Query psy15911
Match_columns 131
No_of_seqs 122 out of 141
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 16:21:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3375|consensus 100.0 6.4E-44 1.4E-48 278.9 10.2 115 2-121 3-159 (174)
2 PF10252 PP28: Casein kinase s 99.9 2.8E-27 6.1E-32 168.0 6.5 69 48-121 1-77 (82)
3 PLN03086 PRLI-interacting fact 34.9 87 0.0019 29.4 5.3 19 103-121 21-43 (567)
4 PF13865 FoP_duplication: C-te 34.3 62 0.0013 22.1 3.3 17 11-27 35-51 (74)
5 PHA03162 hypothetical protein; 33.1 66 0.0014 25.2 3.6 58 7-86 4-61 (135)
6 PRK13447 F0F1 ATP synthase sub 22.4 2.4E+02 0.0051 21.4 5.0 60 42-119 64-123 (136)
7 PF03701 UPF0181: Uncharacteri 21.4 2.6E+02 0.0057 18.6 4.4 41 73-118 5-48 (51)
8 PF07721 TPR_4: Tetratricopept 17.9 1.1E+02 0.0023 16.3 1.7 16 95-110 10-25 (26)
9 PF13138 DUF3982: Protein of u 17.4 60 0.0013 22.9 0.7 16 38-53 45-60 (73)
10 cd01850 CDC_Septin CDC/Septin. 16.6 53 0.0012 26.9 0.4 12 42-53 227-238 (276)
No 1
>KOG3375|consensus
Probab=100.00 E-value=6.4e-44 Score=278.85 Aligned_cols=115 Identities=53% Similarity=0.764 Sum_probs=102.2
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHHHHHH----------------------------------HHHHhhhccccccccc
Q psy15911 2 EGKYLNHKGRNRRFTNPEELETARVREEKE----------------------------------KQWRAKAKGVEKLIDV 47 (131)
Q Consensus 2 RGk~~~hKGr~R~FTspEEl~~q~~~e~~~----------------------------------~e~~~k~kGVegLIEI 47 (131)
||+|+|||||.||||||||+++++..+.+. .+.....|||+|||||
T Consensus 3 rGkf~ghkgr~RqftSpee~D~~~gs~~skAr~~~~kk~~~~~~~~d~~~ee~~~~~dssed~Ede~~~~rKGve~lieI 82 (174)
T KOG3375|consen 3 RGKFGGHKGRARQFTSPEEIDQQLGSEKSKAREREEKKEGGDGAAGDPKKEESELDSDSSEDSEDEAQVARKGVEGLIEI 82 (174)
T ss_pred CcccCCCCCcccccCCHHHHHHHhhhhhhhccCHHHhhccccccccCcchhhhcccccccchhhhHHHHHhhhhhhheec
Confidence 899999999999999999999996643210 0233479999999999
Q ss_pred cCCchhhhccccccccccccCCCCCCCCC-chHHHHHHHHHHHHHHHHHHHhccChHHHHHhHHh-------hHHHHHHH
Q psy15911 48 ENPNRVVKKNKKLSTLNEVVKGPTTAPEL-SRREREEIEAQKATAHYQKLHAEGKTEQARADLAQ-------KDEAAQLK 119 (131)
Q Consensus 48 ~NPNr~~kk~~K~~~l~~~~~~~~~~~~l-sRrERE~~ekq~a~~ry~klh~~gkT~eakaDLaR-------REeAA~kR 119 (131)
+|||||.++.+||+.|+++. +++| ||||||+||+|+|++||||||.+|||+||+||||| ||+||++|
T Consensus 83 eNPNrV~qktkklta~~LD~-----~k~~~SRRereeiEKQrA~eRYmklh~aGKTeqAkaDLaRlalir~qReeaa~kr 157 (174)
T KOG3375|consen 83 ENPNRVAQKTKKLTALDLDG-----PKELESRREREEIEKQRAKERYMKLHLAGKTEQAKADLARLALIRQQREEAAAKR 157 (174)
T ss_pred cCchHHHHhhhhhhhhccCC-----chhhhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 5555 99999999999999999999999999999999999 99999998
Q ss_pred HH
Q psy15911 120 SA 121 (131)
Q Consensus 120 ~~ 121 (131)
.+
T Consensus 158 e~ 159 (174)
T KOG3375|consen 158 EA 159 (174)
T ss_pred HH
Confidence 54
No 2
>PF10252 PP28: Casein kinase substrate phosphoprotein PP28; InterPro: IPR019380 This domain is a region of 70 residues conserved in proteins from plants to humans and contains a serine/arginine rich motif. In rats the full protein is a casein kinase substrate, and this region contains phosphorylation sites for both cAMP-dependent protein kinase and casein kinase II [].
