RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15912
(482 letters)
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 102 bits (256), Expect = 3e-24
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 98 SGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTII 157
GG+F P L G G F + +FP+ ++ G +A+ G A L +R ++ I+
Sbjct: 337 PGGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIIL 395
Query: 158 LIEATGNISFGLPLMLTLITAKWIGDFF-TEGLYDIHIQ 195
++E T N LP+++T + A + F + LY +
Sbjct: 396 VLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILA 434
>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 52.6 bits (125), Expect = 1e-08
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
RLVG +LR LII I++ K++ S F P P T
Sbjct: 52 QRLVGFVLRRDLIISIENARKKQDGVVST---SIIYFTEHSPPLPPYTPP---------T 99
Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
+KL ++ SPF+V D T + V +FR LGLR +V +N ++G+IT+KD+ ++
Sbjct: 100 LKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVLKH 154
Score = 26.4 bits (57), Expect = 5.9
Identities = 17/149 (11%), Positives = 44/149 (29%), Gaps = 9/149 (6%)
Query: 214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDS 273
R + + TV ++ ++ T+++GF P+ D
Sbjct: 10 KPRRNDPLLTVLTQDSMTVEDVETIISETTYSGF------PVVVSRESQRLVGFVLRRDL 63
Query: 274 HKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIF 333
+ ++ S L + + +++ + D +
Sbjct: 64 IISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVV 123
Query: 334 HAEYRCRPR---IWSPGRLVGLILRSQLI 359
+ R + GRL+G+I + ++
Sbjct: 124 DIFRKLGLRQCLVTHNGRLLGIITKKDVL 152
>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase
subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 50.2 bits (119), Expect = 4e-08
Identities = 12/111 (10%), Positives = 36/111 (32%)
Query: 358 LIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSP 417
L I ++H++ ++ + + + + ++
Sbjct: 35 LGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGV 94
Query: 418 FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHG 468
+L + + +VVV+ ++ V G+++ D+ + V G
Sbjct: 95 LKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTGG 145
>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate
dehydrogenase CBS domains {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 120
Score = 47.1 bits (111), Expect = 3e-07
Identities = 11/66 (16%), Positives = 26/66 (39%)
Query: 398 VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRK 457
+ E + ++ + +L ++ + + +VN N+ +V +I R
Sbjct: 54 LKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIART 113
Query: 458 DLARYR 463
DL + R
Sbjct: 114 DLKKNR 119
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE
{Enterococcus faecalis [TaxId: 1351]}
Length = 127
Score = 45.5 bits (107), Expect = 9e-07
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 405 FTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
+ +N SV V + R V V + ++H++G++T D+
Sbjct: 63 DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIID 119
>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 44.0 bits (103), Expect = 5e-06
Identities = 10/91 (10%), Positives = 27/91 (29%)
Query: 374 PDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLF 433
+ L + + + ++ + L +
Sbjct: 48 ENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNI 107
Query: 434 RALGLRHVVVVNNNNHVVGMITRKDLARYRV 464
R + VV++ +VG++T D+ +Y +
Sbjct: 108 RKARVHRFFVVDDVGRLVGVLTLSDILKYIL 138
>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga
maritima [TaxId: 2336]}
Length = 145
Score = 44.2 bits (103), Expect = 5e-06
Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 3/104 (2%)
Query: 359 IILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPF 418
+ + L FH + + + P
Sbjct: 38 TVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNAS---EIMLDPV 94
Query: 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
V T L KL ++ + VV+ +VG + ++
Sbjct: 95 YVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLA 138
Score = 25.7 bits (55), Expect = 7.9
Identities = 13/142 (9%), Positives = 37/142 (26%), Gaps = 14/142 (9%)
Query: 218 VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGD 277
+ S + + I+D + V +
Sbjct: 9 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVG-------------MIPVMH 55
Query: 278 TSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEY 337
G ++E + ++ ++ +Y ++ L I +
Sbjct: 56 LLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDN-NI 114
Query: 338 RCRPRIWSPGRLVGLILRSQLI 359
+ P + G +VG + +++
Sbjct: 115 QEMPVVDEKGEIVGDLNSLEIL 136
>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein,
CBS tandem {Marbled electric ray (Torpedo marmorata)
[TaxId: 7788]}
