BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15912
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
Length = 632
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
Query: 90 SLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVR 149
+LS L GVF+P L GA +GRL+ ++ +F A I PG YA++GAAA GV R
Sbjct: 333 ALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNA--IVPGSYAVVGAAAFTAGVTR 390
Query: 150 MTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPL 209
+S +I+ E TG I +P++++++ A +G+ F LY+ + + +P +
Sbjct: 391 -ALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDR 449
Query: 210 SSNITARIVKSHPV 223
S +TAR + HP+
Sbjct: 450 SPEMTAREIM-HPI 462
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|B Chain B, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
Length = 473
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
Length = 473
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|2EXW|A Chain A, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|B Chain B, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
Length = 473
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|B Chain B, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
Length = 473
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
Length = 473
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
pdb|3EJZ|B Chain B, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
Length = 473
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
Length = 473
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|2EZ0|B Chain B, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
Length = 473
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
Length = 473
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|B Chain B, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
Length = 473
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTS|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|2FEE|A Chain A, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|B Chain B, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2H2P|A Chain A, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2P|B Chain B, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
Length = 465
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEC|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
Length = 465
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
Length = 465
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER
CLC-Ec1 From E.Coli
Length = 465
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|2H2S|A Chain A, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|B Chain B, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|4FG6|A Chain A, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|B Chain B, Structure Of Ecclc E148a Mutant In Glutamate
Length = 465
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
Length = 473
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+
Transporter
Length = 465
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQYH-LEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLWLPMIITGLGATLLAQF 438
>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|B Chain B, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 446
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 339 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 397
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 398 LEMTDNYQLILPMIITGLGATLLAQF 423
>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|B Chain B, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
Length = 444
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 338 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 396
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 397 LEMTDNYQLILPMIITGLGATLLAQF 422
>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|B Chain B, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
Length = 444
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I++
Sbjct: 338 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 396
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
+E T N LP+++T + A + F
Sbjct: 397 LEMTDNYQLILPMIITGLGATLLAQF 422
>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|C Chain C, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|D Chain D, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
Length = 473
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 99 GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
GG+F P L G G F + +FP+ ++ G +A+ G A + VR ++ +++
Sbjct: 354 GGIFAPMLALGTLLGTAFGMAAAVLFPQ-YHLEAGTFAIAGMGALMAASVRAPLTGIVLV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDFF 185
+E T N LP+++T + A + F
Sbjct: 413 LEMTDNYQLILPMIITCLGATLLAQFL 439
>pdb|2J9L|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2JA3|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
Length = 185
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 22/127 (17%)
Query: 348 RLVGLILRSQLIILIKHKIYKENQNWPDDQL--SSEIFHAEYPRYPSVNDLVVSENDRSF 405
RLVG +LR LII I EN D + +S I+ E+
Sbjct: 61 RLVGFVLRRDLIISI------ENARKKQDGVVSTSIIYFTEHSPPLPPY--------TPP 106
Query: 406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRXXXXXXXXXXXXGMITRKDLARYRVW 465
T+KL ++ SPF+V D T + V +FR LGLR G+IT+KD V
Sbjct: 107 TLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLR-QCLVTHNGRLLGIITKKD-----VL 160
Query: 466 RHGGRMG 472
+H +M
Sbjct: 161 KHIAQMA 167
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 71/150 (47%), Gaps = 15/150 (10%)
Query: 217 IVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE-PMTKHSSDGAEQSSAGSTDSHK 275
+ K + ++P TV +++L GFP++D + + SD + + S +
Sbjct: 11 MTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGR 70
Query: 276 GDTSH--KRDSSHKG-DASRK---ESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLS 329
+ S + DS+ K +A +K ++ G+LVG ++ +++ +E N D +
Sbjct: 71 TENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVV------EEKTNLED--AA 122
Query: 330 SEIFHAEYRCRPRIWSPGRLVGLILRSQLI 359
+ +YR P + S G+LVG+I R ++
Sbjct: 123 KILLETKYRRLPVVDSDGKLVGIITRGNVV 152
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 17/144 (11%)
Query: 217 IVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE-PMTKHSSDGAEQSSAGSTDSHK 275
+ K + ++P TV +++L GFP++D + + SD + DS
Sbjct: 11 MTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSD----YDLLALDS-- 64
Query: 276 GDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHA 335
GD++ K ++ + S+ + G+LVG ++ +++ +E N D + +
Sbjct: 65 GDSTWKTFNAVQKLLSK--TNGKLVGDLMTPAPLVV------EEKTNLED--AAKILLET 114
Query: 336 EYRCRPRIWSPGRLVGLILRSQLI 359
+YR P + S G+LVG+I R ++
Sbjct: 115 KYRRLPVVDSDGKLVGIITRGNVV 138
>pdb|3IBV|A Chain A, Karyopherin Cytosolic State
pdb|3IBV|B Chain B, Karyopherin Cytosolic State
pdb|3ICQ|T Chain T, Karyopherin Nuclear State
pdb|3ICQ|U Chain U, Karyopherin Nuclear State
Length = 980
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 280 HKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYR 338
K SS + AS KE L+S L +IK Y E+Q W DD S E AE++
Sbjct: 364 RKESSSKELSASLKE--------FLKSLLEAIIKKMKYDESQEWDDDPDSEE--EAEFQ 412
>pdb|1NC2|D Chain D, Crystal Structure Of Monoclonal Antibody 2d12.5 Fab
Complexed With Y- Dota
pdb|1NC4|D Chain D, Crystal Structure Of Monoclonal Antibody 2d12.5 Fab
Complexed With Gd- Dota
Length = 221
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 61 GVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSE----QLSDSGGVFIPCLLTGA------ 110
GV SGGG F+S+ N++K N K + E Q +D+ + C G+
Sbjct: 49 GVIWSGGGTAYTAAFISRLNIYKDNSKNQVFFEMNSLQANDTAMYY--CARRGSYPYNYF 106
Query: 111 -AWGRLFSLFLQSIF---PEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNIS 166
WG+ ++ + S P + PG A + LG +V+ + + +G++S
Sbjct: 107 DVWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS 166
Query: 167 FGL 169
G+
Sbjct: 167 SGV 169
>pdb|1NC2|B Chain B, Crystal Structure Of Monoclonal Antibody 2d12.5 Fab
Complexed With Y- Dota
pdb|1NC4|B Chain B, Crystal Structure Of Monoclonal Antibody 2d12.5 Fab
Complexed With Gd- Dota
Length = 221
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 61 GVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSE----QLSDSGGVFIPCLLTGA------ 110
GV SGGG F+S+ N++K N K + E Q +D+ + C G+
Sbjct: 49 GVIWSGGGTAYTAAFISRLNIYKDNSKNQVFFEMNSLQANDTAMYY--CARRGSYPYNYF 106
Query: 111 -AWGRLFSLFLQS---IFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNIS 166
WG+ ++ + S P + PG A + LG +V+ + + +G++S
Sbjct: 107 DVWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS 166
Query: 167 FGL 169
G+
Sbjct: 167 SGV 169
>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
pdb|4EEZ|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
Length = 348
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 219 KSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
K P++ R LE + +IID +KA G ++D
Sbjct: 305 KVKPIVATRKLEEINDIIDEMKAGKIEGRMVID 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,456,008
Number of Sequences: 62578
Number of extensions: 580127
Number of successful extensions: 1033
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1016
Number of HSP's gapped (non-prelim): 36
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)