RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15911
(131 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 3e-04
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 29/94 (30%)
Query: 26 VREEKEKQWRAKAKGVEKLIDVENPNRVVKKNKKLS-TL-----NEVVKGPTTAPE-LSR 78
+ ++Q V+ ++ N + + K++ +L N VV GP P+ L
Sbjct: 341 ISNLTQEQ-------VQDYVNKTNSH--LPAGKQVEISLVNGAKNLVVSGP---PQSLYG 388
Query: 79 REREEIEAQKATAHYQKLHAEGKTEQARADLAQK 112
+K A +Q+R +++
Sbjct: 389 LNL----------TLRKAKAPSGLDQSRIPFSER 412
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.026
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 13/38 (34%)
Query: 55 KKN-KKL-STLNEVVKGPTTAPELSRREREEIEAQKAT 90
K+ KKL ++L + +AP L A KAT
Sbjct: 19 KQALKKLQASLK--LYADDSAPAL---------AIKAT 45
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur
cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta
channel; HET: SAM LYS PLP; 2.10A {Clostridium
subterminale}
Length = 416
Score = 26.4 bits (58), Expect = 3.2
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 7 NHKGRNRRFTNPEELETARVREEKEKQWRAKAKGVEKLIDVENPN 51
N +G ++ P + + + GV L++ E
Sbjct: 357 NFEGVITTYSEPINYTPGCNCDVCTGKKKVHKVGVAGLLNGEGMA 401
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 26.1 bits (57), Expect = 4.6
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Query: 4 KYLNHKGRNRRFTNPEELETARVREEKEKQWRAKAKGVEKLIDVENPNRVVKKNKK---L 60
L +G + EE+ ++ ++ K K I+ P K
Sbjct: 11 SGLVPRGSH--MFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVN 68
Query: 61 STLNEV 66
T+ +
Sbjct: 69 DTIENL 74
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 25.7 bits (56), Expect = 6.5
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 13 RRFTNPEELETARVREEKEKQWRAKAKGVEKLIDVENPNRVVKKNKK---LSTLNEV 66
EE+ ++ ++ K K I+ P K T+ +
Sbjct: 18 SHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENL 74
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 25.5 bits (56), Expect = 6.6
Identities = 16/77 (20%), Positives = 21/77 (27%)
Query: 7 NHKGRNRRFTNPEELETARVREEKEKQWRAKAKGVEKLIDVENPNRVVKKNKKLSTLNEV 66
KG F PEE A R E K G E + L+ + +
Sbjct: 798 EKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGI 857
Query: 67 VKGPTTAPELSRREREE 83
V +R E
Sbjct: 858 VDLQDVVTVRYMGKRLE 874
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 25.2 bits (56), Expect = 6.7
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 77 SRREREEIEAQKATAHYQKLHAEGKTEQARADLAQKDEAAQLKSAQTSKALGK 129
+R EA TA +L A G + ADL+ + A +L + + +
Sbjct: 60 ARDA----EACADTA--TRLSAYGDCQAIPADLSSEAGARRL-AQALGELSAR 105
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 25.5 bits (55), Expect = 8.0
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 16 TNPEELETARVREEKEKQWRAKAKGVEKLI-DVENPNRVVKKNKKLSTLNE 65
E ++E KE V+N R++ + + + +
Sbjct: 847 EKERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIK 897
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease,
hydrolase, endonuclease; 1.50A {Enterobacteria phage T4}
PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Length = 305
Score = 25.1 bits (54), Expect = 8.1
Identities = 10/62 (16%), Positives = 22/62 (35%)
Query: 5 YLNHKGRNRRFTNPEELETARVREEKEKQWRAKAKGVEKLIDVENPNRVVKKNKKLSTLN 64
+ K R+ + E E + + A + K++ E+ K+N L +
Sbjct: 202 VASVKVRSDFWFTRVEGERTPSMKTSIVEAIANDREQAKVLLTESEYNRYKENLVLIDFD 261
Query: 65 EV 66
+
Sbjct: 262 YI 263
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 25.3 bits (55), Expect = 8.8
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 13 RRFTNPEELETARVREEKEKQWRAKAKGVEKLIDVENPNRVVKKNKK---LSTLNEV 66
EE+ ++ ++ K K I+ P K T+ +
Sbjct: 18 SHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENL 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.121 0.319
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,890,148
Number of extensions: 103549
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 35
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 52 (24.3 bits)