Length = 160
Score = 44.3 bits (103), Expect = 5e-06
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 386 EYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVN 445
E ++ SPF + + TSL + LF LGL V +
Sbjct: 82 EEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS 141
Query: 446 NNNHVVGMITRKDLAR 461
+VG++ ++
Sbjct: 142 MG-KLVGVVALAEIQA 156
>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 153
Score = 42.6 bits (99), Expect = 2e-05
Identities = 10/64 (15%), Positives = 26/64 (40%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRM 471
+ + + L +F + + + VV+ N + G+++ D+ Y ++
Sbjct: 81 ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTP 140
Query: 472 GLEE 475
G+ E
Sbjct: 141 GVPE 144
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 156
Score = 42.3 bits (98), Expect = 2e-05
Identities = 11/106 (10%), Positives = 25/106 (23%)
Query: 359 IILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPF 418
+ E + E+ L + + M
Sbjct: 51 VDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVI 110
Query: 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464
++ V + + V+ ++G+I DL + V
Sbjct: 111 VATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156
Score = 35.4 bits (80), Expect = 0.005
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKD 458
V++ + V + T L K + VV++ ++VG++ D
Sbjct: 4 VEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETD 55
Score = 32.7 bits (73), Expect = 0.041
Identities = 19/150 (12%), Positives = 35/150 (23%), Gaps = 2/150 (1%)
Query: 212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGST 271
+ V + + + L ++ P+VD E D +
Sbjct: 3 GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 62
Query: 272 DSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE 331
T S + + + +
Sbjct: 63 VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVA 122
Query: 332 IFHAEYRCR--PRIWSPGRLVGLILRSQLI 359
+ A+Y P I G L+GLI L+
Sbjct: 123 LKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 152
>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus
thermophilus [TaxId: 274]}
Length = 144
Score = 41.3 bits (96), Expect = 4e-05
Identities = 12/62 (19%), Positives = 22/62 (35%)
Query: 401 NDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460
++ MN V+ T V +L + VV+ +VG++T D+
Sbjct: 59 IVADPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 118
Query: 461 RY 462
Sbjct: 119 DV 120
>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 159
Score = 41.3 bits (96), Expect = 5e-05
Identities = 5/51 (9%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN-NNHVVGMITRKDLARY 462
+ + SL + + V++ + + + ++T K + ++
Sbjct: 102 SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF 152
>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398
{Nitrosomonas europaea [TaxId: 915]}
Length = 127
Score = 39.7 bits (92), Expect = 1e-04
Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 401 NDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460
+ ++ M V + + L + +RH+ V+++ V+G+++ DL
Sbjct: 64 DKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 122
Query: 461 RYRV 464
+ +
Sbjct: 123 KDAI 126
>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem
{Thermotoga maritima [TaxId: 2336]}
Length = 121
Score = 39.5 bits (91), Expect = 1e-04
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464
++ F V + ++ LF ++ VV+ + G ++ D +
Sbjct: 65 KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI 117
Score = 32.2 bits (72), Expect = 0.040
Identities = 8/56 (14%), Positives = 21/56 (37%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRH 467
++ V++S ++ R +V + H G++ ++DL +
Sbjct: 6 WVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSS 61
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 142
Score = 39.9 bits (92), Expect = 1e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 429 VFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
V GL VV++ VVG++T DL+RY
Sbjct: 91 VAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY 124
>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 122
Score = 39.1 bits (90), Expect = 2e-04
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464
+ V+++ +L + KL R VVVV++ VG++T D+ R
Sbjct: 65 LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYF 117
>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 135
Score = 38.8 bits (89), Expect = 3e-04
Identities = 10/81 (12%), Positives = 27/81 (33%)
Query: 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHV 441
+ + T + +M +P +V +++ + +
Sbjct: 49 RDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSL 108
Query: 442 VVVNNNNHVVGMITRKDLARY 462
VV+ N+ VG++T ++