Probab=99.94 E-value=2.8e-27 Score=168.03 Aligned_cols=69 Identities=64% Similarity=0.897 Sum_probs=64.5
Q ss_pred cCCchhhhcc-ccccccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhccChHHHHHhHHh-------hHHHHHHH
Q psy15911 48 ENPNRVVKKN-KKLSTLNEVVKGPTTAPELSRREREEIEAQKATAHYQKLHAEGKTEQARADLAQ-------KDEAAQLK 119 (131)
Q Consensus 48 ~NPNr~~kk~-~K~~~l~~~~~~~~~~~~lsRrERE~~ekq~a~~ry~klh~~gkT~eakaDLaR-------REeAA~kR 119 (131)
+||||+.+++ +++++|+.+. +++|||||||+|++|+|+++||+||++|||+||++|||| ||+||++|
T Consensus 1 ~NPNr~~~k~~~k~~~~~~~~-----~~~lSRRERE~iekq~A~erY~klh~~GKT~eakaDLaRLAlIRkqREeaA~kR 75 (82)
T PF10252_consen 1 ENPNRVKKKRKKKVSDIDEDA-----PPELSRREREEIEKQRARERYMKLHAEGKTDEAKADLARLALIRKQREEAAAKR 75 (82)
T ss_pred CCCCccchhhHHHHhhccccc-----ccccchhHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5999999997 7888888775 799999999999999999999999999999999999999 99999999
Q ss_pred HH
Q psy15911 120 SA 121 (131)
Q Consensus 120 ~~ 121 (131)
.+
T Consensus 76 ~a 77 (82)
T PF10252_consen 76 EA 77 (82)
T ss_pred HH
Confidence 65
No 3
>PLN03086 PRLI-interacting factor K; Provisional
Probab=34.89 E-value=87 Score=29.41 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=12.3
Q ss_pred HHHHHhHHh----hHHHHHHHHH
Q psy15911 103 EQARADLAQ----KDEAAQLKSA 121 (131)
Q Consensus 103 ~eakaDLaR----REeAA~kR~~ 121 (131)
++|+.-+.| |+|||++|.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~ 43 (567)
T PLN03086 21 QRAKLKLERERKAKEEAAKQREA 43 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555 7788887744
No 4
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=34.26 E-value=62 Score=22.08 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=13.9
Q ss_pred cccCCCCHHHHHHHHHH
Q psy15911 11 RNRRFTNPEELETARVR 27 (131)
Q Consensus 11 r~R~FTspEEl~~q~~~ 27 (131)
+.+.-.|.|||+++++.
T Consensus 35 ~~~~~kT~EeLDaELD~ 51 (74)
T PF13865_consen 35 RKKPPKTAEELDAELDA 51 (74)
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 34788899999999874
No 5
>PHA03162 hypothetical protein; Provisional
Probab=33.11 E-value=66 Score=25.25 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=34.4
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHHHHhhhccccccccccCCchhhhccccccccccccCCCCCCCCCchHHHHHHHH
Q psy15911 7 NHKGRNRRFTNPEELETARVREEKEKQWRAKAKGVEKLIDVENPNRVVKKNKKLSTLNEVVKGPTTAPELSRREREEIEA 86 (131)
Q Consensus 7 ~hKGr~R~FTspEEl~~q~~~e~~~~e~~~k~kGVegLIEI~NPNr~~kk~~K~~~l~~~~~~~~~~~~lsRrERE~~ek 86 (131)
|.||....--++|||.+++..- +++|-+...+=...+..-+.. +.+.||.++||.+=.
