Query psy15911
Match_columns 131
No_of_seqs 122 out of 141
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 16:22:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sop_A Neuronal-specific septi 22.5 23 0.0008 27.4 0.6 12 42-53 225-236 (270)
2 3p9a_A DNA-packaging protein G 20.8 63 0.0022 24.9 2.7 21 6-26 13-33 (162)
3 1nb0_A Hypothetical protein FL 18.3 84 0.0029 23.0 2.9 19 12-30 105-123 (147)
4 1n08_A Putative riboflavin kin 16.1 1E+02 0.0036 23.0 3.0 19 12-30 123-141 (163)
5 2bn8_A CEDA, cell division act 14.0 63 0.0021 22.4 1.1 23 1-23 46-74 (87)
6 3bnw_A Riboflavin kinase, puta 13.9 1.2E+02 0.0042 23.0 2.9 19 12-30 127-145 (181)
7 2qnr_A Septin-2, protein NEDD5 13.4 50 0.0017 25.7 0.5 12 43-54 242-253 (301)
8 2qag_B Septin-6, protein NEDD5 9.7 68 0.0023 27.2 0.2 12 42-53 258-269 (427)
9 1rmv_A Ribgrass mosaic virus c 9.4 89 0.0031 23.9 0.7 14 42-55 92-105 (157)
10 1cgm_E Cucumber green mottle m 9.2 87 0.003 24.1 0.6 14 42-55 92-105 (161)
No 1
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=22.48 E-value=23 Score=27.36 Aligned_cols=12 Identities=42% Similarity=0.473 Sum_probs=9.4
Q ss_pred cccccccCCchh
Q psy15911 42 EKLIDVENPNRV 53 (131)
Q Consensus 42 egLIEI~NPNr~ 53 (131)
-|+|||+||+|-
T Consensus 225 wg~~~v~n~~h~ 236 (270)
T 3sop_A 225 WGIIEVENLNHC 236 (270)
T ss_dssp C-CEESSCTTTC
T ss_pred ceEEEeCCcccc
Confidence 378999999974
No 2
>3p9a_A DNA-packaging protein GP3; terminase small subunit, bacteriophage P22, D binding protein; 1.75A {Enterobacteria phage P22}
Probab=20.82 E-value=63 Score=24.85 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=17.6
Q ss_pred CCCCCcccCCCCHHHHHHHHH
Q psy15911 6 LNHKGRNRRFTNPEELETARV 26 (131)
Q Consensus 6 ~~hKGr~R~FTspEEl~~q~~ 26 (131)
++.-||..-|.|||+|.....
T Consensus 13 Rs~~GR~p~f~tPEeL~~aa~ 33 (162)
T 3p9a_A 13 RSSHGRNPKFESPEALWAACC 33 (162)
T ss_dssp CCTTCSSCCCCSHHHHHHHHH
T ss_pred HhhcCCCCCcCCHHHHHHHHH
Confidence 456699999999999998854
No 3
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP; 1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A* 1q9s_A*
Probab=18.26 E-value=84 Score=23.02 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.3
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy15911 12 NRRFTNPEELETARVREEK 30 (131)
Q Consensus 12 ~R~FTspEEl~~q~~~e~~ 30 (131)
.+.|.|.|+|.+|+..+.+
T Consensus 105 E~kF~sle~L~~qI~~D~~ 123 (147)
T 1nb0_A 105 EKNFDSLESLISAIQGDIE 123 (147)
T ss_dssp CCCCSSHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHH
Confidence 5679999999999987754
No 4
>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin cofactors, metal binding; HET: ADP; 1.60A {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A* 1n07_A* 1n06_A*
Probab=16.09 E-value=1e+02 Score=22.96 Aligned_cols=19 Identities=5% Similarity=0.102 Sum_probs=16.4
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy15911 12 NRRFTNPEELETARVREEK 30 (131)
Q Consensus 12 ~R~FTspEEl~~q~~~e~~ 30 (131)
.+.|.|.|+|.+|+..+.+
T Consensus 123 E~kF~sle~L~~qI~~D~~ 141 (163)
T 1n08_A 123 ELNYAGLDKLIEDIHTDIR 141 (163)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 5679999999999987755
No 5
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=14.01 E-value=63 Score=22.44 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=17.4
Q ss_pred CCCCCCC------CCCcccCCCCHHHHHH
Q psy15911 1 MEGKYLN------HKGRNRRFTNPEELET 23 (131)
Q Consensus 1 ~RGk~~~------hKGr~R~FTspEEl~~ 23 (131)
+||||+- |=-|+--||.||--+.