Sbjct: 109 PVVDINDKPVGIVTEREFLLL 129
Score = 26.5 bits (57), Expect = 4.3
Identities = 9/61 (14%), Positives = 16/61 (26%)
Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMG 472
M +P + L FK G+ ++V N + + G
Sbjct: 7 MIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQG 66
Query: 473 L 473
Sbjct: 67 D 67
>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 127
Score = 38.7 bits (89), Expect = 3e-04
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 430 FKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
L R +RH+ VV++ ++ G+I+ +D+ R
Sbjct: 90 LALMRQFNIRHLPVVDDKGNLKGIISIRDITRA 122
>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072
{Pyrobaculum aerophilum [TaxId: 13773]}
Length = 131
Score = 38.0 bits (87), Expect = 5e-04
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 437 GLRHVVVVNNNNHVVGMITRKDLARYRV 464
+RHVVVVN N +VG+++ +DL R
Sbjct: 96 NIRHVVVVNKNGELVGVLSIRDLCFERA 123
>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 123
Score = 36.8 bits (84), Expect = 0.001
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
S + V + S+ + + +R V V++ + +VG++T D+AR+
Sbjct: 72 LARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIARH 121
Score = 30.6 bits (68), Expect = 0.17
Identities = 9/55 (16%), Positives = 23/55 (41%)
Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRH 467
MN V + +L + R + + + +++ + GM+T +D+ +
Sbjct: 7 MNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAG 61
Score = 29.1 bits (64), Expect = 0.53
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH 258
TAR + + V C+ ET+ ++ PI +
Sbjct: 2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHG 46
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 36.7 bits (84), Expect = 0.001
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
M + + +T L V + ++H+++ +VG+ T DL
Sbjct: 75 IMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLLE 123
Score = 31.7 bits (71), Expect = 0.070
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRH 467
+M V+ STS+ +L + +VV+N++ +VVG T+ D+ R +
Sbjct: 10 YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPG 65
>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 179
Score = 37.3 bits (85), Expect = 0.001
Identities = 6/63 (9%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 405 FTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN-----NNHVVGMITRKDL 459
+ + V SL R + +++ + +V ++T+ +
Sbjct: 105 EVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRI 164
Query: 460 ARY 462
++
Sbjct: 165 LKF 167
>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate
dehydrogenase CBS domains {Streptococcus pyogenes
[TaxId: 1314]}
Length = 126
Score = 36.0 bits (82), Expect = 0.002
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 421 QDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463
T L ++ + + +V+N+ + G+IT KD+ +
Sbjct: 74 AVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI 116
>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 120
Score = 35.6 bits (81), Expect = 0.003
Identities = 5/36 (13%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 429 VFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464
+ + ++V ++ ++G+I+ D+ R ++
Sbjct: 86 AAEKMVKNVVWRLLVEEDD-EIIGVISATDILRAKM 120
Score = 28.3 bits (62), Expect = 0.84
Identities = 11/55 (20%), Positives = 17/55 (30%)
Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRH 467
M T ++ + SL V + + VVV V + T L
Sbjct: 6 MVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDD 60
>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 141
Score = 35.0 bits (79), Expect = 0.005
Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 356 SQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT 415
Q + L+ + ++ DD I + + D + + M T
Sbjct: 22 DQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVT 81
Query: 416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEE 475
+ ++ + S+ R + ++++N +N + G+IT +DL + +E+
Sbjct: 82 NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALH----HILVMEK 137
Query: 476 LK 477
K
Sbjct: 138 FK 139
Score = 25.7 bits (55), Expect = 8.9
Identities = 14/150 (9%), Positives = 40/150 (26%), Gaps = 22/150 (14%)
Query: 220 SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTS 279
S V + + + ++ P++D + +
Sbjct: 9 STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGI--------------VTVVNA 54
Query: 280 HKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRC 339
K+ + G++V ++ + L+ + + +
Sbjct: 55 IKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVK--------RIGS 106
Query: 340 RPRIWSPGRLVGLILRSQLIILIKHKIYKE 369
+ + G+I L+I + H + E
Sbjct: 107 LLILNKDNTIRGIITERDLLIALHHILVME 136
