Query psy15912
Match_columns 482
No_of_seqs 365 out of 2897
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 16:22:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474|consensus 100.0 4.7E-62 1E-66 501.8 22.9 351 4-480 411-761 (762)
2 PRK01862 putative voltage-gate 100.0 2.6E-39 5.7E-44 352.2 28.5 268 63-464 294-571 (574)
3 KOG0475|consensus 100.0 3.7E-37 8E-42 319.0 21.5 300 24-463 370-694 (696)
4 KOG0476|consensus 100.0 1.3E-34 2.7E-39 304.0 10.0 203 38-315 437-649 (931)
5 cd03685 ClC_6_like ClC-6-like 99.9 1.1E-21 2.3E-26 208.4 14.9 116 89-205 347-462 (466)
6 cd03684 ClC_3_like ClC-3-like 99.9 1.8E-21 3.9E-26 205.6 14.0 148 22-202 266-445 (445)
7 PRK01610 putative voltage-gate 99.9 2E-21 4.4E-26 203.6 14.0 134 63-197 276-417 (418)
8 cd01031 EriC ClC chloride chan 99.8 9.1E-21 2E-25 198.3 12.3 133 62-195 262-402 (402)
9 PRK05277 chloride channel prot 99.8 2.5E-20 5.4E-25 197.0 14.2 135 62-197 275-417 (438)
10 cd03683 ClC_1_like ClC-1-like 99.8 2.1E-20 4.6E-25 196.6 13.0 119 85-204 300-426 (426)
11 COG0038 EriC Chloride channel 99.8 4.6E-20 9.9E-25 194.5 15.0 141 62-203 289-437 (443)
12 cd01036 ClC_euk Chloride chann 99.8 3.8E-19 8.3E-24 186.6 11.2 107 85-191 301-416 (416)
13 cd01033 ClC_like Putative ClC 99.8 7.1E-19 1.5E-23 183.0 12.8 121 63-186 259-387 (388)
14 PF00654 Voltage_CLC: Voltage 99.8 9.9E-19 2.2E-23 180.0 12.9 131 21-184 225-355 (355)
15 COG3448 CBS-domain-containing 99.8 1.9E-17 4E-22 159.1 18.1 237 105-466 83-374 (382)
16 cd01034 EriC_like ClC chloride 99.8 1.6E-18 3.4E-23 180.6 11.8 125 60-191 260-390 (390)
17 cd03682 ClC_sycA_like ClC sycA 99.7 4.1E-17 8.8E-22 169.3 12.1 118 63-191 257-378 (378)
18 cd00400 Voltage_gated_ClC CLC 99.7 1.7E-16 3.6E-21 165.2 11.8 116 63-179 261-383 (383)
19 COG2524 Predicted transcriptio 99.7 5.3E-16 1.2E-20 146.8 12.8 122 210-463 169-290 (294)
20 PRK11543 gutQ D-arabinose 5-ph 99.6 3.3E-15 7.1E-20 151.7 15.0 146 187-462 165-318 (321)
21 PRK10892 D-arabinose 5-phospha 99.6 3.8E-15 8.3E-20 151.6 14.6 147 187-463 170-324 (326)
22 COG4109 Predicted transcriptio 99.6 2.3E-15 4.9E-20 148.1 8.7 209 95-468 85-310 (432)
23 PRK03655 putative ion channel 99.5 4.3E-14 9.3E-19 147.9 10.9 115 57-183 272-398 (414)
24 COG3620 Predicted transcriptio 99.5 1.3E-13 2.9E-18 121.7 12.0 122 211-464 63-184 (187)
25 PRK07807 inosine 5-monophospha 99.5 6.3E-14 1.4E-18 148.6 11.0 124 208-466 84-207 (479)
26 cd04641 CBS_pair_28 The CBS do 99.5 3.6E-13 7.9E-18 116.0 13.3 120 221-462 1-120 (120)
27 cd04619 CBS_pair_6 The CBS dom 99.5 4.4E-13 9.5E-18 114.5 12.9 111 223-461 3-113 (114)
28 cd04603 CBS_pair_KefB_assoc Th 99.5 4.5E-13 9.6E-18 114.1 12.8 54 408-461 57-110 (111)
29 TIGR03520 GldE gliding motilit 99.5 1.6E-11 3.5E-16 128.6 25.0 123 210-465 188-312 (408)
30 cd04618 CBS_pair_5 The CBS dom 99.5 6.5E-13 1.4E-17 111.1 11.6 45 417-461 52-97 (98)
31 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.1E-12 2.4E-17 113.2 12.4 122 221-461 2-123 (124)
32 cd04596 CBS_pair_DRTGG_assoc T 99.4 9.4E-13 2E-17 111.2 11.4 106 221-461 2-107 (108)
33 cd04608 CBS_pair_PALP_assoc Th 99.4 7.3E-13 1.6E-17 115.5 10.7 113 221-462 2-123 (124)
34 cd04617 CBS_pair_4 The CBS dom 99.4 2E-12 4.3E-17 111.2 12.7 111 222-461 2-117 (118)
35 cd04639 CBS_pair_26 The CBS do 99.4 2E-12 4.4E-17 109.3 12.4 110 222-462 2-111 (111)
36 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 2.2E-12 4.8E-17 109.2 12.5 111 222-461 2-113 (114)
37 PRK14869 putative manganese-de 99.4 5.6E-13 1.2E-17 145.0 10.3 202 213-464 68-304 (546)
38 cd04586 CBS_pair_BON_assoc Thi 99.4 1.6E-12 3.5E-17 114.4 11.4 53 408-461 82-134 (135)
39 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 4.4E-12 9.4E-17 106.6 13.2 107 221-461 2-108 (109)
40 PRK15094 magnesium/cobalt effl 99.4 2E-12 4.4E-17 129.5 12.9 125 210-465 64-190 (292)
41 cd04630 CBS_pair_17 The CBS do 99.4 4.8E-12 1E-16 107.9 13.4 112 222-461 2-113 (114)
42 cd04803 CBS_pair_15 The CBS do 99.4 3E-12 6.6E-17 110.1 12.1 121 222-462 2-122 (122)
43 cd04593 CBS_pair_EriC_assoc_ba 99.4 4.3E-12 9.3E-17 108.2 12.9 111 222-461 2-114 (115)
44 PRK07107 inosine 5-monophospha 99.4 1.2E-12 2.6E-17 139.7 11.6 149 188-466 66-222 (502)
45 cd04631 CBS_pair_18 The CBS do 99.4 3.6E-12 7.7E-17 110.1 12.5 124 222-462 2-125 (125)
46 cd04623 CBS_pair_10 The CBS do 99.4 6.4E-12 1.4E-16 106.2 13.4 111 222-461 2-112 (113)
47 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 5E-12 1.1E-16 106.0 12.4 54 409-462 53-106 (106)
48 cd04636 CBS_pair_23 The CBS do 99.4 4.3E-12 9.4E-17 111.3 12.4 54 408-462 79-132 (132)
49 cd04605 CBS_pair_MET2_assoc Th 99.4 8.4E-12 1.8E-16 105.3 13.6 108 221-461 2-109 (110)
50 cd04607 CBS_pair_NTP_transfera 99.4 6.9E-12 1.5E-16 106.6 13.1 109 223-461 4-112 (113)
51 cd04624 CBS_pair_11 The CBS do 99.4 8.7E-12 1.9E-16 105.6 13.4 110 222-461 2-111 (112)
52 cd04635 CBS_pair_22 The CBS do 99.4 4.8E-12 1E-16 108.9 11.7 54 408-461 68-121 (122)
53 cd04801 CBS_pair_M50_like This 99.4 5.8E-12 1.3E-16 107.2 12.0 54 408-461 58-113 (114)
54 cd04615 CBS_pair_2 The CBS dom 99.4 9.5E-12 2.1E-16 105.5 13.1 110 223-461 3-112 (113)
55 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 2.9E-12 6.2E-17 135.9 12.0 121 210-466 85-205 (475)
56 TIGR01137 cysta_beta cystathio 99.4 6.7E-12 1.5E-16 133.5 14.5 146 185-462 306-452 (454)
57 cd04629 CBS_pair_16 The CBS do 99.4 7.3E-12 1.6E-16 106.3 11.8 112 222-461 2-113 (114)
58 TIGR00400 mgtE Mg2+ transporte 99.4 3.2E-12 6.9E-17 135.7 11.8 124 210-468 128-256 (449)
59 cd04595 CBS_pair_DHH_polyA_Pol 99.4 1.3E-11 2.8E-16 104.2 13.3 108 221-461 2-109 (110)
60 cd04627 CBS_pair_14 The CBS do 99.4 1.4E-11 3.1E-16 106.5 13.7 120 222-460 2-121 (123)
61 TIGR01302 IMP_dehydrog inosine 99.4 4.8E-12 1E-16 134.2 12.4 123 212-465 79-202 (450)
62 cd04602 CBS_pair_IMPDH_2 This 99.3 1.2E-11 2.7E-16 105.4 12.6 54 408-461 58-113 (114)
63 cd04643 CBS_pair_30 The CBS do 99.3 1E-11 2.3E-16 105.6 12.0 115 222-462 2-116 (116)
64 cd04626 CBS_pair_13 The CBS do 99.3 1.3E-11 2.8E-16 104.4 12.5 109 222-461 2-110 (111)
65 PRK05567 inosine 5'-monophosph 99.3 6.5E-12 1.4E-16 134.5 13.2 118 214-465 88-206 (486)
66 cd04632 CBS_pair_19 The CBS do 99.3 1.4E-11 3E-16 107.2 12.7 125 222-462 2-128 (128)
67 cd04601 CBS_pair_IMPDH This cd 99.3 7.6E-12 1.6E-16 105.3 10.6 54 408-461 55-109 (110)
68 cd04614 CBS_pair_1 The CBS dom 99.3 1.2E-11 2.6E-16 102.8 11.6 45 417-461 51-95 (96)
69 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 1.4E-11 3.1E-16 104.3 12.2 112 222-462 3-114 (114)
70 cd04585 CBS_pair_ACT_assoc2 Th 99.3 1.6E-11 3.4E-16 105.0 12.4 54 408-461 68-121 (122)
71 cd04599 CBS_pair_GGDEF_assoc2 99.3 1.4E-11 3E-16 102.9 11.6 52 408-460 52-103 (105)
72 cd04637 CBS_pair_24 The CBS do 99.3 2.2E-11 4.8E-16 104.8 13.2 55 408-462 68-122 (122)
73 cd04620 CBS_pair_7 The CBS dom 99.3 2.2E-11 4.8E-16 103.7 12.9 54 408-461 59-114 (115)
74 cd04642 CBS_pair_29 The CBS do 99.3 1.9E-11 4.1E-16 106.3 12.7 51 411-461 75-125 (126)
75 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 2.7E-11 5.9E-16 102.1 13.3 109 222-461 2-110 (111)
76 cd04621 CBS_pair_8 The CBS dom 99.3 2.4E-11 5.1E-16 107.7 13.0 53 408-461 82-134 (135)
77 PTZ00314 inosine-5'-monophosph 99.3 6.9E-12 1.5E-16 134.0 11.4 123 214-467 97-221 (495)
78 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 2.9E-11 6.3E-16 101.9 12.9 109 222-461 2-110 (111)
79 cd04590 CBS_pair_CorC_HlyC_ass 99.3 3.2E-11 6.9E-16 101.9 13.0 110 221-461 1-110 (111)
80 cd04622 CBS_pair_9 The CBS dom 99.3 3.7E-11 8E-16 101.7 13.0 54 408-461 59-112 (113)
81 cd04588 CBS_pair_CAP-ED_DUF294 99.3 4.6E-11 1E-15 100.7 13.4 108 222-461 2-109 (110)
82 cd04587 CBS_pair_CAP-ED_DUF294 99.3 3.6E-11 7.7E-16 101.8 12.5 54 408-461 59-112 (113)
83 PLN02274 inosine-5'-monophosph 99.3 1.8E-11 3.9E-16 130.9 13.1 119 218-467 105-225 (505)
84 TIGR00393 kpsF KpsF/GutQ famil 99.3 1.8E-11 3.9E-16 121.1 12.1 114 212-455 154-268 (268)
85 cd04640 CBS_pair_27 The CBS do 99.3 2.4E-11 5.1E-16 105.8 11.5 54 408-461 65-125 (126)
86 COG0517 FOG: CBS domain [Gener 99.3 5.6E-11 1.2E-15 101.1 13.4 114 216-460 2-117 (117)
87 cd04800 CBS_pair_CAP-ED_DUF294 99.3 5.2E-11 1.1E-15 100.6 13.0 53 408-461 58-110 (111)
88 cd04610 CBS_pair_ParBc_assoc T 99.3 3.4E-11 7.4E-16 100.9 11.5 55 408-462 53-107 (107)
89 cd04609 CBS_pair_PALP_assoc2 T 99.3 4.5E-11 9.9E-16 100.4 12.0 109 222-462 2-110 (110)
90 cd04606 CBS_pair_Mg_transporte 99.3 2.2E-11 4.9E-16 102.8 10.1 55 408-462 54-108 (109)
91 cd04591 CBS_pair_EriC_assoc_eu 99.3 6.4E-11 1.4E-15 100.1 12.6 50 412-462 56-105 (105)
92 cd02205 CBS_pair The CBS domai 99.3 8.6E-11 1.9E-15 98.0 13.0 111 222-461 2-112 (113)
93 cd04625 CBS_pair_12 The CBS do 99.3 8.8E-11 1.9E-15 99.3 13.2 53 408-461 59-111 (112)
94 cd04589 CBS_pair_CAP-ED_DUF294 99.3 8.9E-11 1.9E-15 99.3 13.1 54 408-462 58-111 (111)
95 cd04633 CBS_pair_20 The CBS do 99.3 6.5E-11 1.4E-15 101.6 11.7 54 408-462 68-121 (121)
96 cd04802 CBS_pair_3 The CBS dom 99.2 1.6E-10 3.5E-15 97.7 13.6 110 222-461 2-111 (112)
97 PRK11573 hypothetical protein; 99.2 5.3E-10 1.1E-14 117.3 20.0 127 210-465 184-312 (413)
98 cd04584 CBS_pair_ACT_assoc Thi 99.2 1.3E-10 2.9E-15 99.5 12.7 53 408-461 68-120 (121)
99 PRK01862 putative voltage-gate 99.2 1.2E-11 2.6E-16 135.3 7.3 116 65-185 96-219 (574)
100 cd04594 CBS_pair_EriC_assoc_ar 99.2 1.4E-10 3.1E-15 97.2 12.0 53 408-461 51-103 (104)
101 cd04638 CBS_pair_25 The CBS do 99.2 2.1E-10 4.6E-15 96.2 11.6 53 408-461 53-105 (106)
102 cd04634 CBS_pair_21 The CBS do 99.2 3E-10 6.4E-15 101.4 13.0 53 408-461 90-142 (143)
103 COG2905 Predicted signal-trans 99.2 1.4E-10 3.1E-15 121.0 11.5 126 209-464 145-270 (610)
104 cd04598 CBS_pair_GGDEF_assoc T 99.2 3.5E-10 7.7E-15 96.7 11.7 54 408-461 62-118 (119)
105 COG1253 TlyC Hemolysins and re 99.1 9.4E-09 2E-13 108.7 22.2 125 210-465 203-329 (429)
106 cd00400 Voltage_gated_ClC CLC 99.1 4.7E-10 1E-14 116.9 11.5 118 64-186 61-187 (383)
107 PF00571 CBS: CBS domain CBS d 99.1 4.3E-10 9.3E-15 84.1 6.8 55 409-463 1-55 (57)
108 cd01031 EriC ClC chloride chan 99.0 7.2E-10 1.6E-14 116.2 9.1 120 61-185 59-187 (402)
109 COG2239 MgtE Mg/Co/Ni transpor 99.0 1E-09 2.2E-14 115.1 9.7 120 212-466 131-255 (451)
110 PRK05277 chloride channel prot 98.9 5.6E-09 1.2E-13 110.7 10.1 122 60-185 65-197 (438)
111 cd04592 CBS_pair_EriC_assoc_eu 98.9 1.7E-08 3.6E-13 89.5 10.7 38 411-448 82-119 (133)
112 KOG2550|consensus 98.8 6.8E-09 1.5E-13 104.6 7.6 125 221-476 116-240 (503)
113 COG4536 CorB Putative Mg2+ and 98.8 1.9E-08 4.1E-13 100.7 9.0 126 210-464 197-324 (423)
114 COG4535 CorC Putative Mg2+ and 98.7 6.9E-08 1.5E-12 91.1 8.1 128 210-468 64-193 (293)
115 PF00571 CBS: CBS domain CBS d 98.6 1.2E-07 2.5E-12 70.8 7.1 56 215-313 1-56 (57)
116 cd03682 ClC_sycA_like ClC sycA 98.6 3.1E-07 6.7E-12 95.6 11.5 117 65-186 55-181 (378)
117 TIGR01186 proV glycine betaine 98.5 1.4E-06 3E-11 90.1 13.9 56 408-464 303-358 (363)
118 PRK10070 glycine betaine trans 98.5 1.2E-06 2.6E-11 91.7 13.0 118 212-464 273-393 (400)
119 COG0038 EriC Chloride channel 98.5 8.9E-07 1.9E-11 93.9 10.9 122 60-186 85-216 (443)
120 KOG1764|consensus 98.4 1.8E-06 3.9E-11 89.6 12.6 127 222-469 238-364 (381)
121 cd01033 ClC_like Putative ClC 98.4 2.5E-06 5.4E-11 89.2 11.6 116 65-185 63-186 (388)
122 cd03685 ClC_6_like ClC-6-like 98.3 3.9E-07 8.4E-12 97.3 4.6 120 63-184 102-242 (466)
123 cd01036 ClC_euk Chloride chann 98.3 7.9E-07 1.7E-11 93.7 6.7 123 61-185 59-202 (416)
124 COG3448 CBS-domain-containing 98.3 5.2E-07 1.1E-11 87.8 3.9 59 406-464 244-302 (382)
125 cd04597 CBS_pair_DRTGG_assoc2 98.3 1.3E-06 2.9E-11 74.8 6.1 55 407-461 58-112 (113)
126 cd03684 ClC_3_like ClC-3-like 98.2 4.4E-06 9.6E-11 88.8 9.0 122 62-185 51-183 (445)
127 cd01034 EriC_like ClC chloride 98.1 4.9E-06 1.1E-10 87.0 7.6 117 64-184 51-181 (390)
128 PF00654 Voltage_CLC: Voltage 98.1 6.3E-06 1.4E-10 85.1 7.8 119 63-185 16-143 (355)
129 PRK01610 putative voltage-gate 98.1 1.5E-05 3.2E-10 84.1 10.6 115 65-185 78-200 (418)
130 COG2524 Predicted transcriptio 98.1 4.6E-06 1E-10 79.9 5.8 58 406-464 171-228 (294)
131 PRK14869 putative manganese-de 98.1 1.4E-06 2.9E-11 95.2 2.1 162 193-462 220-391 (546)
132 cd04641 CBS_pair_28 The CBS do 97.9 2.7E-05 5.9E-10 66.6 7.2 48 416-463 2-49 (120)
133 cd04618 CBS_pair_5 The CBS dom 97.9 2.7E-05 5.9E-10 64.8 6.4 47 416-462 2-49 (98)
134 cd03683 ClC_1_like ClC-1-like 97.9 2.1E-05 4.5E-10 83.3 6.8 124 61-184 67-202 (426)
135 TIGR00400 mgtE Mg2+ transporte 97.9 1.6E-05 3.4E-10 84.7 5.8 60 213-315 195-254 (449)
136 PRK03655 putative ion channel 97.9 0.00014 3E-09 76.6 12.5 90 89-185 107-203 (414)
137 smart00116 CBS Domain in cysta 97.9 4.5E-05 9.8E-10 53.1 6.0 46 417-462 2-47 (49)
138 cd04597 CBS_pair_DRTGG_assoc2 97.8 6.3E-05 1.4E-09 64.3 7.9 41 213-253 58-98 (113)
139 COG3620 Predicted transcriptio 97.8 1.6E-05 3.6E-10 70.9 4.3 60 406-466 64-123 (187)
140 PRK11543 gutQ D-arabinose 5-ph 97.8 3E-05 6.4E-10 78.8 6.3 57 407-463 197-255 (321)
141 cd04592 CBS_pair_EriC_assoc_eu 97.8 7.1E-05 1.5E-09 66.2 7.9 49 416-464 2-50 (133)
142 cd04614 CBS_pair_1 The CBS dom 97.8 5.8E-05 1.3E-09 62.4 6.5 47 416-462 2-48 (96)
143 PRK10892 D-arabinose 5-phospha 97.8 4.3E-05 9.4E-10 77.9 6.5 58 406-463 201-260 (326)
144 cd04608 CBS_pair_PALP_assoc Th 97.7 0.00012 2.6E-09 63.5 7.8 50 415-464 2-51 (124)
145 cd04624 CBS_pair_11 The CBS do 97.7 0.00012 2.6E-09 61.4 7.3 48 416-463 2-49 (112)
146 cd04582 CBS_pair_ABC_OpuCA_ass 97.7 0.00012 2.6E-09 60.8 6.7 48 415-462 1-48 (106)
147 cd04613 CBS_pair_SpoIVFB_EriC_ 97.7 0.0001 2.2E-09 61.8 6.3 49 415-463 1-49 (114)
148 cd04605 CBS_pair_MET2_assoc Th 97.7 0.00014 3E-09 60.8 7.1 49 415-463 2-50 (110)
149 TIGR00393 kpsF KpsF/GutQ famil 97.7 6.4E-05 1.4E-09 74.2 5.8 58 406-463 154-212 (268)
150 cd04603 CBS_pair_KefB_assoc Th 97.6 0.00011 2.5E-09 62.0 6.1 41 213-253 56-96 (111)
151 cd04600 CBS_pair_HPP_assoc Thi 97.6 0.00017 3.7E-09 61.7 6.9 50 414-463 1-50 (124)
152 cd04623 CBS_pair_10 The CBS do 97.6 0.00022 4.8E-09 59.6 7.3 49 416-464 2-50 (113)
153 cd04621 CBS_pair_8 The CBS dom 97.6 0.00016 3.6E-09 63.7 6.4 49 416-464 2-50 (135)
154 cd04619 CBS_pair_6 The CBS dom 97.6 0.00019 4.1E-09 60.8 6.5 42 212-253 58-99 (114)
155 cd04617 CBS_pair_4 The CBS dom 97.5 0.00025 5.3E-09 60.5 7.1 49 416-464 2-50 (118)
156 cd04593 CBS_pair_EriC_assoc_ba 97.5 0.00025 5.4E-09 59.9 6.8 50 415-464 1-50 (115)
157 cd04643 CBS_pair_30 The CBS do 97.5 0.00024 5.1E-09 59.9 6.7 49 416-464 2-50 (116)
158 cd04586 CBS_pair_BON_assoc Thi 97.5 0.00019 4.1E-09 62.8 6.2 49 415-463 2-50 (135)
159 cd04626 CBS_pair_13 The CBS do 97.5 0.0003 6.5E-09 59.0 6.8 49 416-464 2-50 (111)
160 cd04642 CBS_pair_29 The CBS do 97.5 0.00019 4.2E-09 61.9 5.6 49 416-464 2-50 (126)
161 cd04583 CBS_pair_ABC_OpuCA_ass 97.5 0.00034 7.4E-09 58.1 7.0 49 415-463 2-50 (109)
162 TIGR01137 cysta_beta cystathio 97.5 0.0002 4.4E-09 76.3 7.0 59 406-464 334-392 (454)
163 cd04801 CBS_pair_M50_like This 97.5 0.00027 5.8E-09 59.6 6.3 49 416-464 2-51 (114)
164 cd04640 CBS_pair_27 The CBS do 97.5 0.00031 6.7E-09 60.7 6.7 46 416-461 2-47 (126)
165 PRK05567 inosine 5'-monophosph 97.5 0.00054 1.2E-08 73.8 10.0 57 213-312 147-204 (486)
166 cd04632 CBS_pair_19 The CBS do 97.5 0.00036 7.7E-09 60.3 7.1 47 416-462 2-48 (128)
167 cd04607 CBS_pair_NTP_transfera 97.4 0.00042 9E-09 58.4 7.2 48 416-463 3-50 (113)
168 cd04631 CBS_pair_18 The CBS do 97.4 0.00029 6.3E-09 60.3 6.3 50 415-464 1-51 (125)
169 cd04630 CBS_pair_17 The CBS do 97.4 0.00036 7.9E-09 58.9 6.7 48 416-463 2-50 (114)
170 cd04615 CBS_pair_2 The CBS dom 97.4 0.00037 7.9E-09 58.5 6.7 47 416-462 2-48 (113)
171 cd04635 CBS_pair_22 The CBS do 97.4 0.00028 6.2E-09 60.1 5.9 48 415-462 1-48 (122)
172 cd04612 CBS_pair_SpoIVFB_EriC_ 97.4 0.00038 8.2E-09 58.1 6.5 49 415-464 1-49 (111)
173 cd04629 CBS_pair_16 The CBS do 97.4 0.00035 7.7E-09 58.6 6.3 49 415-463 1-49 (114)
174 cd04636 CBS_pair_23 The CBS do 97.4 0.00029 6.3E-09 61.3 5.9 49 416-464 2-50 (132)
175 cd04803 CBS_pair_15 The CBS do 97.4 0.00037 8E-09 59.4 6.2 48 416-463 2-49 (122)
176 cd04639 CBS_pair_26 The CBS do 97.4 0.00036 7.9E-09 58.3 6.0 48 416-463 2-49 (111)
177 PRK07807 inosine 5-monophospha 97.4 0.00032 7E-09 75.0 6.9 55 407-461 89-143 (479)
178 cd04627 CBS_pair_14 The CBS do 97.4 0.00042 9.1E-09 59.4 6.3 48 416-463 2-50 (123)
179 cd02205 CBS_pair The CBS domai 97.4 0.00066 1.4E-08 55.9 7.2 50 416-465 2-51 (113)
180 cd04584 CBS_pair_ACT_assoc Thi 97.4 0.00053 1.1E-08 58.2 6.8 48 416-463 2-49 (121)
181 cd04588 CBS_pair_CAP-ED_DUF294 97.3 0.00064 1.4E-08 56.7 7.1 48 415-463 1-48 (110)
182 cd04596 CBS_pair_DRTGG_assoc T 97.3 0.0005 1.1E-08 57.4 6.2 47 416-462 3-49 (108)
183 cd04590 CBS_pair_CorC_HlyC_ass 97.3 0.00069 1.5E-08 56.6 7.1 49 416-464 2-51 (111)
184 cd04595 CBS_pair_DHH_polyA_Pol 97.3 0.00073 1.6E-08 56.5 7.0 48 415-463 2-49 (110)
185 cd04609 CBS_pair_PALP_assoc2 T 97.3 0.00059 1.3E-08 56.7 6.4 47 416-463 2-48 (110)
186 COG2905 Predicted signal-trans 97.3 0.00031 6.6E-09 74.4 5.4 60 408-467 150-209 (610)
187 cd04585 CBS_pair_ACT_assoc2 Th 97.3 0.00066 1.4E-08 57.4 6.5 48 416-464 2-49 (122)
188 cd04637 CBS_pair_24 The CBS do 97.3 0.00078 1.7E-08 57.4 6.9 47 416-463 2-48 (122)
189 cd04587 CBS_pair_CAP-ED_DUF294 97.3 0.00096 2.1E-08 55.9 7.3 47 416-463 2-48 (113)
190 cd04611 CBS_pair_PAS_GGDEF_DUF 97.3 0.00093 2E-08 55.7 7.0 48 416-464 2-49 (111)
191 TIGR03520 GldE gliding motilit 97.2 0.00066 1.4E-08 71.5 7.1 57 407-463 191-250 (408)
192 cd04622 CBS_pair_9 The CBS dom 97.2 0.00095 2.1E-08 55.9 6.6 46 415-461 1-46 (113)
193 cd04800 CBS_pair_CAP-ED_DUF294 97.2 0.001 2.3E-08 55.5 6.8 47 415-462 1-47 (111)
194 cd04620 CBS_pair_7 The CBS dom 97.2 0.00074 1.6E-08 56.9 5.8 42 212-253 57-100 (115)
195 cd04606 CBS_pair_Mg_transporte 97.2 0.00088 1.9E-08 56.0 6.2 57 212-311 52-108 (109)
196 cd04634 CBS_pair_21 The CBS do 97.2 0.00077 1.7E-08 59.8 6.1 49 415-464 1-49 (143)
197 cd04589 CBS_pair_CAP-ED_DUF294 97.2 0.0013 2.7E-08 55.1 7.0 47 416-463 2-48 (111)
198 PRK15094 magnesium/cobalt effl 97.2 0.00085 1.8E-08 67.5 6.9 57 407-463 67-126 (292)
199 cd04599 CBS_pair_GGDEF_assoc2 97.1 0.0011 2.5E-08 54.6 6.4 46 416-462 2-47 (105)
200 KOG1764|consensus 97.1 0.0022 4.7E-08 66.8 9.6 48 416-463 238-285 (381)
201 cd04598 CBS_pair_GGDEF_assoc T 97.1 0.0011 2.4E-08 56.1 6.2 47 416-463 2-49 (119)
202 cd04625 CBS_pair_12 The CBS do 97.1 0.0011 2.4E-08 55.4 6.1 40 213-252 58-97 (112)
203 cd04604 CBS_pair_KpsF_GutQ_ass 97.1 0.0011 2.4E-08 55.5 5.8 41 213-253 59-99 (114)
204 TIGR01302 IMP_dehydrog inosine 97.1 0.001 2.2E-08 71.0 6.8 55 408-462 81-138 (450)
205 cd04610 CBS_pair_ParBc_assoc T 97.1 0.0015 3.3E-08 54.1 6.5 41 213-253 52-92 (107)
206 cd04633 CBS_pair_20 The CBS do 97.1 0.0015 3.1E-08 55.6 6.5 47 416-463 2-48 (121)
207 COG0517 FOG: CBS domain [Gener 97.0 0.0022 4.9E-08 53.9 7.5 55 412-467 4-58 (117)
208 cd04602 CBS_pair_IMPDH_2 This 97.0 0.0015 3.2E-08 55.2 6.2 46 416-461 3-51 (114)
209 cd04601 CBS_pair_IMPDH This cd 97.0 0.0017 3.6E-08 54.0 6.1 47 415-461 2-48 (110)
210 cd04802 CBS_pair_3 The CBS dom 97.0 0.0024 5.3E-08 53.3 6.9 48 415-463 1-48 (112)
211 cd04594 CBS_pair_EriC_assoc_ar 96.9 0.0026 5.6E-08 52.8 6.4 44 418-462 4-47 (104)
212 smart00116 CBS Domain in cysta 96.9 0.0035 7.6E-08 43.2 6.1 47 223-312 2-48 (49)
213 PRK07107 inosine 5-monophospha 96.8 0.0025 5.4E-08 68.7 7.2 58 212-312 160-219 (502)
214 TIGR01303 IMP_DH_rel_1 IMP deh 96.8 0.0027 5.9E-08 67.9 7.4 59 213-314 146-204 (475)
215 PTZ00314 inosine-5'-monophosph 96.7 0.0027 5.9E-08 68.4 6.7 53 408-460 97-152 (495)
216 cd04591 CBS_pair_EriC_assoc_eu 96.7 0.0031 6.7E-08 52.8 5.7 47 417-463 4-53 (105)
217 cd04638 CBS_pair_25 The CBS do 96.7 0.0048 1E-07 51.1 6.7 46 417-462 3-48 (106)
218 PLN02274 inosine-5'-monophosph 96.7 0.0039 8.5E-08 67.3 7.6 61 212-315 162-224 (505)
219 TIGR03415 ABC_choXWV_ATP choli 96.7 0.006 1.3E-07 63.6 8.5 53 409-464 328-380 (382)
220 COG4109 Predicted transcriptio 96.5 0.0066 1.4E-07 61.1 7.0 64 209-315 245-308 (432)
221 COG4175 ProV ABC-type proline/ 96.3 0.0073 1.6E-07 60.5 6.1 52 412-464 332-383 (386)
222 COG2239 MgtE Mg/Co/Ni transpor 95.9 0.015 3.2E-07 61.7 6.2 62 212-316 195-256 (451)
223 PRK11573 hypothetical protein; 95.4 0.04 8.7E-07 58.2 7.2 57 407-463 187-246 (413)
224 TIGR01186 proV glycine betaine 95.0 0.061 1.3E-06 55.8 7.1 58 214-315 303-360 (363)
225 COG1253 TlyC Hemolysins and re 94.6 0.077 1.7E-06 56.3 7.0 60 407-466 206-268 (429)
226 KOG0474|consensus 94.5 0.015 3.3E-07 62.5 1.3 120 64-183 163-301 (762)
227 PRK10070 glycine betaine trans 93.1 0.23 5E-06 52.2 7.0 58 214-315 338-395 (400)
228 KOG2550|consensus 92.3 0.18 4E-06 51.9 4.7 58 212-312 170-227 (503)
229 KOG0475|consensus 91.4 0.11 2.4E-06 56.2 2.2 97 65-163 156-260 (696)
230 KOG0476|consensus 89.1 0.48 1E-05 52.5 4.6 120 59-179 160-294 (931)
231 COG1125 OpuBA ABC-type proline 88.3 0.83 1.8E-05 44.9 5.2 41 422-462 268-308 (309)
232 COG4535 CorC Putative Mg2+ and 87.5 0.31 6.7E-06 46.9 1.7 58 407-464 67-127 (293)
233 KOG2118|consensus 81.3 2.5 5.4E-05 45.8 5.5 52 407-459 273-324 (498)
234 TIGR03415 ABC_choXWV_ATP choli 76.9 5.3 0.00012 41.8 6.2 53 215-313 328-380 (382)
235 COG4175 ProV ABC-type proline/ 72.4 7.3 0.00016 39.6 5.5 53 218-314 332-384 (386)
236 PF04982 HPP: HPP family; Int 54.8 58 0.0013 28.1 7.2 79 105-183 26-108 (120)
237 COG4536 CorB Putative Mg2+ and 53.8 32 0.00069 35.7 6.1 51 221-314 275-325 (423)
238 COG1125 OpuBA ABC-type proline 48.4 32 0.00069 34.2 5.0 60 208-310 244-307 (309)
239 KOG4112|consensus 46.3 51 0.0011 27.2 5.0 18 105-122 31-48 (101)
240 PF04550 Phage_holin_2: Phage 41.8 1.6E+02 0.0035 24.1 7.2 67 42-147 8-74 (89)
241 KOG4267|consensus 35.8 82 0.0018 26.8 4.9 45 103-149 28-72 (110)
242 COG5336 Uncharacterized protei 32.4 97 0.0021 26.4 4.8 43 106-149 52-94 (116)
243 PF07456 Hpre_diP_synt_I: Hept 31.7 3.9E+02 0.0084 24.1 10.2 15 99-113 61-75 (148)
244 COG2216 KdpB High-affinity K+ 30.8 69 0.0015 34.8 4.5 41 424-465 413-453 (681)
245 PF05198 IF3_N: Translation in 27.4 97 0.0021 24.6 3.9 26 438-463 12-37 (76)
246 PF13365 Trypsin_2: Trypsin-li 24.5 52 0.0011 27.0 2.0 18 436-453 103-120 (120)
247 PF12732 YtxH: YtxH-like prote 24.3 76 0.0016 24.7 2.7 19 102-120 1-19 (74)
248 PF14827 Cache_3: Sensory doma 24.2 74 0.0016 26.9 2.9 17 440-456 93-109 (116)
249 COG4132 ABC-type uncharacteriz 23.8 2.6E+02 0.0057 27.0 6.6 49 105-157 68-116 (282)
250 COG4129 Predicted membrane pro 22.9 3.3E+02 0.0071 28.0 7.7 83 102-185 56-147 (332)
251 PF04632 FUSC: Fusaric acid re 22.2 4.2E+02 0.0091 29.4 9.2 89 97-185 41-149 (650)
252 PRK11388 DNA-binding transcrip 22.0 1.8E+02 0.0039 32.5 6.2 38 415-455 125-162 (638)
253 TIGR01667 YCCS_YHJK integral m 21.5 4.9E+02 0.011 29.7 9.5 20 107-126 434-453 (701)
254 PF05817 Ribophorin_II: Oligos 21.4 2.1E+02 0.0046 32.2 6.4 36 112-147 591-626 (636)
255 COG3329 Predicted permease [Ge 20.8 3.4E+02 0.0075 27.6 7.0 71 102-175 71-142 (372)
256 TIGR02865 spore_II_E stage II 20.0 9.3E+02 0.02 27.7 11.4 38 108-149 197-234 (764)
No 1
>KOG0474|consensus
Probab=100.00 E-value=4.7e-62 Score=501.81 Aligned_cols=351 Identities=49% Similarity=0.870 Sum_probs=312.0
Q ss_pred CceeecCCCccchHHHHHccCchHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhccccccc
Q psy15912 4 AVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWK 83 (482)
Q Consensus 4 ~~~~~c~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~~~~~ 83 (482)
..+|+||+|+|||+|++||+.++++|++|||++.+.|+..+|.+|+++|++++++|||+.+|
T Consensus 411 ~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~~ef~~~tL~iFfv~yf~L~~~TfGi~vp------------------ 472 (762)
T KOG0474|consen 411 CPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPTNEFGILTLAIFFVLYFFLACWTFGIAVP------------------ 472 (762)
T ss_pred CccccCCCCchhHHHHHHcCCcHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhccccc------------------
Confidence 35689999999999999999999999999999889999999999999999999999999999
Q ss_pred cCCCcccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhC
Q psy15912 84 SNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATG 163 (482)
Q Consensus 84 ~~~~~~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg 163 (482)
.|+|+|++.+||+.||++|.++..++ +++|+.||++|+||++||++||++|.+||++|+|
T Consensus 473 ---------------sGlFiP~iL~GAa~GRlvg~~l~~~~----~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T- 532 (762)
T KOG0474|consen 473 ---------------SGLFIPVILTGAAYGRLVGMLLGSYT----NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT- 532 (762)
T ss_pred ---------------ccchhHHHHhhHHHHHHHHHHHHHhh----ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-
Confidence 99999999999999999999998776 3799999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHhhhcCCChhHHHHHHcCCCCCCCCCCCCccccchhhcccCCeeEecCCCCHHHHHHHHHhCC
Q psy15912 164 NISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATS 243 (482)
Q Consensus 164 ~~~~~~Pl~ia~~ia~~v~~~~~~siy~~~L~~~g~p~l~~~~~~~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~ 243 (482)
+..+.+|+|++.++|++|++.|++++||.+++.+|+|+++.++++.+++++|+|+|++++++++..++++.++++|+++.