T Consensus 46 lrgkyvafvl~ge~frrspafsvpesaqr 74 (87)
T 2bn8_A 46 LRGKYVAFVLMGESFLRSPAFTVPESAQR 74 (87)
T ss_dssp ETTEEEEBCCSSSCCCBCCCBSSHHHHHH
T ss_pred eccceEEEEEechhhccCCccCCcHHHHH
Confidence 3788864 6678889999987543
No 6
>3bnw_A Riboflavin kinase, putative; APO structure, structural genomics, structural genomics of P protozoa consortium, SGPP, transferase; 2.40A {Trypanosoma brucei}
Probab=13.89 E-value=1.2e+02 Score=23.04 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=16.4
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy15911 12 NRRFTNPEELETARVREEK 30 (131)
Q Consensus 12 ~R~FTspEEl~~q~~~e~~ 30 (131)
.+.|+|.|+|.+|+..+.+
T Consensus 127 E~kF~sle~L~~QI~~Di~ 145 (181)
T 3bnw_A 127 MGSFHSLQALVDTIKSDVQ 145 (181)
T ss_dssp CCCCSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 4679999999999988765
No 7
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=13.38 E-value=50 Score=25.71 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=9.9
Q ss_pred ccccccCCchhh
Q psy15911 43 KLIDVENPNRVV 54 (131)
Q Consensus 43 gLIEI~NPNr~~ 54 (131)
|++||+||+|--
T Consensus 242 g~~~v~n~~h~d 253 (301)
T 2qnr_A 242 GVVEVENPEHND 253 (301)
T ss_dssp EEEETTCTTTCS
T ss_pred ceEeeCCCccCc
Confidence 679999999853
No 8
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=9.71 E-value=68 Score=27.21 Aligned_cols=12 Identities=25% Similarity=0.222 Sum_probs=5.5
Q ss_pred cccccccCCchh
Q psy15911 42 EKLIDVENPNRV 53 (131)
Q Consensus 42 egLIEI~NPNr~ 53 (131)
-|+|||+||+|-
T Consensus 258 WG~~even~~h~ 269 (427)
T 2qag_B 258 WGTVQVENEAHC 269 (427)
T ss_dssp CCCCC-----CC
T ss_pred CceEEeCCCccc
Confidence 588999999985
No 9
>1rmv_A Ribgrass mosaic virus coat protein; tobamovirus, RMV cluster, coat protein (viral), complex (coat protein/RNA), helical virus; 2.90A {Ribgrass mosaic virus} SCOP: a.24.5.1
Probab=9.42 E-value=89 Score=23.94 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=10.4
Q ss_pred cccccccCCchhhh
Q psy15911 42 EKLIDVENPNRVVK 55 (131)
Q Consensus 42 egLIEI~NPNr~~k 55 (131)
--+||++||..+..
T Consensus 92 NRIIEVen~~nPtt 105 (157)
T 1rmv_A 92 NRIIETEEESRPSA 105 (157)
T ss_dssp CCCCCBSSSBCTTC
T ss_pred cceEEecCCCCCcH
Confidence 46899999985543
No 10
>1cgm_E Cucumber green mottle mosaic virus; helical virus; 3.40A {Cucumber green mottle mosaic virus} SCOP: a.24.5.1
Probab=9.22 E-value=87 Score=24.11 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=10.2
Q ss_pred cccccccCCchhhh
Q psy15911 42 EKLIDVENPNRVVK 55 (131)
Q Consensus 42 egLIEI~NPNr~~k 55 (131)
--+||++||.++..
T Consensus 92 NRIIEVen~~nPtt 105 (161)
T 1cgm_E 92 NRVIEVVDPSNPTT 105 (161)
T ss_dssp CCCCCCSSTTSSST
T ss_pred cceEEccCCCCCcH
Confidence 35799999975543
Done!