T Consensus 4 ~~k~~pk~~~tmEeLaaeL~kL-----------------qmENK~LKkkl~~~~~~~~~p-----~d~~LTp~qKea~I~ 61 (135)
T PHA03162 4 GSKKCPKAQPTMEDLAAEIAKL-----------------QLENKALKKKIKEGTDDDPLP-----GDPILTPAAKEAMIG 61 (135)
T ss_pred CcCCCCccCCCHHHHHHHHHHH-----------------HHHHHHHHHHHHhccCCCCCC-----CCccCCHHHHHHHHH
Confidence 4566777778999999998765 344544333222222110111 246799999997643
No 6
>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional
Probab=22.41 E-value=2.4e+02 Score=21.41 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=29.9
Q ss_pred cccccccCCchhhhccccccccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhccChHHHHHhHHhhHHHHHHH
Q psy15911 42 EKLIDVENPNRVVKKNKKLSTLNEVVKGPTTAPELSRREREEIEAQKATAHYQKLHAEGKTEQARADLAQKDEAAQLK 119 (131)
Q Consensus 42 egLIEI~NPNr~~kk~~K~~~l~~~~~~~~~~~~lsRrERE~~ekq~a~~ry~klh~~gkT~eakaDLaRREeAA~kR 119 (131)
.|+++|.|+|++.- |...+. .+.++. ..+..|+.+.+..--. --.|++-|++.|+-+.++
T Consensus 64 GGfleV~~~n~V~I-------lad~ae---~~edID-~~~a~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~r~ 123 (136)
T PRK13447 64 GGVLRVTGGARVEI-------ACREAV---LGEDLA-RLEAVVRAVRAAQLDA-------ARRARVEQTRLHAQAVRQ 123 (136)
T ss_pred CcEEEEecCCEEEE-------EeceeE---chhhcC-HHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHH
Confidence 37788887885433 222221 123444 5666666554433221 124556666655555444
No 7
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=21.44 E-value=2.6e+02 Score=18.64 Aligned_cols=41 Identities=34% Similarity=0.421 Sum_probs=29.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhccCh-HHHHHhHHh--hHHHHHH
Q psy15911 73 APELSRREREEIEAQKATAHYQKLHAEGKT-EQARADLAQ--KDEAAQL 118 (131)
Q Consensus 73 ~~~lsRrERE~~ekq~a~~ry~klh~~gkT-~eakaDLaR--REeAA~k 118 (131)
-|.||-.| .|.|-++-+.|.++|.. -||=+-.|. |+..+..
T Consensus 5 lp~LtHee-----QQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~~~~ 48 (51)
T PF03701_consen 5 LPSLTHEE-----QQQAVERIQELMAQGMSSGEAIAIVAQEIREEHQGK 48 (51)
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhc
Confidence 46777654 46899999999999975 577776666 6655443
No 8
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=17.89 E-value=1.1e+02 Score=16.32 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=12.4
Q ss_pred HHHhccChHHHHHhHH
Q psy15911 95 KLHAEGKTEQARADLA 110 (131)
Q Consensus 95 klh~~gkT~eakaDLa 110 (131)
-++.+|..++|.+-|.
T Consensus 10 ~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 10 ALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3678899999987654
No 9
>PF13138 DUF3982: Protein of unknown function (DUF3982)
Probab=17.37 E-value=60 Score=22.95 Aligned_cols=16 Identities=25% Similarity=0.327 Sum_probs=13.4
Q ss_pred hccccccccccCCchh
Q psy15911 38 AKGVEKLIDVENPNRV 53 (131)
Q Consensus 38 ~kGVegLIEI~NPNr~ 53 (131)
+-|.-.|+||.|||-.
T Consensus 45 ~~g~~PL~E~P~P~G~ 60 (73)
T PF13138_consen 45 SVGGWPLNEIPKPNGA 60 (73)
T ss_pred hcccccccccCCCCCC
Confidence 5688899999999943
No 10
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=16.60 E-value=53 Score=26.89 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=10.1
Q ss_pred cccccccCCchh
Q psy15911 42 EKLIDVENPNRV 53 (131)
Q Consensus 42 egLIEI~NPNr~ 53 (131)
-|++||+||+|.
T Consensus 227 WG~~~v~n~~h~ 238 (276)
T cd01850 227 WGVVEVENEEHC 238 (276)
T ss_pred ccEEeecCcccc
Confidence 368999999975
Done!