BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15911
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q13442|HAP28_HUMAN 28 kDa heat- and acid-stable phosphoprotein OS=Homo sapiens
GN=PDAP1 PE=1 SV=1
Length = 181
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 56/77 (72%), Gaps = 5/77 (6%)
Query: 34 WRAKAKGVEKLIDVENPNRVVKKNKKLSTLNEVVKGPTTAPELSRREREEIEAQKATAHY 93
++ K KGVE LID+ENPNRV + KK++ L+ + GP ELSRREREEIE QKA Y
Sbjct: 70 YQQKRKGVEGLIDIENPNRVAQTTKKVTQLD--LDGPK---ELSRREREEIEKQKAKERY 124
Query: 94 QKLHAEGKTEQARADLA 110
K+H GKTEQA+ADLA
Sbjct: 125 MKMHLAGKTEQAKADLA 141
>sp|Q62785|HAP28_RAT 28 kDa heat- and acid-stable phosphoprotein OS=Rattus norvegicus
GN=Pdap1 PE=1 SV=1
Length = 181
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 56/77 (72%), Gaps = 5/77 (6%)
Query: 34 WRAKAKGVEKLIDVENPNRVVKKNKKLSTLNEVVKGPTTAPELSRREREEIEAQKATAHY 93
++ K KGVE LID+ENPNRV + KK++ L+ + GP ELSRREREEIE QKA Y
Sbjct: 70 YQQKRKGVEGLIDIENPNRVAQTTKKVTQLD--LDGPK---ELSRREREEIEKQKAKERY 124
Query: 94 QKLHAEGKTEQARADLA 110
K+H GKTEQA+ADLA
Sbjct: 125 MKMHLAGKTEQAKADLA 141
>sp|Q3UHX2|HAP28_MOUSE 28 kDa heat- and acid-stable phosphoprotein OS=Mus musculus
GN=Pdap1 PE=1 SV=1
Length = 181
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 56/77 (72%), Gaps = 5/77 (6%)
Query: 34 WRAKAKGVEKLIDVENPNRVVKKNKKLSTLNEVVKGPTTAPELSRREREEIEAQKATAHY 93
++ K KGVE LID+ENPNRV + KK++ L+ + GP ELSRREREEIE QKA Y
Sbjct: 70 YQQKRKGVEGLIDIENPNRVAQTTKKVTQLD--LDGPK---ELSRREREEIEKQKAKERY 124
Query: 94 QKLHAEGKTEQARADLA 110
K+H GKTEQA+ADLA
Sbjct: 125 MKMHLAGKTEQAKADLA 141
>sp|Q556U5|HAP28_DICDI 28 kDa heat- and acid-stable phosphoprotein homolog
OS=Dictyostelium discoideum GN=DDB_G0273095 PE=3 SV=1
Length = 208
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 47 VENPNRVVKKNKKLSTLNEVVKGPTTAPELSRREREEIEAQKAT 90
+ NPNR+ + KKLS +N K ELSRRE+EE+ Q AT
Sbjct: 121 IANPNRMKQVTKKLSEINVNAK-----VELSRREKEELARQAAT 159
>sp|Q64PL4|DNAA_BACFR Chromosomal replication initiator protein DnaA OS=Bacteroides
fragilis (strain YCH46) GN=dnaA PE=3 SV=1
Length = 476
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 45 IDVENPNRVVKKNKKLST--------LNEVVKGP---TTAPELSRREREEIEAQKATAHY 93
ID++ R+V+K + T +N V K ++A R+RE ++A++ +
Sbjct: 355 IDLDLAQRIVRKVVRCETKAVTIDDIINVVCKHFDLESSAIHTKSRKREVVQARQVAMYL 414
Query: 94 QKLHAEGKTEQARADLAQKDEAAQLKSAQTSKA 126
K H + T + + KD A L + +T K
Sbjct: 415 AKTHTDFSTSKIGKFIGNKDHATVLHACKTVKG 447
>sp|Q5L9D0|DNAA_BACFN Chromosomal replication initiator protein DnaA OS=Bacteroides
fragilis (strain ATCC 25285 / NCTC 9343) GN=dnaA PE=3
SV=1
Length = 476
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 45 IDVENPNRVVKKNKKLST--------LNEVVKGP---TTAPELSRREREEIEAQKATAHY 93
ID++ R+V+K + T +N V K ++A R+RE ++A++ +
Sbjct: 355 IDLDLAQRIVRKVVRCETKAVTIDDIINVVCKHFDLESSAIHTKSRKREVVQARQVAMYL 414
Query: 94 QKLHAEGKTEQARADLAQKDEAAQLKSAQTSKA 126
K H + T + + KD A L + +T K
Sbjct: 415 AKTHTDFSTSKIGKFIGNKDHATVLHACKTVKG 447
>sp|Q19124|A16L1_CAEEL Autophagic-related protein 16.1 OS=Caenorhabditis elegans
GN=atg-16.1 PE=3 SV=1
Length = 578
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 16 TNPEELET---ARVREEKEKQWRAKAKGVEKLIDVENPNRVVKKNKKLSTL--NEVVKGP 70
+N +LET ARV+EE + +R+K + ++LID +R+ KK S + ++
Sbjct: 99 SNSSQLETGELARVKEEMAELYRSKCQNDQRLIDAN--HRIADFEKKSSAIIAEKIALEA 156
Query: 71 TTAPELSRREREEIEAQKATAHYQKLHAE 99
T ++ + E+E Q+ +L+ E
Sbjct: 157 TAKSICAKYAKTEVELQRLKVDNDQLNDE 185
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 37 KAKGVEKLIDVENPNRVVKKNKKLSTLNEVVKGPTTAPELSRREREEIEAQ--KATAHYQ 94
+A G+E D+ + VKK K L L + + P +++ E EI A K+T +
Sbjct: 255 RALGIETDEDIVDSILDVKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFT 314
Query: 95 KLHAEGKTEQAR 106
+ E K EQ R
Sbjct: 315 DTNPEVKAEQRR 326
>sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4 OS=Arabidopsis
thaliana GN=SMC4 PE=2 SV=1
Length = 1241
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 41 VEKLIDVENPNRVVKK----NKKLSTLNEVVKGPTTAPELSRREREEIEAQKATA 91
+E L D+ N+ V+K NK+L TLNE G +L+ +ER+ +E K A
Sbjct: 193 LEYLEDIIGTNKYVEKIDELNKQLETLNESRSGVVQMVKLAEKERDNLEGLKDEA 247
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.121 0.319
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,835,112
Number of Sequences: 539616
Number of extensions: 1730508
Number of successful extensions: 6325
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 336
Number of HSP's that attempted gapping in prelim test: 6117
Number of HSP's gapped (non-prelim): 528
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)