BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15915
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29742|CLH_DROME Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=2 SV=1
Length = 1678
Score = 96.7 bits (239), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/61 (75%), Positives = 50/61 (81%)
Query: 34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTK 93
QIATKYHEQLT KALIDLFE FKSY+GLFYFL SIVN+SQD EVHFKYIQ K + +
Sbjct: 685 QIATKYHEQLTNKALIDLFEGFKSYDGLFYFLSSIVNFSQDPEVHFKYIQAACKTNQIKE 744
Query: 94 V 94
V
Sbjct: 745 V 745
>sp|Q68FD5|CLH1_MOUSE Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3
Length = 1675
Score = 92.4 bits (228), Expect = 6e-19, Method: Composition-based stats.
Identities = 41/54 (75%), Positives = 50/54 (92%)
Query: 34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ K
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737
>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5
Length = 1675
Score = 92.4 bits (228), Expect = 6e-19, Method: Composition-based stats.
Identities = 41/54 (75%), Positives = 50/54 (92%)
Query: 34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ K
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737
>sp|P49951|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1
Length = 1675
Score = 92.4 bits (228), Expect = 6e-19, Method: Composition-based stats.
Identities = 41/54 (75%), Positives = 50/54 (92%)
Query: 34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ K
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737
>sp|P11442|CLH1_RAT Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3
Length = 1675
Score = 92.4 bits (228), Expect = 7e-19, Method: Composition-based stats.
Identities = 41/54 (75%), Positives = 50/54 (92%)
Query: 34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ K
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737
>sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2
Length = 1640
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/71 (57%), Positives = 55/71 (77%)
Query: 17 MHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQE 76
+H + ++++ Q+A+KYHEQL T+AL++LFESFKSY+GLFYFLGSIVN+SQD +
Sbjct: 667 LHAMLSANIRQNLQLCVQVASKYHEQLGTQALVELFESFKSYKGLFYFLGSIVNFSQDPD 726
Query: 77 VHFKYIQVQGK 87
VH KYIQ K
Sbjct: 727 VHLKYIQAACK 737
>sp|P34574|CLH_CAEEL Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1
PE=3 SV=1
Length = 1681
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/67 (61%), Positives = 52/67 (77%)
Query: 17 MHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQE 76
+ + Q++++ V QIA+KYHEQL LI++FE+ KSYEGLFYFLGSIVN+SQD E
Sbjct: 669 LKAMLTQNIRQNLQVVVQIASKYHEQLGADKLIEMFENHKSYEGLFYFLGSIVNFSQDPE 728
Query: 77 VHFKYIQ 83
VHFKYIQ
Sbjct: 729 VHFKYIQ 735
>sp|Q10161|CLH_SCHPO Probable clathrin heavy chain OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=chc1 PE=1 SV=1
Length = 1666
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 54/79 (68%)
Query: 16 YMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQ 75
Y+ + +L++ V QIAT+Y + + + +I++FE FK++EGL+Y+LGSIVN ++D
Sbjct: 663 YLREMLRSNLRQNLQIVVQIATRYSDLVGAQRIIEMFEKFKTFEGLYYYLGSIVNITEDP 722
Query: 76 EVHFKYIQVQGKMHYTTKV 94
EV +KYIQ M+ T+V
Sbjct: 723 EVVYKYIQAACLMNQFTEV 741
>sp|Q0WNJ6|CLAH1_ARATH Clathrin heavy chain 1 OS=Arabidopsis thaliana GN=CHC1 PE=1 SV=1
Length = 1705
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 32 VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
+ Q +Y EQL A I LFE FKSYEGL++FLGS ++ S+D E+HFKYI+ K
Sbjct: 696 IVQACKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSMSEDPEIHFKYIEAAAK 751
>sp|Q0WLB5|CLAH2_ARATH Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1
