RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15912
(482 letters)
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 228 bits (583), Expect = 5e-68
Identities = 76/428 (17%), Positives = 138/428 (32%), Gaps = 122/428 (28%)
Query: 38 GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSD 97
FG L + + F+L + G+ + G
Sbjct: 314 DHFGWTELILMPIIKFILVALSIGLPLPAG------------------------------ 343
Query: 98 SGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTII 157
VF+P L GA +GRL+ ++ +F A I PG YA++GAAA GV R +S +I
Sbjct: 344 ---VFVPSFLIGAGFGRLYGELMRVVFGNA--IVPGSYAVVGAAAFTAGVTR-ALSCAVI 397
Query: 158 LIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARI 217
+ E TG I +P++++++ A +G+ F LY+ + + +P + S +TAR
Sbjct: 398 IFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTARE 457
Query: 218 V--KSHPVICLRPLETVGNIIDVL-KATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSH 274
+ L P +I +L K + FP++D
Sbjct: 458 IMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVID----------------------- 494
Query: 275 KGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFH 334
+ G L+G I R +++ ++H + + + +
Sbjct: 495 --------------------ANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDA 534
Query: 335 AEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVN 394
A+ S +
Sbjct: 535 ADLSENIEGLVD--------------------------ETPSGEHSSKGKRTATVLEPTS 568
Query: 395 DLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMI 454
LVV + V + + ++ LF L + V +VG++
Sbjct: 569 SLVVPCDVSPIVV-------------TSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIV 614
Query: 455 TRKDLARY 462
R+D+A
Sbjct: 615 EREDVAYG 622
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 95.7 bits (238), Expect = 3e-23
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
RLVG +LR LII I++ K++ S F P P T
Sbjct: 60 QRLVGFVLRRDLIISIENARKKQDGVVST---SIIYFTEHSPPLPPYTPP---------T 107
Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
+KL ++ SPF+V D T + V +FR LGLR +V +N ++G+IT+KD+ ++
Sbjct: 108 LKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVT-HNGRLLGIITKKDVLKH 162
Score = 28.7 bits (64), Expect = 3.5
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 419 SVQDSTSLPRVFKLFRALGLR--HVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGL 473
QDS ++ V + VVV + +VG + R+DL + G+
Sbjct: 29 LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGV 85
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 75.9 bits (187), Expect = 5e-15
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 98 SGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTII 157
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I+
Sbjct: 353 PGGIFAPMLALGTVLGTAFGMVAVELFPQYH-LEAGTFAIAGMGALLAASIRAPLTGIIL 411
Query: 158 LIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYD 191
++E T N LP+++T + A + F + LY
Sbjct: 412 VLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYS 446
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 75.1 bits (185), Expect = 1e-14
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 98 SGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTII 157
GG+F P L + + +FP +P A+ G A + VR ++ ++
Sbjct: 345 IGGIFAPMLGIASIVSVAMARHFHLLFPSQI-PEPAVMAIAGMGALVAATVRAPLTAILL 403
Query: 158 LIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYD 191
IE T N LPL++T + A + + + +Y
Sbjct: 404 TIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYT 438
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain,
CBS domains, ION CH regulatory subunit, transport
protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Length = 250
Score = 70.9 bits (172), Expect = 6e-14
Identities = 32/263 (12%), Positives = 70/263 (26%), Gaps = 20/263 (7%)
Query: 200 PLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHS 259
P L+W NI + V + T G+++ VL+ T FP VD
Sbjct: 1 PELSWSSA-NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVD-------- 51
Query: 260 SDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKE 319
++ + + + + + +
Sbjct: 52 ---TPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGRNGETGASFTGEAESS 108
Query: 320 NQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLS 379
+ + + + P + ++ ++ +
Sbjct: 109 FAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE 168
Query: 380 SEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLR 439
+ E R+ ++ SPF + + TSL + LF LGL
Sbjct: 169 EMLTLEEIYRWEQ-------REKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLD 221
Query: 440 HVVVVNNNNHVVGMITRKDLARY 462
V + +VG++ ++
Sbjct: 222 RAYVTSMGK-LVGVVALAEIQAA 243
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 61.3 bits (149), Expect = 1e-10
Identities = 42/270 (15%), Positives = 82/270 (30%), Gaps = 89/270 (32%)
Query: 210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAG 269
+ N R + VI L+ + I+ + G PIV+ E
Sbjct: 81 AINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDE---------------- 124
Query: 270 STDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQ-------- 321
+L+ LI +I + KI +
Sbjct: 125 ---------------------------NQLISLITERDVIRALLDKIDENEVIDDYITRD 157
Query: 322 ---NWPDDQLSSEIFH--AEYRCRPRIWSP----GRLVGLILRSQLIILIKHKIYKENQN 372
P ++L ++ R R+ P GRLVG+I + I L+ +
Sbjct: 158 VIVATPGERLK-DVARTMVRNGFR-RL--PVVSEGRLVGIITSTDFIKLLGSDWAFNHM- 212
Query: 373 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKL 432
+ + ++ + E M + ++ L ++ ++
Sbjct: 213 -------------QTGNVREITNVRMEE-----------IMKRDVITAKEGDKLKKIAEI 248
Query: 433 FRALGLRHVVVVNNNNHVVGMITRKDLARY 462
+ + VV+ N + G+IT KD+ +Y
Sbjct: 249 MVTNDIGALPVVDENLRIKGIITEKDVLKY 278
Score = 54.4 bits (131), Expect = 2e-08
Identities = 13/130 (10%), Positives = 45/130 (34%), Gaps = 22/130 (16%)
Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
++VG+I ++ + +Y + + +
Sbjct: 46 NKVVGIITSMDIVDFM----------------------GGGSKYNLIREKHERNFLAAIN 83
Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR 466
+ M + +++++ + + F + +VN+ N ++ +IT +D+ R + +
Sbjct: 84 EPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDK 143
Query: 467 HGGRMGLEEL 476
+++
Sbjct: 144 IDENEVIDDY 153
Score = 52.5 bits (126), Expect = 9e-08
Identities = 29/273 (10%), Positives = 67/273 (24%), Gaps = 103/273 (37%)
Query: 216 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHK 275
+I ++ ++ + P T+ + + + P+V+
Sbjct: 7 KIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVN------------------------ 42
Query: 276 GDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHA 335
++VG+I ++ + +
Sbjct: 43 ------------------AGNNKVVGIITSMDIVDFMGGGSKYNLIREKHE--------- 75
Query: 336 EYRCRPRIWSPGRLVGLILRSQLI-------------ILIKHKIYKENQNWPDDQLSSEI 382
R + + V I+ +I + +
Sbjct: 76 ----RNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNV---------------- 115
Query: 383 FHAEYPRYPSVNDL-----VVSEND--------RSFTVKLNLFMNTSPFSVQDSTSLPRV 429
P VND +++E D ++ ++ L V
Sbjct: 116 -----GGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDV 170