T Consensus 533 n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~ 612 (762)
T KOG0474|consen 533 NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTN 612 (762)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCC
Q psy15912 244 HNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNW 323 (482)
Q Consensus 244 ~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~ 323 (482)
||+|||||+.+. .+.+++.|+|.|++++.+++++.+.+...+
T Consensus 613 HngFPVvd~~~~--------------------------------------~~~~~l~GlILRshl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 613 HNGFPVVDEPPS--------------------------------------NEAGRLHGLILRSHLLVLLKKRVFVEESRS 654 (762)
T ss_pred cCCCccccCCCC--------------------------------------ccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence 999999998631 001479999999999998887654322111
Q ss_pred CCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCcccc
Q psy15912 324 PDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDR 403 (482)
Q Consensus 324 p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (482)
..+ |+. .+...+++.+++.++++++.++++++
T Consensus 655 ~~~----------------------------------------------~~~--~~~~~~~d~a~r~~~i~dv~lt~~e~ 686 (762)
T KOG0474|consen 655 TFD----------------------------------------------LPV--RRKFTFRDFAKREPSIEDVHLTSEEM 686 (762)
T ss_pred ccC----------------------------------------------cch--hhcCCHHHhhhcCCchhhhhcchHhH
Confidence 000 111 12234455567888999999999999
Q ss_pred ccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhhcccccccccccccc
Q psy15912 404 SFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISS 480 (482)
Q Consensus 404 ~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~~~~~~~~~~~~~~~ 480 (482)
.+++|+.++|+++|++|++++++.+++.+||+.|+||+.||++.++++||+||+|+..++. .+....+++++++.
T Consensus 687 ~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~~--l~~~~~v~~~~~~~ 761 (762)
T KOG0474|consen 687 EMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYRI--LGLEPHVDELKMGK 761 (762)
T ss_pred hhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHHH--hccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999998873 33345567777654
No 2
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=2.6e-39 Score=352.18 Aligned_cols=268 Identities=20% Similarity=0.296 Sum_probs=235.6
Q ss_pred cccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q psy15912 63 SVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY 135 (482)
Q Consensus 63 ~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~ 135 (482)
.+.|+||+.++.+++++..|.. +.|+ |++|+|+|++||+|+|++++||++|+++|.+++.++|... ..|..|
T Consensus 294 ~~~g~G~~~i~~~~~~~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~-~~~~~~ 372 (574)
T PRK01862 294 EVWGNGYSVVNTILHAPWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGHT-SAPFAY 372 (574)
T ss_pred HHhcCCHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCcc-cchHHH
Confidence 5679999999999999877643 3555 9999999999999999999999999999999998777642 467889
Q ss_pred HHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcC-CChhHHHHHHcCCCCCCCCCCCCccccc
Q psy15912 136 ALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLSGIPLLAWDPPPLSSNIT 214 (482)
Q Consensus 136 a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~-~siy~~~L~~~g~p~l~~~~~~~l~~l~ 214 (482)
+++||+|++++++|+|++++++++|+|+++.+++|+|+++++|+++++.++ +++|+.++++++.+ .+.+.++.++
T Consensus 373 a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~~----~~~~~L~~~~ 448 (574)
T PRK01862 373 AMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQDE----AERERLRTTQ 448 (574)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhcccc----chhhHHhhCc
Confidence 999999999999999999999999999999999999999999999999885 89999999988743 2456788999
Q ss_pred hhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q psy15912 215 ARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKE 294 (482)
Q Consensus 215 a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (482)
++|+|.+++.+++++++++++.+.+++++++.+||+|++
T Consensus 449 V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~----------------------------------------- 487 (574)
T PRK01862 449 MRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD----------------------------------------- 487 (574)
T ss_pred HHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-----------------------------------------
Confidence 999999999999999999999999999999999999975
Q ss_pred CCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCC
Q psy15912 295 SPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWP 374 (482)
Q Consensus 295 ~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~ 374 (482)
++++|+|+.+|+.+.+....
T Consensus 488 --g~lvGiVt~~dL~~~l~~~~---------------------------------------------------------- 507 (574)
T PRK01862 488 --GRFRGAVALKDITSDLLDKR---------------------------------------------------------- 507 (574)
T ss_pred --CeEEEEEEHHHHHHHhhccc----------------------------------------------------------
Confidence 69999999999876443210
Q ss_pred CCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC--CeEEE
Q psy15912 375 DDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN--NHVVG 452 (482)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~--g~lvG 452 (482)
.....+++++|++++.++++++++.++.+.|.+.+.+++||+|++ ++++|
T Consensus 508 ----------------------------~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liG 559 (574)
T PRK01862 508 ----------------------------DTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAG 559 (574)
T ss_pred ----------------------------ccccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEE
Confidence 000126788999999999999999999999999999999999876 58999
Q ss_pred EEeHHHhHHHHH
Q psy15912 453 MITRKDLARYRV 464 (482)
Q Consensus 453 IITr~DLl~~~~ 464 (482)
+||++|++++..
T Consensus 560 vIt~~DIl~~l~ 571 (574)
T PRK01862 560 VVYKTSLLDAYR 571 (574)
T ss_pred EEEHHHHHHHHH
Confidence 999999998753
No 3
>KOG0475|consensus
Probab=100.00 E-value=3.7e-37 Score=318.95 Aligned_cols=300 Identities=31% Similarity=0.552 Sum_probs=236.9
Q ss_pred CchHHHHHHhcCCC--Cc---------hhHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhccccccccCCCccccc
Q psy15912 24 VPEKSVRTMLHDPK--GA---------FGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLS 92 (482)
Q Consensus 24 ~~~~~i~~l~~~~~--~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~~~~~~~~~~~~~~ 92 (482)
++...+..||++.. .. -..+.|+..+++|++++++++|+++|
T Consensus 370 ~~~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP--------------------------- 422 (696)
T KOG0475|consen 370 NMSELITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVP--------------------------- 422 (696)
T ss_pred hHHHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCc---------------------------
Confidence 55566777887522 11 12677888899999999999999999
Q ss_pred ccCCCCcceehHHHHHHHHHHHHHHHHHHHhcC-------CCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCc
Q psy15912 93 EQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFP-------EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNI 165 (482)
Q Consensus 93 ~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~-------~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~ 165 (482)
+|+|+|||++||+.|+++|.+..++++ ...++.|++||++||||.++|++|+|++.+||++|+||++
T Consensus 423 ------~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l 496 (696)
T KOG0475|consen 423 ------AGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGAL 496 (696)
T ss_pred ------cceecchHHHHHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCcc
Confidence 999999999999999999988777765 2346889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhcC-CChhHHHHHHcCCCCCCCCCCCCccccchhhcccC---C--eeEecCC-CCHHHHHHH
Q psy15912 166 SFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSH---P--VICLRPL-ETVGNIIDV 238 (482)
Q Consensus 166 ~~~~Pl~ia~~ia~~v~~~~~-~siy~~~L~~~g~p~l~~~~~~~l~~l~a~dvM~~---~--~~~l~~~-~~i~~~~~~ 238 (482)
++++|+|+++++++|+++.++ .++||.+++.+|+|+++.++... ..-+.++|.. + ...+..+ ++++++..+
T Consensus 497 ~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l~~k~e~~--~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~ 574 (696)
T KOG0475|consen 497 NYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFLDSKSEFS--STLAIPVMEPCRSESCLIVITQDSMTLEDLESL 574 (696)
T ss_pred eeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCcccccccc--cchhhhhhchhcCchhheeccccceeHHHHHHH
Confidence 999999999999999999887 68999999999999997654333 3334555542 3 5555554 899999999
Q ss_pred HHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhc
Q psy15912 239 LKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYK 318 (482)
Q Consensus 239 l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~ 318 (482)
+.++.+++||||-+++ +.+++|++.++|+...+......
T Consensus 575 ~~~t~~sgfpvvl~~~-----------------------------------------sq~lvGfv~rr~l~~~i~~ar~~ 613 (696)
T KOG0475|consen 575 MEDTDFSGFPVVLSED-----------------------------------------SQRLVGFVLRRNLFLAILNARKI 613 (696)
T ss_pred HhhcccCCceEEEccc-----------------------------------------cceeEEEEchHHHHHHHhhhccc
Confidence 9999999999886652 36899999999998777643210
Q ss_pred cCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCcccc
Q psy15912 319 ENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVV 398 (482)
Q Consensus 319 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (482)
.. . +.+. ++ .|.++.+..
T Consensus 614 q~-~-----------------------------~~~~---------~~---------------~f~~~~~~~-------- 631 (696)
T KOG0475|consen 614 QS-F-----------------------------IVTT---------SI---------------YFNDPSPSA-------- 631 (696)
T ss_pred cc-c-----------------------------ceec---------cc---------------ccCCCCccc--------
Confidence 00 0 0000 00 010111100
Q ss_pred CccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 399 SENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 399 ~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
.+.....++++++|+..|++|...+|.+-+.++|++.|++++.|. ++|++.|+||+||+++..
T Consensus 632 -~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 632 -VAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT 694 (696)
T ss_pred -cCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence 111235579999999999999999999999999999999999886 699999999999999764
No 4
>KOG0476|consensus
Probab=100.00 E-value=1.3e-34 Score=304.02 Aligned_cols=203 Identities=30% Similarity=0.535 Sum_probs=184.5
Q ss_pred Cchh-HHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhccccccccCCCcccccccCCCCcceehHHHHHHHHHHHHH
Q psy15912 38 GAFG-VFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLF 116 (482)
Q Consensus 38 ~~~~-~~~l~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~gG~f~Psl~iGa~~G~~~ 116 (482)
|.++ +..|++|+++||++++++..+.+| .|+|+|.|+|||++||++
T Consensus 437 g~~~~f~tL~lf~l~~F~~siia~TipvP---------------------------------sG~FmPvFViGAafGRlv 483 (931)
T KOG0476|consen 437 GDVSIFGTLVLFFLMYFWMSIIATTIPVP---------------------------------SGVFMPVFVIGAAFGRLV 483 (931)
T ss_pred CceeeHHHHHHHHHHHHHHHHHHhccccC---------------------------------ccceeeeeeechhhhhhh
Confidence 3444 347899999999999999999999 999999999999999999
Q ss_pred HHHHHHhcCCC-------CCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcCCCh
Q psy15912 117 SLFLQSIFPEA-------TWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGL 189 (482)
Q Consensus 117 g~~~~~~~~~~-------~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~~si 189 (482)
|+.+..+||+. ..+.|+.||++|+|||.|++++ ++|.+||++|+||+..+++|+|+++++|+.|+..+..|+
T Consensus 484 GE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAfsGaVTH-TvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSi 562 (931)
T KOG0476|consen 484 GEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAFSGAVTH-TVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSI 562 (931)
T ss_pred hhhheeecccccccCCccCccccchhhhhhhhhhccceee-eeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcch
Confidence 99998888863 2478999999999998888876 999999999999999999999999999999999999999
Q ss_pred hHHHHHHcCCCCCCCCCCC--CccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccC
Q psy15912 190 YDIHIQLSGIPLLAWDPPP--LSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSS 267 (482)
Q Consensus 190 y~~~L~~~g~p~l~~~~~~--~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~ 267 (482)
||.+++.+++||++.-... ..+++.|.|+|.+++.++..+.+.+++.++|+.++.+.||+||+.+
T Consensus 563 YDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~e------------- 629 (931)
T KOG0476|consen 563 YDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKE------------- 629 (931)
T ss_pred hhheeeeccCCcCCCCCCcccceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcc-------------
Confidence 9999999999999976543 5678999999999999999999999999999998899999999863
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhh
Q psy15912 268 AGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHK 315 (482)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~ 315 (482)
+..|+|.|.|++|..+++++
T Consensus 630 ----------------------------smiLlGSV~R~~L~~ll~~~ 649 (931)
T KOG0476|consen 630 ----------------------------SMILLGSVARRYLTALLQRH 649 (931)
T ss_pred ----------------------------cceeeehhHHHHHHHHHHhh
Confidence 35799999999999988864
No 5
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.87 E-value=1.1e-21 Score=208.40 Aligned_cols=116 Identities=53% Similarity=0.912 Sum_probs=110.0
Q ss_pred ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhh
Q psy15912 89 RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFG 168 (482)
Q Consensus 89 ~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~ 168 (482)
|++|+|+|.+||+|+|+|++||++|+++|.+++.+++.. ..+|+.|+++||+|++++++|+|++++++++|+||+++++
T Consensus 347 t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~-~~~~~~~aliGmaa~lag~~raPlt~iviv~ElTg~~~~l 425 (466)
T cd03685 347 ACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFT-SIDPGLYALLGAAAFLGGVMRMTVSLTVILLELTNNLTYL 425 (466)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHcccc-CCCchHHHHHHHHHHHhHHhhhhHHHHHHhhhhcCChhhH
Confidence 999999999999999999999999999999999887643 3789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCChhHHHHHHcCCCCCCCC
Q psy15912 169 LPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWD 205 (482)
Q Consensus 169 ~Pl~ia~~ia~~v~~~~~~siy~~~L~~~g~p~l~~~ 205 (482)
+|+|+++++|+++++.+++++||.+++.+|+||+++.
T Consensus 426 ~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 426 PPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence 9999999999999999999999999999999999754
No 6
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.86 E-value=1.8e-21 Score=205.57 Aligned_cols=148 Identities=37% Similarity=0.786 Sum_probs=128.7
Q ss_pred ccCchHHHHHHhcCC-----------------CC-chhHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhccccccc
Q psy15912 22 LQVPEKSVRTMLHDP-----------------KG-AFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWK 83 (482)
Q Consensus 22 ~~~~~~~i~~l~~~~-----------------~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~~~~~ 83 (482)
.+++++.++.+|+.. .. ...++.+++++++|++++++++|.++|
T Consensus 266 ~~~g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~------------------ 327 (445)
T cd03684 266 RLDMTELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVP------------------ 327 (445)
T ss_pred ccchhhHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCC------------------
Confidence 457777888887531 01 124567788889999999999999999
Q ss_pred cCCCcccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhc---CCC----------CCCchhHHHHHHHHHHhhhhhch
Q psy15912 84 SNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIF---PEA----------TWIDPGKYALIGAAAQLGGVVRM 150 (482)
Q Consensus 84 ~~~~~~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~---~~~----------~~~~~~~~a~vG~aa~~~g~~~~ 150 (482)
||+|+|+|++||++|+++|.+++.+. |+. ...+|+.|+++||+|++++++|+
T Consensus 328 ---------------GG~f~P~l~iGA~~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra 392 (445)
T cd03684 328 ---------------AGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRM 392 (445)
T ss_pred ---------------cceeHHHHHHHHHHhHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhcc
Confidence 99999999999999999999998763 321 12678999999999999999999
Q ss_pred hHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcC-CChhHHHHHHcCCCCC
Q psy15912 151 TISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLSGIPLL 202 (482)
Q Consensus 151 p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~-~siy~~~L~~~g~p~l 202 (482)
|++++++++|+||++++++|+++++++|+++++.++ +++||.+++.||+||+
T Consensus 393 Plt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 393 TVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred chhhhheeeeccCCcccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999996 7999999999999985
No 7
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.86 E-value=2e-21 Score=203.57 Aligned_cols=134 Identities=25% Similarity=0.300 Sum_probs=120.6
Q ss_pred cccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q psy15912 63 SVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY 135 (482)
Q Consensus 63 ~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~ 135 (482)
.+.|+||+.++.+++++..+.. +.|+ |++|+|+|++||+|+|++++||++|.++|.+++.++|... ..+..|
T Consensus 276 ~~~G~G~~~i~~~~~~~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~-~~~~~~ 354 (418)
T PRK01610 276 AVWGNGYSVVQSFLTAPPLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPDGE-EITLLL 354 (418)
T ss_pred HHhCCcHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCcc-cchHHH
Confidence 4779999999999998866543 4666 9999999999999999999999999999999998877542 347899
Q ss_pred HHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhc-CCChhHHHHHHc
Q psy15912 136 ALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF-TEGLYDIHIQLS 197 (482)
Q Consensus 136 a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~-~~siy~~~L~~~ 197 (482)
+++||+|++++++|+|++++++++|+||++++++|+|+++++|+.+++.+ ++++|+.++.++
T Consensus 355 a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 355 GLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCchHHHHhcc
Confidence 99999999999999999999999999999999999999999999999987 589999998754
No 8
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.84 E-value=9.1e-21 Score=198.26 Aligned_cols=133 Identities=29% Similarity=0.418 Sum_probs=121.0
Q ss_pred ccccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q psy15912 62 VSVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK 134 (482)
Q Consensus 62 ~~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~ 134 (482)
-.+.|+||+.++..++++..|.. +.|+ |++|+|+|++||+|+|++++||++|+++|.+++.++|... .+|..
T Consensus 262 p~~~g~G~~~i~~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~-~~~~~ 340 (402)
T cd01031 262 PEALGGGHGLILSLAGGNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPIPI-SAPAT 340 (402)
T ss_pred HHHhCCHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccHHH
Confidence 44679999999999999876654 3555 9999999999999999999999999999999998887543 68999
Q ss_pred HHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhc-CCChhHHHHH
Q psy15912 135 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF-TEGLYDIHIQ 195 (482)
Q Consensus 135 ~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~-~~siy~~~L~ 195 (482)
|+++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.+ .+++||.+++
T Consensus 341 ~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l~ 402 (402)
T cd01031 341 FAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALLE 402 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHhC
Confidence 999999999999999999999999999999999999999999999999988 5899998764
No 9
>PRK05277 chloride channel protein; Provisional
Probab=99.83 E-value=2.5e-20 Score=196.96 Aligned_cols=135 Identities=24% Similarity=0.432 Sum_probs=123.3
Q ss_pred ccccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q psy15912 62 VSVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK 134 (482)
Q Consensus 62 ~~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~ 134 (482)
-.+.|+||+.++.+++++..+.. +.|+ |++|+|+|.+||+|+|++++||++|+++|.+++.++|... .+|..
T Consensus 275 p~~~g~G~~~i~~~~~~~~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~~~-~~~~~ 353 (438)
T PRK05277 275 PAAVGGGFNLIPIALAGNFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQYH-IEPGT 353 (438)
T ss_pred hhhcCChHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-ccHHH
Confidence 35789999999999999876542 3555 9999999999999999999999999999999999888643 68999
Q ss_pred HHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcC-CChhHHHHHHc
Q psy15912 135 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLS 197 (482)
Q Consensus 135 ~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~-~siy~~~L~~~ 197 (482)
|+++||+|++++++|+|++++++++|+||++++++|+++++++|+++++.++ +++|+.++++.
T Consensus 354 ~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 354 FAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGGKPIYSALLERT 417 (438)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 89999998876
No 10
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.83 E-value=2.1e-20 Score=196.57 Aligned_cols=119 Identities=34% Similarity=0.588 Sum_probs=108.2
Q ss_pred CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCC------CCCCchhHHHHHHHHHHhhhhhchhHHHHH
Q psy15912 85 NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPE------ATWIDPGKYALIGAAAQLGGVVRMTISLTI 156 (482)
Q Consensus 85 ~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~------~~~~~~~~~a~vG~aa~~~g~~~~p~s~~v 156 (482)
+.|+ |++|+|+|.+||+|+|+|++||++|+++|.+++.++|+ ....+|+.|+++||+|++++++|+|.++ +
T Consensus 300 ~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t~-v 378 (426)
T cd03683 300 VVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTHTVSVA-V 378 (426)
T ss_pred HHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHhHHHHH-h
Confidence 3555 99999999999999999999999999999999998872 2236799999999999999999997765 6
Q ss_pred HHHHhhCCchhhHHHHHHHHHHHHHhhhcCCChhHHHHHHcCCCCCCC
Q psy15912 157 ILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAW 204 (482)
Q Consensus 157 i~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~~siy~~~L~~~g~p~l~~ 204 (482)
+++|+||++++++|+|+++++|+++++.+++++||.+++.||+||+++
T Consensus 379 lv~E~Tg~~~~llpl~ia~~ia~~v~~~~~~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 379 IIFELTGQISHLLPVLIAVLISNAVAQFLQPSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred eeeeecCCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence 999999999999999999999999999999999999999999999873
No 11
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.83 E-value=4.6e-20 Score=194.51 Aligned_cols=141 Identities=29% Similarity=0.457 Sum_probs=127.3
Q ss_pred ccccCCCchhhhhhhccccccc-c----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q psy15912 62 VSVSGGGMPEKYDFLSKDNVWK-S----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK 134 (482)
Q Consensus 62 ~~~~g~G~~~~~~~l~~~~~~~-~----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~ 134 (482)
-.+.|+||+.++..++++..++ + +.|. |++|+|||++||+|.|++++|+++|.++|.++..++|.. ...+..
T Consensus 289 P~~lg~G~~~~~~~~~~~~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~~~-~~~~~~ 367 (443)
T COG0038 289 PEVLGNGYGLIQLALAGEGGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPPS-ILEPGL 367 (443)
T ss_pred hhhhCCCccHHHHHHccCccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcCcc-ccchHH
Confidence 3556999999999999999887 3 3555 999999999999999999999999999999999988764 257889
Q ss_pred HHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhc-CCChhHHHHHHcCCCCCC
Q psy15912 135 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF-TEGLYDIHIQLSGIPLLA 203 (482)
Q Consensus 135 ~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~-~~siy~~~L~~~g~p~l~ 203 (482)
|+++||++++++++|+|++++++++||||+++.++|+|++++++|.+++.. ++++|+..+++++.+..+
T Consensus 368 ~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
T COG0038 368 FALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRGAPILR 437 (443)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcCchhhh
Confidence 999999999999999999999999999999999999999999999999976 489999999999887433
No 12
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.79 E-value=3.8e-19 Score=186.58 Aligned_cols=107 Identities=45% Similarity=0.730 Sum_probs=97.5
Q ss_pred CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCC-------CCCchhHHHHHHHHHHhhhhhchhHHHH
Q psy15912 85 NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEA-------TWIDPGKYALIGAAAQLGGVVRMTISLT 155 (482)
Q Consensus 85 ~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~-------~~~~~~~~a~vG~aa~~~g~~~~p~s~~ 155 (482)
+.|. |++|+|+|.+||+|+|+|++||++|+++|.+++.++|.. ..++|+.|+++||+|++++++|+|++++
T Consensus 301 ~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~ 380 (416)
T cd01036 301 LIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFSIC 380 (416)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHhhh
Confidence 3444 888888888899999999999999999999999888732 1368999999999999999999999999
Q ss_pred HHHHHhhCCchhhHHHHHHHHHHHHHhhhcCCChhH
Q psy15912 156 IILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYD 191 (482)
Q Consensus 156 vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~~siy~ 191 (482)
++++|+||++++++|+|+++++|+++++.+++++||
T Consensus 381 vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~~siY~ 416 (416)
T cd01036 381 VIMMELTGDLHHLLPLMVAILIAKAVADAFCESLYH 416 (416)
T ss_pred hheeeccCChhhHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999999999999999999999899986
No 13
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.78 E-value=7.1e-19 Score=182.95 Aligned_cols=121 Identities=27% Similarity=0.374 Sum_probs=109.9
Q ss_pred cccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q psy15912 63 SVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY 135 (482)
Q Consensus 63 ~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~ 135 (482)
.+.|+||+.++.+++++..+.. +.|+ |++|+|+|++||+|+|++++||++|+.+|.+++.++|+ .++..|
T Consensus 259 ~~~G~G~~~i~~~~~~~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~---~~~~~~ 335 (388)
T cd01033 259 QILGNGRALAQLAFSTTLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPP---LSIAAF 335 (388)
T ss_pred HHhCCcHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCc---ccHHHH
Confidence 4689999999999999865432 3555 99999999999999999999999999999999887764 468899
Q ss_pred HHHHHHHHhhhhhchhHHHHHHHHHhhC-CchhhHHHHHHHHHHHHHhhhcC
Q psy15912 136 ALIGAAAQLGGVVRMTISLTIILIEATG-NISFGLPLMLTLITAKWIGDFFT 186 (482)
Q Consensus 136 a~vG~aa~~~g~~~~p~s~~vi~~Eltg-~~~~~~Pl~ia~~ia~~v~~~~~ 186 (482)
+++||+|++++++|+|++++++++|+|| ++++++|+|+++++|+.+++.+.
T Consensus 336 a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~~ 387 (388)
T cd01033 336 ALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFIL 387 (388)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999 99999999999999999998764
No 14
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.78 E-value=9.9e-19 Score=180.00 Aligned_cols=131 Identities=34% Similarity=0.595 Sum_probs=111.3
Q ss_pred HccCchHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhccccccccCCCcccccccCCCCcc
Q psy15912 21 WLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGG 100 (482)
Q Consensus 21 ~~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~gG 100 (482)
.++++++.++.+++++...+.++.+++++++|++++.++++.+++ ||
T Consensus 225 ~~g~G~~~i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~---------------------------------GG 271 (355)
T PF00654_consen 225 VLGSGYELIQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAP---------------------------------GG 271 (355)
T ss_dssp GSSSSTTHHHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-B---------------------------------SB
T ss_pred ccCCcHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCC---------------------------------CC
Confidence 567888999999986545688999999999999999999999999 99
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHH
Q psy15912 101 VFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKW 180 (482)
Q Consensus 101 ~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~ 180 (482)
+|.|++++|+++|++++.+++..+|+....+|..|+++||+|++++++|+|++++++++|+||++++++|+++++++|+.
T Consensus 272 ~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a~~ 351 (355)
T PF00654_consen 272 IFFPSLFIGAALGRLFGALLGSFFPGISSVDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGDFQLLLPLLIAVAVAYL 351 (355)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH--GGGHHHHHHHHHHHHH
T ss_pred EEccHHHHHHHHHHHHHHHHHhhCCCcCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999886432479999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q psy15912 181 IGDF 184 (482)
Q Consensus 181 v~~~ 184 (482)
++++
T Consensus 352 v~~~ 355 (355)
T PF00654_consen 352 VARW 355 (355)
T ss_dssp HHH-
T ss_pred HhCC
Confidence 9874
No 15
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.77 E-value=1.9e-17 Score=159.14 Aligned_cols=237 Identities=15% Similarity=0.193 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH-HHhhhhhchhHHHHHHHHHhhC------Cch-hhHHHHHHHH
Q psy15912 105 CLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAA-AQLGGVVRMTISLTIILIEATG------NIS-FGLPLMLTLI 176 (482)
Q Consensus 105 sl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~a-a~~~g~~~~p~s~~vi~~Eltg------~~~-~~~Pl~ia~~ 176 (482)
|+.-|.++.+++|....+|+.+. ....+...-.+++ .++..+.+-|-.++.+..-++| +|+ .+.|+.+.+.
T Consensus 83 siiGGNlvaAlvgvtva~~vgd~-~la~~lavsLaI~~M~~~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~Sl 161 (382)
T COG3448 83 SIIGGNLVAALVGVTVAYFVGDP-VLASGLAVSLAIGAMFALRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSL 161 (382)
T ss_pred hhhcchHHHHHHhhhhhhhhCCh-HHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhH
Confidence 55556666666666666665442 1222222223333 3445778888888888777775 444 4567666655
Q ss_pred HHHHHhhhcC---CChhHH-H-----------------------------HHHcCC--CCCCCC------------CCCC
Q psy15912 177 TAKWIGDFFT---EGLYDI-H-----------------------------IQLSGI--PLLAWD------------PPPL 209 (482)
Q Consensus 177 ia~~v~~~~~---~siy~~-~-----------------------------L~~~g~--p~l~~~------------~~~~ 209 (482)
+-...+-.|+ +.-|.+ + +++.|. +.-+++ -...
