Query psy15911
Match_columns 131
No_of_seqs 122 out of 141
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 16:22:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15911.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15911hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nb9a_ b.43.5.1 (A:) Riboflav 16.5 46 0.0034 22.8 2.9 19 12-30 105-123 (147)
2 d1fsea_ a.4.6.2 (A:) Germinati 15.5 79 0.0057 17.9 3.4 26 73-108 2-27 (67)
3 d1n08a_ b.43.5.1 (A:) Riboflav 15.4 53 0.0039 22.6 3.0 19 12-30 115-133 (154)
4 d2b2ya1 b.34.13.2 (A:108-187) 14.4 92 0.0067 18.7 3.6 31 16-46 1-31 (80)
5 d2oa5a1 d.362.1.1 (A:7-102) Un 9.8 1.8E+02 0.013 18.8 4.1 14 73-86 35-48 (96)
6 d1l3la1 a.4.6.2 (A:170-234) Qu 9.6 1.3E+02 0.0098 16.8 3.1 26 73-108 2-27 (65)
7 d1rmva_ a.24.5.1 (A:) Ribgrass 7.5 57 0.0042 23.2 0.7 13 43-55 92-104 (156)
8 d2ffsa1 d.129.3.7 (A:1-151) Hy 7.4 50 0.0036 22.9 0.4 11 41-51 3-13 (151)
9 d1mlia_ d.58.4.1 (A:) Muconala 7.4 2.4E+02 0.017 17.9 3.9 29 73-102 12-40 (96)
10 d1xo8a_ b.1.25.1 (A:) Putative 6.3 57 0.0041 21.9 0.2 18 42-59 42-59 (151)
No 1
>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.52 E-value=46 Score=22.79 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.3
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy15911 12 NRRFTNPEELETARVREEK 30 (131)
Q Consensus 12 ~R~FTspEEl~~q~~~e~~ 30 (131)
...|.|+|+|.+|+..+-+
T Consensus 105 e~KF~s~~~L~~qI~~Di~ 123 (147)
T d1nb9a_ 105 EKNFDSLESLISAIQGDIE 123 (147)
T ss_dssp CCCCSSHHHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHH
Confidence 5679999999999987754
No 2
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=15.49 E-value=79 Score=17.87 Aligned_cols=26 Identities=38% Similarity=0.482 Sum_probs=18.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhccChHHHHHh
Q psy15911 73 APELSRREREEIEAQKATAHYQKLHAEGKTEQARAD 108 (131)
Q Consensus 73 ~~~lsRrERE~~ekq~a~~ry~klh~~gkT~eakaD 108 (131)
.|.||.||++= ..|..+|.+...=|+
T Consensus 2 ~p~LT~rE~~v----------l~l~~~G~s~~eIA~ 27 (67)
T d1fsea_ 2 KPLLTKREREV----------FELLVQDKTTKEIAS 27 (67)
T ss_dssp CCCCCHHHHHH----------HHHHTTTCCHHHHHH
T ss_pred CCCCCHHHHHH----------HHHHHccCCHHHHHH
Confidence 46899999984 447888888765443
No 3
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=15.42 E-value=53 Score=22.63 Aligned_cols=19 Identities=5% Similarity=0.102 Sum_probs=16.5
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy15911 12 NRRFTNPEELETARVREEK 30 (131)
Q Consensus 12 ~R~FTspEEl~~q~~~e~~ 30 (131)
.+.|.|.|+|.+|+..+.+
T Consensus 115 e~kF~s~e~L~~qI~~D~~ 133 (154)
T d1n08a_ 115 ELNYAGLDKLIEDIHTDIR 133 (154)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 5789999999999987765
No 4
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.37 E-value=92 Score=18.70 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy15911 16 TNPEELETARVREEKEKQWRAKAKGVEKLID 46 (131)
Q Consensus 16 TspEEl~~q~~~e~~~~e~~~k~kGVegLIE 46 (131)
+|||+|++..-..+...+......-|+.+|.
T Consensus 1 a~~e~~E~~~i~~E~~~e~~~e~~~VERIi~ 31 (80)
T d2b2ya1 1 ASPEDVEYYNCQQELTDDLHKQYQIVGRIIA 31 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHhHHhhhhhccCceeeEEEEE
Confidence 5899998874333222345556778888886
No 5
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=9.85 E-value=1.8e+02 Score=18.83 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=11.5
Q ss_pred CCCCchHHHHHHHH
Q psy15911 73 APELSRREREEIEA 86 (131)
Q Consensus 73 ~~~lsRrERE~~ek 86 (131)
+..||.++||.+=.