Query: 430 FKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
+ G R + VV + +VG+IT D +
Sbjct: 171 ARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKL 202
Score = 45.9 bits (109), Expect = 1e-05
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 405 FTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVN-NNNHVVGMITRKDLARY 462
F + + N +V +T++ + R + VVN NN VVG+IT D+ +
Sbjct: 2 FVRVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDF 60
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 59.4 bits (144), Expect = 5e-10
Identities = 28/265 (10%), Positives = 76/265 (28%), Gaps = 86/265 (32%)
Query: 211 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGS 270
S + + + I+++ + P+VD+
Sbjct: 91 STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN----------------- 133
Query: 271 TDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQN-------- 322
+ VG++ + ++L K
Sbjct: 134 --------------------------DKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQ 167
Query: 323 --WPDDQLSS--EIFHAE-YRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQ 377
+ + +L ++ +R P I ++VG++ I + + K + ++ +
Sbjct: 168 TIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGK 227
Query: 378 LSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALG 437
+ ++ M T+ ++ + S+ R
Sbjct: 228 VVKDV------------------------------MVTNLVTIDELASVNRAAAEMIVKR 257
Query: 438 LRHVVVVNNNNHVVGMITRKDLARY 462
+ ++++N +N + G+IT +DL
Sbjct: 258 IGSLLILNKDNTIRGIITERDLLIA 282
Score = 50.1 bits (120), Expect = 5e-07
Identities = 12/116 (10%), Positives = 36/116 (31%), Gaps = 26/116 (22%)
Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
++ GL+ L+ ++ ++ + +
Sbjct: 59 EKIEGLLTTRDLLSTVESYCKDSCSQG---------------DLYHISTTPIID------ 97
Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
+M +P +V +++ + + VV+ N+ VG++T ++
Sbjct: 98 -----YMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLL 148
Score = 44.4 bits (105), Expect = 5e-05
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 399 SENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKD 458
EN + + M +P + L FK G+ ++V N + G++T +D
Sbjct: 12 HENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVA--NEKIEGLLTTRD 69
Query: 459 LARY 462
L
Sbjct: 70 LLST 73
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 57.4 bits (139), Expect = 6e-10
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 347 GRLVGLILRSQLI--ILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRS 404
LVG++ L+ I + + +PD + + F+ VV +
Sbjct: 47 WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGD---- 102
Query: 405 FTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
M SP V+DST+L +L R + VV+ + ++G++TR ++ R
Sbjct: 103 -------LMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRA 153
Score = 47.4 bits (113), Expect = 2e-06
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 412 FM--NTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR 466
FM + V+ STS+ +L + + V+++N +VG+++ DL
Sbjct: 9 FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSIS 65
Score = 29.3 bits (66), Expect = 2.0
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 211 SNITARIV--KSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
+ T + ++P +V + +++L G P++D
Sbjct: 2 TGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVID 44
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 54.9 bits (133), Expect = 2e-09
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 395 DLV-VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGM 453
D+V +S K FM S ++++ + + L R +RH+ VV++ ++ G+
Sbjct: 54 DIVKAIGKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGI 113
Query: 454 ITRKDLARY 462
I+ +D+ R
Sbjct: 114 ISIRDITRA 122
Score = 44.1 bits (105), Expect = 8e-06
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
+M T SV L + K+ + V+VV+ N VG+IT +D+ +
Sbjct: 9 YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN-KPVGIITERDIVK 57
Score = 27.9 bits (63), Expect = 3.5
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 211 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
+ VI + + +I V+ + +VD
Sbjct: 2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD 42
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 55.9 bits (135), Expect = 2e-09
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 397 VVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR 456
+ N + V + L M V+ + V GL VV++ VVG++T
Sbjct: 65 FIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTL 124
Query: 457 KDLARY 462
DL+RY
Sbjct: 125 TDLSRY 130
Score = 50.5 bits (121), Expect = 1e-07
Identities = 12/56 (21%), Positives = 31/56 (55%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRH 467
MN++ +V +T++ K+ L +VV ++N + VG+++ + + + + R+
Sbjct: 14 IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRN 69
Score = 28.1 bits (63), Expect = 5.3
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 220 SHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
+ + TV + + ++ G + D
Sbjct: 16 NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKD 47
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 55.0 bits (132), Expect = 3e-09
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 27/115 (23%)
Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
LVG++ R+QL+ ++ ++ Q +I P P
Sbjct: 56 QILVGIVQRAQLVQALQA--EPPSRAPGHQQCLQDILARGCPTEPV-------------- 99
Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
++ T+L + LF+ L L+ + V + VG ++ ++ +
Sbjct: 100 ----------TLTLFSETTLHQAQNLFKLLNLQSLFVT-SRGRAVGCVSWVEMKK 143
Score = 40.4 bits (94), Expect = 3e-04
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN--NNHVVGMITRKDLARYRVWRHGG 469
FMN S ++ T L V K+ + + +V + + +VG++ R L +
Sbjct: 18 FMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS 77
Query: 470 RMGLEELKISSTL 482
R + + L
Sbjct: 78 RAPGHQQCLQDIL 90
Score = 37.7 bits (87), Expect = 0.002
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
S ++ +H + L + ++ V+ +T +P+V+
Sbjct: 10 SHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVE 51
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 53.4 bits (129), Expect = 6e-09
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 395 DLV-VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGM 453
D++ SP +V D+ + + R +RHVVVVN N +VG+
Sbjct: 58 DILRAVAQRLDLDGPAMPIA-NSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGV 116
Query: 454 ITRKDLARYRV 464
++ +DL R
Sbjct: 117 LSIRDLCFERA 127
Score = 42.3 bits (100), Expect = 6e-05
Identities = 8/60 (13%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 404 SFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVV--NNNNHVVGMITRKDLAR 461
+ ++ + + P S+ ++ ++ V + V+ +N V +++ +D+ R
Sbjct: 2 AMAIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILR 61
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 53.1 bits (128), Expect = 1e-08
Identities = 14/64 (21%), Positives = 26/64 (40%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRM 471