T Consensus 162 iLv~~a~lynnl~~r~YPh~~~~p~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~ 241 (382)
T COG3448 162 ILVGLALLYNNLTRRTYPHHWLSPPANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRRR 241 (382)
T ss_pred HHHHHHHHHHHHhcCCCCCccCCCcccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHH
Confidence 4333333332 222222 1 111110 000000 0011
Q ss_pred ccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912 210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD 289 (482)
Q Consensus 210 l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (482)
...++..|||+++|+++++++++.++.+.|++++.+.+||+|++
T Consensus 242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~------------------------------------ 285 (382)
T COG3448 242 MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH------------------------------------ 285 (382)
T ss_pred hccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccc------------------------------------
Confidence 45678899999999999999999999999999999999999987
Q ss_pred CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912 290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE 369 (482)
Q Consensus 290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~ 369 (482)
.+++|+|+++|+....... |
T Consensus 286 -------~rl~GiVt~~dl~~~a~~~--------p--------------------------------------------- 305 (382)
T COG3448 286 -------RRLVGIVTQRDLLKHARPS--------P--------------------------------------------- 305 (382)
T ss_pred -------cceeeeeeHHHHhhccCcc--------h---------------------------------------------
Confidence 4899999999986432110 0
Q ss_pred CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912 370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH 449 (482)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~ 449 (482)
|+. ++. ...-.++.+|++...+++++++..+..-.|.+.|++++||+|++|+
T Consensus 306 -------------~qr----------lr~-----~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~ 357 (382)
T COG3448 306 -------------FQR----------LRF-----LRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGK 357 (382)
T ss_pred -------------HHH----------hhc-----cCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCc
Confidence 000 000 0112689999999999999999999999999999999999999999
Q ss_pred EEEEEeHHHhHHHHHhh
Q psy15912 450 VVGMITRKDLARYRVWR 466 (482)
Q Consensus 450 lvGIITr~DLl~~~~~~ 466 (482)
++||||.+|++.+...+
T Consensus 358 lvGIvsQtDliaal~r~ 374 (382)
T COG3448 358 LVGIVSQTDLIAALYRN 374 (382)
T ss_pred EEEEeeHHHHHHHHHHH
Confidence 99999999999875544
No 16
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.77 E-value=1.6e-18 Score=180.62 Aligned_cols=125 Identities=29% Similarity=0.371 Sum_probs=109.6
Q ss_pred ccccccCCCchhhhhhhcccc--cccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q psy15912 60 YGVSVSGGGMPEKYDFLSKDN--VWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK 134 (482)
Q Consensus 60 ~~~~~~g~G~~~~~~~l~~~~--~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~ 134 (482)
++-...|+||+.++++++++. .|.. +.|+ |++|+|+|++||+|.|++++||++|++++.++. . .++..
T Consensus 260 ~~~~~~G~G~~~i~~~~~~~~~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~----~---~~~~~ 332 (390)
T cd01034 260 SGGLTFGTGYLQARAALEGGGGLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLG----S---VSQGA 332 (390)
T ss_pred CCCccccCcHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhc----C---CCchH
Confidence 344567999999999998764 2322 3555 999999999999999999999999999998653 2 47889
Q ss_pred HHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcC-CChhH
Q psy15912 135 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYD 191 (482)
Q Consensus 135 ~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~-~siy~ 191 (482)
|+++||+|++++++|+|++++++++|+|+++++++|+++++++|+++++.++ +++||
T Consensus 333 ~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 333 LVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999875 78885
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.71 E-value=4.1e-17 Score=169.35 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=103.3
Q ss_pred cccCCCchhhhh-hhcccccccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q psy15912 63 SVSGGGMPEKYD-FLSKDNVWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 138 (482)
Q Consensus 63 ~~~g~G~~~~~~-~l~~~~~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~v 138 (482)
...|.||+.++. .++++..+.. +.|+ |++|+|+|++||+|+|++++||++|++++.++. .++..++++
T Consensus 257 ~~~G~g~~~i~~~~~~~~~~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~--------~~~~~~~~~ 328 (378)
T cd03682 257 RYLGLGTPLIEDSFFGGTVYPYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG--------LPVSLLAAL 328 (378)
T ss_pred ccccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC--------CCHHHHHHH
Confidence 467999999998 6677765554 4666 999999999999999999999999999998752 357789999
Q ss_pred HHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcCCChhH
Q psy15912 139 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYD 191 (482)
Q Consensus 139 G~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~~siy~ 191 (482)
||+|++++++|+|++++++++|+|| .+.++|+++++++|+.+++ .+++|+
T Consensus 329 Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~~~iy~ 378 (378)
T cd03682 329 GFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--HTGIYG 378 (378)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence 9999999999999999999999999 5788999999999999986 467774
No 18
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.68 E-value=1.7e-16 Score=165.22 Aligned_cols=116 Identities=36% Similarity=0.530 Sum_probs=104.9
Q ss_pred cccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q psy15912 63 SVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY 135 (482)
Q Consensus 63 ~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~ 135 (482)
.+.|.||+.++..++++..+.. +.|. |++|+|+|.+||.|.|++++||++|++++.++..++|.. ..++..+
T Consensus 261 ~~~g~G~~~~~~~~~~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~~-~~~~~~~ 339 (383)
T cd00400 261 QVLGSGYGAILLALAGELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPGL-VASPGAY 339 (383)
T ss_pred HHHcCcHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCcc-cCChHHH
Confidence 4678999999999998866432 3555 999999999999999999999999999999999888754 3689999
Q ss_pred HHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHH
Q psy15912 136 ALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAK 179 (482)
Q Consensus 136 a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~ 179 (482)
+++||+|++++++|+|++++++++|+||++++++|+++++++||
T Consensus 340 ~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 340 ALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999998875
No 19
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.67 E-value=5.3e-16 Score=146.83 Aligned_cols=122 Identities=20% Similarity=0.368 Sum_probs=112.0
Q ss_pred ccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912 210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD 289 (482)
Q Consensus 210 l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (482)
+...+++++|++++.++++++++.++...|-+..+++.||+|++
T Consensus 169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d------------------------------------ 212 (294)
T COG2524 169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD------------------------------------ 212 (294)
T ss_pred cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC------------------------------------
Confidence 55778999999999999999999999999999999999999975
Q ss_pred CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912 290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE 369 (482)
Q Consensus 290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~ 369 (482)
+++|+++.+|+..++.+..
T Consensus 213 --------k~vGiit~~dI~~aia~g~----------------------------------------------------- 231 (294)
T COG2524 213 --------KIVGIITLSDIAKAIANGN----------------------------------------------------- 231 (294)
T ss_pred --------ceEEEEEHHHHHHHHHcCC-----------------------------------------------------
Confidence 8999999999998876541
Q ss_pred CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912 370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH 449 (482)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~ 449 (482)
...+|++||.++++++.+|+.+.+|.++|...+.++|.|+|.+|+
T Consensus 232 -----------------------------------~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gk 276 (294)
T COG2524 232 -----------------------------------LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGK 276 (294)
T ss_pred -----------------------------------ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCc
Confidence 112799999999999999999999999999999999999999999
Q ss_pred EEEEEeHHHhHHHH
Q psy15912 450 VVGMITRKDLARYR 463 (482)
Q Consensus 450 lvGIITr~DLl~~~ 463 (482)
.+|||||+|+++..
T Consensus 277 pvGiITrTDIL~~i 290 (294)
T COG2524 277 PVGIITRTDILTRI 290 (294)
T ss_pred EEEEEehHHHHHHh
Confidence 99999999999854
No 20
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.63 E-value=3.3e-15 Score=151.74 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=125.3
Q ss_pred CChhHHHHHHcCCCC---CCCCCCCCcc---ccchhhcccCC--eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCC
Q psy15912 187 EGLYDIHIQLSGIPL---LAWDPPPLSS---NITARIVKSHP--VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH 258 (482)
Q Consensus 187 ~siy~~~L~~~g~p~---l~~~~~~~l~---~l~a~dvM~~~--~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~ 258 (482)
.++|...+.++|... ...++...+. .++|+|+|.++ +.++++++++.++.+.|..++...+||+|++
T Consensus 165 dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~----- 239 (321)
T PRK11543 165 DALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ----- 239 (321)
T ss_pred HHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC-----
Confidence 577888888888766 6666667788 89999999998 9999999999999999988888999999975
Q ss_pred CCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccc
Q psy15912 259 SSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYR 338 (482)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 338 (482)
|+++|+|+..|+.+.+....
T Consensus 240 --------------------------------------g~~iG~vt~~dl~~~~~~~~---------------------- 259 (321)
T PRK11543 240 --------------------------------------QQVQGVFTDGDLRRWLVGGG---------------------- 259 (321)
T ss_pred --------------------------------------CcEEEEecHHHHHHHHhCCC----------------------
Confidence 69999999999876543210
Q ss_pred cccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCce
Q psy15912 339 CRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPF 418 (482)
Q Consensus 339 ~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~ 418 (482)
....++.++|++++.
T Consensus 260 -----------------------------------------------------------------~~~~~v~~im~~~~~ 274 (321)
T PRK11543 260 -----------------------------------------------------------------ALTTPVNEAMTRGGT 274 (321)
T ss_pred -----------------------------------------------------------------CcCCcHHHhcCCCCE
Confidence 001157899999999
Q ss_pred eeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 419 ~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
++.+++++.++++.|.+.+.+++||||++|+++|+||++|++++
T Consensus 275 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 275 TLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 99999999999999999999999999988999999999999975
No 21
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.63 E-value=3.8e-15 Score=151.65 Aligned_cols=147 Identities=12% Similarity=0.147 Sum_probs=121.6
Q ss_pred CChhHHHHHHcCCCC---CCCCCCCCc---cccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCC
Q psy15912 187 EGLYDIHIQLSGIPL---LAWDPPPLS---SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH 258 (482)
Q Consensus 187 ~siy~~~L~~~g~p~---l~~~~~~~l---~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~ 258 (482)
.++|...+.++|... ...+....+ ..++|+|+|.+ ++.++++++++.++++.|.+++++.+||+|++
T Consensus 170 dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~----- 244 (326)
T PRK10892 170 DALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN----- 244 (326)
T ss_pred HHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC-----
Confidence 567777888888766 555555566 88999999997 89999999999999999988887777778765
Q ss_pred CCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccc
Q psy15912 259 SSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYR 338 (482)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 338 (482)
|+++|+|+..|+.+.+....
T Consensus 245 --------------------------------------g~lvGivt~~Dl~~~~~~~~---------------------- 264 (326)
T PRK10892 245 --------------------------------------MKIEGIFTDGDLRRVFDMGI---------------------- 264 (326)
T ss_pred --------------------------------------CcEEEEEecHHHHHHHhcCC----------------------
Confidence 69999999999876432210
Q ss_pred cccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCce
Q psy15912 339 CRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPF 418 (482)
Q Consensus 339 ~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~ 418 (482)
. ....+++++|++++.
T Consensus 265 ---------------------------------~-------------------------------~~~~~v~~im~~~~~ 280 (326)
T PRK10892 265 ---------------------------------D-------------------------------LRQASIADVMTPGGI 280 (326)
T ss_pred ---------------------------------C-------------------------------cccCCHHHhcCCCCE
Confidence 0 011268899999999
Q ss_pred eeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 419 ~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
++++++++.++++.|.+.+.+++||+| +|+++|+||++|++++.
T Consensus 281 ~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~~ 324 (326)
T PRK10892 281 RVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRAG 324 (326)
T ss_pred EECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhcc
Confidence 999999999999999999999999997 68999999999999764
No 22
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.59 E-value=2.3e-15 Score=148.07 Aligned_cols=209 Identities=22% Similarity=0.355 Sum_probs=160.4
Q ss_pred CCCCcce--ehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH-------------HHHHhhhhhchhHHHHHHHH
Q psy15912 95 LSDSGGV--FIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIG-------------AAAQLGGVVRMTISLTIILI 159 (482)
Q Consensus 95 ~G~~gG~--f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG-------------~aa~~~g~~~~p~s~~vi~~ 159 (482)
.||..|+ ..--|+|||+---.+..- +.|+.+.++| +|.+..|-.. .-==+.
T Consensus 85 LgG~~Gl~k~~sKFvIGAMt~~~i~rY----------~~~g~LlIVGnR~~iq~lAL~~~~AVLvTGGF~----~s~evi 150 (432)
T COG4109 85 LGGRAGLEKELSKFVIGAMTLDAILRY----------LDPGGLLIVGNREDIQLLALENGNAVLVTGGFD----VSDEVI 150 (432)
T ss_pred eccccchhhhhhhhhhhhhhHHHHHhh----------cCCCceEEEecHHHHHHHHHhcCCeEEEeCCCC----ccHHHH
Confidence 3555666 345789999875544432 2333333333 3333333332 111245
Q ss_pred HhhCCchhhHHHHHHHHHHHHHhhhcCCChhHHHHHHcCCCCCCCCCCCCccccchhhccc--CCeeEecCCCCHHHHHH
Q psy15912 160 EATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKS--HPVICLRPLETVGNIID 237 (482)
Q Consensus 160 Eltg~~~~~~Pl~ia~~ia~~v~~~~~~siy~~~L~~~g~p~l~~~~~~~l~~l~a~dvM~--~~~~~l~~~~~i~~~~~ 237 (482)
++... .-+|++-...-.+.++...++.+|+.+++.. -++|.|+|. .+..++++.+++.+..+
T Consensus 151 ~lAne--~~lPvlstsYDTFTVAtmIN~Al~n~lIKkd--------------I~~Vedi~~P~~~~~yL~~~d~v~d~~~ 214 (432)
T COG4109 151 KLANE--KGLPVLSTSYDTFTVATMINKALSNQLIKKD--------------IITVEDIMTPLEDTSYLRETDTVEDWLD 214 (432)
T ss_pred Hhhcc--cCCceEEecccceeHHHHHHHHHHHhhhhhh--------------eeeHHHhccccccceeccccccHHHHHH
Confidence 66664 3469999888888899988999999877643 368999999 58899999999999999
Q ss_pred HHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhh
Q psy15912 238 VLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIY 317 (482)
Q Consensus 238 ~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~ 317 (482)
+-.+++|+.|||+|+. .+++|+++-+|+....
T Consensus 215 l~~kt~~sRfPVvn~~-------------------------------------------~kvvGvVt~rDv~~~~----- 246 (432)
T COG4109 215 LVEKTGHSRFPVVNRS-------------------------------------------MKVVGVVTMRDVLDKK----- 246 (432)
T ss_pred HHHHcCCCccceeccc-------------------------------------------ceEEEEEEehhhhcCC-----
Confidence 9999999999999986 6999999999864210
Q ss_pred ccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccc
Q psy15912 318 KENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLV 397 (482)
Q Consensus 318 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (482)
T Consensus 247 -------------------------------------------------------------------------------- 246 (432)
T COG4109 247 -------------------------------------------------------------------------------- 246 (432)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhhcc
Q psy15912 398 VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHG 468 (482)
Q Consensus 398 ~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~~~ 468 (482)
++.++..+|+++|+++.+.+++..+.+.|.--++.-+||+|++++++|||||+|+++....-.+
T Consensus 247 -------~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~ 310 (432)
T COG4109 247 -------PSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQR 310 (432)
T ss_pred -------CCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhcc
Confidence 1237889999999999999999999999999999999999999999999999999998654433
No 23
>PRK03655 putative ion channel protein; Provisional
Probab=99.52 E-value=4.3e-14 Score=147.89 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=95.7
Q ss_pred HHhccccccCCCchhhhhhhcc-cccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy15912 57 VWTYGVSVSGGGMPEKYDFLSK-DNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEAT 128 (482)
Q Consensus 57 ~~~~~~~~~g~G~~~~~~~l~~-~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~ 128 (482)
.+.++-.+.|.||+.++..+.+ +..+.. +.|+ |++|++||.+||+|.|+|++||++|..++.+ +|.
T Consensus 272 ~l~~~~~~~g~Gy~~i~~~~~~~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l----~p~-- 345 (414)
T PRK03655 272 GVIGGPLTLFKGLDEMQQMAANQAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH----VPA-- 345 (414)
T ss_pred HHHhCCccccCCHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh----ccC--
Confidence 3444445699999999988865 555543 3666 9999999999999999999999999888865 443
Q ss_pred CCchhHHHHHHHHHHhhhhhc----hhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhh
Q psy15912 129 WIDPGKYALIGAAAQLGGVVR----MTISLTIILIEATGNISFGLPLMLTLITAKWIGD 183 (482)
Q Consensus 129 ~~~~~~~a~vG~aa~~~g~~~----~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~ 183 (482)
.++....++||++++++++| +|+++++++.||| ++|+|++++++-|+.-
T Consensus 346 -~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~~ 398 (414)
T PRK03655 346 -VPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLLL 398 (414)
T ss_pred -CChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHHH
Confidence 46777889999999999999 6999999999999 8999999988777654
No 24
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.52 E-value=1.3e-13 Score=121.75 Aligned_cols=122 Identities=20% Similarity=0.440 Sum_probs=104.8
Q ss_pred cccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy15912 211 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA 290 (482)
Q Consensus 211 ~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (482)
..++++++|++|++.++|++++.+++++|++++++.+||++++
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~------------------------------------- 105 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEED------------------------------------- 105 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCC-------------------------------------
Confidence 4789999999999999999999999999999999999999874
Q ss_pred CCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccC
Q psy15912 291 SRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKEN 370 (482)
Q Consensus 291 ~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~ 370 (482)
+++|.|+..++.+++....
T Consensus 106 -------k~VGsItE~~iv~~~le~~------------------------------------------------------ 124 (187)
T COG3620 106 -------KVVGSITENDIVRALLEGM------------------------------------------------------ 124 (187)
T ss_pred -------eeeeeecHHHHHHHHhccc------------------------------------------------------
Confidence 9999999999988764430
Q ss_pred CCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912 371 QNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV 450 (482)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l 450 (482)
+...+..++++|..+.++|+++.++..+++++..+. .+.|+ ++|++
T Consensus 125 -------------------------------e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~ 170 (187)
T COG3620 125 -------------------------------ESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKV 170 (187)
T ss_pred -------------------------------cchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCce
Confidence 001234799999999999999999999999987654 57777 68999
Q ss_pred EEEEeHHHhHHHHH
Q psy15912 451 VGMITRKDLARYRV 464 (482)
Q Consensus 451 vGIITr~DLl~~~~ 464 (482)
+||||+.|+++...
T Consensus 171 vGIITk~DI~k~~~ 184 (187)
T COG3620 171 VGIITKADIMKLLA 184 (187)
T ss_pred EEEEeHHHHHHHHh
Confidence 99999999998653
No 25
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.50 E-value=6.3e-14 Score=148.61 Aligned_cols=124 Identities=23% Similarity=0.360 Sum_probs=109.5
Q ss_pred CCccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912 208 PLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK 287 (482)
Q Consensus 208 ~~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
..+..++++++|.++++++.+++++.++.+.|.++++..+||+|++
T Consensus 84 ~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~---------------------------------- 129 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE---------------------------------- 129 (479)
T ss_pred HHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCC----------------------------------
Confidence 3567888999999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912 288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY 367 (482)
Q Consensus 288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~ 367 (482)
++++|+|+.+|+... .
T Consensus 130 ---------gklvGIVT~rDL~~~---~---------------------------------------------------- 145 (479)
T PRK07807 130 ---------GRPVGVVTEADCAGV---D---------------------------------------------------- 145 (479)
T ss_pred ---------CeEEEEEeHHHHhcC---c----------------------------------------------------
Confidence 699999999997311 0
Q ss_pred ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912 368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN 447 (482)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~ 447 (482)
...+++++|+++++++++++++.+|+++|.+.+.+++||||++
T Consensus 146 -------------------------------------~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~ 188 (479)
T PRK07807 146 -------------------------------------RFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDAD 188 (479)
T ss_pred -------------------------------------cCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCC
Confidence 0015889999999999999999999999999999999999988
Q ss_pred CeEEEEEeHHHhHHHHHhh
Q psy15912 448 NHVVGMITRKDLARYRVWR 466 (482)
Q Consensus 448 g~lvGIITr~DLl~~~~~~ 466 (482)
|+++|+||++|+++...+.
T Consensus 189 g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 189 GRLVGVLTRTGALRATIYT 207 (479)
T ss_pred CeEEEEEEHHHHHHHhhCC
Confidence 9999999999999976554
No 26
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=3.6e-13 Score=116.02 Aligned_cols=120 Identities=23% Similarity=0.364 Sum_probs=93.8
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912 221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV 300 (482)
Q Consensus 221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv 300 (482)
+++.++.+++++.++++.|.+++.+.+||+|++ ++++
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-------------------------------------------~~~~ 37 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDEN-------------------------------------------GKVV 37 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-------------------------------------------CeEE
Confidence 357889999999999999999999999999875 6899
Q ss_pred EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912 301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS 380 (482)
Q Consensus 301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|+++.+|+..+........ +. ..
T Consensus 38 Giv~~~dl~~~~~~~~~~~----~~----------------------------------------------------~~- 60 (120)
T cd04641 38 DVYSRFDVINLAKEGAYNN----LD----------------------------------------------------LT- 60 (120)
T ss_pred EEEeHHHHHHHHhcCcccc----cc----------------------------------------------------CC-
Confidence 9999999986543220000 00 00
Q ss_pred hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912 381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460 (482)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl 460 (482)
....+...+.|..+++++++++++.++++.|.+.+.+++||+|++|+++|+||++|++
T Consensus 61 ----------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~ 118 (120)
T cd04641 61 ----------------------VGEALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL 118 (120)
T ss_pred ----------------------HHHHHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence 0000123345667788999999999999999999999999999889999999999998
Q ss_pred HH
Q psy15912 461 RY 462 (482)
Q Consensus 461 ~~ 462 (482)
++
T Consensus 119 ~~ 120 (120)
T cd04641 119 QF 120 (120)
T ss_pred cC
Confidence 64
No 27
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=4.4e-13 Score=114.54 Aligned_cols=111 Identities=16% Similarity=0.284 Sum_probs=94.6
Q ss_pred eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEE
Q psy15912 223 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGL 302 (482)
Q Consensus 223 ~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGi 302 (482)
+.+++++.++.++.+.|.+.++..+||+|++ ++++|+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-------------------------------------------g~~~G~ 39 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH-------------------------------------------GKLAGV 39 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCC-------------------------------------------CCEEEE
Confidence 5688999999999999999999999999876 689999
Q ss_pred EeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhh
Q psy15912 303 ILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEI 382 (482)
Q Consensus 303 Is~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 382 (482)
++.+|+.+.......
T Consensus 40 vt~~dl~~~~~~~~~----------------------------------------------------------------- 54 (114)
T cd04619 40 LTKTDVVRQMGRCGG----------------------------------------------------------------- 54 (114)
T ss_pred EehHHHHHHHhhcCC-----------------------------------------------------------------
Confidence 999998765432100
Q ss_pred hhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 383 FHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
.....+++++|.+++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 55 --------------------~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 55 --------------------PGCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred --------------------CcccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 00112678889999999999999999999999999999999998899999999999975
No 28
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=4.5e-13 Score=114.06 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=50.6
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++.++|...+.++++++++.+++++|.+.+.+++||+|++|+++|+||++|+++
T Consensus 57 ~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 57 KVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 577889888999999999999999999999999999998899999999999985
No 29
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.46 E-value=1.6e-11 Score=128.60 Aligned_cols=123 Identities=15% Similarity=0.259 Sum_probs=106.3
Q ss_pred ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912 210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK 287 (482)
Q Consensus 210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
+...+|+|+|++ ++++++.+++++++.+.+.+++|+.+||++++
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~---------------------------------- 233 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET---------------------------------- 233 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC----------------------------------
Confidence 668899999997 89999999999999999999999999999875
Q ss_pred CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912 288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY 367 (482)
Q Consensus 288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~ 367 (482)
.++++|+++.+|++..+...
T Consensus 234 --------~d~ivGiv~~kDll~~~~~~---------------------------------------------------- 253 (408)
T TIGR03520 234 --------IDNITGVLYIKDLLPHLNKK---------------------------------------------------- 253 (408)
T ss_pred --------CCceEEEEEHHHHHhHhccC----------------------------------------------------
Confidence 25899999999986432110
Q ss_pred ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912 368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN 447 (482)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~ 447 (482)
..+++++|. +|++|++++++.++++.|++.+.+..+|+|+.
T Consensus 254 --------------------------------------~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~ 294 (408)
T TIGR03520 254 --------------------------------------NFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY 294 (408)
T ss_pred --------------------------------------CCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC
Confidence 014667775 57899999999999999999999999999999
Q ss_pred CeEEEEEeHHHhHHHHHh
Q psy15912 448 NHVVGMITRKDLARYRVW 465 (482)
Q Consensus 448 g~lvGIITr~DLl~~~~~ 465 (482)
|.++||||.+|+++...-
T Consensus 295 G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 295 GGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred CCEEEEEEHHHHHHHHhC
Confidence 999999999999998653
No 30
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=6.5e-13 Score=111.15 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=42.7
Q ss_pred ceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHH
Q psy15912 417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLAR 461 (482)
Q Consensus 417 p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~ 461 (482)
+.++++++++.++.++|.+.+.+++||+|++ |+++|+||++|++.
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 7789999999999999999999999999987 89999999999975
No 31
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1.1e-12 Score=113.16 Aligned_cols=122 Identities=21% Similarity=0.360 Sum_probs=97.3
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912 221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV 300 (482)
Q Consensus 221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv 300 (482)
+++.++.+++++.++.+.|.+.+++.+||+|++ ++++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~ 38 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-------------------------------------------RRLV 38 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-------------------------------------------CCEE
Confidence 567889999999999999999899999999875 6899
Q ss_pred EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912 301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS 380 (482)
Q Consensus 301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|+++.+++...+....... ..
T Consensus 39 Giv~~~~l~~~~~~~~~~~-----------------------------------------------------------~~ 59 (124)
T cd04600 39 GIVTQRDLLRHARPDGRRP-----------------------------------------------------------LR 59 (124)
T ss_pred EEEEHHHHHhhhcccccch-----------------------------------------------------------hh
Confidence 9999999976543210000 00
Q ss_pred hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912 381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460 (482)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl 460 (482)
..+ + ......++.++|++.++++++++++.++++.|.+.+.+.+||+|++|+++|+||++|++
T Consensus 60 ~~~-~----------------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~ 122 (124)
T cd04600 60 GRL-R----------------GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI 122 (124)
T ss_pred hhh-h----------------cccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence 000 0 00122368899999999999999999999999999999999999899999999999998
Q ss_pred H
Q psy15912 461 R 461 (482)
Q Consensus 461 ~ 461 (482)
+
T Consensus 123 ~ 123 (124)
T cd04600 123 A 123 (124)
T ss_pred c
Confidence 5
No 32
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=9.4e-13 Score=111.16 Aligned_cols=106 Identities=25% Similarity=0.423 Sum_probs=92.7
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912 221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV 300 (482)
Q Consensus 221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv 300 (482)
.++.++.++++++++.+.+.+++++.+||+|++ ++++
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~ 38 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-------------------------------------------NKVV 38 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-------------------------------------------CeEE
Confidence 367889999999999999999888999999875 6999
Q ss_pred EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912 301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS 380 (482)
Q Consensus 301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|+++..++.... .
T Consensus 39 G~v~~~~l~~~~--~----------------------------------------------------------------- 51 (108)
T cd04596 39 GIVTSKDVAGKD--P----------------------------------------------------------------- 51 (108)
T ss_pred EEecHHHHhccc--c-----------------------------------------------------------------
Confidence 999999985210 0
Q ss_pred hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912 381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460 (482)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl 460 (482)
..+++++|.+.+.++++++++.++.+.|.+.+.+.+||+|++|+++|+||++|++
T Consensus 52 -------------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~ 106 (108)
T cd04596 52 -------------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL 106 (108)
T ss_pred -------------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 0157788988899999999999999999999999999999899999999999997
Q ss_pred H
Q psy15912 461 R 461 (482)
Q Consensus 461 ~ 461 (482)
+
T Consensus 107 ~ 107 (108)
T cd04596 107 K 107 (108)
T ss_pred c
Confidence 5
No 33
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.43 E-value=7.3e-13 Score=115.53 Aligned_cols=113 Identities=16% Similarity=0.301 Sum_probs=94.4
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912 221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV 300 (482)
Q Consensus 221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv 300 (482)
+++.++++++++.++++.|+++++..+||+|++ ++++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-------------------------------------------~~~~ 38 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-------------------------------------------GKIL 38 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------------------------------------CCEE
Confidence 467889999999999999999999999999875 5899
Q ss_pred EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912 301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS 380 (482)
Q Consensus 301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|+++.+++...+....
T Consensus 39 Gii~~~dl~~~~~~~~---------------------------------------------------------------- 54 (124)
T cd04608 39 GMVTLGNLLSSLSSGK---------------------------------------------------------------- 54 (124)
T ss_pred EEEEHHHHHHHHHHhc----------------------------------------------------------------
Confidence 9999999876553320
Q ss_pred hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHH---------HcCCCEEEEECCCCeEE
Q psy15912 381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFR---------ALGLRHVVVVNNNNHVV 451 (482)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~---------~~~lr~lpVVD~~g~lv 451 (482)
.....+++++|++++.++.+++++.++.+++. +.+.+++||+|++|+++
T Consensus 55 ----------------------~~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 112 (124)
T cd04608 55 ----------------------VQPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPI 112 (124)
T ss_pred ----------------------cCCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceE
Confidence 00123799999999999999999999999653 23678999999889999
Q ss_pred EEEeHHHhHHH
Q psy15912 452 GMITRKDLARY 462 (482)
Q Consensus 452 GIITr~DLl~~ 462 (482)
||||+.|++++
T Consensus 113 Givt~~Dl~~~ 123 (124)
T cd04608 113 GIVTKIDLLSY 123 (124)
T ss_pred EEEehhHhhhh
Confidence 99999999975
No 34
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=2e-12 Score=111.17 Aligned_cols=111 Identities=21% Similarity=0.258 Sum_probs=92.9
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++++++++.++++.|...+.+.+||+|++ ++++|
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G 38 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-------------------------------------------GDLVG 38 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------------------------------------CCEEE
Confidence 56889999999999999988888999999975 68999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++..|+.+......
T Consensus 39 ivt~~dl~~~~~~~~----------------------------------------------------------------- 53 (118)
T cd04617 39 VVSRKDLLKASIGGA----------------------------------------------------------------- 53 (118)
T ss_pred EEEHHHHHHHHHcCC-----------------------------------------------------------------
Confidence 999999877543210
Q ss_pred hhhhhCCCCCCCCccccCcccccccccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC---CeEEEEEeH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN---NHVVGMITR 456 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~---g~lvGIITr 456 (482)
.....+++++|.+ .+.++++++++.+++++|.+.+.+++||+|++ |+++|+||+
T Consensus 54 ---------------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~ 112 (118)
T cd04617 54 ---------------------DLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITK 112 (118)
T ss_pred ---------------------CccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEh
Confidence 0001256778875 67899999999999999999999999999877 699999999
Q ss_pred HHhHH
Q psy15912 457 KDLAR 461 (482)
Q Consensus 457 ~DLl~ 461 (482)
+|+++
T Consensus 113 ~~l~~ 117 (118)
T cd04617 113 TNITK 117 (118)
T ss_pred hheec
Confidence 99975
No 35
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2e-12 Score=109.28 Aligned_cols=110 Identities=29% Similarity=0.430 Sum_probs=93.8
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.+++++.++.++.+.+.+.+++.+||+|++ ++++|
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G 38 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-------------------------------------------GHLVG 38 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-------------------------------------------CcEEE
Confidence 46778999999999999988888999999875 68999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++..++.+.+....
T Consensus 39 ~v~~~~l~~~~~~~~----------------------------------------------------------------- 53 (111)
T cd04639 39 LLTRDDLIRALAEGG----------------------------------------------------------------- 53 (111)
T ss_pred EeeHHHHHHHHHhcC-----------------------------------------------------------------
Confidence 999999876543210
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
...++.++|...+.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+.+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 54 -----------------------PDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred -----------------------CCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 001577888888999999999999999999999999999998799999999999986
Q ss_pred H
Q psy15912 462 Y 462 (482)
Q Consensus 462 ~ 462 (482)
+
T Consensus 111 ~ 111 (111)
T cd04639 111 L 111 (111)
T ss_pred C
Confidence 3
No 36
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.42 E-value=2.2e-12 Score=109.17 Aligned_cols=111 Identities=24% Similarity=0.412 Sum_probs=95.3
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++.+++++.++++.|++.++..+||+|++ ++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~G 38 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-------------------------------------------GRLVG 38 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-------------------------------------------CCEEE
Confidence 56789999999999999999999999999875 68999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++..|+...+.+..
T Consensus 39 ~v~~~~l~~~~~~~~----------------------------------------------------------------- 53 (114)
T cd04613 39 IVSLDDIREILFDPS----------------------------------------------------------------- 53 (114)
T ss_pred EEEHHHHHHHHhccc-----------------------------------------------------------------
Confidence 999999976543210
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHhH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN-NNHVVGMITRKDLA 460 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~-~g~lvGIITr~DLl 460 (482)
.....++.++|++++.++++++++.++++.|.+.+.+++||+|+ +++++|++|++|++
T Consensus 54 ---------------------~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~ 112 (114)
T cd04613 54 ---------------------LYDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLL 112 (114)
T ss_pred ---------------------ccccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence 00113688899999999999999999999999999999999987 79999999999998
Q ss_pred H
Q psy15912 461 R 461 (482)
Q Consensus 461 ~ 461 (482)
.
