RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15911
         (131 letters)



>gnl|CDD|220653 pfam10252, PP28, Casein kinase substrate phosphoprotein PP28.  This
           domain is a region of 70 residues conserved in proteins
           from plants to humans and contains a serine/arginine
           rich motif. In rats the full protein is a casein kinase
           substrate, and this region contains phosphorylation
           sites for both cAMP-dependent protein kinase and casein
           kinase II.
          Length = 82

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 48  ENPNRVVKKNKKLSTLNEVVKGPTTAPELSRREREEIEAQKATAHYQKLHAEGKTEQARA 107
            NPNRV KK  + +   ++        ELSRREREEIE QKA   Y KLHA+GKTEQARA
Sbjct: 1   ANPNRVKKKRSQKAKEIDL----DDPVELSRREREEIEKQKARERYMKLHAQGKTEQARA 56

Query: 108 DLA 110
           DLA
Sbjct: 57  DLA 59


>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
           C-terminal domain.  This model describes the C-terminal
           domain, or longer subunit, of the Firmicutes type VII
           secretion protein EssC. This protein (homologous to EccC
           in Actinobacteria) and the WXG100 target proteins are
           the only homologous parts of type VII secretion between
           Firmicutes and Actinobacteria [Protein fate, Protein and
           peptide secretion and trafficking].
          Length = 1296

 Score = 28.4 bits (64), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 75  ELSRREREEIEAQKATAH---YQKLHAEGKTEQARADL-AQKDEAAQLKSAQ 122
           EL +R+R   E      H   YQKL+ +GK ++    L    DE A+LKS Q
Sbjct: 546 ELKKRQRLFGENN--VNHINQYQKLYKQGKAKEPMPHLFLISDEFAELKSEQ 595


>gnl|CDD|225039 COG2128, COG2128, Uncharacterized conserved protein [Function
           unknown].
          Length = 177

 Score = 27.5 bits (61), Expect = 2.0
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 62  TLNEVVKGPTTAPELSRREREEIE-AQKAT---------AHYQKLHAEGKTEQARADLAQ 111
            L  ++    +A  L  RER  +  A   T         AH+  L A G  ++   +L  
Sbjct: 97  DLAALLAWRDSAAFLDPRERAALAYAAALTINPCGAVSDAHFAALRAAGFDDEQILELVL 156


>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family
           aminotransferase.  This subfamily of pyridoxal
           phosphate-dependent enzymes includes known examples of
           both tyrosine aminotransferase from animals and
           nicotianamine aminotransferase from barley.
          Length = 403

 Score = 26.9 bits (60), Expect = 3.4
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 7/28 (25%)

Query: 31  EKQWRAKAKGVEKLID-------VENPN 51
           EK W     G+E L D       V NP+
Sbjct: 152 EKDWEIDLDGLESLADEKTVAIVVINPS 179


>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
           dehydrogenase MSR-1-like.  NAD(P)+-dependent aldehyde
           dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
           (MGR_2402) , and other similar sequences, are present in
           this CD.
          Length = 457

 Score = 26.6 bits (59), Expect = 5.2
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 86  AQKATAHYQKLHAE--GK--TEQARADLAQKDEAAQLKSAQTSKAL 127
           A+ A   +    A   GK     A A  A+ +E A+L + +T  AL
Sbjct: 28  AKAAFPEWAATPARERGKLLARIADALEARSEELARLLALETGNAL 73


>gnl|CDD|163691 cd08060, MPN_UPF0172, Mov34/MPN/PAD-1 family: UPF0172 family of
           unknown function includes neighbor of COX4 (Noc4p).
           This family includes Noc4p (neighbor of COX4; neighbor
           of Cytochrome c Oxidase 4; nucleolar complex associated
           4 homolog) which belongs to the family of unknown
           function, UPF0172, with MPN/JAMM-like domains. Proteins
           in this family are homologs of the NOC4 gene which is
           conserved in eukaryotic members including human, dog,
           mouse, rat, chicken, zebrafish, fruit fly, mosquito,
           S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa,
           A.thaliana, and rice. NOC4 highly expressed in the
           pancreas and moderately in liver, heart, lung, kidney,
           brain, skeletal muscle, and placenta. This nucleolar
           protein forms a complex with Nop14p that mediates
           maturation and nuclear export of 40S ribosomal subunits.
           This family of eukaryotic MPN-like domains lacks the key
           residues that coordinate a metal ion and therefore does
           not show catalytic isopeptidase activity.
          Length = 182

 Score = 25.7 bits (57), Expect = 6.5
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 12  NRRFTNPEELETARVREEKEKQWRAKAKGVEKLIDVENPNRVVKKN 57
           N + T   +     V ++K  +W+ K      L+  E+ N ++   
Sbjct: 112 NEKLTLDCKGNALVVYKDKGGRWKVKELRGINLLLWESANEILSAL 157


>gnl|CDD|234353 TIGR03788, marine_srt_targ, marine proteobacterial sortase target
           protein.  Members of this protein family are restricted
           to the Proteobacteria. Each contains a C-terminal
           sortase-recognition motif, transmembrane domain, and
           basic residues cluster at the the C-terminus, and is
           encoded adjacent to a sortase gene. This protein is
           frequently the only sortase target in its genome, which
           is as unusual its occurrence in Gram-negative rather
           than Gram-positive genomes. Many bacteria with this
           system are marine. In addition to the LPXTG signal,
           members carry a vault protein inter-alpha-trypsin
           inhibitor domain (pfam08487) and a von Willebrand factor
           type A domain (pfam00092).
          Length = 596

 Score = 25.8 bits (57), Expect = 7.6
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)

Query: 85  EAQKATAHYQKLHAEGK----TEQARADL 109
               A A Y++  AEGK     EQ R +L
Sbjct: 62  PKAAARAIYEQAKAEGKKAALVEQQRPNL 90


>gnl|CDD|226632 COG4154, FucU, Fucose dissimilation pathway protein FucU
          [Carbohydrate transport and metabolism].
          Length = 144

 Score = 25.4 bits (56), Expect = 7.6
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 65 EVVKGPTTAPELSRREREEIEAQ 87
           VV+G    P + R  R  IE  
Sbjct: 75 AVVEGDDLDPPVEREYRAAIELA 97


>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
          Length = 472

 Score = 25.7 bits (57), Expect = 8.4
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 25  RVREEKEKQWRAKAKG-VEKLIDVENPN 51
           + REEKEK+ +AK +G  E+ I  +N +
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKS 418


>gnl|CDD|178321 PLN02719, PLN02719, triacylglycerol lipase.
          Length = 518

 Score = 25.8 bits (56), Expect = 8.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 69 GPTTAPELSRREREEIEAQKATAHYQKLHAE 99
          G TTA ++ RR+ E  E+++    ++K+  E
Sbjct: 68 GLTTAEDIRRRDGEAKESKRLRDTWRKIQGE 98


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.305    0.121    0.319 

Gapped
Lambda     K      H
   0.267   0.0826    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,467,906
Number of extensions: 566879
Number of successful extensions: 637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 139
Length of query: 131
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 45
Effective length of database: 7,123,158
Effective search space: 320542110
Effective search space used: 320542110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 53 (24.0 bits)