++ P V++ T + + + V V +N +VGMI L + + G +
Sbjct: 21 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFI 80
Query: 472 GLEE 475
EE
Sbjct: 81 PKEE 84
Score = 51.9 bits (125), Expect = 3e-08
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 22/115 (19%)
Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
+LVG+I L+ ++ E+ + R + SE
Sbjct: 57 NKLVGMIPVMHLL-------KVSGFHFFGFIPKEELIRSSMKR---LIAKNASE------ 100
Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
M P V T L KL ++ + VV+ +VG + ++
Sbjct: 101 -----IM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILL 149
Score = 31.1 bits (71), Expect = 0.37
Identities = 4/32 (12%), Positives = 8/32 (25%)
Query: 220 SHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
S + + I+D + V
Sbjct: 23 SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVA 54
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 54.0 bits (130), Expect = 1e-08
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 397 VVSEND---RSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGM 453
VV++ D + ++ F V + ++ LF ++ VV+ + G
Sbjct: 59 VVNKEDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGA 118
Query: 454 ITRKDLARYR-----VWRHGGRMGLE 474
++ D + G R +
Sbjct: 119 VSLHDFLEALIEALAMDVPGIRFSVL 144
Score = 48.6 bits (116), Expect = 9e-07
Identities = 8/48 (16%), Positives = 20/48 (41%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
++ V++S ++ R +V + H G++ ++DL
Sbjct: 18 WVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDL 65
Score = 28.2 bits (63), Expect = 5.2
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 220 SHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
+ + TV + ++ N + D
Sbjct: 20 TQDFPMVEESATVRECLHRMRQYQTNECIVKD 51
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 51.9 bits (125), Expect = 3e-08
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
M P ++ + +L L AL +RHV +V+ N ++G+++++DL
Sbjct: 10 MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLA 59
Score = 42.3 bits (100), Expect = 7e-05
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 389 RYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN 448
S + +F L M+T SV L + + + VV +
Sbjct: 60 AQESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD- 118
Query: 449 HVVGMITRKDLARY 462
+VG+IT D
Sbjct: 119 VLVGIITDSDFVTI 132
Score = 29.6 bits (67), Expect = 1.5
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 220 SHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
+ L T+ + +++A PIVD
Sbjct: 12 TRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD 43
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 51.0 bits (123), Expect = 4e-08
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHG 468
MN V + +L + R + + + +++ + GM+T +D+ + G
Sbjct: 13 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI-KGLAAG 68
Score = 49.5 bits (119), Expect = 1e-07
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 397 VVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR 456
++ T S + V + S+ + + +R V V+ + + +VG++T
Sbjct: 64 GLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVI-SEHRLVGIVTE 122
Query: 457 KDLARY 462
D+AR+
Sbjct: 123 ADIARH 128
Score = 29.8 bits (68), Expect = 0.82
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 211 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
+ TAR + + V C+ ET+ ++ PI
Sbjct: 6 TMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICG 46
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 51.5 bits (124), Expect = 4e-08
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 29/116 (25%)
Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
GR+V + + +I L K Y D+ V++
Sbjct: 62 GRVVDIYSKFDVINLAAEKTYNN------------------------LDVSVTK-----A 92
Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
++ +L + + +VVV+ N+ V G+++ D+ +
Sbjct: 93 LQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQA 148
Score = 44.9 bits (107), Expect = 6e-06
Identities = 9/59 (15%), Positives = 24/59 (40%)
Query: 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR 466
+L + + V+ +T + +F + + VV+ VV + ++ D+ +
Sbjct: 22 ELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK 80
Score = 28.0 bits (63), Expect = 4.3
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 208 PLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
++ + R V+ ET+ II+ L + +VD
Sbjct: 88 SVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVD 131
Score = 27.6 bits (62), Expect = 5.7
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 192 IHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
H P + L +I + +R V + + + P+VD
Sbjct: 3 HHHHHHEFPKPEFMSKSLEE---LQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD 59
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 51.0 bits (123), Expect = 5e-08
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 29/116 (25%)
Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
G L+ + ++ LIK IY + LS + A R +
Sbjct: 52 GYLINVYEAYDVLGLIKGGIYND--------LSLSVGEALMRRSDDFEGVYT-------- 95
Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
+ L + R + VV++ +VG++T D+ +Y
Sbjct: 96 -------------CTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKY 138
Score = 46.0 bits (110), Expect = 3e-06
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
LN+ + S Q +T + V ++ + V +++ N +++ + D+
Sbjct: 12 DLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 63
Score = 27.5 bits (62), Expect = 5.1
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
+ R V + + I+D ++ + F +VD
Sbjct: 83 LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD 121
Score = 27.5 bits (62), Expect = 5.5
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 216 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
I+ + + V ++I +L + PI+D
Sbjct: 14 NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID 49
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol,
protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Length = 323
Score = 53.4 bits (128), Expect = 5e-08
Identities = 20/170 (11%), Positives = 61/170 (35%), Gaps = 8/170 (4%)
Query: 297 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLI--L 354
R GL+ + I +I++ ++ D+L + R + L
Sbjct: 74 SRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPL 133
Query: 355 RSQLIILIKHK-----IYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKL 409
+ +++ + + +++ + + S + ++ ++N L
Sbjct: 134 FEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIP-IGDL 192
Query: 410 NLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
N+ + S Q +T + V ++ + V +++ N +++ + D+
Sbjct: 193 NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 242
Score = 52.3 bits (125), Expect = 1e-07
Identities = 31/249 (12%), Positives = 72/249 (28%), Gaps = 54/249 (21%)
Query: 218 VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGD 277
V + P + + + P++D + + S +
Sbjct: 119 VDQLDTASIHPSRPLFEACLKMLESRSGRIPLID-------QDEETHREIVVSVLTQYRI 171