T Consensus 113 ~ 113 (114)
T cd04613 113 S 113 (114)
T ss_pred c
Confidence 5
No 37
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.41 E-value=5.6e-13 Score=145.01 Aligned_cols=202 Identities=17% Similarity=0.217 Sum_probs=121.9
Q ss_pred cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912 213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR 292 (482)
Q Consensus 213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (482)
.+++|+|.+++.++++++++.++++.|++++++.+||+|++
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------------------------------------- 108 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE--------------------------------------- 108 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------------------------
Confidence 68999999999999999999999999999999999999975
Q ss_pred CCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccc-------hhhhhhhccc-------c---------ccccCCCCcc
Q psy15912 293 KESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQL-------SSEIFHAEYR-------C---------RPRIWSPGRL 349 (482)
Q Consensus 293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~-------~~~~~~~~~~-------~---------~~~~~~~~~~ 349 (482)
++++|+|+.+|+.+.+......+....-...+ .++....... . ......++.+
T Consensus 109 ----g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~l 184 (546)
T PRK14869 109 ----GKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDI 184 (546)
T ss_pred ----CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCE
Confidence 69999999999998766532110000000000 0000000000 0 0000011111
Q ss_pred ccchhhHHHHHH-HHhh----hhccCCCCCCC------CCChhhhhhhCCCCCCCCccccCccccccccccccccc-cCc
Q psy15912 350 VGLILRSQLIIL-IKHK----IYKENQNWPDD------QLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMN-TSP 417 (482)
Q Consensus 350 ~G~i~~~~l~~~-~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~-~~p 417 (482)
+=.-.|.++... ++.. ++..+....+. +.+...+..+++.+... .......+++++|+ +++
T Consensus 185 vi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~-------~~l~~~~~V~~iM~~~~~ 257 (546)
T PRK14869 185 VIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTA-------RLINQSIPVSYIMTTEDL 257 (546)
T ss_pred EEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHH-------HHhhcCCCHHHhccCCCc
Confidence 111223332221 1111 11111100000 00001111111111111 11344568999999 899
Q ss_pred eeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 418 FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 418 ~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
+++++++++.++.+.|.+.+.+++||||++|+++|+||++|++++..
T Consensus 258 ~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 258 VTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR 304 (546)
T ss_pred EEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence 99999999999999999999999999999999999999999998654
No 38
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=1.6e-12 Score=114.42 Aligned_cols=53 Identities=30% Similarity=0.478 Sum_probs=50.4
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++.++|.++++++.+++++.++.+.|.+.+.+++||+| +|+++|+||++|+++
T Consensus 82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 68899999999999999999999999999999999998 899999999999985
No 39
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.41 E-value=4.4e-12 Score=106.61 Aligned_cols=107 Identities=26% Similarity=0.400 Sum_probs=92.6
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912 221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV 300 (482)
Q Consensus 221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv 300 (482)
+++.+++++.++.++.+.|.+.++..+||+|++ ++++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~ 38 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-------------------------------------------NKLL 38 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-------------------------------------------CcEE
Confidence 356778999999999999998889999999875 6899
Q ss_pred EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912 301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS 380 (482)
Q Consensus 301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|+++..|+.......
T Consensus 39 G~v~~~dl~~~~~~~----------------------------------------------------------------- 53 (109)
T cd04583 39 GIVSLESLEQAYKEA----------------------------------------------------------------- 53 (109)
T ss_pred EEEEHHHHHHHhhcC-----------------------------------------------------------------
Confidence 999999986532110
Q ss_pred hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912 381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460 (482)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl 460 (482)
.++.++|.+.+.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|++
T Consensus 54 --------------------------~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~ 107 (109)
T cd04583 54 --------------------------KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV 107 (109)
T ss_pred --------------------------CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence 156778888899999999999999999999999999999889999999999997
Q ss_pred H
Q psy15912 461 R 461 (482)
Q Consensus 461 ~ 461 (482)
+
T Consensus 108 ~ 108 (109)
T cd04583 108 D 108 (109)
T ss_pred c
Confidence 4
No 40
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.40 E-value=2e-12 Score=129.47 Aligned_cols=125 Identities=18% Similarity=0.376 Sum_probs=105.5
Q ss_pred ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912 210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK 287 (482)
Q Consensus 210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
+...+|+|+|++ ++.+++++.+++++.+.+.+++|+.|||++++
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~---------------------------------- 109 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED---------------------------------- 109 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC----------------------------------
Confidence 456799999998 79999999999999999999999999999864
Q ss_pred CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912 288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY 367 (482)
Q Consensus 288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~ 367 (482)
.++++|+++.+|++.......
T Consensus 110 --------~d~iiGiv~~kDll~~~~~~~--------------------------------------------------- 130 (292)
T PRK15094 110 --------KDHIEGILMAKDLLPFMRSDA--------------------------------------------------- 130 (292)
T ss_pred --------CCcEEEEEEHHHHHhHhhccC---------------------------------------------------
Confidence 258999999999975432110
Q ss_pred ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912 368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN 447 (482)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~ 447 (482)
...++.++|.+ ++++++++++.++++.|++.+.+.+||+|+.
T Consensus 131 -------------------------------------~~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~ 172 (292)
T PRK15094 131 -------------------------------------EAFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEF 172 (292)
T ss_pred -------------------------------------CcCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC
Confidence 00146677865 5689999999999999999999999999998
Q ss_pred CeEEEEEeHHHhHHHHHh
Q psy15912 448 NHVVGMITRKDLARYRVW 465 (482)
Q Consensus 448 g~lvGIITr~DLl~~~~~ 465 (482)
|.++|+||++|+++...-
T Consensus 173 G~viGiVTleDIle~ivG 190 (292)
T PRK15094 173 GGVSGLVTIEDILELIVG 190 (292)
T ss_pred CCEEEEeEHHHHHHHHhC
Confidence 999999999999997653
No 41
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.8e-12 Score=107.85 Aligned_cols=112 Identities=17% Similarity=0.262 Sum_probs=93.8
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++.+++++.++++.|++.+++.+||+|++ +++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~------------------------------------------~~~~~G 39 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRR------------------------------------------ESDAYG 39 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECC------------------------------------------CCcEEE
Confidence 56789999999999999998889999999864 158999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++.+|+.+.+.....
T Consensus 40 ~v~~~dl~~~~~~~~~---------------------------------------------------------------- 55 (114)
T cd04630 40 IVTMRDILKKVVAEGR---------------------------------------------------------------- 55 (114)
T ss_pred EEehHHHHHHHHhCCC----------------------------------------------------------------
Confidence 9999999875533200
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
.....++.++|.++++++++++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 56 ---------------------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 56 ---------------------DPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred ---------------------CCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 00112677889888999999999999999999999999999986 99999999999985
No 42
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=3e-12 Score=110.08 Aligned_cols=121 Identities=21% Similarity=0.377 Sum_probs=96.8
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++.+++++.++.+.|.+.+++.+||+|++ ++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G 38 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-------------------------------------------GKLVG 38 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-------------------------------------------CCEEE
Confidence 56788999999999999999999999999875 68999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++..++...+........ .+
T Consensus 39 ~v~~~~l~~~~~~~~~~~~-----------------------------~~------------------------------ 59 (122)
T cd04803 39 LLTQRDLLRAALSSLSDNG-----------------------------EE------------------------------ 59 (122)
T ss_pred EEEHHHHHHHhcccccccc-----------------------------cc------------------------------
Confidence 9999999775532210000 00
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
.. ......++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||+.|+++
T Consensus 60 -~~-----------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 60 -SL-----------------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred -cc-----------------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 00 001223788899999999999999999999999999999999998899999999999986
Q ss_pred H
Q psy15912 462 Y 462 (482)
Q Consensus 462 ~ 462 (482)
|
T Consensus 122 ~ 122 (122)
T cd04803 122 L 122 (122)
T ss_pred C
Confidence 4
No 43
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.40 E-value=4.3e-12 Score=108.23 Aligned_cols=111 Identities=20% Similarity=0.340 Sum_probs=94.1
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++.+++++.++.+.|.+.+++.+||+|++ ++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G 38 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-------------------------------------------GGVVG 38 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-------------------------------------------CCEEE
Confidence 45678999999999999999899999999875 68999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++.+|+...+.+..
T Consensus 39 ~v~~~dl~~~~~~~~----------------------------------------------------------------- 53 (115)
T cd04593 39 IITLPDLLRALEADE----------------------------------------------------------------- 53 (115)
T ss_pred EEEHHHHHHHHhccc-----------------------------------------------------------------
Confidence 999999976553210
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC--CeEEEEEeHHHh
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN--NHVVGMITRKDL 459 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~--g~lvGIITr~DL 459 (482)
.....+++++|.+++.++++++++.+++++|.+.+.+++||+|++ |+++|+||++|+
T Consensus 54 ---------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di 112 (115)
T cd04593 54 ---------------------AGEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENV 112 (115)
T ss_pred ---------------------ccccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHh
Confidence 000114778898999999999999999999999999999999887 799999999999
Q ss_pred HH
Q psy15912 460 AR 461 (482)
Q Consensus 460 l~ 461 (482)
++
T Consensus 113 ~~ 114 (115)
T cd04593 113 LL 114 (115)
T ss_pred hc
Confidence 85
No 44
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.40 E-value=1.2e-12 Score=139.67 Aligned_cols=149 Identities=17% Similarity=0.238 Sum_probs=111.5
Q ss_pred ChhHHHHHHcCCCCCCCCCC---CCccccchhhccc---CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCC
Q psy15912 188 GLYDIHIQLSGIPLLAWDPP---PLSSNITARIVKS---HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSD 261 (482)
Q Consensus 188 siy~~~L~~~g~p~l~~~~~---~~l~~l~a~dvM~---~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~ 261 (482)
.+--.+.+.+|+.+.+.... ..-.-.+++++|. ....++++++++.++++.|.++++..+||+|++.
T Consensus 66 alAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~------- 138 (502)
T PRK07107 66 NMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGT------- 138 (502)
T ss_pred HHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCC-------
Confidence 33445556666665432110 0111235777775 3456899999999999999999999999999631
Q ss_pred CccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhcccccc
Q psy15912 262 GAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRP 341 (482)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 341 (482)
.+++++|+|+..|+.... .
T Consensus 139 ---------------------------------~~gkLvGIVT~~DLr~~~--~-------------------------- 157 (502)
T PRK07107 139 ---------------------------------AHGKLLGIVTSRDYRISR--M-------------------------- 157 (502)
T ss_pred ---------------------------------cCCEEEEEEEcHHhhccc--c--------------------------
Confidence 026999999999974210 0
Q ss_pred ccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCcccccccccccccccc--Ccee
Q psy15912 342 RIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT--SPFS 419 (482)
Q Consensus 342 ~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~--~p~~ 419 (482)
....+++++|++ ++++
T Consensus 158 --------------------------------------------------------------~~~~~V~dIMt~~~~~it 175 (502)
T PRK07107 158 --------------------------------------------------------------SLDTKVKDFMTPFEKLVT 175 (502)
T ss_pred --------------------------------------------------------------CCCCCHHHHhCCCCCeEE
Confidence 011268899986 6788
Q ss_pred eeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhh
Q psy15912 420 VQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR 466 (482)
Q Consensus 420 V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~ 466 (482)
+++++++.+|+++|.+.+++++||||++|+++|+||++|+++...+.
T Consensus 176 v~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P 222 (502)
T PRK07107 176 ANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENP 222 (502)
T ss_pred ECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccCh
Confidence 99999999999999999999999999889999999999999876443
No 45
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=3.6e-12 Score=110.14 Aligned_cols=124 Identities=16% Similarity=0.303 Sum_probs=96.8
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.+++++.++.++++.|.+.+++.+||+|++ +++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~------------------------------------------~~~~~G 39 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG------------------------------------------TGKLVG 39 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCC------------------------------------------CCEEEE
Confidence 56788999999999999999999999999874 269999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++..|+...+......+. .+ ..
T Consensus 40 ~v~~~dl~~~~~~~~~~~~--~~-----------------------------------------------------~~-- 62 (125)
T cd04631 40 IITATDILKYLGGGEKFNK--IK-----------------------------------------------------TG-- 62 (125)
T ss_pred EEEHHHHHHHhhccchhcc--cc-----------------------------------------------------cc--
Confidence 9999999876543210000 00 00
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
. .......++.++|.++++++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 63 ---~---------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 63 ---N---------------GLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred ---c---------------cchhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 0 0000123677888889999999999999999999999999999987799999999999986
Q ss_pred H
Q psy15912 462 Y 462 (482)
Q Consensus 462 ~ 462 (482)
+
T Consensus 125 ~ 125 (125)
T cd04631 125 A 125 (125)
T ss_pred C
Confidence 4
No 46
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=6.4e-12 Score=106.15 Aligned_cols=111 Identities=21% Similarity=0.378 Sum_probs=93.7
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++.++.++.++.+.+.+.+++.+||+|++ ++++|
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G 38 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-------------------------------------------GRLVG 38 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-------------------------------------------CCEEE
Confidence 56788999999999999999999999999875 58999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++..++...+.....
T Consensus 39 iv~~~~l~~~~~~~~~---------------------------------------------------------------- 54 (113)
T cd04623 39 IFSERDIVRKVALRGA---------------------------------------------------------------- 54 (113)
T ss_pred EEehHHHHHHHhhcCC----------------------------------------------------------------
Confidence 9999999775532100
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
.....++.++|.+++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 55 ---------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 55 ---------------------SALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ---------------------CccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 00012578889888999999999999999999999999999986 99999999999975
No 47
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.39 E-value=5e-12 Score=105.96 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=49.1
Q ss_pred cccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 409 LNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 409 v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
+.++|.+.+.++.+++++.++++.|.+.+...+||+|++|+++|+||++|++++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~~ 106 (106)
T cd04582 53 CGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIADY 106 (106)
T ss_pred hhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 556787778889999999999999999999999999988999999999999853
No 48
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4.3e-12 Score=111.27 Aligned_cols=54 Identities=24% Similarity=0.497 Sum_probs=50.7
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
++.++|.++++++.+++++.++.++|.+.+.+.+||+|+ |+++|+||++|+++|
T Consensus 79 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 79 KVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS 132 (132)
T ss_pred CHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence 688889999999999999999999999999999999987 999999999999864
No 49
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=8.4e-12 Score=105.31 Aligned_cols=108 Identities=19% Similarity=0.373 Sum_probs=93.6
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912 221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV 300 (482)
Q Consensus 221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv 300 (482)
+++.++.++.++.++++.+.++++..+||+|++ |+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~ 38 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-------------------------------------------GRLV 38 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-------------------------------------------CcEE
Confidence 567789999999999999998889999999875 6999
Q ss_pred EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912 301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS 380 (482)
Q Consensus 301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|+++.+++...+....
T Consensus 39 G~v~~~~l~~~~~~~~---------------------------------------------------------------- 54 (110)
T cd04605 39 GIVTSWDISKAVARDK---------------------------------------------------------------- 54 (110)
T ss_pred EEEeHHHHHHHHhhCc----------------------------------------------------------------
Confidence 9999999875442210
Q ss_pred hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912 381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460 (482)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl 460 (482)
.++.++|.+++.+++++++++++++.|.+.+.+.+||+|++|+++|+||++|++
T Consensus 55 --------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~ 108 (110)
T cd04605 55 --------------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS 108 (110)
T ss_pred --------------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence 146677888899999999999999999999999999999889999999999996
Q ss_pred H
Q psy15912 461 R 461 (482)
Q Consensus 461 ~ 461 (482)
+
T Consensus 109 ~ 109 (110)
T cd04605 109 K 109 (110)
T ss_pred h
Confidence 4
No 50
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=6.9e-12 Score=106.60 Aligned_cols=109 Identities=20% Similarity=0.365 Sum_probs=92.7
Q ss_pred eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEE
Q psy15912 223 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGL 302 (482)
Q Consensus 223 ~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGi 302 (482)
..++.++.++.++.+.|.+.++..+||+|++ ++++|+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G~ 40 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-------------------------------------------GRLLGT 40 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-------------------------------------------CCEEEE
Confidence 4578899999999999998888899999875 689999
Q ss_pred EeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhh
Q psy15912 303 ILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEI 382 (482)
Q Consensus 303 Is~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 382 (482)
++.+|+.+.+....
T Consensus 41 v~~~dl~~~~~~~~------------------------------------------------------------------ 54 (113)
T cd04607 41 VTDGDIRRALLKGL------------------------------------------------------------------ 54 (113)
T ss_pred EEcHHHHHHHhcCC------------------------------------------------------------------
Confidence 99999876543210
Q ss_pred hhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 383 FHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
....++.++|.+.+.++++++++.++++.|.+.+.+++||+|++|+++|+||++|++.
T Consensus 55 ---------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 55 ---------------------SLDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred ---------------------CcCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 0011577889888999999999999999999999999999998899999999999974
No 51
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=8.7e-12 Score=105.57 Aligned_cols=110 Identities=21% Similarity=0.424 Sum_probs=93.8
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.+++++.++.++.+.+...+++.+||+|++ ++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G 38 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-------------------------------------------ERPIG 38 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-------------------------------------------CCEEE
Confidence 46688999999999999988889999999875 68999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++..++.+.+....
T Consensus 39 ~v~~~~l~~~~~~~~----------------------------------------------------------------- 53 (112)
T cd04624 39 IVTERDIVRAVAAGI----------------------------------------------------------------- 53 (112)
T ss_pred EeeHHHHHHHHhccC-----------------------------------------------------------------
Confidence 999999976553320
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
....++.++|++++.++++++++.++.+.|.+.+...+||+|++|+++|++|++|+++
T Consensus 54 ----------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 54 ----------------------DLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ----------------------CCccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 0011567888889999999999999999999999999999998899999999999974
No 52
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=4.8e-12 Score=108.85 Aligned_cols=54 Identities=24% Similarity=0.466 Sum_probs=50.9
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++.++|.+++.++++++++.++++.|.+.+.+++||+|++|+++|++|++|+++
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 68 TVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred cHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 577889889999999999999999999999999999998899999999999985
No 53
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=5.8e-12 Score=107.23 Aligned_cols=54 Identities=33% Similarity=0.527 Sum_probs=47.7
Q ss_pred ccccccccC--ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTS--PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~--p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
+++++|.+. ++++.+++++.++++.|++.+.+++||+|++|+++|+||.+|+++
T Consensus 58 ~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 58 TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred chhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 466777642 568999999999999999999999999998899999999999874
No 54
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=9.5e-12 Score=105.48 Aligned_cols=110 Identities=19% Similarity=0.341 Sum_probs=92.9
Q ss_pred eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEE
Q psy15912 223 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGL 302 (482)
Q Consensus 223 ~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGi 302 (482)
+.++.+++++.++++.+.+.+++.+||+|++ ++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-------------------------------------------~~~~G~ 39 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-------------------------------------------KRLVGI 39 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-------------------------------------------CCEEEE
Confidence 5678999999999999999888999999875 689999
Q ss_pred EeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhh
Q psy15912 303 ILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEI 382 (482)
Q Consensus 303 Is~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 382 (482)
++..|+.+......
T Consensus 40 v~~~dl~~~~~~~~------------------------------------------------------------------ 53 (113)
T cd04615 40 ITRYDVLSYALESE------------------------------------------------------------------ 53 (113)
T ss_pred EEHHHHHHhhhhhh------------------------------------------------------------------
Confidence 99999876432210
Q ss_pred hhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 383 FHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
.....++.++|.+++.++++++++.++.+.|.+.+...+||+|++|+++|+||++|+++
T Consensus 54 --------------------~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 54 --------------------ELKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred --------------------hhcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 00012577889889999999999999999999999999999998899999999999974
No 55
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.37 E-value=2.9e-12 Score=135.93 Aligned_cols=121 Identities=19% Similarity=0.292 Sum_probs=105.9
Q ss_pred ccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912 210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD 289 (482)
Q Consensus 210 l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (482)
+..+++.++|.++++++.+++++.++.+.|++..++.+||+|+
T Consensus 85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~------------------------------------- 127 (475)
T TIGR01303 85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE------------------------------------- 127 (475)
T ss_pred HhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-------------------------------------
Confidence 5577888999999999999999999999999988888888875
Q ss_pred CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912 290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE 369 (482)
Q Consensus 290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~ 369 (482)
++++|+|+.+|+... .
T Consensus 128 -------gklvGIVT~rDL~~~---~------------------------------------------------------ 143 (475)
T TIGR01303 128 -------DRPVGLVTDSDLLGV---D------------------------------------------------------ 143 (475)
T ss_pred -------CEEEEEEEHHHhhcC---C------------------------------------------------------
Confidence 489999999997311 0
Q ss_pred CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912 370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH 449 (482)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~ 449 (482)
...+++++|+++++++++++++.++.++|.+.+.+++||||++|+
T Consensus 144 -----------------------------------~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~ 188 (475)
T TIGR01303 144 -----------------------------------RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGT 188 (475)
T ss_pred -----------------------------------CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence 001688999999999999999999999999999999999998999
Q ss_pred EEEEEeHHHhHHHHHhh
Q psy15912 450 VVGMITRKDLARYRVWR 466 (482)
Q Consensus 450 lvGIITr~DLl~~~~~~ 466 (482)
++|+||++||++...+.
T Consensus 189 LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 189 LAGILTRTGALRATIYT 205 (475)
T ss_pred EEEEEEHHHHHHHHhCC
Confidence 99999999999976654
No 56
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.36 E-value=6.7e-12 Score=133.53 Aligned_cols=146 Identities=18% Similarity=0.273 Sum_probs=114.2
Q ss_pred cCCChhHHHHHHcCCCCCCC-CCCCCccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCc
Q psy15912 185 FTEGLYDIHIQLSGIPLLAW-DPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGA 263 (482)
Q Consensus 185 ~~~siy~~~L~~~g~p~l~~-~~~~~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~ 263 (482)
+..-+++.|++.+++..... .....+.+++++|+|.+++.++.+++++.++++.|++.++..+||+|++
T Consensus 306 ~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~---------- 375 (454)
T TIGR01137 306 MTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEA---------- 375 (454)
T ss_pred cCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC----------
Confidence 33444567888887643221 1224588899999999999999999999999999998889999999875
Q ss_pred cccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhcccccccc
Q psy15912 264 EQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRI 343 (482)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 343 (482)
++++|+|+.+|+.+.+....
T Consensus 376 ---------------------------------~~~~Givt~~dl~~~~~~~~--------------------------- 395 (454)
T TIGR01137 376 ---------------------------------GKVLGSVTLRELLSALFAGK--------------------------- 395 (454)
T ss_pred ---------------------------------CeEEEEEEHHHHHHHHhccC---------------------------
Confidence 68999999999877543210
Q ss_pred CCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCC
Q psy15912 344 WSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDS 423 (482)
Q Consensus 344 ~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~ 423 (482)
.....++.++|++++.+++++
T Consensus 396 -----------------------------------------------------------~~~~~~v~~im~~~~~~v~~~ 416 (454)
T TIGR01137 396 -----------------------------------------------------------ANPDDAVSKVMSKKFIQIGEG 416 (454)
T ss_pred -----------------------------------------------------------CCcCCCHHHhcCCCCeEECCc
Confidence 000125788899999999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 424 TSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 424 ~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
+++.++.++|.+.+ .|||+++|+++|+||++|++++
T Consensus 417 ~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~ 452 (454)
T TIGR01137 417 EKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF 452 (454)
T ss_pred CcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence 99999999998754 3555567999999999999975
No 57
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=7.3e-12 Score=106.26 Aligned_cols=112 Identities=22% Similarity=0.342 Sum_probs=93.4
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.+++++.++.++.+.|.+++...+||+|++ ++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G 38 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-------------------------------------------GNLVG 38 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-------------------------------------------CeEEE
Confidence 46788999999999999988888899999875 68999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++..++.+.+....+. .
T Consensus 39 ~v~~~~l~~~~~~~~~~--------------------------------------------------~------------ 56 (114)
T cd04629 39 FLSEQDCLKQLLESSYH--------------------------------------------------C------------ 56 (114)
T ss_pred EeehHHHHHHhhhhhhc--------------------------------------------------c------------
Confidence 99999988655332000 0
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
....++.++|++.++++++++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 57 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 57 ----------------------DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred ----------------------CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 0012678889889999999999999999999999999999986 99999999999985
No 58
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.36 E-value=3.2e-12 Score=135.68 Aligned_cols=124 Identities=21% Similarity=0.256 Sum_probs=104.4
Q ss_pred ccccchhhcccCCeeEecCCCCHHHHHHHHHh-----CCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCC
Q psy15912 210 SSNITARIVKSHPVICLRPLETVGNIIDVLKA-----TSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDS 284 (482)
Q Consensus 210 l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~-----~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (482)
+..-+|+++|++++++++++.+++++++.+++ .....+||+|++
T Consensus 128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~------------------------------- 176 (449)
T TIGR00400 128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES------------------------------- 176 (449)
T ss_pred CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-------------------------------
Confidence 34568999999999999999999999999985 233567888875
Q ss_pred CCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHh
Q psy15912 285 SHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKH 364 (482)
Q Consensus 285 ~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~ 364 (482)
++++|+++.+|+... ..
T Consensus 177 ------------~~l~GvV~l~dLl~a--~~------------------------------------------------- 193 (449)
T TIGR00400 177 ------------KHLKGVLSIRDLILA--KP------------------------------------------------- 193 (449)
T ss_pred ------------CeEEEEEEHHHHhcC--CC-------------------------------------------------
Confidence 689999999997421 00
Q ss_pred hhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEE
Q psy15912 365 KIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVV 444 (482)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVV 444 (482)
..+++++|+++++++++++++.++.+.|++.++..+|||
T Consensus 194 -----------------------------------------~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVV 232 (449)
T TIGR00400 194 -----------------------------------------EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVV 232 (449)
T ss_pred -----------------------------------------CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEE
Confidence 016889999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeHHHhHHHHHhhcc
Q psy15912 445 NNNNHVVGMITRKDLARYRVWRHG 468 (482)
Q Consensus 445 D~~g~lvGIITr~DLl~~~~~~~~ 468 (482)
|++|+++|+||.+|+++....+..
T Consensus 233 D~~g~lvGiIt~~Dil~~l~~~~~ 256 (449)
T TIGR00400 233 DNEGRLVGIVTVDDIIDVIQSEAT 256 (449)
T ss_pred cCCCeEEEEEEHHHHHHHHHhhhH
Confidence 999999999999999987655443
No 59
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=1.3e-11 Score=104.23 Aligned_cols=108 Identities=31% Similarity=0.504 Sum_probs=93.0
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912 221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV 300 (482)
Q Consensus 221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv 300 (482)
+++.++.++.++.++.+.+++.++..+||+|+ ++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------------------------------------~~~~ 37 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--------------------------------------------GRVV 37 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--------------------------------------------CEEE
Confidence 46788999999999999999888899999986 3899
Q ss_pred EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912 301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS 380 (482)
Q Consensus 301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|+++.+|+.+......
T Consensus 38 G~v~~~dl~~~~~~~~---------------------------------------------------------------- 53 (110)
T cd04595 38 GIISRRDVEKALRHGL---------------------------------------------------------------- 53 (110)
T ss_pred EEEEHHHHHHHHhccc----------------------------------------------------------------
Confidence 9999999876542210
Q ss_pred hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912 381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460 (482)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl 460 (482)
...++.++|.+.++++++++++.+++++|.+.+.+++||+| +|+++|+||++|++
T Consensus 54 ------------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~ 108 (110)
T cd04595 54 ------------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLL 108 (110)
T ss_pred ------------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhh
Confidence 01257788989999999999999999999999999999998 88999999999997
Q ss_pred H
Q psy15912 461 R 461 (482)
Q Consensus 461 ~ 461 (482)
+
T Consensus 109 ~ 109 (110)
T cd04595 109 R 109 (110)
T ss_pred c
Confidence 5
No 60
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.4e-11 Score=106.51 Aligned_cols=120 Identities=16% Similarity=0.283 Sum_probs=92.8
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++.+++++.++++.|.+.++..+||+|++ +++++|
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~------------------------------------------~~~~~G 39 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE------------------------------------------SGEVIG 39 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCC------------------------------------------CCcEEE
Confidence 56789999999999999998889999999974 258999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++.+|+.+.+........ . .
T Consensus 40 iv~~~dl~~~~~~~~~~~~-----------------------------------------------------~-----~- 60 (123)
T cd04627 40 ILSQRRLVEFLWENARSFP-----------------------------------------------------G-----L- 60 (123)
T ss_pred EEEHHHHHHHHHHhHHhcc-----------------------------------------------------c-----h-
Confidence 9999999876533210000 0 0
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl 460 (482)
+.. ......+.++|.+++.++++++++.+|++.|.+.+.+++||+|++|+++|+||+.|+-
T Consensus 61 ---~~~---------------~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 61 ---DPL---------------YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred ---hhh---------------hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 000 0001134457888899999999999999999999999999999889999999999974
No 61
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.35 E-value=4.8e-12 Score=134.18 Aligned_cols=123 Identities=21% Similarity=0.384 Sum_probs=104.8
Q ss_pred ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912 212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 291 (482)
Q Consensus 212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (482)
-++.+++|.+++.++.+++++.++++.|.+++++.+||+|++.
T Consensus 79 Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~------------------------------------- 121 (450)
T TIGR01302 79 VKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGD------------------------------------- 121 (450)
T ss_pred hccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCC-------------------------------------
Confidence 3466788999999999999999999999999999999998751
Q ss_pred CCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCC
Q psy15912 292 RKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQ 371 (482)
Q Consensus 292 ~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~ 371 (482)
..++++|+|+.+|+.....
T Consensus 122 ---~~~~lvGIVt~rDL~~~~~---------------------------------------------------------- 140 (450)
T TIGR01302 122 ---MTGKLVGIITKRDIRFVKD---------------------------------------------------------- 140 (450)
T ss_pred ---CCCeEEEEEEHHHHhhhhc----------------------------------------------------------
Confidence 0158999999999853210
Q ss_pred CCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccc-cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912 372 NWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMN-TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV 450 (482)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~-~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l 450 (482)
...+++++|+ ++++++++++++.++++.|.+.+.+.+||+|++|++
T Consensus 141 ---------------------------------~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~l 187 (450)
T TIGR01302 141 ---------------------------------KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGEL 187 (450)
T ss_pred ---------------------------------CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcE
Confidence 0116888898 489999999999999999999999999999999999
Q ss_pred EEEEeHHHhHHHHHh
Q psy15912 451 VGMITRKDLARYRVW 465 (482)
Q Consensus 451 vGIITr~DLl~~~~~ 465 (482)
+|+||++|+++...+
T Consensus 188 vGiVT~~DIl~~~~~ 202 (450)
T TIGR01302 188 VGLITMKDIVKRRKF 202 (450)
T ss_pred EEEEEhHHhhhcccC
Confidence 999999999987544
No 62
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.35 E-value=1.2e-11 Score=105.42 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=49.3
Q ss_pred ccccccccCceeeeC--CCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQD--STSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~--~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
+++++|.+.+.++.. ++++.++++.|++.+.+++||+|++|+++|+||++|+++
T Consensus 58 ~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 58 PLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 577888888888866 999999999999999999999998899999999999875
No 63
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1e-11 Score=105.63 Aligned_cols=115 Identities=23% Similarity=0.354 Sum_probs=92.0
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++++++++.++++.+++.+.+.+||+|++ ++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G 38 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-------------------------------------------GKYVG 38 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-------------------------------------------CcEEE
Confidence 57789999999999999999889999999875 68999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++.+++.+.+..... .+..
T Consensus 39 iv~~~dl~~~~~~~~~------------------------------------------------------------~~~~ 58 (116)
T cd04643 39 TISLTDILWKLKGLEN------------------------------------------------------------LDLE 58 (116)
T ss_pred EEeHHHHHHHhhccCc------------------------------------------------------------hhHH
Confidence 9999999765532100 0000
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
.+ ...+++++|.+.+.++++++++.++++.|.+.+ .+||+|++|+++|+||++|+++
T Consensus 59 ~~---------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 59 RL---------------------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred HH---------------------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 00 012578889999999999999999999998754 5999998899999999999986
Q ss_pred H
Q psy15912 462 Y 462 (482)
Q Consensus 462 ~ 462 (482)
+
T Consensus 116 ~ 116 (116)
T cd04643 116 A 116 (116)
T ss_pred C
Confidence 4
No 64
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.3e-11 Score=104.44 Aligned_cols=109 Identities=15% Similarity=0.265 Sum_probs=92.1
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.+++++.++.++++.+.+.+++.+||+|++ ++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G 38 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-------------------------------------------EKLKG 38 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-------------------------------------------CCEEE
Confidence 56788999999999999998899999999875 68999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++.+|+........
T Consensus 39 ~v~~~dl~~~~~~~~----------------------------------------------------------------- 53 (111)
T cd04626 39 VVTFTDILDLDLFES----------------------------------------------------------------- 53 (111)
T ss_pred EEehHHhHHHHhhcc-----------------------------------------------------------------
Confidence 999999875432110
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
....++.++|.+++.++.+++++.++.+.|.+.+...+||+|+ |+++|+||++|+++
T Consensus 54 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 54 ----------------------FLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred ----------------------cccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 0011577788889999999999999999999999999999986 89999999999974
No 65
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.35 E-value=6.5e-12 Score=134.49 Aligned_cols=118 Identities=20% Similarity=0.374 Sum_probs=103.9
Q ss_pred chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912 214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK 293 (482)
Q Consensus 214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (482)
.++|+|.++++++.+++++.++++.|.+++++.+||+|++
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~---------------------------------------- 127 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDEN---------------------------------------- 127 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC----------------------------------------
Confidence 5789999999999999999999999999999999999965
Q ss_pred CCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCC
Q psy15912 294 ESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNW 373 (482)
Q Consensus 294 ~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~ 373 (482)
++++|+|+.+|+.... .