T Consensus 35 d~~LT~~qke~~I~ 48 (96)
T d2oa5a1 35 DSILTAAKRESIIV 48 (96)
T ss_dssp CCBCCHHHHHHHHH
T ss_pred CccCCHHHHHHHHH
Confidence 68999999997653
No 6
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=9.61 E-value=1.3e+02 Score=16.76 Aligned_cols=26 Identities=35% Similarity=0.318 Sum_probs=19.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhccChHHHHHh
Q psy15911 73 APELSRREREEIEAQKATAHYQKLHAEGKTEQARAD 108 (131)
Q Consensus 73 ~~~lsRrERE~~ekq~a~~ry~klh~~gkT~eakaD 108 (131)
.+.||.||++=+ .|-.+|+|...=|+
T Consensus 2 ~~~Lt~rE~~vl----------~l~~~G~s~~eIA~ 27 (65)
T d1l3la1 2 AAWLDPKEATYL----------RWIAVGKTMEEIAD 27 (65)
T ss_dssp CCCCCHHHHHHH----------HHHTTTCCHHHHHH
T ss_pred ccccCHHHHHHH----------HHHHhcCCHHHHHH
Confidence 368999999844 47888998875444
No 7
>d1rmva_ a.24.5.1 (A:) Ribgrass mosaic virus {Ribgrass mosaic virus [TaxId: 51680]}
Probab=7.45 E-value=57 Score=23.18 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=9.7
Q ss_pred ccccccCCchhhh
Q psy15911 43 KLIDVENPNRVVK 55 (131)
Q Consensus 43 gLIEI~NPNr~~k 55 (131)
-+||++||..+-.
T Consensus 92 RIIEVen~~nPtt 104 (156)
T d1rmva_ 92 RIIETEEESRPSA 104 (156)
T ss_dssp CCCCBSSSBCTTC
T ss_pred ceEEccCCCCCch
Confidence 4799999985543
No 8
>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.37 E-value=50 Score=22.91 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=8.8
Q ss_pred ccccccccCCc
Q psy15911 41 VEKLIDVENPN 51 (131)
Q Consensus 41 VegLIEI~NPN 51 (131)
.++||+|.+|-
T Consensus 3 feHlv~IN~p~ 13 (151)
T d2ffsa1 3 FEHLVQVNDRT 13 (151)
T ss_dssp EEEEEECCCCC
T ss_pred ceEEEecCCCC
Confidence 57899998883
No 9
>d1mlia_ d.58.4.1 (A:) Muconalactone isomerase, MLI {Pseudomonas putida [TaxId: 303]}
Probab=7.35 E-value=2.4e+02 Score=17.89 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=22.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhccCh
Q psy15911 73 APELSRREREEIEAQKATAHYQKLHAEGKT 102 (131)
Q Consensus 73 ~~~lsRrERE~~ekq~a~~ry~klh~~gkT 102 (131)
|..++-.|..+|.. +-+++-+.|+.+|+.
T Consensus 12 P~~m~~~e~~~i~a-~E~a~a~~Lq~~G~~ 40 (96)
T d1mlia_ 12 PVDMDPAKATQLKA-DEKELAQRLQREGTW 40 (96)
T ss_pred CCCCCHHHHHHHHH-HHHHHHHHHHhCCCc
Confidence 67888889888875 445666778888874
No 10
>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.29 E-value=57 Score=21.93 Aligned_cols=18 Identities=17% Similarity=0.027 Sum_probs=12.1
Q ss_pred cccccccCCchhhhcccc
Q psy15911 42 EKLIDVENPNRVVKKNKK 59 (131)
Q Consensus 42 egLIEI~NPNr~~kk~~K 59 (131)
.--+.|.|||-..-....
T Consensus 42 ~~~l~V~NPN~~~l~i~~ 59 (151)
T d1xo8a_ 42 LAKVSVTNPYSHSIPICE 59 (151)
T ss_dssp EEEEEEECSSSSCCCCEE
T ss_pred EEEEEEECCCCCceeeee
Confidence 344579999987765433
Done!