Query: 278 TSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFH--A 335
K + + + + P + +I + + ++
Sbjct: 172 --LKFVALNCRETHFLKIPIGDLNIITQDNMKSC------------QMTTPVIDVIQMLT 217
Query: 336 EYRCR--PRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSV 393
+ R P I G L+ + ++ LIK IY + SV
Sbjct: 218 QGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL-------------------SV 258
Query: 394 NDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGM 453
+ ++ +D V ++ + L + R + VV++ +VG+
Sbjct: 259 GEALMRRSDDFEGV----------YTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGV 308
Query: 454 ITRKDLARY 462
+T D+ +Y
Sbjct: 309 LTLSDILKY 317
Score = 33.8 bits (77), Expect = 0.10
Identities = 9/105 (8%), Positives = 30/105 (28%), Gaps = 7/105 (6%)
Query: 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNL-FMNTSPFSVQDSTSLPRVFKLFRALGLRH 440
+ + + + D ++ L S+ S L
Sbjct: 88 VIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGR 147
Query: 441 VVVVNNNNH-----VVGMITRKDLARYRVWRHGGRMGLEELKISS 480
+ +++ + VV ++T+ + ++ + ++ I
Sbjct: 148 IPLIDQDEETHREIVVSVLTQYRILKFV-ALNCRETHFLKIPIGD 191
Score = 30.3 bits (68), Expect = 1.4
Identities = 5/60 (8%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNH-VVGMITRKDLARYRVWRHGGRMGLEELK 477
+ S + + + + + ++ G++T D + E +
Sbjct: 44 VLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVD 103
Score = 29.2 bits (65), Expect = 3.0
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 208 PLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
+ + R V + + I+D ++ + F +VD
Sbjct: 257 SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD 300
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 53.0 bits (127), Expect = 8e-08
Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 29/116 (25%)
Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
GR+V + + +I L K Y + L + A
Sbjct: 234 GRVVDIYSKFDVINLAAEKTY--------NNLDVSVTKA--------------------- 264
Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
++ +L + + +VVV+ ++ V G+++ D+ +
Sbjct: 265 LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQA 320
Score = 47.6 bits (113), Expect = 4e-06
Identities = 9/55 (16%), Positives = 23/55 (41%)
Query: 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
+L + + V+ +T + +F + + VV+ VV + ++ D+
Sbjct: 194 ELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL 248
Score = 34.2 bits (78), Expect = 0.076
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 403 RSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH-VVGMITRKDLAR 461
+S + ++ S + + F G+R + ++ VGM+T D
Sbjct: 33 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFIN 92
Query: 462 Y 462
Sbjct: 93 I 93
Score = 33.8 bits (77), Expect = 0.10
Identities = 9/96 (9%), Positives = 26/96 (27%), Gaps = 2/96 (2%)
Query: 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHV 441
I H Y + ++ + + SL + +
Sbjct: 93 ILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRL 152
Query: 442 VVVNN-NNHVVGMITRKDLARYRVWRHGGRMGLEEL 476
V++ + + + ++T K + ++ E
Sbjct: 153 PVIDPESGNTLYILTHKRILKFL-KLFITEFPKPEF 187
Score = 29.5 bits (66), Expect = 2.3
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 208 PLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
++ + R V+ ET+ II+ L + +VD
Sbjct: 260 SVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD 303
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 49.9 bits (120), Expect = 1e-07
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVW 465
+ ++M V+ STS+ +L + +VV+N++ +VVG T+ D+ R RV
Sbjct: 6 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIR-RVI 64
Query: 466 RHG 468
G
Sbjct: 65 VPG 67
Score = 47.6 bits (114), Expect = 6e-07
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 395 DLV--VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG 452
D++ V + + + M + + +T L V + ++H+++ +VG
Sbjct: 58 DIIRRVIVPGLPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVG 116
Query: 453 MITRKDLARY 462
+ T DL
Sbjct: 117 IFTLSDLLEA 126
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
PSI-2, protein structure initiative; HET: EPE; 1.66A
{Chlorobium tepidum tls}
Length = 128
Score = 49.3 bits (118), Expect = 1e-07
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 392 SVNDLV-VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV 450
++ L+ + + KL + + S + L A V + + +
Sbjct: 52 HLSRLLEGRKGWPTVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRY 111
Query: 451 VGMITRKDLARY 462
G+++RK + +
Sbjct: 112 EGVVSRKRILGF 123
Score = 39.3 bits (92), Expect = 4e-04
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR 466
V + T S + A G V++ +GM+ L R
Sbjct: 5 VTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGER-YLGMVHLSRLLEGRKGW 63
Query: 467 HGGRMGLEEL 476
+ L E
Sbjct: 64 PTVKEKLGEE 73
Score = 27.4 bits (61), Expect = 5.2
Identities = 5/42 (11%), Positives = 15/42 (35%)
Query: 210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
++++T + + + L A+ P++D
Sbjct: 2 NASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLD 43
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 49.2 bits (118), Expect = 2e-07
Identities = 8/50 (16%), Positives = 22/50 (44%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
M + + + + F+ + + V+++ N V+G++T D+
Sbjct: 13 VMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY 62
Score = 45.7 bits (109), Expect = 3e-06
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 395 DLV--VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGL-----RHVVVVNNN 447
D+ + + + + M ++ + S+ K G + VV+ N
Sbjct: 59 DIGYNLIRDKYTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKN 118
Query: 448 NHVVGMITRKDLARY 462
N +VG+I+ D+ R
Sbjct: 119 NKLVGIISDGDIIRT 133
Score = 33.0 bits (76), Expect = 0.069
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 211 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
NI + V + VI + E V + + + P++D
Sbjct: 6 KNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVID 46
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 49.2 bits (118), Expect = 3e-07
Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 397 VVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR 456
V + S +++ M + Q +++ ++ ++ RHV V N + G+I+
Sbjct: 83 VAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENG-RLAGIISI 141
Query: 457 KDLARYRV 464
D+ + R+
Sbjct: 142 GDVVKARI 149
Score = 48.1 bits (115), Expect = 7e-07
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGR 470
+V S+ A + VVV + + V+G+ T +DL + V G
Sbjct: 33 KGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK-AVAGQGAA 89
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 48.0 bits (115), Expect = 7e-07
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 397 VVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR 456
VV + S ++ M V+ S S L +RH+ V+ + ++G+I+
Sbjct: 68 VVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVL-DGGKLIGLISI 126
Query: 457 KDLARYRV 464
