjct: 187 GSKVRLSGQGFKFTSPDEIEVYKVL--NNSQFRDSFSPDYANLTQVRNPKIIINSDGSAT 244
Query: 60 -----LSTLNEVVKG-PTTAPELS 77
+ TL +++ P T P+ S
Sbjct: 245 VDLGDIGTLGYIIRSKPNTLPDFS 268
>pdb|1JX6|A Chain A, Crystal Structure Of Luxp From Vibrio Harveyi Complexed
With Autoinducer-2
Length = 342
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 67 VKGPTTAPELSRREREEIEAQKATAHYQKLHAEGKTEQARADLAQKDEAAQLKSAQTSKA 126
V+G T +++R E++ +A+Y K + + A+A LA+ + + + T A
Sbjct: 191 VRGDTFIHQVNRDNNFELQ----SAYYTKATKQSGYDAAKASLAKHPDVDFIYACSTDVA 246
Query: 127 LG 128
LG
Sbjct: 247 LG 248
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 5 YLNHKGRNRRFTNP 18
Y NH G+NR FT P
Sbjct: 548 YQNHMGKNRMFTKP 561
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 5 YLNHKGRNRRFTNP 18
Y NH G+NR FT P
Sbjct: 547 YQNHMGKNRMFTKP 560
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 5 YLNHKGRNRRFTNP 18
Y NH G+NR FT P
Sbjct: 552 YQNHMGKNRMFTKP 565
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 5 YLNHKGRNRRFTNP 18
Y NH G+NR FT P
Sbjct: 552 YQNHMGKNRMFTKP 565
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 5 YLNHKGRNRRFTNP 18
Y NH G+NR FT P
Sbjct: 552 YQNHMGKNRMFTKP 565
>pdb|1ZHH|A Chain A, Crystal Structure Of The Apo Form Of Vibrio Harveyi Luxp
Complexed With The Periplasmic Domain Of Luxq
Length = 344
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 67 VKGPTTAPELSRREREEIEAQKATAHYQKLHAEGKTEQARADLAQKDEAAQLKSAQTSKA 126
V+G T +++R E++ +A+Y K + + A+A LA+ + + + T A
Sbjct: 193 VRGDTFIHQVNRDNNFELQ----SAYYTKATKQSGYDAAKASLAKHPDVDFIYACSTDVA 248
Query: 127 LG 128
LG
Sbjct: 249 LG 250
>pdb|2HJ9|A Chain A, Crystal Structure Of The Autoinducer-2-Bound Form Of
Vibrio Harveyi Luxp Complexed With The Periplasmic
Domain Of Luxq
pdb|2HJ9|B Chain B, Crystal Structure Of The Autoinducer-2-Bound Form Of
Vibrio Harveyi Luxp Complexed With The Periplasmic
Domain Of Luxq
Length = 339
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 67 VKGPTTAPELSRREREEIEAQKATAHYQKLHAEGKTEQARADLAQKDEAAQLKSAQTSKA 126
V+G T +++R E++ +A+Y K + + A+A LA+ + + + T A
Sbjct: 188 VRGDTFIHQVNRDNNFELQ----SAYYTKATKQSGYDAAKASLAKHPDVDFIYACSTDVA 243
Query: 127 LG 128
LG
Sbjct: 244 LG 245
>pdb|4EJO|A Chain A, Crystal Structure Of Padr Family Transcriptional Regulator
From Eggerthella Lenta Dsm 2243
pdb|4EJO|B Chain B, Crystal Structure Of Padr Family Transcriptional Regulator
From Eggerthella Lenta Dsm 2243
Length = 123
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 22 ETARVREEKEKQWRAKAKGVEKLIDVENPNR 52
E RV E E QW GV KL++ +R
Sbjct: 88 EGLRVLREVEAQWHVLCDGVGKLLETNGEDR 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.305 0.121 0.319
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,555,627
Number of Sequences: 62578
Number of extensions: 125922
Number of successful extensions: 232
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 55
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 46 (22.3 bits)