T Consensus 128 ---g~lvGiVt~~DL~~~~--~---------------------------------------------------------- 144 (486)
T PRK05567 128 ---GKLVGIITNRDVRFET--D---------------------------------------------------------- 144 (486)
T ss_pred ---CEEEEEEEHHHhhhcc--c----------------------------------------------------------
Confidence 6999999999984210 0
Q ss_pred CCCCCChhhhhhhCCCCCCCCccccCccccccccccccccc-cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEE
Q psy15912 374 PDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMN-TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG 452 (482)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~-~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvG 452 (482)
...++.++|+ ++++++++++++.++.+.|.+.+.+.+||+|++|+++|
T Consensus 145 -------------------------------~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvG 193 (486)
T PRK05567 145 -------------------------------LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKG 193 (486)
T ss_pred -------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEE
Confidence 0115788898 78899999999999999999999999999999999999
Q ss_pred EEeHHHhHHHHHh
Q psy15912 453 MITRKDLARYRVW 465 (482)
Q Consensus 453 IITr~DLl~~~~~ 465 (482)
+||++|+++...+
T Consensus 194 iIT~~DLl~~~~~ 206 (486)
T PRK05567 194 LITVKDIEKAEEF 206 (486)
T ss_pred EEEhHHhhhhhhC
Confidence 9999999987644
No 66
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.4e-11 Score=107.20 Aligned_cols=125 Identities=24% Similarity=0.392 Sum_probs=94.7
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++.++.+++++++.|.+.+++.+||+|++ ++++|
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------------------------------------~~~~G 38 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-------------------------------------------GKLTG 38 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-------------------------------------------CcEEE
Confidence 46788999999999999999999999999976 68999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++..|+...+......... . .....
T Consensus 39 ~it~~dl~~~~~~~~~~~~~----------------~-------------------------~~~~~------------- 64 (128)
T cd04632 39 IVTRHDIVDFVVRDRDKART----------------G-------------------------DRSGE------------- 64 (128)
T ss_pred EEEHHHHHHHHhhhhhhcch----------------h-------------------------hhhhh-------------
Confidence 99999998754321000000 0 00000
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEeHHHh
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVN--NNNHVVGMITRKDL 459 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD--~~g~lvGIITr~DL 459 (482)
. ......++.++|+++++++++++++.++.+.|.+.+.+.+||++ ++|+++|+||++|+
T Consensus 65 ---~----------------~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di 125 (128)
T cd04632 65 ---K----------------ERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDV 125 (128)
T ss_pred ---h----------------hhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhh
Confidence 0 00011257888999999999999999999999999999999994 46899999999999
Q ss_pred HHH
Q psy15912 460 ARY 462 (482)
Q Consensus 460 l~~ 462 (482)
+++
T Consensus 126 ~~~ 128 (128)
T cd04632 126 LRA 128 (128)
T ss_pred hcC
Confidence 863
No 67
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.34 E-value=7.6e-12 Score=105.30 Aligned_cols=54 Identities=22% Similarity=0.377 Sum_probs=48.8
Q ss_pred ccccccccCceeeeC-CCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQD-STSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~-~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++.++|++.+.++.+ ++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 55 ~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 55 PVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 567788877777777 999999999999999999999998899999999999985
No 68
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=1.2e-11 Score=102.83 Aligned_cols=45 Identities=13% Similarity=0.399 Sum_probs=42.8
Q ss_pred ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 417 p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++
T Consensus 51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 778999999999999999999999999998899999999999985
No 69
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.34 E-value=1.4e-11 Score=104.31 Aligned_cols=112 Identities=19% Similarity=0.299 Sum_probs=94.4
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.+++++.++.++.+.+.+.++..+||+|++ ++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G 39 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-------------------------------------------GRLVG 39 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-------------------------------------------CCEEE
Confidence 45678999999999999988888899999875 68999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++..++.+.+.....
T Consensus 40 ~v~~~~i~~~~~~~~~---------------------------------------------------------------- 55 (114)
T cd04604 40 IFTDGDLRRALEKGLD---------------------------------------------------------------- 55 (114)
T ss_pred EechHHHHHHHhccCc----------------------------------------------------------------
Confidence 9999998876543200
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
....++.++|.+.+.++++++++.++.+.|.+.+...+||+|++|+++|+||++|+++
T Consensus 56 ----------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 56 ----------------------ILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred ----------------------cccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 0011578889988999999999999999999999999999998899999999999985
Q ss_pred H
Q psy15912 462 Y 462 (482)
Q Consensus 462 ~ 462 (482)
+
T Consensus 114 ~ 114 (114)
T cd04604 114 A 114 (114)
T ss_pred C
Confidence 3
No 70
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.33 E-value=1.6e-11 Score=105.05 Aligned_cols=54 Identities=28% Similarity=0.443 Sum_probs=51.0
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 68 KVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred CHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 678889999999999999999999999999999999998899999999999986
No 71
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.4e-11 Score=102.94 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=48.6
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl 460 (482)
++.++|.+.+.++++++++.++++.|.+.+.+++||+|+ |+++|+||++|++
T Consensus 52 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 52 LVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred CHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 467788889999999999999999999999999999986 9999999999987
No 72
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=2.2e-11 Score=104.79 Aligned_cols=55 Identities=29% Similarity=0.507 Sum_probs=51.6
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
++.++|.++++++++++++.++.+.|.+.+...+||+|++|+++|++|++|+++|
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 68 RAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred HHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 5788899999999999999999999999999999999988999999999999864
No 73
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=2.2e-11 Score=103.68 Aligned_cols=54 Identities=20% Similarity=0.485 Sum_probs=49.5
Q ss_pred ccccccccCceeeeCC--CCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDS--TSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~--~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++.++|.+.+.+++++ +++.++++.|.+.+...+||+|++|+++|+||++|+++
T Consensus 59 ~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 59 PIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred CHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 5778888888889887 79999999999999999999998899999999999985
No 74
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.9e-11 Score=106.29 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=47.2
Q ss_pred cccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 411 LFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 411 ~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
..|.+++.++++++++.++.++|.+.+.+++||+|++++++|+||+.|+++
T Consensus 75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 457778899999999999999999999999999998899999999999975
No 75
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.33 E-value=2.7e-11 Score=102.06 Aligned_cols=109 Identities=21% Similarity=0.432 Sum_probs=92.9
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++++++++.++++.|.+.++..+||+|+ ++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--------------------------------------------~~~~G 37 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--------------------------------------------GRPLG 37 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--------------------------------------------CEEEE
Confidence 4678899999999999999888899999986 38999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++.+|+.+......
T Consensus 38 ~v~~~~l~~~~~~~~----------------------------------------------------------------- 52 (111)
T cd04611 38 IVTERDILRLLASGP----------------------------------------------------------------- 52 (111)
T ss_pred EEeHHHHHHHHhcCC-----------------------------------------------------------------
Confidence 999999876543210
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
....+++++|.++++++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 53 ----------------------~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 53 ----------------------DLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred ----------------------CCCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 0012577889889999999999999999999999999999998899999999999975
No 76
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=2.4e-11 Score=107.67 Aligned_cols=53 Identities=25% Similarity=0.388 Sum_probs=49.8
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
+++++|.+++..+.+++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 82 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 82 VAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 688999999999999999999999999999999999985 89999999999985
No 77
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.32 E-value=6.9e-12 Score=134.00 Aligned_cols=123 Identities=16% Similarity=0.242 Sum_probs=104.5
Q ss_pred chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912 214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK 293 (482)
Q Consensus 214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (482)
++++.|..+++++++++++.+++++++++++..+||+|++.
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~--------------------------------------- 137 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGK--------------------------------------- 137 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc---------------------------------------
Confidence 36678888999999999999999999999999999998741
Q ss_pred CCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCC
Q psy15912 294 ESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNW 373 (482)
Q Consensus 294 ~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~ 373 (482)
.+++++|+|+.+|+... ..
T Consensus 138 -~~gkLvGIVt~~DL~~~--~~---------------------------------------------------------- 156 (495)
T PTZ00314 138 -VGGKLLGIVTSRDIDFV--KD---------------------------------------------------------- 156 (495)
T ss_pred -cCCeEEEEEEHHHHhhc--cc----------------------------------------------------------
Confidence 02689999999997521 00
Q ss_pred CCCCCChhhhhhhCCCCCCCCccccCcccccccccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEE
Q psy15912 374 PDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV 451 (482)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lv 451 (482)
...+++++|++ +++++++++++.++.++|.+.+.+.+||+|++++++
T Consensus 157 -------------------------------~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~li 205 (495)
T PTZ00314 157 -------------------------------KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELV 205 (495)
T ss_pred -------------------------------CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEE
Confidence 01268899987 889999999999999999999999999999999999
Q ss_pred EEEeHHHhHHHHHhhc
Q psy15912 452 GMITRKDLARYRVWRH 467 (482)
Q Consensus 452 GIITr~DLl~~~~~~~ 467 (482)
|+||++|+++...+..
T Consensus 206 GIIT~~DIl~~~~~p~ 221 (495)
T PTZ00314 206 ALVSRSDLKKNRGYPN 221 (495)
T ss_pred EEEEehHhhhcccCch
Confidence 9999999998865443
No 78
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.32 E-value=2.9e-11 Score=101.91 Aligned_cols=109 Identities=25% Similarity=0.432 Sum_probs=92.5
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++.++.++.++.+.|.+.+.+.+||+|+ ++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------------------------------------~~~~G 37 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--------------------------------------------GRLVG 37 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--------------------------------------------CeEEE
Confidence 5678999999999999999888899999986 38999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++..|+........
T Consensus 38 ~v~~~dl~~~~~~~~----------------------------------------------------------------- 52 (111)
T cd04612 38 IVTLADIRRVPAEGR----------------------------------------------------------------- 52 (111)
T ss_pred EEEHHHHHHHHhcCc-----------------------------------------------------------------
Confidence 999999875432210
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
....++.++|.+++.++.+++++.++.+.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 53 ----------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 53 ----------------------EATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred ----------------------ccccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 0002567778889999999999999999999999999999998899999999999975
No 79
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.31 E-value=3.2e-11 Score=101.90 Aligned_cols=110 Identities=19% Similarity=0.387 Sum_probs=90.9
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912 221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV 300 (482)
Q Consensus 221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv 300 (482)
+++.+++++.++.++.+.|.+.++..+||++++ +++++
T Consensus 1 ~~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~------------------------------------------~~~~~ 38 (111)
T cd04590 1 TDIVALDADDTLEEILELIAESGHSRFPVYDGD------------------------------------------LDNII 38 (111)
T ss_pred CceEEEcCCCCHHHHHHHHhhCCCceEEEECCC------------------------------------------CceEE
Confidence 357889999999999999998888999999874 15899
Q ss_pred EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912 301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS 380 (482)
Q Consensus 301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|+++..++.+......
T Consensus 39 G~v~~~~l~~~~~~~~---------------------------------------------------------------- 54 (111)
T cd04590 39 GVVHVKDLLRALAEGE---------------------------------------------------------------- 54 (111)
T ss_pred EEEEHHHHHHHHHcCC----------------------------------------------------------------
Confidence 9999999977553210
Q ss_pred hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912 381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460 (482)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl 460 (482)
.. .++.++|. .+.++.+++++.++.+.|.+.+.+++||+|++|+++|+||++|++
T Consensus 55 -----------------------~~-~~~~~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 109 (111)
T cd04590 55 -----------------------ED-LDLRDLLR-PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109 (111)
T ss_pred -----------------------Cc-CCHHHHhc-CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence 00 13445554 577899999999999999999999999999889999999999997
Q ss_pred H
Q psy15912 461 R 461 (482)
Q Consensus 461 ~ 461 (482)
+
T Consensus 110 ~ 110 (111)
T cd04590 110 E 110 (111)
T ss_pred c
Confidence 4
No 80
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=3.7e-11 Score=101.73 Aligned_cols=54 Identities=24% Similarity=0.449 Sum_probs=50.4
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++.++|.+.+.++.+++++.++.+.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 59 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 59 TVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 478889899999999999999999999999999999998899999999999975
No 81
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.30 E-value=4.6e-11 Score=100.74 Aligned_cols=108 Identities=25% Similarity=0.461 Sum_probs=92.6
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++.+++++.++.+.|...++..+||+++ ++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------------------------------------~~~~G 37 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--------------------------------------------GKLVG 37 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--------------------------------------------CEEEE
Confidence 5678899999999999999888999999986 38999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++.+|+.+......
T Consensus 38 ~v~~~~l~~~~~~~~----------------------------------------------------------------- 52 (110)
T cd04588 38 IVTLSDIAHAIARGL----------------------------------------------------------------- 52 (110)
T ss_pred EEEHHHHHHHHhccc-----------------------------------------------------------------
Confidence 999999876543210
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
...++.++|.+.+.++++++++.++.+.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 53 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 53 -----------------------ELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred -----------------------cccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 002577788888999999999999999999999999999998899999999999975
No 82
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.30 E-value=3.6e-11 Score=101.81 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=50.5
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++.++|++.+.++++++++.++++.|.+.+.+++||+|++++++|+||++|++.
T Consensus 59 ~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 59 LVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 577889989999999999999999999999999999998899999999999974
No 83
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.30 E-value=1.8e-11 Score=130.95 Aligned_cols=119 Identities=13% Similarity=0.212 Sum_probs=101.6
Q ss_pred cccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q psy15912 218 VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPG 297 (482)
Q Consensus 218 vM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 297 (482)
.|.++++++.+++++.++++.|.++++..+||+|++. .++
T Consensus 105 gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~----------------------------------------~~G 144 (505)
T PLN02274 105 GFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGT----------------------------------------MGS 144 (505)
T ss_pred cccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC----------------------------------------cCC
Confidence 3778999999999999999999999999999998731 026
Q ss_pred eEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCC
Q psy15912 298 RLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQ 377 (482)
Q Consensus 298 ~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~ 377 (482)
+++|+|+..|+.... .
T Consensus 145 klvGIVT~~DL~~v~--~-------------------------------------------------------------- 160 (505)
T PLN02274 145 KLLGYVTKRDWDFVN--D-------------------------------------------------------------- 160 (505)
T ss_pred eEEEEEEHHHHhhcc--c--------------------------------------------------------------
Confidence 999999999984321 0
Q ss_pred CChhhhhhhCCCCCCCCccccCccccccccccccccccC--ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEe
Q psy15912 378 LSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTS--PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMIT 455 (482)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~--p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIIT 455 (482)
...+++++|++. ++++++++++.+++++|.+.+.+.+||||++++++|+||
T Consensus 161 ---------------------------~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvIT 213 (505)
T PLN02274 161 ---------------------------RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVT 213 (505)
T ss_pred ---------------------------cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEE
Confidence 012688999877 679999999999999999999999999999999999999
Q ss_pred HHHhHHHHHhhc
Q psy15912 456 RKDLARYRVWRH 467 (482)
Q Consensus 456 r~DLl~~~~~~~ 467 (482)
++|++++..+..
T Consensus 214 r~DIlk~~~~p~ 225 (505)
T PLN02274 214 RTDVKRVKGYPK 225 (505)
T ss_pred HHHHHHHhhCcC
Confidence 999999987643
No 84
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.30 E-value=1.8e-11 Score=121.05 Aligned_cols=114 Identities=15% Similarity=0.236 Sum_probs=99.1
Q ss_pred ccchhhcccCC-eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy15912 212 NITARIVKSHP-VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA 290 (482)
Q Consensus 212 ~l~a~dvM~~~-~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (482)
.++|+|+|.++ +.++++++++.++++.|.+.+++.+||+|++
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~------------------------------------- 196 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN------------------------------------- 196 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-------------------------------------
Confidence 47999999988 9999999999999999998889999999975
Q ss_pred CCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccC
Q psy15912 291 SRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKEN 370 (482)
Q Consensus 291 ~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~ 370 (482)
++++|+++.+|+.+.+....
T Consensus 197 ------g~~~Givt~~dl~~~~~~~~------------------------------------------------------ 216 (268)
T TIGR00393 197 ------NQLVGVFTDGDLRRALLGGG------------------------------------------------------ 216 (268)
T ss_pred ------CCEEEEEEcHHHHHHHhcCC------------------------------------------------------
Confidence 68999999999976532110
Q ss_pred CCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912 371 QNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV 450 (482)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l 450 (482)
....+++++|.+.+.++++++++.+|.++|.+.+.+++||+|++|++
T Consensus 217 ---------------------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l 263 (268)
T TIGR00393 217 ---------------------------------SLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKV 263 (268)
T ss_pred ---------------------------------cccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeE
Confidence 00126889999999999999999999999999999999999988999
Q ss_pred EEEEe
Q psy15912 451 VGMIT 455 (482)
Q Consensus 451 vGIIT 455 (482)
+|+|+
T Consensus 264 ~GvI~ 268 (268)
T TIGR00393 264 LGVLH 268 (268)
T ss_pred EEEEC
Confidence 99985
No 85
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=2.4e-11 Score=105.77 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=47.0
Q ss_pred ccccccccCceee------eCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSV------QDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V------~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~ 461 (482)
+++++|++++..+ .+++++.++++.|.+.+.+++||+|++ |+++|+||+.|+++
T Consensus 65 ~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 65 TVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred EHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 5788898766443 378999999999999999999999986 79999999999975
No 86
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.29 E-value=5.6e-11 Score=101.13 Aligned_cols=114 Identities=21% Similarity=0.365 Sum_probs=98.2
Q ss_pred hhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q psy15912 216 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKES 295 (482)
Q Consensus 216 ~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (482)
.++|.++++++.+.+++.++...|.++....+||++..
T Consensus 2 ~~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~------------------------------------------ 39 (117)
T COG0517 2 KDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDG------------------------------------------ 39 (117)
T ss_pred cccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC------------------------------------------
Confidence 34566889999999999999999999999999999863
Q ss_pred CCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCC
Q psy15912 296 PGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPD 375 (482)
Q Consensus 296 ~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~ 375 (482)
+++|+++..|+.+++.....
T Consensus 40 --~l~Giit~~di~~~~~~~~~---------------------------------------------------------- 59 (117)
T COG0517 40 --KLVGIITERDILRALAAGGK---------------------------------------------------------- 59 (117)
T ss_pred --EEEEEEEHHHHHHHHhccCC----------------------------------------------------------
Confidence 79999999999887654310
Q ss_pred CCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHH-cCCCEEEEECCCC-eEEEE
Q psy15912 376 DQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRA-LGLRHVVVVNNNN-HVVGM 453 (482)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~-~~lr~lpVVD~~g-~lvGI 453 (482)
...++.++|+++++++.++.++.++.+.|.+ .+.+++||+|+++ +++|+
T Consensus 60 -----------------------------~~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGi 110 (117)
T COG0517 60 -----------------------------RLLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGI 110 (117)
T ss_pred -----------------------------ccccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEE
Confidence 0004788898899999999999999999999 6999999999886 99999
Q ss_pred EeHHHhH
Q psy15912 454 ITRKDLA 460 (482)
Q Consensus 454 ITr~DLl 460 (482)
+|++|++
T Consensus 111 vt~~di~ 117 (117)
T COG0517 111 ITLSDIL 117 (117)
T ss_pred EEHHHcC
Confidence 9999974
No 87
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.29 E-value=5.2e-11 Score=100.61 Aligned_cols=53 Identities=25% Similarity=0.495 Sum_probs=49.4
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++.++|.++++++++++++.++.+.|.+.+..++||+|+ |+++|+||++|+++
T Consensus 58 ~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 58 PVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred CHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 577888889999999999999999999999999999986 89999999999975
No 88
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=3.4e-11 Score=100.90 Aligned_cols=55 Identities=22% Similarity=0.357 Sum_probs=50.8
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
+++++|.+.+.++++++++.++.+.|.+.+.+.+||+|++|+++|+||++|++++
T Consensus 53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~~ 107 (107)
T cd04610 53 TVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIRS 107 (107)
T ss_pred cHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhcC
Confidence 5778888889999999999999999999999999999988999999999999853
No 89
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.28 E-value=4.5e-11 Score=100.39 Aligned_cols=109 Identities=28% Similarity=0.459 Sum_probs=89.5
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++.+++++.++.+.|.+.+++.+||+|+ ++++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------------------------------------------~~~~G 37 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--------------------------------------------GRVVG 37 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--------------------------------------------CeeEE
Confidence 4678899999999999999999999999986 38999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++..|+.+.+.....
T Consensus 38 ~v~~~dl~~~~~~~~~---------------------------------------------------------------- 53 (110)
T cd04609 38 SIDESDLLDALIEGKA---------------------------------------------------------------- 53 (110)
T ss_pred EEeHHHHHHHHhcccc----------------------------------------------------------------
Confidence 9999998876532200
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
....++.++|++++.++++++++.++.++|.+ . ..+||+|++|+++|+||++|+++
T Consensus 54 ----------------------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 54 ----------------------KFSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred ----------------------ccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 00125777888888999999999999999998 3 45889988899999999999987
Q ss_pred H
Q psy15912 462 Y 462 (482)
Q Consensus 462 ~ 462 (482)
|
T Consensus 110 ~ 110 (110)
T cd04609 110 Y 110 (110)
T ss_pred C
Confidence 5
No 90
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=2.2e-11 Score=102.84 Aligned_cols=55 Identities=27% Similarity=0.388 Sum_probs=51.1
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
+++++|.+++.++.+++++.++.+.|.+.+.+++||+|++|+++|+||++|++++
T Consensus 54 ~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 54 PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred hHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 5777888889999999999999999999999999999988999999999999864
No 91
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.27 E-value=6.4e-11 Score=100.08 Aligned_cols=50 Identities=52% Similarity=0.922 Sum_probs=46.0
Q ss_pred ccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 412 im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
+|.+++.++++++++.++.+.|.+.+.+++||++ +|+++|+||++|++++
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 5777888999999999999999999999999994 7899999999999863
No 92
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.27 E-value=8.6e-11 Score=97.98 Aligned_cols=111 Identities=28% Similarity=0.482 Sum_probs=93.5
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.++.+++++.++.+.|.+.++..+||++++ ++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~G 38 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-------------------------------------------GRLVG 38 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-------------------------------------------CCEEE
Confidence 46788999999999999999888999999875 58999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++.+|+.........
T Consensus 39 ~v~~~~l~~~~~~~~~---------------------------------------------------------------- 54 (113)
T cd02205 39 IVTERDLLRALAEGGL---------------------------------------------------------------- 54 (113)
T ss_pred EEeHHHHHHHHHhccC----------------------------------------------------------------
Confidence 9999999776543210
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
.....+.++|..+++++++++++.++.+.|.+.+..++||+|++++++|++|++|+++
T Consensus 55 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 55 ----------------------DPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred ----------------------CccccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 0001256778888999999999999999999999999999999899999999999985
No 93
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=8.8e-11 Score=99.34 Aligned_cols=53 Identities=25% Similarity=0.419 Sum_probs=49.4
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
+++++|++.+.++++++++.+++++|.+.+.+.+||+| +|+++|+||++|+++
T Consensus 59 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 59 TVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred CHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 57888988889999999999999999999999999998 689999999999986
No 94
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.27 E-value=8.9e-11 Score=99.27 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=49.7
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
++.++|.++++.+++++++.++.+.|.+.+.+.+||+| +|+++|+||++|++++
T Consensus 58 ~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~~ 111 (111)
T cd04589 58 PVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-GGEVVGVLEQTDLLSF 111 (111)
T ss_pred CHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEee-CCEEEEEEEhHHhhcC
Confidence 57788988999999999999999999999999999997 4899999999999864
No 95
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=6.5e-11 Score=101.58 Aligned_cols=54 Identities=26% Similarity=0.458 Sum_probs=50.2
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
++.++|.+++.++++++++.++.++|.+.+.+++||+|+ |+++|+||++|++++
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 68 PVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred CHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 677889889999999999999999999999999999986 999999999999864
No 96
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25 E-value=1.6e-10 Score=97.73 Aligned_cols=110 Identities=24% Similarity=0.391 Sum_probs=91.3
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
++.+++++.++.++++.|.+.+++.+||+|++ +++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------------------------------------------~~~G 37 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE--------------------------------------------KPVG 37 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC--------------------------------------------EEEE
Confidence 56788999999999999999889999999853 8999
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+++..|+...+.....
T Consensus 38 ~v~~~dl~~~~~~~~~---------------------------------------------------------------- 53 (112)
T cd04802 38 IITERDLVKKVVSRNL---------------------------------------------------------------- 53 (112)
T ss_pred EEEHHHHHHHHhhccC----------------------------------------------------------------
Confidence 9999998865432100
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
.....++.++|++++.++.+++++.++.+.|.+.+.+.+||+|++ +++|+||++|+++
T Consensus 54 ---------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 54 ---------------------KPREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ---------------------CcccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 001125778888889999999999999999999999999999865 9999999999974
No 97
>PRK11573 hypothetical protein; Provisional
Probab=99.24 E-value=5.3e-10 Score=117.34 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=104.9
Q ss_pred ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912 210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK 287 (482)
Q Consensus 210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
+...+|+|+|++ ++++++.+.+++++++.+++++|+.+||++++
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~---------------------------------- 229 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS---------------------------------- 229 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC----------------------------------
Confidence 667899999986 79999999999999999999999999999865
Q ss_pred CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912 288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY 367 (482)
Q Consensus 288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~ 367 (482)
..+++|++..+|++....... +
T Consensus 230 --------~D~IiGiv~~kDll~~~~~~~--~------------------------------------------------ 251 (413)
T PRK11573 230 --------LDDAISMLRVREAYRLMTEKK--E------------------------------------------------ 251 (413)
T ss_pred --------CCceEEEEEHHHHHHHhhccC--c------------------------------------------------
Confidence 248999999999976432210 0
Q ss_pred ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912 368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN 447 (482)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~ 447 (482)
. ...++.+++ ++|++|++++++.++++.|++.+.+-..|+|+.
T Consensus 252 ----------~--------------------------~~~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy 294 (413)
T PRK11573 252 ----------F--------------------------TKENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY 294 (413)
T ss_pred ----------C--------------------------CHHHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC
Confidence 0 000344455 468889999999999999999999999999999
Q ss_pred CeEEEEEeHHHhHHHHHh
Q psy15912 448 NHVVGMITRKDLARYRVW 465 (482)
Q Consensus 448 g~lvGIITr~DLl~~~~~ 465 (482)
|..+|+||.+|+++...-
T Consensus 295 G~~~GiVTleDilEeivG 312 (413)
T PRK11573 295 GDIQGLVTVEDILEEIVG 312 (413)
T ss_pred CCeEEEeeHHHHHHHHhC
Confidence 999999999999987653
No 98
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.23 E-value=1.3e-10 Score=99.52 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=49.6
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
+++++|.+.++++.+++++.++++.|.+.+..++||+|+ |+++|++|.+|+++
T Consensus 68 ~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 68 PVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 678889999999999999999999999999999999986 89999999999975
No 99
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.23 E-value=1.2e-11 Score=135.30 Aligned_cols=116 Identities=19% Similarity=0.093 Sum_probs=91.6
Q ss_pred cCCCchhhhhhhccc--cccccC-CCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q psy15912 65 SGGGMPEKYDFLSKD--NVWKSN-GKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIG 139 (482)
Q Consensus 65 ~g~G~~~~~~~l~~~--~~~~~~-~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG 139 (482)
+|+|-+.+..+.++. ..|... .|. +.+|+|+|+|.|...|+..+||++|..++..+.. +. .....+..+|
T Consensus 96 ~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~--~~---~~~r~l~~~G 170 (574)
T PRK01862 96 KGGKTDYMEAVALGDGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHF--DP---PRLRLLVACG 170 (574)
T ss_pred cCCcHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCC--CH---HHHHHHHHHH
Confidence 366666666666443 555443 444 9999999999999999999999999999987632 11 2345577899
Q ss_pred HHHHhhhhhchhHHHHHHHHHhh-CCc--hhhHHHHHHHHHHHHHhhhc
Q psy15912 140 AAAQLGGVVRMTISLTIILIEAT-GNI--SFGLPLMLTLITAKWIGDFF 185 (482)
Q Consensus 140 ~aa~~~g~~~~p~s~~vi~~Elt-g~~--~~~~Pl~ia~~ia~~v~~~~ 185 (482)
+||-++++.++|++++++.+|.. +++ ..+.|.++++++++.+++.+
T Consensus 171 ~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~ 219 (574)
T PRK01862 171 AAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF 219 (574)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 433 67889999999999888764
No 100
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.22 E-value=1.4e-10 Score=97.22 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=48.2
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++.++|.+.++++++++++.++++.|.+.+.+.+||+| +|+++|+||++|+++
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 35567888899999999999999999999999999997 689999999999975
No 101
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=2.1e-10 Score=96.23 Aligned_cols=53 Identities=30% Similarity=0.509 Sum_probs=47.9
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++.++|.+.+.++.+++++.++.+.|++.+.+.+||+| +|+++|+||++|+++
T Consensus 53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 35667888899999999999999999999999999998 579999999999975
No 102
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=3e-10 Score=101.41 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=49.6
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++.++|.+.+.++++++++.++.+.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 90 ~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 90 KVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred CHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 678899999999999999999999999999999999986 89999999999974
No 103
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.17 E-value=1.4e-10 Score=121.03 Aligned_cols=126 Identities=20% Similarity=0.266 Sum_probs=109.4
Q ss_pred CccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912 209 LSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG 288 (482)
Q Consensus 209 ~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (482)
.+-..+++++|+.+++++++..+++++.+.|.+.+...+.|++++
T Consensus 145 e~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~----------------------------------- 189 (610)
T COG2905 145 EFILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS----------------------------------- 189 (610)
T ss_pred hHHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-----------------------------------
Confidence 344568999999999999999999999999999999988888875
Q ss_pred CCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhc
Q psy15912 289 DASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYK 368 (482)
Q Consensus 289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~ 368 (482)
+++.||||++|+...+....
T Consensus 190 --------~~~~GIvT~~dl~~~v~~~g---------------------------------------------------- 209 (610)
T COG2905 190 --------GPLLGIVTRKDLRSRVIADG---------------------------------------------------- 209 (610)
T ss_pred --------CCccceeehHHHHHHHHhcC----------------------------------------------------
Confidence 68999999999977654321
Q ss_pred cCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC
Q psy15912 369 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN 448 (482)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g 448 (482)
.....+|+++|+.+|++|..++.+-+|+-+|.+.+++|+||+ ++|
T Consensus 210 ----------------------------------~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~-e~g 254 (610)
T COG2905 210 ----------------------------------RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVT-EDG 254 (610)
T ss_pred ----------------------------------CCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeee-cCC
Confidence 012238999999999999999999999999999999999999 589
Q ss_pred eEEEEEeHHHhHHHHH
Q psy15912 449 HVVGMITRKDLARYRV 464 (482)
Q Consensus 449 ~lvGIITr~DLl~~~~ 464 (482)
+++||||.+|+++...
T Consensus 255 q~~Gilt~~dIl~l~s 270 (610)
T COG2905 255 QPLGILTLTDILRLFS 270 (610)
T ss_pred eeeEEeeHHHHHHhhC
Confidence 9999999999998643
No 104
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.16 E-value=3.5e-10 Score=96.69 Aligned_cols=54 Identities=26% Similarity=0.391 Sum_probs=48.1
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEE---EEECCCCeEEEEEeHHHhHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHV---VVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~l---pVVD~~g~lvGIITr~DLl~ 461 (482)
++.++|.+++.++.+++++.++.++|.+.+.+++ ||||++|+++|+||++|+++
T Consensus 62 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 62 PVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 5788999999999999999999999999886543 68888999999999999974
No 105
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.11 E-value=9.4e-09 Score=108.66 Aligned_cols=125 Identities=20% Similarity=0.361 Sum_probs=104.4
Q ss_pred ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912 210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK 287 (482)
Q Consensus 210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
+...+|+++|++ ++.+++.+.+++++.+.+.+++|+.+||++++
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~---------------------------------- 248 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD---------------------------------- 248 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----------------------------------
Confidence 678899999986 78999999999999999999999999999943
Q ss_pred CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912 288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY 367 (482)
Q Consensus 288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~ 367 (482)
...++|++..+|++........
T Consensus 249 --------~D~iiGiv~~Kdll~~~~~~~~-------------------------------------------------- 270 (429)
T COG1253 249 --------LDNIIGIVHVKDLLRALLDGQS-------------------------------------------------- 270 (429)
T ss_pred --------CCcEEEEEEHHHHHHHHhcCcc--------------------------------------------------
Confidence 2589999999999876644310
Q ss_pred ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912 368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN 447 (482)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~ 447 (482)
.......+. +|+.|++++++.++++.|++.+.+-..|+|+.
T Consensus 271 --------------------------------------~~~~~~~~~-~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy 311 (429)
T COG1253 271 --------------------------------------DLDLRVLVR-PPLFVPETLSLSDLLEEFREERTHMAIVVDEY 311 (429)
T ss_pred --------------------------------------ccchhhccc-CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence 001111222 78889999999999999999999999999999
Q ss_pred CeEEEEEeHHHhHHHHHh
Q psy15912 448 NHVVGMITRKDLARYRVW 465 (482)
Q Consensus 448 g~lvGIITr~DLl~~~~~ 465 (482)
|.+.|+||..|+++...-
T Consensus 312 G~~~GlVTleDIiEeIvG 329 (429)
T COG1253 312 GGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred CCeEEEeEHHHHHHHHhC
Confidence 999999999999998654
No 106
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.10 E-value=4.7e-10 Score=116.88 Aligned_cols=118 Identities=20% Similarity=0.189 Sum_probs=99.6
Q ss_pred ccCCCchhhhhhhccccc---ccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q psy15912 64 VSGGGMPEKYDFLSKDNV---WKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYAL 137 (482)
Q Consensus 64 ~~g~G~~~~~~~l~~~~~---~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~ 137 (482)
..|.|++.+...++++.. +.. ..|+ +.+|+++|+|+|.+.|++.+||++|..++..++. + ..+...+..
T Consensus 61 ~~g~G~~~v~~~~~~~~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~--~---~~~~~~l~~ 135 (383)
T cd00400 61 ARGHGIPEVIEAIALGGGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL--S---RNDRRILVA 135 (383)
T ss_pred ccCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC--C---HHHHHHHHH
Confidence 678999999888875432 222 3555 9999999999999999999999999999987642 1 135667999
Q ss_pred HHHHHHhhhhhchhHHHHHHHHHhhCCch---hhHHHHHHHHHHHHHhhhcC
Q psy15912 138 IGAAAQLGGVVRMTISLTIILIEATGNIS---FGLPLMLTLITAKWIGDFFT 186 (482)
Q Consensus 138 vG~aa~~~g~~~~p~s~~vi~~Eltg~~~---~~~Pl~ia~~ia~~v~~~~~ 186 (482)
+||+|.++++.++|++++++.+|+++... .+.|.++++++++.+++.+.