DL + +
Sbjct: 127 GDLVKSVI 134
Score = 41.9 bits (99), Expect = 1e-04
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGG 469
+ ++V + + KL G+ ++VV+ + + G++T +D AR +V
Sbjct: 19 SGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIVTERDYAR-KVVLQER 73
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 47.1 bits (113), Expect = 8e-07
Identities = 10/68 (14%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 397 VVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR 456
++E D VK+ M ++ ++ + + ++V ++ ++G+I+
Sbjct: 55 AIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISA 113
Query: 457 KDLARYRV 464
D+ R ++
Sbjct: 114 TDILRAKM 121
Score = 45.2 bits (108), Expect = 3e-06
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
M T ++ + SL V + + VVV VG++T D+
Sbjct: 7 MVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEG-VRVGIVTTWDVLE 54
Score = 28.6 bits (65), Expect = 1.9
Identities = 3/39 (7%), Positives = 12/39 (30%)
Query: 213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
+ V V + ++ +++ + +V
Sbjct: 1 MRVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK 39
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 47.4 bits (113), Expect = 1e-06
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 412 FMNTSP--FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGG 469
M +S VQ L + G + V++ + G+I+ + +
Sbjct: 20 LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERI 79
Query: 470 RM-GLEELKIS 479
LEE+K+
Sbjct: 80 EFERLEEMKVE 90
Score = 44.3 bits (105), Expect = 1e-05
Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
M ++ S + ++ + VN + + G++TR+ + +
Sbjct: 92 VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKL 140
Score = 27.7 bits (62), Expect = 5.3
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 217 IVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
++ S V ++ + + + VL + ++ P++D
Sbjct: 21 MISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLD 55
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central
glycolytic G regulator, transcription; 1.95A {Bacillus
subtilis} PDB: 3fwr_A* 3fws_A*
Length = 159
Score = 47.7 bits (114), Expect = 1e-06
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
+ P + ++ S+ + + VV+ + +VG+++RKDL R
Sbjct: 24 SIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLR 70
Score = 39.2 bits (92), Expect = 6e-04
Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 395 DLV--VSENDRSFTVKLNLFMNTSP--FSVQDSTSLPRVFKLFRALGLRHVVVVNNNN-- 448
DL+ +V +++ M P + + + K + + V+ + +
Sbjct: 67 DLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKG 126
Query: 449 -HVVGMITRKDLARYRV 464
V+G +T+ ++ + V
Sbjct: 127 FEVIGRVTKTNMTKILV 143
Score = 27.3 bits (61), Expect = 7.1
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 211 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
+ + +S PV+ + +V + I + +VD
Sbjct: 15 KKLQVKDFQSIPVV-IHENVSVYDAICTMFLEDVGTLFVVD 54
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 46.4 bits (111), Expect = 1e-06
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
++ P + + S+ K+ + H+ +V+ + +VG+IT D+A+
Sbjct: 6 ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKA 56
Score = 46.4 bits (111), Expect = 2e-06
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 395 DLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMI 454
D+ + T++ M + + + + V + V VV++ VVG++
Sbjct: 52 DIAKALAQNKKTIEE--IMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIV 109
Query: 455 TRKDLARY 462
T +D++R
Sbjct: 110 TSEDISRL 117
Score = 30.6 bits (70), Expect = 0.35
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 220 SHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
S P I ++ +L + N PIVD
Sbjct: 8 SKPPITAHSNISIMEAAKILIKHNINHLPIVD 39
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 46.4 bits (111), Expect = 1e-06
Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 397 VVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR 456
+ ++ M V + + L + +RH+ V+++ V+G+++
Sbjct: 64 SYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSI 122
Query: 457 KDLARYRVWRH 467
DL + + +H
Sbjct: 123 GDLVKDAISQH 133
Score = 40.3 bits (95), Expect = 3e-04
Identities = 8/57 (14%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGG 469
+ ++ S+ + A + ++V+ + +VG++T +D +R + +
Sbjct: 15 KGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE-KLVGILTERDFSR-KSYLLDK 69
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 47.1 bits (112), Expect = 5e-06
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
M +P ++ + +LF+ +R VVN +VG+I+ K +
Sbjct: 7 MTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILV 55
Score = 46.7 bits (111), Expect = 8e-06
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR 466
+L + + V+++ +L + KL R VVVV++ VG++T D+ R +
Sbjct: 61 QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK 119
Score = 40.2 bits (94), Expect = 0.001
Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 392 SVNDLV---VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN 448
+V D++ +++++ V++ + V + T L K + VV++
Sbjct: 108 TVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEG 167
Query: 449 HVVGMITRKDLARY 462
++VG++ DL R
Sbjct: 168 NLVGIVDETDLLRD 181
Score = 39.8 bits (93), Expect = 0.001
Identities = 7/51 (13%), Positives = 16/51 (31%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
M ++ V + + V+ ++G+I DL +
Sbjct: 226 IMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV 276
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 45.5 bits (108), Expect = 6e-06
Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 400 ENDRSFTVKLNLFMNTS--PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRK 457
E++ + + F+ + VQ L + G + V++ + + G+I+
Sbjct: 4 EHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMT 63
Query: 458 DLARYRVWRHGGRM-GLEELKIS 479
+ + LE +K+
Sbjct: 64 MMMDAILGLERIEFERLETMKVE 86
Score = 45.1 bits (107), Expect = 7e-06
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 33/116 (28%)
Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
+L GLI + ++ I E + + + V E
Sbjct: 54 YKLHGLISMTMMM--------------------DAILGLERIEFERLETMKVEE------ 87
Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
MN + ++ SL + L + V V N++ + G+ TR+++ +
Sbjct: 88 -----VMNRNIPRLRLDDSLMKAVGLI--VNHPFVCVENDDGYFAGIFTRREVLKQ 136
Score = 29.7 bits (67), Expect = 1.1
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 220 SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE 253
+ V ++P + + + VL T ++ P++D
Sbjct: 20 ADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS 53
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 44.3 bits (105), Expect = 1e-05
Identities = 11/61 (18%), Positives = 23/61 (37%)
Query: 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKI 478
+ D+ + L + V VV + VG I +D+ Y++ + + + I
Sbjct: 29 VLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDI 88
Query: 479 S 479
Sbjct: 89 V 89