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 34.8 bits (79), Expect = 0.014
Identities = 16/101 (15%), Positives = 32/101 (31%)
Query: 358 LIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSP 417
I+ E + + E R V + ++ +DRS + L
Sbjct: 88 AEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDL 147
Query: 418 FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKD 458
S K+F+ + R ++ + +G + KD
Sbjct: 148 ALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKD 188
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio
cholerae [TaxId: 666]}
Length = 139
Score = 33.7 bits (76), Expect = 0.015
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464
M+T SV L + + + VV + +VG+IT D +
Sbjct: 80 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFVTIAI 131
>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus
subtilis [TaxId: 1423]}
Length = 132
Score = 32.7 bits (73), Expect = 0.029
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 439 RHVVVVNNNNHVVGMITRKDLARY 462
V V N+ G+ TR+ + +
Sbjct: 104 GFVCVENDEQVFEGIFTRRVVLKE 127
>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli
[TaxId: 562]}
Length = 79
Score = 28.8 bits (65), Expect = 0.27
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 136 ALIGAAAQ--LGGVVRMTISLTIILIEATGNISFGLPLMLTLITA 178
L GAA Q L ++R + + L++A I+ GL L + A
Sbjct: 35 FLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA 79
>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30
{Escherichia coli [TaxId: 562]}
Length = 56
Score = 27.2 bits (61), Expect = 0.67
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 434 RALGLR---HVVVVNNNNHVVGMITR-KDL 459
LGLR H V + + GMI +
Sbjct: 22 LGLGLRRIGHTVEREDTPAIRGMINAVSFM 51
>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus
thermophilus [TaxId: 274]}
Length = 60
Score = 27.2 bits (61), Expect = 0.70
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 434 RALGLR---HVVVVNNNNHVVGMITR-KDL 459
+ALGLR V+ + + G + + L
Sbjct: 24 KALGLRRLQQERVLEDTPAIRGNVEKVAHL 53
>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30
{Deinococcus radiodurans [TaxId: 1299]}
Length = 55
Score = 26.0 bits (58), Expect = 1.6
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 434 RALGLR---HVVVVNNNNHVVGMITR 456
+ALGLR V++ V GM+
Sbjct: 21 QALGLRKIGDSREVSDTPAVRGMVKT 46
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 26.7 bits (59), Expect = 3.4
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 445 NNNNHVVGMITRKDLARYRVWRHGGRMG 472
N+ + + ++ RY ++R GR+G
Sbjct: 49 TNSYYKLQLLEDDKENRYWIFRSWGRVG 76
>d2pifa1 d.382.1.1 (A:7-262) Uncharacterized protein PSTPO5379
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 256
Score = 27.4 bits (61), Expect = 3.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 455 TRKDLARYRVWRHG 468
R D+ YR+WR G
Sbjct: 79 LRTDIPMYRIWRDG 92
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 144
Score = 26.1 bits (57), Expect = 6.1
Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 25/134 (18%)
Query: 134 KYALIGAAAQLGGVVRMTISL-----TIILIEATGNISFGLPLMLTLITAKWIGDFFTEG 188
K A++GA+ +G + + + + L + L A G E
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 189 LY------DIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKAT 242
L D+ + +G+P N A IV + +
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVAT--------------LTAACAQH 107
Query: 243 SHNGFPIVDVEPMT 256
+ + P+
Sbjct: 108 CPDAMICIISNPVN 121
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262
{Pseudomonas fluorescens [TaxId: 294]}
Length = 155
Score = 25.8 bits (57), Expect = 8.3
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 389 RYPSVNDLVVSENDRSFT 406
R+ +ND+ + +R F
Sbjct: 120 RFACINDMPIKAQERKFH 137
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha
subunit {Oxytricha nova [TaxId: 200597]}
Length = 169
Score = 25.7 bits (56), Expect = 9.9
Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 7/76 (9%)
Query: 402 DRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
D S L L+ + LP + + + + + N +
Sbjct: 58 DASDYATLVLYA-------KRFEDLPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSS 110
Query: 462 YRVWRHGGRMGLEELK 477
+ ++ R +E+
Sbjct: 111 WALFSTDKRSVTQEIN 126
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.419
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,811,447
Number of extensions: 83050
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 50
Length of query: 482
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 393
Effective length of database: 1,185,626
Effective search space: 465951018
Effective search space used: 465951018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)