T Consensus 136 ~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~ 187 (383)
T cd00400 136 CGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLF 187 (383)
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998765 78999999999999999763
No 107
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.06 E-value=4.3e-10 Score=84.10 Aligned_cols=55 Identities=27% Similarity=0.524 Sum_probs=52.2
Q ss_pred cccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 409 LNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 409 v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
++++|+++++++++++++.++.+.|++.+.+++||+|++|+++|+||++||+++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 4678999999999999999999999999999999999999999999999999874
No 108
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.02 E-value=7.2e-10 Score=116.22 Aligned_cols=120 Identities=21% Similarity=0.186 Sum_probs=100.3
Q ss_pred cccccCCCchhhhhhhcccccccc----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q psy15912 61 GVSVSGGGMPEKYDFLSKDNVWKS----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK 134 (482)
Q Consensus 61 ~~~~~g~G~~~~~~~l~~~~~~~~----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~ 134 (482)
.-...|.|++.+...++++..... +.|+ +.+|+|+|+++|.+.|++.+||++|..++..++. . ..+...
T Consensus 59 ~p~~~g~G~~~v~~~l~~~~~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~----~-~~~~~~ 133 (402)
T cd01031 59 APEAKGSGIPQVEGVLAGLLPPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT----S-PEERRQ 133 (402)
T ss_pred CCccCCCCHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC----C-HHHHHH
Confidence 445679999999999998743211 3555 9999999999999999999999999999986532 1 134677
Q ss_pred HHHHHHHHHhhhhhchhHHHHHHHHH-hhCCch--hhHHHHHHHHHHHHHhhhc
Q psy15912 135 YALIGAAAQLGGVVRMTISLTIILIE-ATGNIS--FGLPLMLTLITAKWIGDFF 185 (482)
Q Consensus 135 ~a~vG~aa~~~g~~~~p~s~~vi~~E-ltg~~~--~~~Pl~ia~~ia~~v~~~~ 185 (482)
+..+||+|.++++.++|++++++.+| +++++. .+.|+++++++++.+++.+
T Consensus 134 l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 187 (402)
T cd01031 134 LIAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF 187 (402)
T ss_pred HHHHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999 777654 7899999999999998864
No 109
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.01 E-value=1e-09 Score=115.12 Aligned_cols=120 Identities=23% Similarity=0.273 Sum_probs=104.1
Q ss_pred ccchhhcccCCeeEecCCCCHHHHHHHHHhC-----CCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCC
Q psy15912 212 NITARIVKSHPVICLRPLETVGNIIDVLKAT-----SHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSH 286 (482)
Q Consensus 212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~-----~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
.-+|+-+|+.+.++++++.|++++++.+++. ..+.+.|+|++
T Consensus 131 e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~--------------------------------- 177 (451)
T COG2239 131 EDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK--------------------------------- 177 (451)
T ss_pred hhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc---------------------------------
Confidence 3489999999999999999999999999854 34678899986
Q ss_pred CCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhh
Q psy15912 287 KGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKI 366 (482)
Q Consensus 287 ~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~ 366 (482)
++++|+++.++++..-
T Consensus 178 ----------~~L~Gvvsl~~Ll~a~------------------------------------------------------ 193 (451)
T COG2239 178 ----------GKLLGVVSLRDLLTAE------------------------------------------------------ 193 (451)
T ss_pred ----------cceEEEeeHHHHhcCC------------------------------------------------------
Confidence 6899999999975220
Q ss_pred hccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC
Q psy15912 367 YKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN 446 (482)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~ 446 (482)
....++++|++.+.+|.+++..+++.++|+++++-.+||||+
T Consensus 194 --------------------------------------~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~ 235 (451)
T COG2239 194 --------------------------------------PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE 235 (451)
T ss_pred --------------------------------------cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECC
Confidence 112789999999999999999999999999999999999999
Q ss_pred CCeEEEEEeHHHhHHHHHhh
Q psy15912 447 NNHVVGMITRKDLARYRVWR 466 (482)
Q Consensus 447 ~g~lvGIITr~DLl~~~~~~ 466 (482)
+++++|+||-.|+++.....
T Consensus 236 ~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 236 DNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred CCceeeeeeHHHHHHHHHHH
Confidence 99999999999999875433
No 110
>PRK05277 chloride channel protein; Provisional
Probab=98.89 E-value=5.6e-09 Score=110.74 Aligned_cols=122 Identities=18% Similarity=0.131 Sum_probs=98.4
Q ss_pred ccccccCCCchhhhhhhcccc--cc--ccCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q psy15912 60 YGVSVSGGGMPEKYDFLSKDN--VW--KSNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG 133 (482)
Q Consensus 60 ~~~~~~g~G~~~~~~~l~~~~--~~--~~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~ 133 (482)
++-...|.|++.+..+++++. .| .+..|. +.+++|+|+|+|.+.|++.+|+++|..++..++.. . ..+..
T Consensus 65 ~~p~~~GsGi~~i~~~l~~~~~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~---~-~~~~~ 140 (438)
T PRK05277 65 FAPEAGGSGIPEIEGALEGLRPVRWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLR---S-DEARH 140 (438)
T ss_pred cCcccCCCCHHHHHHHHcCCCccchHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccC---C-HHHHH
Confidence 344456899999999999873 32 123565 99999999999999999999999999999875421 1 12466
Q ss_pred HHHHHHHHHHhhhhhchhHHHHHHHHH-hhCCc----hhhHHHHHHHHHHHHHhhhc
Q psy15912 134 KYALIGAAAQLGGVVRMTISLTIILIE-ATGNI----SFGLPLMLTLITAKWIGDFF 185 (482)
Q Consensus 134 ~~a~vG~aa~~~g~~~~p~s~~vi~~E-ltg~~----~~~~Pl~ia~~ia~~v~~~~ 185 (482)
.+..+||+|.++++.++|++++++.+| +++.+ ..+.|+++++++++.+.+.+
T Consensus 141 ~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 197 (438)
T PRK05277 141 TLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLF 197 (438)
T ss_pred HHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999 66532 34789999999999988875
No 111
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.87 E-value=1.7e-08 Score=89.47 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=33.3
Q ss_pred cccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC
Q psy15912 411 LFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN 448 (482)
Q Consensus 411 ~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g 448 (482)
+.|.++++++++++++.+|+++|.+.+.+++||+|+++
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 34567788999999999999999999999999998643
No 112
>KOG2550|consensus
Probab=98.83 E-value=6.8e-09 Score=104.59 Aligned_cols=125 Identities=19% Similarity=0.380 Sum_probs=105.4
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912 221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV 300 (482)
Q Consensus 221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv 300 (482)
.+++++.|..++.+++++...+++.++||.++... ..||+
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~----------------------------------------~~KLv 155 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKR----------------------------------------GSKLV 155 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcc----------------------------------------cceeE
Confidence 45778999999999999999999999999986521 36999
Q ss_pred EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912 301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS 380 (482)
Q Consensus 301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|+|+.+|+... .+
T Consensus 156 G~vtsrdi~f~-~~------------------------------------------------------------------ 168 (503)
T KOG2550|consen 156 GIITSRDIQFL-ED------------------------------------------------------------------ 168 (503)
T ss_pred EEEehhhhhhh-hc------------------------------------------------------------------
Confidence 99999997543 11
Q ss_pred hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912 381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460 (482)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl 460 (482)
....++++|++.+++.+.+.+++++-+++.+.+...+||||++|+++-+|+|+||.
T Consensus 169 ------------------------~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~ 224 (503)
T KOG2550|consen 169 ------------------------NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLM 224 (503)
T ss_pred ------------------------ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhh
Confidence 11268899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccccc
Q psy15912 461 RYRVWRHGGRMGLEEL 476 (482)
Q Consensus 461 ~~~~~~~~~~~~~~~~ 476 (482)
+.+-|...++..-++|
T Consensus 225 k~~~yPlask~~~kql 240 (503)
T KOG2550|consen 225 KNRDYPLASKDSTKQL 240 (503)
T ss_pred hhcCCCccccCcccce
Confidence 9887776665444444
No 113
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.78 E-value=1.9e-08 Score=100.73 Aligned_cols=126 Identities=17% Similarity=0.254 Sum_probs=106.1
Q ss_pred ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912 210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK 287 (482)
Q Consensus 210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
++.++|+|||.+ ++..+..+++.+++++.+.++.|+.+|+..++-
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~--------------------------------- 243 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL--------------------------------- 243 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh---------------------------------
Confidence 678999999986 789999999999999999999999999997762
Q ss_pred CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912 288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY 367 (482)
Q Consensus 288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~ 367 (482)
.+.+|++..+|+++++.+...
T Consensus 244 ---------DnIiGvlh~r~llr~l~e~~~-------------------------------------------------- 264 (423)
T COG4536 244 ---------DNIIGVLHVRDLLRLLNEKNE-------------------------------------------------- 264 (423)
T ss_pred ---------hHhhhhhhHHHHHHHhhccCc--------------------------------------------------
Confidence 369999999999998876410
Q ss_pred ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912 368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN 447 (482)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~ 447 (482)
+ ...++.... ..||.|++.+++.+-+..|++.+-+.-.|||+.
T Consensus 265 ----------~--------------------------~k~d~~~~a-~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY 307 (423)
T COG4536 265 ----------F--------------------------TKEDILRAA-DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY 307 (423)
T ss_pred ----------c--------------------------cHhHHHHHh-cCCeecCCCCcHHHHHHHHHHhcceEEEEEecc
Confidence 0 001232222 468999999999999999999999999999999
Q ss_pred CeEEEEEeHHHhHHHHH
Q psy15912 448 NHVVGMITRKDLARYRV 464 (482)
Q Consensus 448 g~lvGIITr~DLl~~~~ 464 (482)
|.+.|+||.+|+++-.+
T Consensus 308 G~i~GLVTLEDIlEEIV 324 (423)
T COG4536 308 GDIQGLVTLEDILEEIV 324 (423)
T ss_pred CcEEeeeeHHHHHHHHh
Confidence 99999999999998654
No 114
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.66 E-value=6.9e-08 Score=91.09 Aligned_cols=128 Identities=19% Similarity=0.359 Sum_probs=106.4
Q ss_pred ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912 210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK 287 (482)
Q Consensus 210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
...++|+|||.+ .+++++...++.+.+..+.++.|+.|||+.++.
T Consensus 64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edk--------------------------------- 110 (293)
T COG4535 64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK--------------------------------- 110 (293)
T ss_pred HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCc---------------------------------
Confidence 346899999976 789999999999999999999999999998863
Q ss_pred CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912 288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY 367 (482)
Q Consensus 288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~ 367 (482)
..+.|++..+||+..+....
T Consensus 111 ---------D~v~GIL~AKDLL~~~~~~~--------------------------------------------------- 130 (293)
T COG4535 111 ---------DHVEGILLAKDLLPFMRSDA--------------------------------------------------- 130 (293)
T ss_pred ---------hhhhhhhhHHHHHHHhcCCc---------------------------------------------------
Confidence 47999999999998754320
Q ss_pred ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912 368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN 447 (482)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~ 447 (482)
...+++++. ++...|++...+.+.++-||....+-..|+|+-
T Consensus 131 -------------------------------------~~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDEf 172 (293)
T COG4535 131 -------------------------------------EPFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEF 172 (293)
T ss_pred -------------------------------------ccccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEecc
Confidence 112455555 445679999999999999999999888999999
Q ss_pred CeEEEEEeHHHhHHHHHhhcc
Q psy15912 448 NHVVGMITRKDLARYRVWRHG 468 (482)
Q Consensus 448 g~lvGIITr~DLl~~~~~~~~ 468 (482)
|-+.|.||-.|++...+-...
T Consensus 173 GgVsGLVTIEDiLEqIVGdIE 193 (293)
T COG4535 173 GGVSGLVTIEDILEQIVGDIE 193 (293)
T ss_pred CCeeeeEEHHHHHHHHhcccc
Confidence 999999999999987654433
No 115
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.63 E-value=1.2e-07 Score=70.78 Aligned_cols=56 Identities=25% Similarity=0.543 Sum_probs=52.5
Q ss_pred hhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q psy15912 215 ARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKE 294 (482)
Q Consensus 215 a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (482)
|+|+|.+++.++++++++.++.+.|++++++.+||+|++
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~----------------------------------------- 39 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDED----------------------------------------- 39 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-----------------------------------------
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----------------------------------------
Confidence 689999999999999999999999999999999999886
Q ss_pred CCCeEEEEEeHHHHHHHHH
Q psy15912 295 SPGRLVGLILRSQLIILIK 313 (482)
Q Consensus 295 ~~g~lvGiIs~~dL~~~l~ 313 (482)
++++|+++.+||++++.
T Consensus 40 --~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 40 --GKLVGIISRSDLLKALL 56 (57)
T ss_dssp --SBEEEEEEHHHHHHHHH
T ss_pred --CEEEEEEEHHHHHhhhh
Confidence 79999999999998764
No 116
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.59 E-value=3.1e-07 Score=95.60 Aligned_cols=117 Identities=16% Similarity=0.140 Sum_probs=94.8
Q ss_pred cCCCchhhhhhhccc---ccccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q psy15912 65 SGGGMPEKYDFLSKD---NVWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 138 (482)
Q Consensus 65 ~g~G~~~~~~~l~~~---~~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~v 138 (482)
.|.|.+.+.+.+.++ ..|.. +.|+ +.+++++|+|+|.+.|+..+|+.+|..++..+. .. ..+...+..+
T Consensus 55 ~~~g~~~v~~~~~~~~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~----~~-~~~~r~l~~~ 129 (378)
T cd03682 55 SEKGNNLIIEEIHGPEEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFK----LP-EEDRRILLIA 129 (378)
T ss_pred cCCChHHHHHHHHccCCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhC----CC-HHHHHHHHHH
Confidence 467888888888754 33333 2444 999999999999999999999999999998552 21 1234568999
Q ss_pred HHHHHhhhhhchhHHHHHHHHHhhC----CchhhHHHHHHHHHHHHHhhhcC
Q psy15912 139 GAAAQLGGVVRMTISLTIILIEATG----NISFGLPLMLTLITAKWIGDFFT 186 (482)
Q Consensus 139 G~aa~~~g~~~~p~s~~vi~~Eltg----~~~~~~Pl~ia~~ia~~v~~~~~ 186 (482)
||+|.++++.++|++++++.+|.+. ++..++|.++++++++.+++.++
T Consensus 130 g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~~ 181 (378)
T cd03682 130 GIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHALG 181 (378)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999983 45778899999999999888664
No 117
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.52 E-value=1.4e-06 Score=90.10 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=50.0
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
.+.+.|.+...++++++++.+++..|.+.+.. +||+|++|+++|+||+.+++++..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 303 GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 35556677788899999999999999999998 999999999999999999998764
No 118
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.2e-06 Score=91.68 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=95.0
Q ss_pred ccchhhcccCCe---eEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912 212 NITARIVKSHPV---ICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG 288 (482)
Q Consensus 212 ~l~a~dvM~~~~---~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (482)
-+++.++|.++. +...+.....++++.|+........|+|++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 317 (400)
T PRK10070 273 VFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG----------------------------------- 317 (400)
T ss_pred ccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-----------------------------------
Confidence 467888886533 223466788999999999999999999986
Q ss_pred CCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhc
Q psy15912 289 DASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYK 368 (482)
Q Consensus 289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~ 368 (482)
++++|+++.+++.......
T Consensus 318 --------~~~~g~~~~~~~~~~~~~~----------------------------------------------------- 336 (400)
T PRK10070 318 --------NKFVGAVSIDSLKTALTQQ----------------------------------------------------- 336 (400)
T ss_pred --------CcEEEEEeHHHHHhhhhcC-----------------------------------------------------
Confidence 6899999999986543211
Q ss_pred cCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC
Q psy15912 369 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN 448 (482)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g 448 (482)
-.+.+.+.+...++++++++.+++..+.+.... +||||++|
T Consensus 337 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~ 377 (400)
T PRK10070 337 --------------------------------------QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQ 377 (400)
T ss_pred --------------------------------------CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCC
Confidence 035555667778899999999999999997766 99999999
Q ss_pred eEEEEEeHHHhHHHHH
Q psy15912 449 HVVGMITRKDLARYRV 464 (482)
Q Consensus 449 ~lvGIITr~DLl~~~~ 464 (482)
+++|+||+.++++...
T Consensus 378 ~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 378 QYVGIISKGMLLRALD 393 (400)
T ss_pred cEEEEEEHHHHHHHHH
Confidence 9999999999998764
No 119
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=98.46 E-value=8.9e-07 Score=93.94 Aligned_cols=122 Identities=21% Similarity=0.231 Sum_probs=101.7
Q ss_pred ccccccCCCchhhhhhhccc---ccccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q psy15912 60 YGVSVSGGGMPEKYDFLSKD---NVWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG 133 (482)
Q Consensus 60 ~~~~~~g~G~~~~~~~l~~~---~~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~ 133 (482)
+.-...|-|-+.+.+++++. ..|.. ..|+ +.+++++|+|.|...|+..+|+.+|..++..+.. . ..+..
T Consensus 85 ~~p~~~g~Gi~~~i~a~~~~~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~---~--~~~~r 159 (443)
T COG0038 85 FAPEARGSGIPQAIEALHGRKGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKL---S--REDRR 159 (443)
T ss_pred hCccccCCChhHHHHHHhcCCCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCC---C--HHHHH
Confidence 34446788999999999884 44444 3555 9999999999999999999999999999987742 1 13566
Q ss_pred HHHHHHHHHHhhhhhchhHHHHHHHHHhhC----CchhhHHHHHHHHHHHHHhhhcC
Q psy15912 134 KYALIGAAAQLGGVVRMTISLTIILIEATG----NISFGLPLMLTLITAKWIGDFFT 186 (482)
Q Consensus 134 ~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg----~~~~~~Pl~ia~~ia~~v~~~~~ 186 (482)
....+|+||-++++.++|++++++++|.-. ++..+.|+++++++++.+.+.++
T Consensus 160 ~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~~ 216 (443)
T COG0038 160 ILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLFG 216 (443)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHcC
Confidence 789999999999999999999999999876 44778999999999999998775
No 120
>KOG1764|consensus
Probab=98.45 E-value=1.8e-06 Score=89.60 Aligned_cols=127 Identities=19% Similarity=0.306 Sum_probs=96.1
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912 222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301 (482)
Q Consensus 222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG 301 (482)
.+.++.+++++.++++.|.+.+.+++||||+. |+.+|
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-------------------------------------------g~~v~ 274 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDEN-------------------------------------------GKKVG 274 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-------------------------------------------Cceec
Confidence 68899999999999999999999999999986 56699
Q ss_pred EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 381 (482)
Q Consensus 302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
.++..|+........+.. ....
T Consensus 275 ~~s~~Dv~~l~~~~~~~~----------------------------------------------------------~~~~ 296 (381)
T KOG1764|consen 275 NYSRFDVIHLAREGTYNN----------------------------------------------------------LDLS 296 (381)
T ss_pred ceehhhhhhhhhcCccCc----------------------------------------------------------cchh
Confidence 999999887665431100 0000
Q ss_pred hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
...+.. .....=....+++.++.++.+++..+...+.+++.|||++|+++|+||-.|++.
T Consensus 297 ~l~~~~--------------------~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~ 356 (381)
T KOG1764|consen 297 CLSEAL--------------------SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILS 356 (381)
T ss_pred HHHHHh--------------------hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHH
Confidence 000000 000111112588999999999999999999999999999999999999999999
Q ss_pred HHHhhccc
Q psy15912 462 YRVWRHGG 469 (482)
Q Consensus 462 ~~~~~~~~ 469 (482)
+......+
T Consensus 357 ~l~~~p~~ 364 (381)
T KOG1764|consen 357 YLVLTPSG 364 (381)
T ss_pred HHHhCccC
Confidence 97766443
No 121
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.37 E-value=2.5e-06 Score=89.16 Aligned_cols=116 Identities=14% Similarity=0.074 Sum_probs=92.9
Q ss_pred cCCCchhhhhhhcccc--cccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q psy15912 65 SGGGMPEKYDFLSKDN--VWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIG 139 (482)
Q Consensus 65 ~g~G~~~~~~~l~~~~--~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG 139 (482)
.|-|-+.+...++++- .|.- ..|. ..+|+|+|+|.|...|+..+|+++|..+++.++. +. .+...+..+|
T Consensus 63 ~g~gi~~v~~~~~~~~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~--~~---~~~r~li~~G 137 (388)
T cd01033 63 KGKKLVSIKQAVRGKKRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGL--TV---ADRRLLVACA 137 (388)
T ss_pred cCCCcccHHHHhcCCCCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCC--CH---HHHHHHHHHH
Confidence 4667778888887762 2222 2343 8899999999999999999999999999876532 11 2455688999
Q ss_pred HHHHhhhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHhhhc
Q psy15912 140 AAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFF 185 (482)
Q Consensus 140 ~aa~~~g~~~~p~s~~vi~~Eltg---~~~~~~Pl~ia~~ia~~v~~~~ 185 (482)
++|-++++.++|++.+++.+|... +...+.|.++++++++.+++.+
T Consensus 138 aaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 186 (388)
T cd01033 138 AGAGLAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLL 186 (388)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999874 5567789999999999988865
No 122
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=98.33 E-value=3.9e-07 Score=97.33 Aligned_cols=120 Identities=19% Similarity=0.185 Sum_probs=91.0
Q ss_pred cccCCCchhhhhhhccccc-----cc-cCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHH----------Hhc
Q psy15912 63 SVSGGGMPEKYDFLSKDNV-----WK-SNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ----------SIF 124 (482)
Q Consensus 63 ~~~g~G~~~~~~~l~~~~~-----~~-~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~----------~~~ 124 (482)
...|.|.+.+...++|... |. ++.|. +.+++|+|++.|.+.|+..+||.+|..+++... ..+
T Consensus 102 ~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~~ 181 (466)
T cd03685 102 TAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYF 181 (466)
T ss_pred ccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhhc
Confidence 3668999999999997532 12 23665 999999999999999999999999999997321 111
Q ss_pred CCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHhhh
Q psy15912 125 PEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDF 184 (482)
Q Consensus 125 ~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg---~~~~~~Pl~ia~~ia~~v~~~ 184 (482)
.+. .+...+..+||||.++++.++|++.+++.+|.++ +.+...+.+++++++..+++.
T Consensus 182 ~~~--~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~~ 242 (466)
T cd03685 182 RND--RDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNF 242 (466)
T ss_pred cCH--HHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 111 2345689999999999999999999999999876 334556666666666666554
No 123
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=98.33 E-value=7.9e-07 Score=93.70 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=97.6
Q ss_pred cccccCCCchhhhhhhcccc-----ccc-cCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhc--------
Q psy15912 61 GVSVSGGGMPEKYDFLSKDN-----VWK-SNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIF-------- 124 (482)
Q Consensus 61 ~~~~~g~G~~~~~~~l~~~~-----~~~-~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~-------- 124 (482)
.-...|.|-+.+..+++|.. .|. .+.|. +.+++|+|+|.|...|+..+||++|..+++......
T Consensus 59 ~p~a~GsGIp~v~~~l~g~~~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~ 138 (416)
T cd01036 59 APQAAGSGIPEVMAYLNGVHLPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQ 138 (416)
T ss_pred CcccCCCCHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhh
Confidence 44567889999999998742 222 23555 999999999999999999999999999998654321
Q ss_pred --CCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCc---hhhHHHHHHHHHHHHHhhhc
Q psy15912 125 --PEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNI---SFGLPLMLTLITAKWIGDFF 185 (482)
Q Consensus 125 --~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~---~~~~Pl~ia~~ia~~v~~~~ 185 (482)
.+ ..+...+..+|++|-++++.++|++.+++.+|.+... ..+.|.+++++++..+.+.+
T Consensus 139 ~~~~--~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 139 LFRN--PRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred hccC--HHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 11 1245668899999999999999999999999988632 46788999999888888765
No 124
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.29 E-value=5.2e-07 Score=87.78 Aligned_cols=59 Identities=20% Similarity=0.358 Sum_probs=54.9
Q ss_pred ccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 406 ~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
.++..++|+++.+++++++++.+|.+.+.+++++.+||+|++.|++||||+.||++.-.
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~ 302 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR 302 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC
Confidence 34788999999999999999999999999999999999999999999999999998533
No 125
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.29 E-value=1.3e-06 Score=74.76 Aligned_cols=55 Identities=24% Similarity=0.423 Sum_probs=51.8
Q ss_pred cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
.+++++|.+.+.++++++++.++.+.|.+.+.+.+||+|++|+++|+||.+|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 4689999999999999999999999999999999999998999999999999874
No 126
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=98.20 E-value=4.4e-06 Score=88.81 Aligned_cols=122 Identities=16% Similarity=0.058 Sum_probs=95.6
Q ss_pred ccccCCCchhhhhhhccccc-----c-ccCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q psy15912 62 VSVSGGGMPEKYDFLSKDNV-----W-KSNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG 133 (482)
Q Consensus 62 ~~~~g~G~~~~~~~l~~~~~-----~-~~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~ 133 (482)
-...|.|-+.+..+++|+.. | ..+.|. +.+++++|+|.|...|+..+||++|..+++.+..+-.+. .+..
T Consensus 51 p~a~GsGIp~v~~~l~g~~~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~~~--~~~r 128 (445)
T cd03684 51 PYAAGSGIPEIKTILSGFIIRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRRNE--AKRR 128 (445)
T ss_pred ccccCCCHHHHHHHHcCccccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhccCH--HHHH
Confidence 34557788888889987522 2 223554 999999999999999999999999999998765322121 2455
Q ss_pred HHHHHHHHHHhhhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHhhhc
Q psy15912 134 KYALIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFF 185 (482)
Q Consensus 134 ~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg---~~~~~~Pl~ia~~ia~~v~~~~ 185 (482)
.+..+|++|-++++.++|++.+++.+|... +...+.|.+++++++..+.+.+
T Consensus 129 ~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~ 183 (445)
T cd03684 129 EILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSL 183 (445)
T ss_pred HHHHHHHhhhhHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999998654 3456788999999998888754
No 127
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.13 E-value=4.9e-06 Score=87.01 Aligned_cols=117 Identities=21% Similarity=0.182 Sum_probs=92.1
Q ss_pred ccCCCchhhhhhhccccc--------cc-cCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCch
Q psy15912 64 VSGGGMPEKYDFLSKDNV--------WK-SNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDP 132 (482)
Q Consensus 64 ~~g~G~~~~~~~l~~~~~--------~~-~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~ 132 (482)
..|.|-+.+..+++++.. +. ...|. +.+|+++|+|.|...|+..+|+++|..+++.+.... ..+-
T Consensus 51 ~~gsGi~~v~~~~~~~~~~~~~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~----~~~~ 126 (390)
T cd01034 51 AAGSGIPQVIAALELPSAAARRRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWG----GLSE 126 (390)
T ss_pred CCCCCHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCc----hHHH
Confidence 457888899999986532 11 13555 999999999999999999999999999998654311 1345
Q ss_pred hHHHHHHHHHHhhhhhchhHHHHHHHHHhhCC---chhhHHHHHHHHHHHHHhhh
Q psy15912 133 GKYALIGAAAQLGGVVRMTISLTIILIEATGN---ISFGLPLMLTLITAKWIGDF 184 (482)
Q Consensus 133 ~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~---~~~~~Pl~ia~~ia~~v~~~ 184 (482)
..+..+|++|-++++.++|++.+++.+|.... .....|++++++++.+++..
T Consensus 127 r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~ 181 (390)
T cd01034 127 RGLILAGGAAGLAAAFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLA 181 (390)
T ss_pred HHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999988863 34667788888888777764
No 128
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=98.11 E-value=6.3e-06 Score=85.11 Aligned_cols=119 Identities=21% Similarity=0.197 Sum_probs=92.8
Q ss_pred cccCCCchhhhhhhcccccccc----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHH
Q psy15912 63 SVSGGGMPEKYDFLSKDNVWKS----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYA 136 (482)
Q Consensus 63 ~~~g~G~~~~~~~l~~~~~~~~----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a 136 (482)
...|.|-+.+...++++..... ..|. +.+|+++|+|-|...|+..+|+++|..+++.+.. +.. .....+.
T Consensus 16 ~~~g~Gi~~v~~~~~~~~~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~--~~~--~~~r~l~ 91 (355)
T PF00654_consen 16 EAAGSGIPEVKAALRGKSGRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRL--SRN--ETRRLLL 91 (355)
T ss_dssp GGSB-SHHHHHHHCTTSS---HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT----CH--HHHHHHH
T ss_pred ccCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhcc--cch--HHHhHHH
Confidence 3456777899999988754322 3554 9999999999999999999999999999977432 110 1134589
Q ss_pred HHHHHHHhhhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHhhhc
Q psy15912 137 LIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFF 185 (482)
Q Consensus 137 ~vG~aa~~~g~~~~p~s~~vi~~Eltg---~~~~~~Pl~ia~~ia~~v~~~~ 185 (482)
.+|++|-++++.++|++.+++.+|... +...+.|.++++++++.+.+.+
T Consensus 92 ~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 143 (355)
T PF00654_consen 92 AAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLL 143 (355)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999976 6789999999999999999976
No 129
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.11 E-value=1.5e-05 Score=84.12 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=91.3
Q ss_pred cCCCchhhhhhhcc--cccccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q psy15912 65 SGGGMPEKYDFLSK--DNVWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIG 139 (482)
Q Consensus 65 ~g~G~~~~~~~l~~--~~~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG 139 (482)
.+.|-+.+.++.++ .+.+.. ..|. +.+++|+|+|.|...|+..+||++|..+++.++ +. .+...+..+|
T Consensus 78 ~~~g~~~vi~av~~~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~---~~---~~~r~li~~G 151 (418)
T PRK01610 78 RPHAPTDYMEALQTDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFT---PR---QEWKLWIACG 151 (418)
T ss_pred cCCCcHHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhC---Ch---HHHHHHHHHH
Confidence 34566666666654 334433 2444 999999999999999999999999999998764 11 3556789999
Q ss_pred HHHHhhhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHhhhc
Q psy15912 140 AAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFF 185 (482)
Q Consensus 140 ~aa~~~g~~~~p~s~~vi~~Eltg---~~~~~~Pl~ia~~ia~~v~~~~ 185 (482)
++|-++++.++|++.+++.+|... .+..+.|+++++++++.+++.+
T Consensus 152 aaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~ 200 (418)
T PRK01610 152 AAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLL 200 (418)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999753 3456788999999999888865
No 130
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.09 E-value=4.6e-06 Score=79.92 Aligned_cols=58 Identities=29% Similarity=0.458 Sum_probs=54.0
Q ss_pred ccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 406 ~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
..++.++|+++++++.+++++.++.++|.+.++|..||+|++ +++|++|.+|+.++..
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia 228 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIA 228 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHH
Confidence 347999999999999999999999999999999999999855 9999999999998865
No 131
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.08 E-value=1.4e-06 Score=95.18 Aligned_cols=162 Identities=12% Similarity=0.245 Sum_probs=107.7
Q ss_pred HHHHcCCCCCCCCC------CCCccccchhhccc-CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccc
Q psy15912 193 HIQLSGIPLLAWDP------PPLSSNITARIVKS-HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQ 265 (482)
Q Consensus 193 ~L~~~g~p~l~~~~------~~~l~~l~a~dvM~-~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~ 265 (482)
..+.++.|.+.... .......+++++|+ +++.++++++++.++.+.|.+++++.+||||++
T Consensus 220 la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~------------ 287 (546)
T PRK14869 220 LAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED------------ 287 (546)
T ss_pred HHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCC------------
Confidence 34556776664321 12234678999999 899999999999999999999999999999976
Q ss_pred cCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCC
Q psy15912 266 SSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWS 345 (482)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 345 (482)
|+++|+++++|+......+...-........... ..
T Consensus 288 -------------------------------g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~-------------~~ 323 (546)
T PRK14869 288 -------------------------------GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEG-------------IE 323 (546)
T ss_pred -------------------------------CCEEEEEEHHHhhccccCceEEEcCccccccccc-------------hh
Confidence 6999999999998754332100000000000000 00
Q ss_pred CCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceee---eC
Q psy15912 346 PGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSV---QD 422 (482)
Q Consensus 346 ~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V---~~ 422 (482)
.....+ .-+.-++.++|++.|+.+ +.
T Consensus 324 ~~~i~~---------------------------------------------------iiDHH~~~~~~~~~pi~~~~~~~ 352 (546)
T PRK14869 324 EAEILE---------------------------------------------------IIDHHRLGDIQTSNPIFFRNEPV 352 (546)
T ss_pred hceEEE---------------------------------------------------EecCCccCCCCCCCCcEEEeeee
Confidence 000000 001113556777777665 44
Q ss_pred CCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 423 STSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 423 ~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
..+.+.++++|++.+....|++. ...+.||+|.++.+++
T Consensus 353 gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 353 GSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKS 391 (546)
T ss_pred eeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccC
Confidence 67788999999999999888885 4579999999998876
No 132
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.93 E-value=2.7e-05 Score=66.60 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=44.7
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
++.++++++++.++.+.|.+.+.+++||+|++|+++|++|++|++.+.