Score = 43.9 bits (104), Expect = 2e-05
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 400 ENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRH--VVVVNNNNHVVGMITRK 457
+ + T V ++ V + + VV+ G+ITRK
Sbjct: 79 SQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKL----VDESFLPVVDAEGIFQGIITRK 134
Query: 458 DLARY 462
+ +
Sbjct: 135 SILKA 139
Score = 29.6 bits (67), Expect = 1.4
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 220 SHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
+ + L + +L ++ P+V
Sbjct: 24 AKNLAVLIDTHNADHATLLLSQMTYTRVPVVT 55
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 44.4 bits (105), Expect = 1e-05
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
M T + + + + F + + V V N+ G+ TR+ + +
Sbjct: 91 VMLTDIPRLHINDPIMKGFGMV--INNGFVCVENDEQVFEGIFTRRVVLKE 139
Score = 43.6 bits (103), Expect = 2e-05
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRM-GLEELK 477
VQ +L + G + V++ + + G+I + L+++
Sbjct: 28 HVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQIT 87
Query: 478 IS 479
+
Sbjct: 88 VE 89
Score = 28.2 bits (63), Expect = 4.2
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 217 IVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
++++ V ++ + + + VL T + P++D
Sbjct: 20 MIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD 54
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 43.4 bits (101), Expect = 8e-05
Identities = 31/261 (11%), Positives = 76/261 (29%), Gaps = 27/261 (10%)
Query: 210 SSNITARI--VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSS 267
S + ++ ++ + L P ++ ++++ + P+ D
Sbjct: 2 SHMVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVAD-----------GNNHL 50
Query: 268 AGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQ 327
G + ++ A S ++ + I + K++ Q
Sbjct: 51 LGMLSTSNITATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQ 110
Query: 328 LSSEIFHAEYRCRPRIWSPGRLVGLILRSQLII-LIKHK---IYKENQNWPDDQLSSEIF 383
S G + R+++ LI+ K + + P ++
Sbjct: 111 AESLKEFIS---------EGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAK 161
Query: 384 HAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT-SPFSVQDSTSLPRVFKLFRALGLRHVV 442
+ +D + ++ ++ M + +V + V +
Sbjct: 162 KNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYP 221
Query: 443 VVNNNNHVVGMITRKDLARYR 463
V++ NN VVG I R L
Sbjct: 222 VIDENNKVVGSIARFHLISTH 242
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
2oox_G* 2ooy_G*
Length = 334
Score = 41.8 bits (98), Expect = 3e-04
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 29/116 (25%)
Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
G L+ + ++ LI+ Y L + A R + + + T
Sbjct: 226 GTLLNVYESVDVMHLIQDGDY--------SNLDLSVGEALLKRPANFDGVH--------T 269
Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
+ L +F + + + VV+ N + G+++ D+ Y
Sbjct: 270 CRAT-------------DRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNY 312
Score = 40.6 bits (95), Expect = 8e-04
Identities = 7/52 (13%), Positives = 22/52 (42%)
Query: 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
++ + ++ + T + V K+ + V +VN+ ++ + D+
Sbjct: 186 QMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDV 237
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 4e-04
Identities = 69/573 (12%), Positives = 145/573 (25%), Gaps = 172/573 (30%)
Query: 2 KHAVQMYCGDG---EYNTLAALWLQVPEKSVRTMLHDPKGAFGVF---------SLSVFV 49
+ VQ + + Y +L ++T P ++ VF
Sbjct: 76 EEMVQKFVEEVLRINYK-----FLM---SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 50 ---VT----YFLLSVWTYGVSVSGG----GMP------------EKYDFLSK--DNV-WK 83
V+ Y L + + G+ Y K + W
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 84 SNGK---PRSLSEQLSD-------------SGGVFIPCLLTGAAWGRLFSLFLQSIFPEA 127
+ P ++ E L I L + L L +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENC 246
Query: 128 ---------TWI----DPGKYALI-----GAAAQLGGVVRMTISLTIILIEATGNISFGL 169
+ L+ L ISL +++
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH------SMTLTP 300
Query: 170 PLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHP------- 222
+ +L+ K++ + +P P +I A ++
Sbjct: 301 DEVKSLL-LKYLD-----------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 223 -VICLRPLETVGNIIDVLKATSHNG-------FPI-VDVEPMT------KHSSDGAEQSS 267
V C + + + ++VL+ + FP + +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 268 AGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIK---HKI----YKEN 320
+ HK S + KES + + L ++ + + H+ Y
Sbjct: 409 ---------NKLHKY-SLVEKQ--PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 321 QNWPDDQLSSE-----IF-----HAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKEN 370
+ + D L + H + P + R+V L R ++ KI ++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-----FLEQKIRHDS 511
Query: 371 QNWPDDQLSSEIFH--AEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPR 428
W Y Y + +ND + +N ++ F + +L
Sbjct: 512 TAWNASGSILNTLQQLKFYKPY-------ICDNDPKYERLVNAILD---FLPKIEENLIC 561
Query: 429 VFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
+ L + ++ + + K + R
Sbjct: 562 ----SKYTDLLRIALMAEDEAIFEE-AHKQVQR 589
Score = 41.4 bits (96), Expect = 6e-04
Identities = 39/291 (13%), Positives = 84/291 (28%), Gaps = 110/291 (37%)
Query: 211 SNITARIVKSHPVICLRPLE----TVGN------IIDVLKATSHNGFPIVDVEPMTKHSS 260
+ + + S+ V C + + N ++++L+ + + + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---------IDPNWT 214
Query: 261 DGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKEN 320
++ SS H +R K + L++L
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSK---PYENC------------LLVL--------- 250
Query: 321 QNWPDDQLSSEIFHA-EYRCRPRIWSPGRLVGLIL---RSQLIILIKHKIYKENQNWPDD 376
+ +++ ++A C+ IL R + + D
Sbjct: 251 ----LNVQNAKAWNAFNLSCK------------ILLTTRFKQVT---------------D 279
Query: 377 QLSSEIFHAEYPRYPSVNDLVVSENDRSFTVK--LNLFMNTSPFSVQDSTSLPRVFKLFR 434
LS+ + + + + + T +L + QD LPR
Sbjct: 280 FLSAA----------TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD---LPRE----- 321
Query: 435 ALGLRHVVVVNNNNHVVGMI---TRKDLARYRVWRHGGRMGLEELKISSTL 482
V+ N + +I R LA + W+H L + I S+L
Sbjct: 322 --------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSL 363
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 7e-04
Identities = 98/610 (16%), Positives = 162/610 (26%), Gaps = 260/610 (42%)
Query: 28 SVR--TMLHDPKGAFGVFSLSVFVVT--YFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWK 83
S R T+ H G + V T +F+ S + +PE + + D+
Sbjct: 5 STRPLTLSH------GSLEHVLLVPTASFFIASQLQEQFNKI---LPEPTEGFAADD--- 52
Query: 84 SNGKPRSLSEQLS------------DSGGVFIPCLLTGAAWGRLFSLFLQ---------S 122
+P + +E + G F L + +L+
Sbjct: 53 ---EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN--LCLTEFENCYLEGNDIHALAAK 107
Query: 123 IFPEATWIDPGKYALIGA---AAQLGG--VVRMTISLTIILIEA--TGNIS----FGLPL 171
+ E LI A + + + S L A GN FG
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA---LFRAVGEGNAQLVAIFG--- 161
Query: 172 MLTLITAKWIG-----DFFTE--GLYDIH-------IQLS-------------------- 197
G D+F E LY + I+ S
Sbjct: 162 ----------GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 198 GIPLLAW--DP---PPLSSNITARIVKSHPVICL---------------RPLE------- 230
G+ +L W +P P ++ I S P+I + P E
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPI--SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 231 TVGNIIDVLKAT----------------------------SHNGFPIVDVEP-MTKHSSD 261
G+ ++ A + +P + P + + S +
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 262 GAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV-GLILRSQLIILIKHKIYKEN 320
E G SP + L + Q+ + K N
Sbjct: 330 NNE-----------------------GVP----SPMLSISNL-TQEQVQDYVN----KTN 357
Query: 321 QNWP-DDQLSSEIFHAEYRCRPRIW----SPGRLVGLILRSQLIILIKHKI-YKENQN-W 373
+ P Q+ + + + P L GL L L K K +Q+
Sbjct: 358 SHLPAGKQVEISLVNG-----AKNLVVSGPPQSLYGLNLT-----LRKAKAPSGLDQSRI 407
Query: 374 PDDQ----LSSE---I---FHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDS 423
P + S+ + FH+ +DL+ + L N F+ +D
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHL--LVPASDLINKD----------LVKNNVSFNAKD- 454
Query: 424 TSLPRVFKLFRALGLRHVV--VVNNNNHVVGMITRKDLARYRV-W--------RH----- 467
+P V+ F LR + + +V I R V W H
Sbjct: 455 IQIP-VYDTFDGSDLRVLSGSISER---IVDCIIRL-----PVKWETTTQFKATHILDFG 505
Query: 468 -GGRMGLEEL 476
GG GL L
Sbjct: 506 PGGASGLGVL 515
Score = 35.8 bits (82), Expect = 0.043
Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 45/139 (32%)
Query: 166 SFGLPLMLTLITA-------KWIGDFFTEGLYDIHIQLSG----IPLL----AWDPPPLS 210
F LP + + D + L ++ + IP+ D LS
Sbjct: 419 RF-LP-----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 211 SNITARIVKSHPVICLRPL--ETVGNIIDVLKATSHNGFPIVD--------VEPMTKHSS 260
+I+ RIV I P+ ET KAT H I+D + +T +
Sbjct: 473 GSISERIV---DCIIRLPVKWETT----TQFKAT-H----ILDFGPGGASGLGVLTHRNK 520
Query: 261 DG--AEQSSAGSTDSHKGD 277
DG AG+ D + D
Sbjct: 521 DGTGVRVIVAGTLDINPDD 539
Score = 28.1 bits (62), Expect = 9.6
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 21/43 (48%)
Query: 12 GEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLS--VFVVTY 52
GEY LA+L A V S+ V VV Y
Sbjct: 1765 GEYAALASL------------------A-DVMSIESLVEVVFY 1788
>3fio_A A cystathionine beta-synthase domain protein fused to A
Zn-ribbon-like domain; PF1953,APC40009,cystathionine
beta-synthase domain protein; 1.81A {Pyrococcus
furiosus} PDB: 3ghd_A
Length = 70
Score = 33.7 bits (78), Expect = 0.011
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464
VQ ++ RV K+ VV+ + ++G++T +D+ +V
Sbjct: 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGD-EILGVVTERDILD-KV 47
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+
transporter, structural GE PSI-2, protein structure
initiative; 2.41A {Shewanella oneidensis mr-1}
Length = 205
Score = 36.0 bits (84), Expect = 0.015
Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 392 SVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV 451
D+ E L ++ ++ +T+L + + V+++ ++
Sbjct: 105 RRYDIFKHEPH----EPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELI 160
Query: 452 GMIT 455
G +T
Sbjct: 161 GRVT 164
Score = 27.5 bits (62), Expect = 7.3
Identities = 8/50 (16%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRH---VVVVNNNNHVVGMITRKDL 459
+ + D ++ + + FR + L + +V+ + +G + R D+
Sbjct: 60 TDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDI 109
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 36.5 bits (85), Expect = 0.020
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 392 SVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV 451
S+ DL+V++ ++ MN V+ T V +L + VV+ +V
Sbjct: 208 SLRDLIVADPR----TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLV 263
Query: 452 GMIT 455
G++T
Sbjct: 264 GIVT 267
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P
structure initiative, nysgxrc; 2.16A {Enterococcus
faecalis} SCOP: a.118.26.1 d.37.1.1
Length = 286
Score = 36.1 bits (84), Expect = 0.020
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 392 SVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV 451
S+ DL+V+++D + +N SV V + R V V + ++H++
Sbjct: 190 SLRDLIVNDDD----TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLL 245
Query: 452 GMIT 455
G++T
Sbjct: 246 GIVT 249
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein;
2.30A {Thermus thermophilus} PDB: 2yvz_A
Length = 278
Score = 35.3 bits (82), Expect = 0.036
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 392 SVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV 451
S+ DL+V++ ++ MN V+ T V +L + VV+ +V
Sbjct: 188 SLRDLIVADPR----TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLV 243
Query: 452 GMIT 455
G++T
Sbjct: 244 GIVT 247
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 32.5 bits (75), Expect = 0.35
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 443 VVNNNNHVVGMITRKDL 459
+VN+ + +V +I R DL
Sbjct: 211 IVNDCDELVAIIARTDL 227
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 32.2 bits (74), Expect = 0.44
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 420 VQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKD 458
T L K+ L + +++++ H+ ++ RKD
Sbjct: 176 AHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKD 214
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X
1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z
1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W*
3pip_W*
Length = 55
Score = 28.2 bits (64), Expect = 0.64
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 434 RALGLR---HVVVVNNNNHVVGMI 454
+ALGLR V++ V GM+
Sbjct: 21 QALGLRKIGDSREVSDTPAVRGMV 44
>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z*
2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y*
2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ...
Length = 58
Score = 28.2 bits (64), Expect = 0.80
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 434 RALGLR---HVVVVNNNNHVVGMI 454
LGLR H V + + GMI
Sbjct: 24 LGLGLRRIGHTVEREDTPAIRGMI 47
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 30.9 bits (71), Expect = 0.88
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 21/64 (32%)
Query: 134 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 183
K ++G A +L + + I E ISF G+ L ++
Sbjct: 2 KVIVLGSSHGGYEAVEEL---LNLHPDAEIQWYEKGDFISFLSAGMQL--------YLEG 50
Query: 184 FFTE 187
+
Sbjct: 51 KVKD 54
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 30.9 bits (71), Expect = 0.90
Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 21/64 (32%)
Query: 134 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 183
K +IG AA + I LI+ + + GL +
Sbjct: 4 KIVIIGASFAGISAAIAS---RKKYPQAEISLIDKQATVGYLSGGLSA--------YFNH 52
Query: 184 FFTE 187
E
Sbjct: 53 TINE 56
>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography,
conformational changes, ribosome; 1.90A {Thermus
thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X
1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2
2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3
2wdl_3 ...