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~ 49 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLA 49 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHH
Confidence 567899999999999999999999999999899999999999999764
No 133
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.90 E-value=2.7e-05 Score=64.77 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=42.9
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARY 462 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~ 462 (482)
.++++++++++.++.+.|.+.+.+++||+|++ |+++|+||++|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~ 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh
Confidence 35789999999999999999999999999975 899999999999864
No 134
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=97.89 E-value=2.1e-05 Score=83.26 Aligned_cols=124 Identities=13% Similarity=-0.002 Sum_probs=93.3
Q ss_pred cccccCCCchhhhhhhcccccc-----cc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcC-CCCCCc
Q psy15912 61 GVSVSGGGMPEKYDFLSKDNVW-----KS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFP-EATWID 131 (482)
Q Consensus 61 ~~~~~g~G~~~~~~~l~~~~~~-----~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~-~~~~~~ 131 (482)
.-...|.|-+.+...++|.... .. ..|. +.+++|+|+|-|...|+..+||++|..+++....... .....+
T Consensus 67 ~p~a~GsGIp~v~~~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~~~~~~~ 146 (426)
T cd03683 67 SPQAVGSGIPEMKTILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGIYENESR 146 (426)
T ss_pred CCccCCCCHHHHHHHHcCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccCHHH
Confidence 4456788888888889875221 11 2454 9999999999999999999999999999986642110 000012
Q ss_pred hhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCC---chhhHHHHHHHHHHHHHhhh
Q psy15912 132 PGKYALIGAAAQLGGVVRMTISLTIILIEATGN---ISFGLPLMLTLITAKWIGDF 184 (482)
Q Consensus 132 ~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~---~~~~~Pl~ia~~ia~~v~~~ 184 (482)
...+..+|+||-++++.++|++.+++.+|.... ...+.|.+++++++..+.+.
T Consensus 147 rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~ 202 (426)
T cd03683 147 RMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRL 202 (426)
T ss_pred HHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 335789999999999999999999999998753 35667888888888877664
No 135
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.88 E-value=1.6e-05 Score=84.75 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=54.4
Q ss_pred cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912 213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR 292 (482)
Q Consensus 213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (482)
.+++++|.+++.++++++++.++.+.|+++++..+||||++
T Consensus 195 ~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~--------------------------------------- 235 (449)
T TIGR00400 195 EILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE--------------------------------------- 235 (449)
T ss_pred CcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC---------------------------------------
Confidence 46899999999999999999999999999999999999976
Q ss_pred CCCCCeEEEEEeHHHHHHHHHhh
Q psy15912 293 KESPGRLVGLILRSQLIILIKHK 315 (482)
Q Consensus 293 ~~~~g~lvGiIs~~dL~~~l~~~ 315 (482)
|+++|+|+.+|+.+.+.+.
T Consensus 236 ----g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 236 ----GRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred ----CeEEEEEEHHHHHHHHHhh
Confidence 6899999999998877553
No 136
>PRK03655 putative ion channel protein; Provisional
Probab=97.87 E-value=0.00014 Score=76.59 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=68.2
Q ss_pred ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHh-hCCchh
Q psy15912 89 RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEA-TGNISF 167 (482)
Q Consensus 89 ~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~El-tg~~~~ 167 (482)
+.+++++|+|-|...|+..+||.+|..+++.+. +. .+......+|+||-++++.++|++.+++.+|. .+++..
T Consensus 107 ~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~---~~---~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~ 180 (414)
T PRK03655 107 LILGLAGGVSLGPEHPIMTVNIALAVAIGARLL---PR---VNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEV 180 (414)
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhc---cC---CChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhH
Confidence 788899999999999999999999999997652 22 13334677899999999999999999999996 454442
Q ss_pred ------hHHHHHHHHHHHHHhhhc
Q psy15912 168 ------GLPLMLTLITAKWIGDFF 185 (482)
Q Consensus 168 ------~~Pl~ia~~ia~~v~~~~ 185 (482)
+.|+ ++.+++..++..+
T Consensus 181 ~~~~~~~~~v-~aa~~a~~v~~~~ 203 (414)
T PRK03655 181 PLWDRLFAPL-MAAAAGALTTGLF 203 (414)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHh
Confidence 3344 3444466665544
No 137
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.85 E-value=4.5e-05 Score=53.06 Aligned_cols=46 Identities=30% Similarity=0.611 Sum_probs=42.4
Q ss_pred ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 417 p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
+.++.+++++.++.+.|.+.+.+++||+|++++++|+++.+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 5678999999999999999999999999988999999999999764
No 138
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.85 E-value=6.3e-05 Score=64.30 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=38.8
Q ss_pred cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCC
Q psy15912 213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 253 (482)
Q Consensus 213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~ 253 (482)
.+++|+|.+++.++.+++++.++++.|.+.++..+||+|++
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~ 98 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDD 98 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC
Confidence 78999999999999999999999999999999999999975
No 139
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.85 E-value=1.6e-05 Score=70.95 Aligned_cols=60 Identities=27% Similarity=0.426 Sum_probs=54.5
Q ss_pred ccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhh
Q psy15912 406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR 466 (482)
Q Consensus 406 ~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~ 466 (482)
.+..+.+|+++.+.+++++++.++.++|+..|+.++||++ +|+++|-||..|+.+...+.
T Consensus 64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~-~~k~VGsItE~~iv~~~le~ 123 (187)
T COG3620 64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE-EDKVVGSITENDIVRALLEG 123 (187)
T ss_pred eEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee-CCeeeeeecHHHHHHHHhcc
Confidence 4577899999999999999999999999999999999997 48999999999999876433
No 140
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.82 E-value=3e-05 Score=78.84 Aligned_cols=57 Identities=25% Similarity=0.283 Sum_probs=53.3
Q ss_pred cccccccccC--ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 407 VKLNLFMNTS--PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 407 i~v~~im~~~--p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
.+|+++|+++ +.++++++++.++.+.|.+.+..++||||++|+++|+||.+|+.+..
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~ 255 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWL 255 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHH
Confidence 5899999998 99999999999999999999999999999999999999999998754
No 141
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.81 E-value=7.1e-05 Score=66.17 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=45.5
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
++.++++++++.++.+.|.+.+...+||+|++|+++|+||.+|++++..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999998754
No 142
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.79 E-value=5.8e-05 Score=62.38 Aligned_cols=47 Identities=21% Similarity=0.425 Sum_probs=43.6
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
+++++++++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence 56789999999999999999999999999988999999999999863
No 143
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.76 E-value=4.3e-05 Score=77.85 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=52.7
Q ss_pred cccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 406 TVKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 406 ~i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
.+.++++|++ +++++++++++.++.+.|.+.+.+.+||+|++|+++|+||.+|+.+..
T Consensus 201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~ 260 (326)
T PRK10892 201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVF 260 (326)
T ss_pred cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHH
Confidence 4579999997 899999999999999999999998889899899999999999998643
No 144
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.72 E-value=0.00012 Score=63.50 Aligned_cols=50 Identities=18% Similarity=0.404 Sum_probs=45.6
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
+++.++++++++.++.+.|++.+.+++||+|++++++|+||.+|+++...
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~ 51 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLS 51 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 46788999999999999999999999999998899999999999997543
No 145
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.70 E-value=0.00012 Score=61.41 Aligned_cols=48 Identities=27% Similarity=0.427 Sum_probs=44.3
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
++.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~ 49 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAV 49 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHH
Confidence 567899999999999999999999999999889999999999998764
No 146
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.67 E-value=0.00012 Score=60.79 Aligned_cols=48 Identities=29% Similarity=0.527 Sum_probs=44.0
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
+++++++++.++.++.+.|.+.+.+++||+|++|+++|++|++|+++.
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~ 48 (106)
T cd04582 1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARA 48 (106)
T ss_pred CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHh
Confidence 357789999999999999999999999999988999999999999874
No 147
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.67 E-value=0.0001 Score=61.79 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=44.7
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
++++++++++++.++.+.|++.+.+++||+|++|+++|+|+++|+.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~ 49 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREIL 49 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHH
Confidence 3567899999999999999999999999999889999999999998754
No 148
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.66 E-value=0.00014 Score=60.80 Aligned_cols=49 Identities=20% Similarity=0.404 Sum_probs=45.1
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
++++++++++++.++.+.|.+.+..++||+|++|+++|++|.+|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 50 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAV 50 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHH
Confidence 5678899999999999999999999999999889999999999998653
No 149
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.66 E-value=6.4e-05 Score=74.23 Aligned_cols=58 Identities=28% Similarity=0.328 Sum_probs=53.5
Q ss_pred ccccccccccC-ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 406 TVKLNLFMNTS-PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 406 ~i~v~~im~~~-p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
.++++++|+++ +.++++++++.++.+.|.+.+.+.+||+|++|+++|+||.+|+.+..
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHH
Confidence 35899999998 99999999999999999999999999999899999999999998753
No 150
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.63 E-value=0.00011 Score=61.96 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=38.0
Q ss_pred cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCC
Q psy15912 213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 253 (482)
Q Consensus 213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~ 253 (482)
.++.++|..++.++.+++++.++++.|.+++.+.+||+|++
T Consensus 56 ~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~ 96 (111)
T cd04603 56 LKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE 96 (111)
T ss_pred cChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC
Confidence 46889999999999999999999999999999999999975
No 151
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.60 E-value=0.00017 Score=61.66 Aligned_cols=50 Identities=28% Similarity=0.494 Sum_probs=45.6
Q ss_pred ccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 414 NTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 414 ~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
++++.++++++++.++.+.|.+.+.+++||+|++|+++|+|+++|+++..
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~ 50 (124)
T cd04600 1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHA 50 (124)
T ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhh
Confidence 35788999999999999999999999999999889999999999998754
No 152
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.59 E-value=0.00022 Score=59.62 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=44.6
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
++.++++++++.++.+.|.+.+..++||+|++++++|+++.+|+++...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~ 50 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVA 50 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHh
Confidence 4677899999999999999999999999998899999999999997654
No 153
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.56 E-value=0.00016 Score=63.67 Aligned_cols=49 Identities=33% Similarity=0.403 Sum_probs=45.0
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
+++++++++++.++.+.|.+.+.+.+||+|++|+++|+|+++|++++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~ 50 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEF 50 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhh
Confidence 4678999999999999999999999999999899999999999998654
No 154
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.56 E-value=0.00019 Score=60.79 Aligned_cols=42 Identities=21% Similarity=0.387 Sum_probs=38.9
Q ss_pred ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCC
Q psy15912 212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 253 (482)
Q Consensus 212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~ 253 (482)
..+++++|.+++.++.+++++.++++.|.+++.+.+||+|++
T Consensus 58 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 99 (114)
T cd04619 58 TAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN 99 (114)
T ss_pred cCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCC
Confidence 457889999999999999999999999999999999999975
No 155
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.54 E-value=0.00025 Score=60.49 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=44.9
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+||.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 4678999999999999999999999999998899999999999988654
No 156
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.53 E-value=0.00025 Score=59.93 Aligned_cols=50 Identities=26% Similarity=0.278 Sum_probs=45.1
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
+++.++++++++.++.+.|.+.+...+||+|++|+++|+++++|+.+...
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 35678999999999999999999999999998899999999999987543
No 157
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.53 E-value=0.00024 Score=59.93 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=44.5
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
.++++++++++.++.+.|++.+.+.+||+|++|+++|+|+.+|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence 3578999999999999999999999999998899999999999987643
No 158
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.52 E-value=0.00019 Score=62.77 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=45.0
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
+++.++.+++++.++.+.|.+.+.+++||+|++++++|+|+++|+++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~ 50 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRA 50 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHh
Confidence 5678899999999999999999999999999889999999999998754
No 159
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.49 E-value=0.0003 Score=58.97 Aligned_cols=49 Identities=12% Similarity=0.274 Sum_probs=44.3
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++.+|++++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~ 50 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDL 50 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHh
Confidence 4577999999999999999999999999998899999999999987643
No 160
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.48 E-value=0.00019 Score=61.91 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=44.8
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
.+.++++++++.++.+.|.+.+...+||+|++|+++|+|+.+|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~ 50 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL 50 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhc
Confidence 4678999999999999999999999999998899999999999998653
No 161
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.48 E-value=0.00034 Score=58.12 Aligned_cols=49 Identities=20% Similarity=0.476 Sum_probs=44.4
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
+++.+++++.++.++.+.|.+.+.+++||+|++|+++|+|+.+|+.+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY 50 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence 4577899999999999999999999999999889999999999998753
No 162
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.48 E-value=0.0002 Score=76.31 Aligned_cols=59 Identities=17% Similarity=0.350 Sum_probs=54.2
Q ss_pred ccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 406 ~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
.++++++|++++.++.+++++.++.+.|++.+.+.+||+|++++++|+||.+|+++...
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF 392 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 35799999999999999999999999999999999999998899999999999997543
No 163
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.47 E-value=0.00027 Score=59.64 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=43.1
Q ss_pred CceeeeCCCCHHHHHHHHHHcC-CCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALG-LRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~-lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
+..++++++++.++.+.|.+.+ .+.+||+|++|+++|+|+.+|+++...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH
Confidence 4567899999999999997775 889999998899999999999997653
No 164
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.46 E-value=0.00031 Score=60.69 Aligned_cols=46 Identities=28% Similarity=0.541 Sum_probs=42.9
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
++.++.+++++.++.+.|.+.+.+++||+|++|+++|+|+.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 4678999999999999999999999999998899999999999985
No 165
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.46 E-value=0.00054 Score=73.77 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=52.0
Q ss_pred cchhhccc-CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912 213 ITARIVKS-HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 291 (482)
Q Consensus 213 l~a~dvM~-~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (482)
.+++|+|. ++++++.+++++.++++.|.+++.+.+||+|++
T Consensus 147 ~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-------------------------------------- 188 (486)
T PRK05567 147 QPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-------------------------------------- 188 (486)
T ss_pred CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------------------------------------
Confidence 46889998 789999999999999999999999999999986
Q ss_pred CCCCCCeEEEEEeHHHHHHHH
Q psy15912 292 RKESPGRLVGLILRSQLIILI 312 (482)
Q Consensus 292 ~~~~~g~lvGiIs~~dL~~~l 312 (482)
++++|+|+.+|+++.+
T Consensus 189 -----g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 189 -----GRLKGLITVKDIEKAE 204 (486)
T ss_pred -----CcEEEEEEhHHhhhhh
Confidence 6899999999998765
No 166
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.46 E-value=0.00036 Score=60.25 Aligned_cols=47 Identities=23% Similarity=0.588 Sum_probs=43.4
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
++.++++++++.++.++|.+.+.+.+||+|++|+++|+||+.|+.+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~ 48 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDF 48 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHH
Confidence 45678999999999999999999999999988999999999999865
No 167
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.45 E-value=0.00042 Score=58.36 Aligned_cols=48 Identities=25% Similarity=0.377 Sum_probs=43.9
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
.+.++++++++.++.+.|.+.+.+.++|+|++|+++|++|.+|+++..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRAL 50 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHH
Confidence 467899999999999999999999999999899999999999998654
No 168
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.45 E-value=0.00029 Score=60.28 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=44.7
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYRV 464 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~~ 464 (482)
+++.++++++++.++.++|.+.+.+.+||+|++ |+++|+|+++|++++..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~ 51 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLG 51 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhh
Confidence 356789999999999999999999999999987 99999999999987543
No 169
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.44 E-value=0.00036 Score=58.90 Aligned_cols=48 Identities=15% Similarity=0.378 Sum_probs=43.9
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~ 463 (482)
++.++++++++.++.+.|++.+.+++||+|++ ++++|++|.+|++++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~ 50 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKV 50 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHH
Confidence 56789999999999999999999999999987 8999999999998754
No 170
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.44 E-value=0.00037 Score=58.54 Aligned_cols=47 Identities=32% Similarity=0.483 Sum_probs=43.7
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
+|+++.+++++.++.+.|.+.+.+++||+|++|+++|++|++|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~ 48 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSY 48 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHh
Confidence 47889999999999999999999999999988999999999999874
No 171
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.42 E-value=0.00028 Score=60.08 Aligned_cols=48 Identities=25% Similarity=0.529 Sum_probs=43.9
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
+++.++++++++.++.+.|.+.+.+++||+|++|+++|+++++|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA 48 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence 356789999999999999999999999999988999999999999864
No 172
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.42 E-value=0.00038 Score=58.07 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=44.2
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
++++++++++++.++.+.|.+.+.+++||+|+ |+++|+++++|+.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~ 49 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPA 49 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHh
Confidence 46788999999999999999999999999987 99999999999987543
No 173
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.41 E-value=0.00035 Score=58.63 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=44.4
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
++++++++++++.++.+.|.+.+.+.+||+|++++++|+|+.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~ 49 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQL 49 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHh
Confidence 3567899999999999999999999999999899999999999998754
No 174
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.40 E-value=0.00029 Score=61.30 Aligned_cols=49 Identities=27% Similarity=0.396 Sum_probs=44.8
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
++.++++++++.++.+.|.+.+.+++||+|++|+++|+|+++|+++...
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~ 50 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIY 50 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHh
Confidence 5678999999999999999999999999998899999999999987643
No 175
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.00037 Score=59.37 Aligned_cols=48 Identities=31% Similarity=0.543 Sum_probs=44.3
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++++|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~ 49 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAA 49 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHh
Confidence 467899999999999999999999999999889999999999998764
No 176
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.00036 Score=58.35 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=43.7
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
++.++.+++++.++.+.|.+.+.+++||+|++|+++|+|+.+|+.+..
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~ 49 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRAL 49 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHH
Confidence 466789999999999999999999999999889999999999998754
No 177
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.38 E-value=0.00032 Score=75.04 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=51.6
Q ss_pred cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
+++.++|.++|.++++++++.++.+.|.+.+.+.+||+|++++++|+||.+|+..
T Consensus 89 VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~ 143 (479)
T PRK07807 89 VKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAG 143 (479)
T ss_pred cccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhc
Confidence 4778899999999999999999999999999999999999999999999999854
No 178
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.37 E-value=0.00042 Score=59.43 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=43.5
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~ 463 (482)
++.++++++++.++.+.|.+.+.+++||+|++ |+++|+|+.+|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~ 50 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFL 50 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHH
Confidence 45678999999999999999999999999987 9999999999998754
No 179
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.36 E-value=0.00066 Score=55.90 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=45.1
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHh
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVW 465 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~ 465 (482)
++.++++++++.++.+.|.+.+.+++||+|++++++|+++++|+++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~ 51 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAE 51 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHh
Confidence 46778999999999999999999999999988999999999999987643
No 180
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.35 E-value=0.00053 Score=58.21 Aligned_cols=48 Identities=25% Similarity=0.524 Sum_probs=44.0
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
++.++++++++.++.+.|.+.+.+++||+|++|+++|+|+.+|+.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence 467899999999999999999999999999889999999999998754
No 181
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.35 E-value=0.00064 Score=56.74 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=43.6
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
++++++++++++.++.+.|.+.+.+.+||+|+ ++++|+++++|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~ 48 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAI 48 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHH
Confidence 35678999999999999999999999999987 9999999999999764
No 182
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.33 E-value=0.0005 Score=57.44 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=43.3
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
++.+++++++++++.+.|.+.+.+.+||+|++|+++|+|+++|++..
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK 49 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc
Confidence 56789999999999999999999999999989999999999999853
No 183
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.33 E-value=0.00069 Score=56.62 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=44.7
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYRV 464 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~~ 464 (482)
+..++++++++.++.+.|.+.+...+||+|++ |+++|++|.+|+++...
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~ 51 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA 51 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH
Confidence 46789999999999999999999999999988 99999999999998653
No 184
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.31 E-value=0.00073 Score=56.48 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=43.4
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
+++.++++++++.++.+.|.+.+.+++||+|+ |+++|+|+++|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~ 49 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKAL 49 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHH
Confidence 45678999999999999999999999999987 9999999999998754
No 185
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.31 E-value=0.00059 Score=56.67 Aligned_cols=47 Identities=26% Similarity=0.402 Sum_probs=43.1
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
++.++++++++.++.+.|.+.+.+++||+|+ |+++|++|++|+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~ 48 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDAL 48 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHH
Confidence 4678999999999999999999999999987 9999999999999864
No 186
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.29 E-value=0.00031 Score=74.44 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=56.1
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhhc
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRH 467 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~~ 467 (482)
.+.+.++.+|++|++.+|+.+|...|.+.|...+.|+|++++..||||++|+.+....+.
T Consensus 150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g 209 (610)
T COG2905 150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG 209 (610)
T ss_pred HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC
Confidence 688899999999999999999999999999999999999999999999999999877643
No 187
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.28 E-value=0.00066 Score=57.45 Aligned_cols=48 Identities=31% Similarity=0.518 Sum_probs=43.6
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
++.++.+++++.++.+.|.+.+..++||+|+ |+++|+++++|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~ 49 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASP 49 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhh
Confidence 5678999999999999999999999999987 99999999999987643
No 188
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.27 E-value=0.00078 Score=57.40 Aligned_cols=47 Identities=26% Similarity=0.450 Sum_probs=42.9
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
+++++++++++.++.+.|.+.+..++||+|+ |+++|++|++|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~ 48 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAI 48 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHH
Confidence 5678999999999999999999999999986 9999999999998753
No 189
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.26 E-value=0.00096 Score=55.87 Aligned_cols=47 Identities=32% Similarity=0.481 Sum_probs=42.4
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
+++++++++++.++.+.|.+.+.+.+||+|+ |+++|+||.+|++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~ 48 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRV 48 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHH
Confidence 5678999999999999999999999999987 9999999999998643
No 190
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.25 E-value=0.00093 Score=55.66 Aligned_cols=48 Identities=23% Similarity=0.395 Sum_probs=43.0
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
+.+++++++++.++.+.|.+.+.+.+||+|+ ++++|+++++|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~ 49 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLA 49 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHh
Confidence 4567899999999999999999999999986 89999999999997654
No 191
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.23 E-value=0.00066 Score=71.49 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=51.8
Q ss_pred ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHH
Q psy15912 407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYR 463 (482)
Q Consensus 407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~ 463 (482)
..++++|++ ++++++.+++++++.+.+.+.+++++||.+++ ++++|||+.+|++.+.
T Consensus 191 ~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~ 250 (408)
T TIGR03520 191 TDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHL 250 (408)
T ss_pred CEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHh
Confidence 479999997 68999999999999999999999999999764 6899999999999753
No 192
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.20 E-value=0.00095 Score=55.87 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=42.1
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
+++.++++++++.++.+.|.+.+.+.+||+|+ |+++|+++++|++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~ 46 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVV 46 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHH
Confidence 35778999999999999999999999999987 99999999999873
No 193
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.20 E-value=0.001 Score=55.51 Aligned_cols=47 Identities=21% Similarity=0.461 Sum_probs=42.8
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+|+.+|+++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~ 47 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNR 47 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHH
Confidence 35778999999999999999999999999986 999999999999874
No 194
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.19 E-value=0.00074 Score=56.91 Aligned_cols=42 Identities=14% Similarity=0.361 Sum_probs=36.9
Q ss_pred ccchhhcccCCeeEecCC--CCHHHHHHHHHhCCCCeeeEecCC
Q psy15912 212 NITARIVKSHPVICLRPL--ETVGNIIDVLKATSHNGFPIVDVE 253 (482)
Q Consensus 212 ~l~a~dvM~~~~~~l~~~--~~i~~~~~~l~~~~~~~fPVVd~~ 253 (482)
..++.++|.+++.++.++ +++.++++.|.++....+||+|++
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~ 100 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ 100 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCC
Confidence 356889999888899887 689999999999999999999875
No 195
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.18 E-value=0.00088 Score=56.03 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=50.9
Q ss_pred ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912 212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 291 (482)
Q Consensus 212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (482)
..+++++|.+++.++.+++++.++++.+.+.+...+||+|++
T Consensus 52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------------------------------- 93 (109)
T cd04606 52 DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEE-------------------------------------- 93 (109)
T ss_pred cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCC--------------------------------------
Confidence 356889998899999999999999999999998999999875
Q ss_pred CCCCCCeEEEEEeHHHHHHH
Q psy15912 292 RKESPGRLVGLILRSQLIIL 311 (482)
Q Consensus 292 ~~~~~g~lvGiIs~~dL~~~ 311 (482)
++++|+|+.+|++++
T Consensus 94 -----~~~~Gvit~~dll~~ 108 (109)
T cd04606 94 -----GRLVGIITVDDVIDV 108 (109)
T ss_pred -----CcEEEEEEhHHhhhh
Confidence 689999999998764
No 196
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.18 E-value=0.00077 Score=59.81 Aligned_cols=49 Identities=16% Similarity=0.419 Sum_probs=44.2
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
++++++++++++.++.+.|.+.+...+||+|+ ++++|++|++|+++...
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~ 49 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLV 49 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHH
Confidence 35788999999999999999999999999987 99999999999987643
No 197
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.17 E-value=0.0013 Score=55.08 Aligned_cols=47 Identities=30% Similarity=0.461 Sum_probs=42.9
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
.++++++++++.++.+.|.+.+.+.++|+|+ |+++|+++.+|+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~ 48 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAV 48 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHH
Confidence 5678999999999999999999999999987 8999999999998764
No 198
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.17 E-value=0.00085 Score=67.47 Aligned_cols=57 Identities=14% Similarity=0.313 Sum_probs=52.0
Q ss_pred ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHH
Q psy15912 407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYR 463 (482)
Q Consensus 407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~ 463 (482)
..++++|++ ...+++++++++++.+.+++.+..++||+|++ ++++|+|+.+|++.+.
T Consensus 67 ~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM 126 (292)
T ss_pred CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh
Confidence 379999998 68899999999999999999999999999876 7999999999999654
No 199
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.14 E-value=0.0011 Score=54.60 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=42.0
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
+++++++++++.++.+.|.+.+.+.+||+| +++++|+++.+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~ 47 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA 47 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc
Confidence 567899999999999999999999999998 6899999999999864
No 200
>KOG1764|consensus
Probab=97.13 E-value=0.0022 Score=66.83 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=44.7
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
+...+.+++++.+|+++|+..++..+||||++|+.+|++++.|+....
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~ 285 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLA 285 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhh
Confidence 577899999999999999999999999999999999999999998653
No 201
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.11 E-value=0.0011 Score=56.11 Aligned_cols=47 Identities=26% Similarity=0.360 Sum_probs=42.0
Q ss_pred CceeeeCCCCHHHHHHHHHHcC-CCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALG-LRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~-lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
+++++++++++.++.+.|++.+ ...+||+|+ |+++|+|+.+|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~ 49 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELL 49 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHH
Confidence 4567899999999999998887 889999998 9999999999998653
No 202
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.10 E-value=0.0011 Score=55.41 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=36.8
Q ss_pred cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecC
Q psy15912 213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV 252 (482)
Q Consensus 213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~ 252 (482)
.++.++|.+++.++.+++++.++++.|.+++...+||+|+
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~ 97 (112)
T cd04625 58 TTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG 97 (112)
T ss_pred CCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC
Confidence 4689999998899999999999999999999999999984
No 203
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.09 E-value=0.0011 Score=55.51 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=37.6
Q ss_pred cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCC
Q psy15912 213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 253 (482)
Q Consensus 213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~ 253 (482)
.++.++|.+++.++++++++.++++.+..+....+||++++
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 99 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDN 99 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC
Confidence 46899999999999999999999999999988999999865
No 204
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.08 E-value=0.001 Score=70.98 Aligned_cols=55 Identities=22% Similarity=0.442 Sum_probs=50.7
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC---CeEEEEEeHHHhHHH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN---NHVVGMITRKDLARY 462 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~---g~lvGIITr~DLl~~ 462 (482)
.+++.|.+++.++++++++.++.++|.+.+.+.+||+|++ ++++|+||++|++..
T Consensus 81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~ 138 (450)
T TIGR01302 81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV 138 (450)
T ss_pred cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh
Confidence 5677888999999999999999999999999999999987 799999999999753
No 205
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.07 E-value=0.0015 Score=54.06 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=37.4
Q ss_pred cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCC
Q psy15912 213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 253 (482)
Q Consensus 213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~ 253 (482)
..++++|.+++.++.+++++.++++.|.+++.+.+||++++
T Consensus 52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 92 (107)
T cd04610 52 ETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDEN 92 (107)
T ss_pred ccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCC
Confidence 35889999999999999999999999999998999999975
No 206
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.07 E-value=0.0015 Score=55.56 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=42.7
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
+++++.+++++.++.+.|.+.+.+.+||+|+ |+++|++|++|+.+..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~ 48 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADAL 48 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhh
Confidence 5678999999999999999999999999986 9999999999998753
No 207
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.05 E-value=0.0022 Score=53.85 Aligned_cols=55 Identities=27% Similarity=0.397 Sum_probs=48.4
Q ss_pred ccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhhc
Q psy15912 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRH 467 (482)
Q Consensus 412 im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~~ 467 (482)
+|.+.+.++.++.++.++...|.+.+...+||++ +.+++|+||..|++++.....
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~~~~ 58 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAGG 58 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHhccC
Confidence 4558899999999999999999999999999996 448999999999999875443
No 208
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.04 E-value=0.0015 Score=55.21 Aligned_cols=46 Identities=15% Similarity=0.393 Sum_probs=42.1
Q ss_pred CceeeeCCCCHHHHHHHHHHcCCCEEEEECC---CCeEEEEEeHHHhHH
Q psy15912 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNN---NNHVVGMITRKDLAR 461 (482)
Q Consensus 416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~---~g~lvGIITr~DLl~ 461 (482)
++.++.+++++.++.+.|.+.+.+.+||+|+ +|+++|+|+.+|++.
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~ 51 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF 51 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence 5678999999999999999999999999997 789999999999874
No 209
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.99 E-value=0.0017 Score=54.00 Aligned_cols=47 Identities=23% Similarity=0.545 Sum_probs=42.9
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~ 461 (482)
+++.++++++++.++.+.|.+.+...+||+|++|+++|+++.+|+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~ 48 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRF 48 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeee
Confidence 45778999999999999999999999999998899999999999874
No 210
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.97 E-value=0.0024 Score=53.35 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=42.8
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~ 48 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKV 48 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence 35678999999999999999999999999985 4999999999999754
No 211
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.90 E-value=0.0026 Score=52.82 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=40.6
Q ss_pred eeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 418 FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 418 ~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
.++++++++.++.+.|.+.+...+||+|+ |+++|+++.+|+.+.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~ 47 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA 47 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence 46899999999999999999999999997 999999999999864
No 212
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.89 E-value=0.0035 Score=43.16 Aligned_cols=47 Identities=32% Similarity=0.639 Sum_probs=41.3
Q ss_pred eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEE
Q psy15912 223 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGL 302 (482)
Q Consensus 223 ~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGi 302 (482)
+.++.+.+++.++.+.+++.+++.+||++++ ++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~g~ 38 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-------------------------------------------GRLVGI 38 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-------------------------------------------CeEEEE
Confidence 5678999999999999999999999999875 589999
Q ss_pred EeHHHHHHHH
Q psy15912 303 ILRSQLIILI 312 (482)
Q Consensus 303 Is~~dL~~~l 312 (482)
++..++...+
T Consensus 39 i~~~~l~~~~ 48 (49)
T smart00116 39 VTRRDIIKAL 48 (49)
T ss_pred EEHHHHHHhh
Confidence 9999987654
No 213
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.83 E-value=0.0025 Score=68.69 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=52.5
Q ss_pred ccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912 212 NITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD 289 (482)
Q Consensus 212 ~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (482)
..+++|+|++ +++++.+++++.+++++|.+++.+.+||||++
T Consensus 160 ~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~------------------------------------ 203 (502)
T PRK07107 160 DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN------------------------------------ 203 (502)
T ss_pred CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC------------------------------------
Confidence 4579999996 78999999999999999999999999999875
Q ss_pred CCCCCCCCeEEEEEeHHHHHHHH
Q psy15912 290 ASRKESPGRLVGLILRSQLIILI 312 (482)
Q Consensus 290 ~~~~~~~g~lvGiIs~~dL~~~l 312 (482)
++++|+|+++|+++..
T Consensus 204 -------g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 204 -------GNLVYLVFRKDYDSHK 219 (502)
T ss_pred -------CeEEEEEEhHHHHhcc
Confidence 6899999999998754
No 214
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.82 E-value=0.0027 Score=67.93 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=53.9
Q ss_pred cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912 213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR 292 (482)
Q Consensus 213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (482)
.+++++|+++++++++++++.+++++|.+++.+.+||||++
T Consensus 146 ~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~--------------------------------------- 186 (475)
T TIGR01303 146 TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD--------------------------------------- 186 (475)
T ss_pred CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------------------------
Confidence 46899999999999999999999999999999999999975
Q ss_pred CCCCCeEEEEEeHHHHHHHHHh
Q psy15912 293 KESPGRLVGLILRSQLIILIKH 314 (482)
Q Consensus 293 ~~~~g~lvGiIs~~dL~~~l~~ 314 (482)
++++|+|+++||++....
T Consensus 187 ----g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 187 ----GTLAGILTRTGALRATIY 204 (475)
T ss_pred ----CeEEEEEEHHHHHHHHhC
Confidence 689999999999876654
No 215
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.74 E-value=0.0027 Score=68.38 Aligned_cols=53 Identities=11% Similarity=0.395 Sum_probs=48.3
Q ss_pred ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC---CeEEEEEeHHHhH
Q psy15912 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN---NHVVGMITRKDLA 460 (482)
Q Consensus 408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~---g~lvGIITr~DLl 460 (482)
..++.|.++|+++++++++.++.++|++.+.+.+||+|++ ++++||||.+|+.
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~ 152 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID 152 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence 3556788999999999999999999999999999999873 7999999999986
No 216
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.74 E-value=0.0031 Score=52.79 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=42.4
Q ss_pred ceeeeCCCCHHHHHHHHHHcCCCEEEEECC---CCeEEEEEeHHHhHHHH
Q psy15912 417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNN---NNHVVGMITRKDLARYR 463 (482)
Q Consensus 417 p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~---~g~lvGIITr~DLl~~~ 463 (482)
...+++++++.++.+.+.+.+.+.+||+|+ +|+++|+|+++|+.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~ 53 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL 53 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH
Confidence 456899999999999999999999999998 69999999999998754
No 217
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.72 E-value=0.0048 Score=51.13 Aligned_cols=46 Identities=33% Similarity=0.429 Sum_probs=41.4
Q ss_pred ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 417 p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
..++++++++.++...|.+.+...+||+|++++++|+++++|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~ 48 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN 48 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc
Confidence 4578889999999999999999999999988999999999999853
No 218
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.71 E-value=0.0039 Score=67.29 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=54.8
Q ss_pred ccchhhcccCC--eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912 212 NITARIVKSHP--VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD 289 (482)
Q Consensus 212 ~l~a~dvM~~~--~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (482)
..+++++|+++ ++++.+++++.+++++|.+++.+.+||||++
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~------------------------------------ 205 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED------------------------------------ 205 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC------------------------------------
Confidence 45789999976 8899999999999999999999999999875
Q ss_pred CCCCCCCCeEEEEEeHHHHHHHHHhh
Q psy15912 290 ASRKESPGRLVGLILRSQLIILIKHK 315 (482)
Q Consensus 290 ~~~~~~~g~lvGiIs~~dL~~~l~~~ 315 (482)
++++|+|+++|+.+.+..+
T Consensus 206 -------g~LvGvITr~DIlk~~~~p 224 (505)
T PLN02274 206 -------GELVDLVTRTDVKRVKGYP 224 (505)
T ss_pred -------CeEEEEEEHHHHHHHhhCc
Confidence 6899999999999887653
No 219
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.68 E-value=0.006 Score=63.64 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=43.9
Q ss_pred cccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 409 LNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 409 v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
+.+ +.....++++++++.+++..+.+.+. -++|+|+ |+++|+|++.++++...
T Consensus 328 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 328 VES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred hhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence 444 55667789999999999999888775 4888885 99999999999998653
No 220
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.50 E-value=0.0066 Score=61.10 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=57.4
Q ss_pred CccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912 209 LSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG 288 (482)
Q Consensus 209 ~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (482)
.....+...+|++++.++.+.++++.+.+.|--.++.-+||+|++
T Consensus 245 ~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n----------------------------------- 289 (432)
T COG4109 245 KKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSN----------------------------------- 289 (432)
T ss_pred CCCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCC-----------------------------------
Confidence 345667889999999999999999999999999999999999987
Q ss_pred CCCCCCCCCeEEEEEeHHHHHHHHHhh
Q psy15912 289 DASRKESPGRLVGLILRSQLIILIKHK 315 (482)
Q Consensus 289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~ 315 (482)
.+++|+|+|+|++..++..
T Consensus 290 --------~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 290 --------NTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred --------ceEEEEEEHHHHHHHHHHh
Confidence 6899999999999988754
No 221
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.33 E-value=0.0073 Score=60.45 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=44.2
Q ss_pred ccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464 (482)
Q Consensus 412 im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~ 464 (482)
.+.+.+.++.+++++.+.....++.+. .++|||++++++|+|++..++.+..
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence 355667789999999999998887664 7889999999999999999998753
No 222
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.87 E-value=0.015 Score=61.72 Aligned_cols=62 Identities=16% Similarity=0.295 Sum_probs=56.8
Q ss_pred ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912 212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 291 (482)
Q Consensus 212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (482)
...++|+|.++++++.+.++.+++.++++++..-..||||++
T Consensus 195 ~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-------------------------------------- 236 (451)
T COG2239 195 DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDED-------------------------------------- 236 (451)
T ss_pred HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCC--------------------------------------
Confidence 457889999999999999999999999999999999999987
Q ss_pred CCCCCCeEEEEEeHHHHHHHHHhhh
Q psy15912 292 RKESPGRLVGLILRSQLIILIKHKI 316 (482)
Q Consensus 292 ~~~~~g~lvGiIs~~dL~~~l~~~~ 316 (482)
++++|+|+..|++..+....
T Consensus 237 -----~~LiG~itiDDiidvi~eEa 256 (451)
T COG2239 237 -----NRLIGIITIDDIIDVIEEEA 256 (451)
T ss_pred -----CceeeeeeHHHHHHHHHHHH
Confidence 69999999999998887653
No 223
>PRK11573 hypothetical protein; Provisional
Probab=95.35 E-value=0.04 Score=58.17 Aligned_cols=57 Identities=9% Similarity=0.194 Sum_probs=50.4
Q ss_pred ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHH
Q psy15912 407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYR 463 (482)
Q Consensus 407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~ 463 (482)
..++++|.+ ....++.+++++++.+.+++.++.++||.+++ +.++|+|..||++.+.
T Consensus 187 ~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 187 VTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM 246 (413)
T ss_pred CChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHh
Confidence 378999987 45789999999999999999999999999654 6899999999999753
No 224
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.96 E-value=0.061 Score=55.80 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=51.3
Q ss_pred chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912 214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK 293 (482)
Q Consensus 214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (482)
++.+.|...+.++.+++++.+++..+.++.+. +||+|++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~---------------------------------------- 341 (363)
T TIGR01186 303 GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDED---------------------------------------- 341 (363)
T ss_pred chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCC----------------------------------------
Confidence 46677888888999999999999999998888 9999986
Q ss_pred CCCCeEEEEEeHHHHHHHHHhh
Q psy15912 294 ESPGRLVGLILRSQLIILIKHK 315 (482)
Q Consensus 294 ~~~g~lvGiIs~~dL~~~l~~~ 315 (482)
|+++|+|++.+++..+...
T Consensus 342 ---~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 342 ---QRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred ---CcEEEEEEHHHHHHHHHhh
Confidence 7999999999999888654
No 225
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=94.63 E-value=0.077 Score=56.33 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=52.4
Q ss_pred ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEeHHHhHHHHHhh
Q psy15912 407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVN-NNNHVVGMITRKDLARYRVWR 466 (482)
Q Consensus 407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD-~~g~lvGIITr~DLl~~~~~~ 466 (482)
..++++|++ +...++.+.+++++.+.+++.++.++||.| +.+.++|+|..|||+.+....
T Consensus 206 ~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 206 RTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred cEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 479999987 457788899999999999999999999998 456899999999999976544
No 226
>KOG0474|consensus
Probab=94.52 E-value=0.015 Score=62.53 Aligned_cols=120 Identities=15% Similarity=0.050 Sum_probs=86.9
Q ss_pred ccCCCchhhhhhhccccccccC------CCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHH-------HhcCCCC
Q psy15912 64 VSGGGMPEKYDFLSKDNVWKSN------GKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ-------SIFPEAT 128 (482)
Q Consensus 64 ~~g~G~~~~~~~l~~~~~~~~~------~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~-------~~~~~~~ 128 (482)
.-|.|-+.+-.-|||--....+ .|+ ...+++.|...|--.|.+-.||+.++.+++.=. .||+...
T Consensus 163 AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~Fr 242 (762)
T KOG0474|consen 163 AAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFR 242 (762)
T ss_pred ccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhc
Confidence 3466777999999998555553 555 899999999999999999999999999986311 1121110
Q ss_pred -CCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCch---hhHHHHHHHHHHHHHhh
Q psy15912 129 -WIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNIS---FGLPLMLTLITAKWIGD 183 (482)
Q Consensus 129 -~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~---~~~Pl~ia~~ia~~v~~ 183 (482)
.-+---+..+|+||-.+++.|||+..+++.+|-..+++ ++.=++++..++.++-+
T Consensus 243 nDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 243 NDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred ccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 02456788999999999999999999999888766544 44445555555444444
No 227
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.10 E-value=0.23 Score=52.23 Aligned_cols=58 Identities=12% Similarity=0.275 Sum_probs=49.0
Q ss_pred chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912 214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK 293 (482)
Q Consensus 214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (482)
.+++.|..++.++.+++++.+++..+.++.+. +||||++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~---------------------------------------- 376 (400)
T PRK10070 338 GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDED---------------------------------------- 376 (400)
T ss_pred chhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCC----------------------------------------
Confidence 35566777788999999999999998886655 9999976
Q ss_pred CCCCeEEEEEeHHHHHHHHHhh
Q psy15912 294 ESPGRLVGLILRSQLIILIKHK 315 (482)
Q Consensus 294 ~~~g~lvGiIs~~dL~~~l~~~ 315 (482)
|+++|+|++.+++..+...
T Consensus 377 ---~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 377 ---QQYVGIISKGMLLRALDRE 395 (400)
T ss_pred ---CcEEEEEEHHHHHHHHHhc
Confidence 7999999999999988654
No 228
>KOG2550|consensus
Probab=92.26 E-value=0.18 Score=51.92 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=52.0
Q ss_pred ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912 212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS 291 (482)
Q Consensus 212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (482)
..-+.|+|+++.++.+...++.++-++|++.+-..+||||++
T Consensus 170 ~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~-------------------------------------- 211 (503)
T KOG2550|consen 170 SLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDK-------------------------------------- 211 (503)
T ss_pred cchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccC--------------------------------------
Confidence 456789999988999999999999999999999999999986
Q ss_pred CCCCCCeEEEEEeHHHHHHHH
Q psy15912 292 RKESPGRLVGLILRSQLIILI 312 (482)
Q Consensus 292 ~~~~~g~lvGiIs~~dL~~~l 312 (482)
++++-++++.||.+.-
T Consensus 212 -----gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 212 -----GELVAMLSRTDLMKNR 227 (503)
T ss_pred -----Cceeeeeehhhhhhhc
Confidence 7999999999987653
No 229
>KOG0475|consensus
Probab=91.43 E-value=0.11 Score=56.17 Aligned_cols=97 Identities=21% Similarity=0.122 Sum_probs=68.5
Q ss_pred cCCCchhhhhhhcccccccc------CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHH
Q psy15912 65 SGGGMPEKYDFLSKDNVWKS------NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYA 136 (482)
Q Consensus 65 ~g~G~~~~~~~l~~~~~~~~------~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a 136 (482)
-|.|-+++--.++|-.--.. +.|- .-++++||.|-|--.|+.-++.++|.++..++...--+. .-.--+.
T Consensus 156 ~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e--~~~reil 233 (696)
T KOG0475|consen 156 CGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNE--AKKREIL 233 (696)
T ss_pred hcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccch--hHHHHHH
Confidence 46666699889998854222 2332 788999999999999999999999999988764432111 1122233
Q ss_pred HHHHHHHhhhhhchhHHHHHHHHHhhC
Q psy15912 137 LIGAAAQLGGVVRMTISLTIILIEATG 163 (482)
Q Consensus 137 ~vG~aa~~~g~~~~p~s~~vi~~Eltg 163 (482)
.+.+|+-.+.+.+||+..+++.+|-.-
T Consensus 234 sAaaAaGvavaFgAPIGGVlFslEev~ 260 (696)
T KOG0475|consen 234 SAAAAAGVAVAFGAPIGGVLFSLEEVS 260 (696)
T ss_pred HHHhhccchhhcCCccceeeeehhhhh
Confidence 344555556778999999999888765
No 230
>KOG0476|consensus
Probab=89.09 E-value=0.48 Score=52.46 Aligned_cols=120 Identities=16% Similarity=0.081 Sum_probs=81.0
Q ss_pred hccccccCCCchhhhhhhccc-----ccccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy15912 59 TYGVSVSGGGMPEKYDFLSKD-----NVWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI 130 (482)
Q Consensus 59 ~~~~~~~g~G~~~~~~~l~~~-----~~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~ 130 (482)
..+-+.-|.|-+.+--+|.|= ++..- ++|. .++|+|||..-|--.|-.-|+++....++.+.+-.+.+. +.
T Consensus 160 ~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g~-~e 238 (931)
T KOG0476|consen 160 YIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGGF-FE 238 (931)
T ss_pred eeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhcccc-cc
Confidence 345566677888888888775 23332 3565 899999999999999999999999999998875333221 11
Q ss_pred ch---hHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCc----hhhHHHHHHHHHHH
Q psy15912 131 DP---GKYALIGAAAQLGGVVRMTISLTIILIEATGNI----SFGLPLMLTLITAK 179 (482)
Q Consensus 131 ~~---~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~----~~~~Pl~ia~~ia~ 179 (482)
+. .-...+|.|.-.|.+.-+|++++++-+|.|..| +|+-..+.+++.|.
T Consensus 239 nesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~ 294 (931)
T KOG0476|consen 239 NESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAF 294 (931)
T ss_pred CcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHH
Confidence 21 223344445555667778999999999999733 34445555554443
No 231
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=88.35 E-value=0.83 Score=44.88 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912 422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462 (482)
Q Consensus 422 ~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~ 462 (482)
..+...++...|...+...+||||++|+++|.||+.|++.+
T Consensus 268 ~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 268 EGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred cchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 34445557888888999999999999999999999999864
No 232
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=87.49 E-value=0.31 Score=46.91 Aligned_cols=58 Identities=16% Similarity=0.302 Sum_probs=50.2
Q ss_pred cccccccccC--ceeeeCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHhHHHHH
Q psy15912 407 VKLNLFMNTS--PFSVQDSTSLPRVFKLFRALGLRHVVVVNN-NNHVVGMITRKDLARYRV 464 (482)
Q Consensus 407 i~v~~im~~~--p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~-~g~lvGIITr~DLl~~~~ 464 (482)
+.|+++|-+. -.++..+.++.+....+.+..+.++||+.+ +..+.||+--|||+++..
T Consensus 67 l~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~ 127 (293)
T COG4535 67 LRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR 127 (293)
T ss_pred hhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc
Confidence 3688999763 478899999999999999999999999954 458999999999999854
No 233
>KOG2118|consensus
Probab=81.31 E-value=2.5 Score=45.78 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=42.6
Q ss_pred cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHh
Q psy15912 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459 (482)
Q Consensus 407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DL 459 (482)
.+++..+.....-+++++++.+..+.|++... |+.|+.+...-++++|..|+
T Consensus 273 ~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~-H~~~v~~~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 273 LPVSESALLRLPLVPENMPLLDLLNEFQKGKS-HMAVVRNGHVDIFVLTLEDL 324 (498)
T ss_pred ccchhhhccccccCCCcccHHHHHHHHhhhhc-eeEEEecCCcceeeEeccch
Confidence 36788888888889999999999999987665 55555556678999999998
No 234
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=76.95 E-value=5.3 Score=41.77 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=42.7
Q ss_pred hhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q psy15912 215 ARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKE 294 (482)
Q Consensus 215 a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (482)
+.+ +.+++.++++++++.+++....++. ..+||+|+
T Consensus 328 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~------------------------------------------ 363 (382)
T TIGR03415 328 VES-LEAAPTVINPDTLMRDVLAARHRTG-GAILLVEN------------------------------------------ 363 (382)
T ss_pred hhh-hcccCcccCCCCcHHHHHHHHhcCC-CCeEEeeC------------------------------------------
Confidence 344 5557788999999999999877655 45888875
Q ss_pred CCCeEEEEEeHHHHHHHHH
Q psy15912 295 SPGRLVGLILRSQLIILIK 313 (482)
Q Consensus 295 ~~g~lvGiIs~~dL~~~l~ 313 (482)
|+++|+|++.+++..+.
T Consensus 364 --~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 364 --GRIVGVIGDDNIYHALL 380 (382)
T ss_pred --CeEEEEEeHHHHHHHHh
Confidence 59999999999988774
No 235
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=72.45 E-value=7.3 Score=39.60 Aligned_cols=53 Identities=21% Similarity=0.385 Sum_probs=43.4
Q ss_pred cccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q psy15912 218 VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPG 297 (482)
Q Consensus 218 vM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 297 (482)
.+.+++.++.++..+.+++...++.+ ..+||||++ +
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~-------------------------------------------~ 367 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQAP-CPVAVVDED-------------------------------------------G 367 (386)
T ss_pred cccccccccCccchHHHHHHHHhcCC-CceeEEcCC-------------------------------------------C
Confidence 45567788889999999888877654 568999986 7
Q ss_pred eEEEEEeHHHHHHHHHh
Q psy15912 298 RLVGLILRSQLIILIKH 314 (482)
Q Consensus 298 ~lvGiIs~~dL~~~l~~ 314 (482)
+++|++++.+++.++..
T Consensus 368 r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 368 RYVGIISRGELLEALAR 384 (386)
T ss_pred cEEEEecHHHHHHHHhc
Confidence 99999999999988754
No 236
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=54.78 E-value=58 Score=28.13 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCC---c-hhhHHHHHHHHHHHH
Q psy15912 105 CLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGN---I-SFGLPLMLTLITAKW 180 (482)
Q Consensus 105 sl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~---~-~~~~Pl~ia~~ia~~ 180 (482)
.++.|-+++.++|..+..+++...+....+.++.-....+..+.+.|-.++.++.=+.+. + ..+.|+++.+++-..
T Consensus 26 ~vi~gh~isa~iG~~~~~~~~~~~~~~alav~lai~~M~~~~~~HPPA~Atall~~l~~~~~~~~~~~~pVl~g~~il~~ 105 (120)
T PF04982_consen 26 NVIGGHLISALIGVLCVYLFGDPWWAAALAVGLAIVLMVLTRTVHPPAGATALLAVLGGASLGWGFVLIPVLLGSLILVV 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHcCCCCchhhhhhhhhhcccccCchHHHHHHHHHHHHHHH
Confidence 677888888899988888776532111111111122223367778888887776666664 2 345677666655444
Q ss_pred Hhh
Q psy15912 181 IGD 183 (482)
Q Consensus 181 v~~ 183 (482)
++-
T Consensus 106 ~a~ 108 (120)
T PF04982_consen 106 VAL 108 (120)
T ss_pred HHH
Confidence 443
No 237
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=53.79 E-value=32 Score=35.73 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=43.6
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912 221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV 300 (482)
Q Consensus 221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv 300 (482)
.++..+++.+++.+-+..+++.+-|---|||+- |.+.
T Consensus 275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY-------------------------------------------G~i~ 311 (423)
T COG4536 275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY-------------------------------------------GDIQ 311 (423)
T ss_pred cCCeecCCCCcHHHHHHHHHHhcceEEEEEecc-------------------------------------------CcEE
Confidence 466788999999999999998887777799987 7899
Q ss_pred EEEeHHHHHHHHHh
Q psy15912 301 GLILRSQLIILIKH 314 (482)
Q Consensus 301 GiIs~~dL~~~l~~ 314 (482)
|+||.+|++..+--
T Consensus 312 GLVTLEDIlEEIVG 325 (423)
T COG4536 312 GLVTLEDILEEIVG 325 (423)
T ss_pred eeeeHHHHHHHHhc
Confidence 99999999877654
No 238
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=48.37 E-value=32 Score=34.15 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=38.5
Q ss_pred CCccccchhhcccCCeeEe----cCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccC
Q psy15912 208 PLSSNITARIVKSHPVICL----RPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRD 283 (482)
Q Consensus 208 ~~l~~l~a~dvM~~~~~~l----~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (482)
..+...++.|.|.+..... .....-.+++.-+-......+||||++
T Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~------------------------------ 293 (309)
T COG1125 244 RLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDED------------------------------ 293 (309)
T ss_pred cccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCC------------------------------
Confidence 3456677788776643211 111222334444445566889999986
Q ss_pred CCCCCCCCCCCCCCeEEEEEeHHHHHH
Q psy15912 284 SSHKGDASRKESPGRLVGLILRSQLII 310 (482)
Q Consensus 284 ~~~~~~~~~~~~~g~lvGiIs~~dL~~ 310 (482)
|+++|.+++.+++.
T Consensus 294 -------------g~~~G~vt~~~l~~ 307 (309)
T COG1125 294 -------------GRPLGTVTRADLLD 307 (309)
T ss_pred -------------CcEeeEEEHHHHhh
Confidence 79999999999865
No 239
>KOG4112|consensus
Probab=46.34 E-value=51 Score=27.22 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15912 105 CLLTGAAWGRLFSLFLQS 122 (482)
Q Consensus 105 sl~iGa~~G~~~g~~~~~ 122 (482)
++.|||..|.++|.+.++
T Consensus 31 ilti~aiVg~i~Gf~~Qq 48 (101)
T KOG4112|consen 31 ILTIGAIVGFIYGFAQQQ 48 (101)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677888888888877665
No 240
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=41.79 E-value=1.6e+02 Score=24.12 Aligned_cols=67 Identities=25% Similarity=0.328 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhccccccccCCCcccccccCCCCcceehHHHHHHHHHHHHHHHHHH
Q psy15912 42 VFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ 121 (482)
Q Consensus 42 ~~~l~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~ 121 (482)
+.++++.-++..+-..++.+..+. -=+|.=-..+|+...-.-|.++
T Consensus 8 l~~L~~iGalIalgk~L~s~Epit---------------------------------~RL~iGR~ilGs~~S~~Aga~L- 53 (89)
T PF04550_consen 8 LLTLFVIGALIALGKVLASNEPIT---------------------------------LRLFIGRVILGSAVSVVAGAAL- 53 (89)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCc---------------------------------hhHHhHHHHHhhHHHHHHHHHH-
Confidence 445666666666666777766655 3333334444554444444433
Q ss_pred HhcCCCCCCchhHHHHHHHHHHhhhh
Q psy15912 122 SIFPEATWIDPGKYALIGAAAQLGGV 147 (482)
Q Consensus 122 ~~~~~~~~~~~~~~a~vG~aa~~~g~ 147 (482)
.++|+ ++| .|++|.++.++..
T Consensus 54 i~~Pd---l~p--lAv~GlgsalGI~ 74 (89)
T PF04550_consen 54 IQFPD---LPP--LAVIGLGSALGIA 74 (89)
T ss_pred hcCCC---CCH--HHHHHHHHHHHhh
Confidence 23565 345 6888888888643
No 241
>KOG4267|consensus
Probab=35.79 E-value=82 Score=26.82 Aligned_cols=45 Identities=29% Similarity=0.296 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhc
Q psy15912 103 IPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVR 149 (482)
Q Consensus 103 ~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~ 149 (482)
.|||+-|..+|.++|...-.+..+.. .-..+++.|.++++.+++.
T Consensus 28 i~SL~aGl~~G~l~g~~s~~l~~~~~--~~~~~~l~~~s~~L~gvmg 72 (110)
T KOG4267|consen 28 IPSLAAGLLFGALAGYGSYLLSRDKK--GGSLVALGGTSAALLGVMG 72 (110)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCC--cCchhHHHHHHHHHHHHHh
Confidence 59999999999999877666554421 1233455556666766654
No 242
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.39 E-value=97 Score=26.39 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhc
Q psy15912 106 LLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVR 149 (482)
Q Consensus 106 l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~ 149 (482)
|+-|-++|..+|.++-+++...+ .-.-.+.++||.|-+=.+.|
T Consensus 52 fIsGilVGa~iG~llD~~agTsP-wglIv~lllGf~AG~lnv~R 94 (116)
T COG5336 52 FISGILVGAGIGWLLDKFAGTSP-WGLIVFLLLGFGAGVLNVLR 94 (116)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777765443 23345677887775544443
No 243
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=31.74 E-value=3.9e+02 Score=24.10 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=10.7
Q ss_pred cceehHHHHHHHHHH
Q psy15912 99 GGVFIPCLLTGAAWG 113 (482)
Q Consensus 99 gG~f~Psl~iGa~~G 113 (482)
|+.|.|++..+-+.|
T Consensus 61 G~~~s~~f~~Sl~Gg 75 (148)
T PF07456_consen 61 GTLFSPSFLFSLAGG 75 (148)
T ss_pred CcchHHHHHHHHHHH
Confidence 777899888864443
No 244
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=30.79 E-value=69 Score=34.79 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHh
Q psy15912 424 TSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVW 465 (482)
Q Consensus 424 ~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~ 465 (482)
..++.+.+...+.|-.-++|+ +||++.|+|-.||+++...+
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~-~~~~~~GVI~LkDivK~Gi~ 453 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVV-ENGRILGVIYLKDIVKPGIK 453 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEE-ECCEEEEEEEehhhcchhHH
Confidence 357888888899999999999 58999999999999987443
No 245
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=27.35 E-value=97 Score=24.55 Aligned_cols=26 Identities=12% Similarity=0.362 Sum_probs=20.0
Q ss_pred CCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912 438 LRHVVVVNNNNHVVGMITRKDLARYR 463 (482)
Q Consensus 438 lr~lpVVD~~g~lvGIITr~DLl~~~ 463 (482)
.+.+-|||++|..+|++++.+-++.-
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A 37 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLA 37 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHH
Confidence 46788999999999999999988653
No 246
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=24.50 E-value=52 Score=27.04 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.6
Q ss_pred cCCCEEEEECCCCeEEEE
Q psy15912 436 LGLRHVVVVNNNNHVVGM 453 (482)
Q Consensus 436 ~~lr~lpVVD~~g~lvGI 453 (482)
-|...=||+|.+|+++||
T Consensus 103 ~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 103 PGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp TTTTTSEEEETTSEEEEE
T ss_pred CCcEeHhEECCCCEEEeC
Confidence 477778999999999997
No 247
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=24.31 E-value=76 Score=24.72 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=13.0
Q ss_pred ehHHHHHHHHHHHHHHHHH
Q psy15912 102 FIPCLLTGAAWGRLFSLFL 120 (482)
Q Consensus 102 f~Psl~iGa~~G~~~g~~~ 120 (482)
|.-.+++|++.|.++|.++
T Consensus 1 F~~g~l~Ga~~Ga~~glL~ 19 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLF 19 (74)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777655
No 248
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=24.23 E-value=74 Score=26.89 Aligned_cols=17 Identities=18% Similarity=0.473 Sum_probs=13.1
Q ss_pred EEEEECCCCeEEEEEeH
Q psy15912 440 HVVVVNNNNHVVGMITR 456 (482)
Q Consensus 440 ~lpVVD~~g~lvGIITr 456 (482)
..||.|.+|+++|+|.-
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 68999889999999874
No 249
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=23.77 E-value=2.6e+02 Score=27.04 Aligned_cols=49 Identities=24% Similarity=0.317 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhchhHHHHHH
Q psy15912 105 CLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTII 157 (482)
Q Consensus 105 sl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi 157 (482)
|=.+|+..|.+.+..+....+.. ++....++.-||++=++|+ |++-+.+
T Consensus 68 Ssl~G~lig~~~a~alv~~~~ps-~ir~~lltfsgvaSnFaGV---PLAfAFi 116 (282)
T COG4132 68 SSLLGLLIGFLLAWALVLGGLPS-WIRSFLLTFSGVASNFAGV---PLAFAFI 116 (282)
T ss_pred HHHHHHHHHHHHHHHHHHCCcHH-HHHHHHhhhhhhhhhccCC---hHHHHHH
Confidence 33467777776665554433222 3677888999999988876 6655444
No 250
>COG4129 Predicted membrane protein [Function unknown]
Probab=22.87 E-value=3.3e+02 Score=27.99 Aligned_cols=83 Identities=23% Similarity=0.228 Sum_probs=41.1
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH-HHHHh----hhhhchhHHHHHHHHHhhCCchhh----HHHH
Q psy15912 102 FIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIG-AAAQL----GGVVRMTISLTIILIEATGNISFG----LPLM 172 (482)
Q Consensus 102 f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG-~aa~~----~g~~~~p~s~~vi~~Eltg~~~~~----~Pl~ 172 (482)
.+=.-+.|.++|.++|.++..++...+ +.-+.+.++- +.++. .|++...+...-++.+.+++.-+. +-++
T Consensus 56 ~~~~r~~g~~iG~~~a~l~~~l~g~~~-~~~~v~~~i~i~~~~~~~~~~g~~~~~~~~~~ii~~~~~~~~~~~~r~l~~~ 134 (332)
T COG4129 56 RALQRLLGNALGAILAVLFFLLFGQNP-IAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFLIFNRFLLVF 134 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccH-HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence 444667788888888887776665321 1112221111 11111 233334444444567776644332 2345
Q ss_pred HHHHHHHHHhhhc
Q psy15912 173 LTLITAKWIGDFF 185 (482)
Q Consensus 173 ia~~ia~~v~~~~ 185 (482)
+.+.+|..+.-++
T Consensus 135 vG~~~a~lvn~~~ 147 (332)
T COG4129 135 VGVGVAFLVNLVM 147 (332)
T ss_pred HHHHHHHHHhhhc
Confidence 5555565555544
No 251
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=22.17 E-value=4.2e+02 Score=29.37 Aligned_cols=89 Identities=22% Similarity=0.309 Sum_probs=45.8
Q ss_pred CCcceehHH--HHHHHHHHHHHHHHHHHhcCCCCCCchhHH-HHHHHHHHhhhhhc---------hhHHHHHHHHHhhCC
Q psy15912 97 DSGGVFIPC--LLTGAAWGRLFSLFLQSIFPEATWIDPGKY-ALIGAAAQLGGVVR---------MTISLTIILIEATGN 164 (482)
Q Consensus 97 ~~gG~f~Ps--l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~-a~vG~aa~~~g~~~---------~p~s~~vi~~Eltg~ 164 (482)
.+|..+.=+ -++|.++|.++|.++..++++.++.-.... ..+|...+++...| +-++++++.+...++
T Consensus 41 ~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~p~l~~~~lal~i~~c~~~~~~~~~~~~y~~~lag~T~~iv~~~~~~~ 120 (650)
T PF04632_consen 41 SSGASLSKGLYRLIGTLIGAAAGLLLVALFPQSPLLFLLALALWIGLCLYLSLLDRNFRSYAFMLAGYTAAIVALPAVGN 120 (650)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcccC
Confidence 335554443 468999999999988877776432211111 22344444443233 234455555444443
Q ss_pred chhh--------HHHHHHHHHHHHHhhhc
Q psy15912 165 ISFG--------LPLMLTLITAKWIGDFF 185 (482)
Q Consensus 165 ~~~~--------~Pl~ia~~ia~~v~~~~ 185 (482)
.+.. .-+++.++++..++..+
T Consensus 121 p~~~f~~a~~R~~ei~iGi~~a~~v~~l~ 149 (650)
T PF04632_consen 121 PEQVFDLALWRVLEILIGILCATLVSMLF 149 (650)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3221 23455555566666554
No 252
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=22.01 E-value=1.8e+02 Score=32.47 Aligned_cols=38 Identities=11% Similarity=0.260 Sum_probs=26.2
Q ss_pred cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEe
Q psy15912 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMIT 455 (482)
Q Consensus 415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIIT 455 (482)
..|+.|.-..-..+. +........||.|.+|+++|+|+
T Consensus 125 ~~pv~v~g~EH~~~~---~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 125 GQPVKTMGDQHFKQA---LHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred CCceEEecHHHHHHh---ccCceEEeeEEEcCCCCEEEEEE
Confidence 445556554433333 34456678999999999999996
No 253
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=21.52 E-value=4.9e+02 Score=29.68 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q psy15912 107 LTGAAWGRLFSLFLQSIFPE 126 (482)
Q Consensus 107 ~iGa~~G~~~g~~~~~~~~~ 126 (482)
++|.++|.++|.++..++|.
T Consensus 434 i~GTl~G~llg~~l~~l~p~ 453 (701)
T TIGR01667 434 IIGTVVGLVIGVALHFLIPS 453 (701)
T ss_pred HHHHHHHHHHHHHHHHHcCc
Confidence 45888888888877666664
No 254
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=21.44 E-value=2.1e+02 Score=32.16 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhh
Q psy15912 112 WGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGV 147 (482)
Q Consensus 112 ~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~ 147 (482)
+|+++|.+...|....-+.-....+++|..+|++|.
T Consensus 591 l~ai~glf~~Yw~~l~lFqTL~~~~~lg~~t~~~G~ 626 (636)
T PF05817_consen 591 LGAIEGLFFLYWLGLNLFQTLPYLAVLGAVTFLSGN 626 (636)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhH
Confidence 555555554444321100123445677777777663
No 255
>COG3329 Predicted permease [General function prediction only]
Probab=20.83 E-value=3.4e+02 Score=27.59 Aligned_cols=71 Identities=21% Similarity=0.344 Sum_probs=40.9
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhC-CchhhHHHHHHH
Q psy15912 102 FIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATG-NISFGLPLMLTL 175 (482)
Q Consensus 102 f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg-~~~~~~Pl~ia~ 175 (482)
+.|.. .|.++|.++..+...+....+ ....+-.+..++..|++.-.++.+++-.+|-.| .++-+.|.|++.
T Consensus 71 v~~~~-~~~aL~~li~~ia~f~l~kl~--~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lal 142 (372)
T COG3329 71 VLPVA-LGVALGFLIVFIAYFLLRKLP--KVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLAL 142 (372)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHcc--ccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 55654 666666666654433321111 112233344456677777778888888888777 666666666654
No 256
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=20.01 E-value=9.3e+02 Score=27.75 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhc
Q psy15912 108 TGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVR 149 (482)
Q Consensus 108 iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~ 149 (482)
+||+.|.+.|.++..-.. ..+....+.|.+++++|..|
T Consensus 197 ~Gaa~Gv~~Gli~~l~~~----~~~~~~~~~af~GLlaG~fk 234 (764)
T TIGR02865 197 AGAAGGVVIGVILGLANN----ANLYQIGVFGFAGLLGGIFK 234 (764)
T ss_pred HhHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHHHHhhc
Confidence 455666666655543211 24555566777777777776
Done!