Length = 60
Score = 28.2 bits (64), Expect = 0.90
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 434 RALGLR---HVVVVNNNNHVVGMI 454
+ALGLR V+ + + G +
Sbjct: 24 KALGLRRLQQERVLEDTPAIRGNV 47
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 30.5 bits (70), Expect = 1.1
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 21/64 (32%)
Query: 134 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 183
K ++G A Q + + E NISF G+ L ++G
Sbjct: 2 KVIVVGCTHAGTFAVKQT---IADHPDADVTAYEMNDNISFLSCGIAL--------YLGK 50
Query: 184 FFTE 187
Sbjct: 51 EIKN 54
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 30.5 bits (70), Expect = 1.3
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 21/64 (32%)
Query: 134 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 183
K ++G A+Q+ R+ II+ E ++SF LP IG+
Sbjct: 3 KIVVVGAVAGGATCASQI---RRLDKESDIIIFEKDRDMSFANCALPY--------VIGE 51
Query: 184 FFTE 187
+
Sbjct: 52 VVED 55
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 30.5 bits (70), Expect = 1.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
+ T P +V+ ++ V +L G VV NN +VG+IT +D+
Sbjct: 95 VVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV 141
Score = 30.1 bits (69), Expect = 1.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 420 VQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKD 458
V++ + V + + ++VVN+ + GMIT KD
Sbjct: 164 VKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKD 202
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 30.2 bits (69), Expect = 1.5
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
+ P +V ++ L + + VV+ +VG++T +D+
Sbjct: 101 IIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV 147
Score = 29.8 bits (68), Expect = 2.4
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 420 VQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKD 458
SL + ++ + + +V+ +N +VG+IT KD
Sbjct: 170 APPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKD 208
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 30.2 bits (69), Expect = 1.6
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 21/64 (32%)
Query: 134 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 183
Y +IG AA Q+ VR + ++ +E S+ GLP I
Sbjct: 38 NYVIIGGDAAGMSAAMQI---VRNDENANVVTLEKGEIYSYAQCGLPY--------VISG 86
Query: 184 FFTE 187
Sbjct: 87 AIAS 90
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 30.3 bits (69), Expect = 1.9
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 21/64 (32%)
Query: 134 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 183
K ++G AA+L R++ II++E ISF GLP +IG
Sbjct: 38 KIVVVGGVAGGASVAARL---RRLSEEDEIIMVERGEYISFANCGLPY--------YIGG 86
Query: 184 FFTE 187
TE
Sbjct: 87 VITE 90
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 30.2 bits (69), Expect = 1.9
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 420 VQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
V +S + K+ + + VV+ +VG+IT DL
Sbjct: 163 VPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDL 202
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 29.9 bits (68), Expect = 2.2
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 21/64 (32%)
Query: 134 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 183
K +IG AAA+ R++ + II+ E +SF GLP I
Sbjct: 3 KILIIGGVAGGASAAARA---RRLSETAEIIMFERGEYVSFANCGLPY--------HISG 51
Query: 184 FFTE 187
+
Sbjct: 52 EIAQ 55
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 29.8 bits (68), Expect = 2.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 420 VQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKD 458
T+L K+ + + + +V+NN + G+IT KD
Sbjct: 189 APVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKD 227
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 29.4 bits (67), Expect = 2.5
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 21/64 (32%)
Query: 134 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 183
+IG AA + R+ + +I+ IS+ G+P ++
Sbjct: 5 HVVVIGAVALGPKAACRF---KRLDPEAHVTMIDQASRISYGGCGIPY--------YVSG 53
Query: 184 FFTE 187
+
Sbjct: 54 EVSN 57
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 29.4 bits (67), Expect = 2.8
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 420 VQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKD 458
T L ++ + + +V+N+ + G+IT KD
Sbjct: 166 AAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKD 204
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS
domain, structural genomics, PSI-2, P structure
initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae
subsp} PDB: 3fna_A*
Length = 149
Score = 28.2 bits (64), Expect = 3.6
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 437 GLRHVVVVNNNNHVVGMITRKDLAR 461
L + +++ +++G+ T DL R
Sbjct: 60 NLGMTAICDDDMNIIGIFTDGDLRR 84
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli
K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A
2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Length = 366
Score = 29.0 bits (66), Expect = 3.9
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 444 VNNNNHVVGMITRKDLARYRV-WR 466
+ N G+IT++DLA Y+ R
Sbjct: 231 MQKNG---GLITKEDLAAYKAVER 251
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 28.8 bits (65), Expect = 3.9
Identities = 8/51 (15%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 410 NLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN-HVVGMITRKDL 459
L + P ++ ++ L + + + VV+ ++ V+G++ ++ L
Sbjct: 388 ELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETL 438
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain;
LCMV, MHC class I, immune escape, immune system; 1.99A
{Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A
1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A
1nez_A*
Length = 348
Score = 29.0 bits (65), Expect = 3.9
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 187 EGLYDIHIQLSGIP---LLAWDPPPLSSNITARIV 218
E Y H+ G+P L W+PPP + + A +
Sbjct: 254 EQYYTCHVYHQGLPEPLTLRWEPPPSTVSNMATVA 288
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein;
peptide-MHC complex, immunoglobulin fold system; 2.70A
{Synthetic}
Length = 443
Score = 29.0 bits (65), Expect = 4.1
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 187 EGLYDIHIQLSGIP---LLAWDPPPLSSNITARIV 218
E Y H+ G+P L W + +
Sbjct: 399 EQNYTCHVHHKGLPEPLTLRWAAAGGTGGLNDIFE 433
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 28.6 bits (65), Expect = 4.5
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 21/61 (34%)
Query: 134 KYALIG-------AAAQLGGVVRMTISLTIILIEATGNISF---GLPLMLTLITAKWIGD 183
K +IG AA+++ R+ + + EAT +S G+P +
Sbjct: 5 KVVIIGGGAAGMSAASRV---KRLKPEWDVKVFEATEWVSHAPCGIPY--------VVEG 53
Query: 184 F 184
Sbjct: 54 L 54
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET:
GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A*
2nqo_A
Length = 377
Score = 28.7 bits (65), Expect = 4.7
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 444 VNNNNHVVGMITRKDLARYRV-WR 466
+ N G+IT++DLA Y V WR
Sbjct: 242 MKKNG---GIITKEDLASYNVKWR 262
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione
biosynthesis, gamma-glutamyl transferase,
acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB:
3a75_A*
Length = 376
Score = 28.3 bits (64), Expect = 5.4
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 444 VNNNNHVVGMITRKDLARYRV-WR 466
V + G +T KDL Y +
Sbjct: 227 VQDFG---GSMTEKDLENYDITID 247
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 28.3 bits (64), Expect = 5.9
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 18/63 (28%)
Query: 134 KYALIGAAAQLGGVVRMTI------SLTIILIEATGNISF---GLPLMLTLITAKWIGDF 184
K ++GA G T+ + I++ + NISF G+ L WIG+
Sbjct: 37 KIVVVGANH-AGTACIKTMLTNYGDANEIVVFDQNSNISFLGAGMAL--------WIGEQ 87
Query: 185 FTE 187
Sbjct: 88 IAG 90
>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP,
post-translational PROC maturation, transferase; 2.55A
{Escherichia coli K12} SCOP: d.153.1.6
Length = 556
Score = 27.9 bits (63), Expect = 9.7
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 444 VNNNNHVVGMITRKDLARYRV-WR 466
+ N G+IT++DLA Y+ R
Sbjct: 231 MQKNG---GLITKEDLAAYKAVER 251
>1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold,
structural genomics, PSI, P structure initiative; 2.00A
{Bacillus halodurans} SCOP: d.108.1.1
Length = 153
Score = 27.0 bits (60), Expect = 9.9
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 418 FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELK 477
+ S R FK + ++V N +VGM+ Y ++ R +E ++
Sbjct: 34 YEKPLPVSYVRAFKEIKKDKNNELIVACNGEEIVGMLQ-VTFTPYLTYQGSWRATIEGVR 92
Query: 478 ISS 480
S
Sbjct: 93 THS 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.419
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,452,013
Number of extensions: 448187
Number of successful extensions: 1099
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1055
Number of HSP's successfully gapped: 163
Length of query: 482
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 385
Effective length of database: 3,993,456
Effective search space: 1537480560
Effective search space used: 1537480560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)