Length = 1703
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 32 VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
+ Q +Y EQL A I LFE FKSYEGL++FLGS ++ S+D E+HFKYI+ K
Sbjct: 696 IVQACKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSMSEDPEIHFKYIEAAAK 751
>sp|Q2QYW2|CLH2_ORYSJ Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica
GN=Os12g0104800 PE=3 SV=1
Length = 1708
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 32 VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
V Q A +Y EQL A I LFE FKSYEGL++FLG+ ++ S+D ++HFKYI+ +
Sbjct: 696 VVQAAKEYSEQLGVDACIKLFEQFKSYEGLYFFLGAYLSSSEDPDIHFKYIEAAAR 751
>sp|Q2RBN7|CLH1_ORYSJ Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica
GN=Os11g0104900 PE=3 SV=1
Length = 1708
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 32 VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
V Q A +Y EQL A I LFE FKSYEGL++FLG+ ++ S+D ++HFKYI+ +
Sbjct: 696 VVQAAKEYSEQLGVDACIKLFEQFKSYEGLYFFLGAYLSSSEDPDIHFKYIEAAAR 751
>sp|P22137|CLH_YEAST Clathrin heavy chain OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CHC1 PE=1 SV=1
Length = 1653
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 40/57 (70%)
Query: 32 VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKM 88
V Q+ATK+ + + LI LFE + + EGL+Y+L S+VN ++D++V +KYI+ KM
Sbjct: 688 VVQVATKFSDLIGPSTLIKLFEDYNATEGLYYYLASLVNLTEDKDVVYKYIEAAAKM 744
>sp|P25870|CLH_DICDI Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1
Length = 1694
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 32 VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYT 91
V IA Y +Q+T +A+I +FESF+ YEGL+ +L +V S EVHFKYI+ K++
Sbjct: 683 VVAIAVSYSDQITPEAIIAMFESFRLYEGLYLYLTQVVVTSTSPEVHFKYIEAAAKINQF 742
Query: 92 TKV 94
+V
Sbjct: 743 KEV 745
>sp|Q6ZKV8|BIODA_ORYSJ Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid
aminotransferase, mitochondrial OS=Oryza sativa subsp.
japonica GN=BIO3-BIO1 PE=2 SV=1
Length = 821
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 7 RDRGRPKTRYMHTVFPQDLKEKKLEVSQI---------ATK--YHEQLTTKALIDLFESF 55
RD G RY H +FP+++ E L +++ A++ + + +T I L +F
Sbjct: 389 RDMGYAAARYGHVMFPENVHEPALRCAELLLGGVGKDWASRVYFSDNGSTAIEIALKMAF 448
Query: 56 KSYEGLFYFLGSIVNYSQD----QEVHFKYIQVQGKMHYTT 92
+ Y G IV+ +D VHFK + + G H T
Sbjct: 449 RKYACDH---GIIVDSEKDIRSEGSVHFKVLALNGSYHGDT 486
>sp|B9MR54|PNP_CALBD Polyribonucleotide nucleotidyltransferase OS=Caldicellulosiruptor
bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=pnp
PE=3 SV=1
Length = 701
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 7 RDRGRPKTRYMHTVFPQDLKEKKLEVS--------QIATKYHEQLTTKALIDLFES-FKS 57
R+ G+PK Y + P+D+K+K E++ QI K K L +L E FK+
Sbjct: 223 REVGKPKMEYQKRIVPEDIKQKVREIAYDKVYQYVQIPDKIERD---KKLDELKEEVFKA 279
Query: 58 YEG---LFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTKVGDLR 98
+EG L YS ++E+ K I +GK K ++R
Sbjct: 280 FEGETEETLLLVDDALYSLEKEIVRKMIAEEGKRPDGRKFDEIR 323
>sp|Q8NKC0|ASPG3_SCHPO Probable L-asparaginase 3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPBPB21E7.09 PE=3 SV=1
Length = 360
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 44 TTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQV--QGKMHY 90
TTK ++ ++FKSYE FLG I+ DQ HF Y GK+H+
Sbjct: 200 TTKTNGNMLDTFKSYEA--GFLGMIL----DQRPHFFYSPATPTGKVHF 242
>sp|P87015|ASPG1_SCHPO Probable L-asparaginase 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPAC186.03 PE=3 SV=1
Length = 360
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 44 TTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQV--QGKMHY 90
TTK ++ ++FKSYE FLG I+ DQ HF Y GK+H+
Sbjct: 200 TTKTNGNMLDTFKSYEA--GFLGMIL----DQRPHFFYSPATPTGKVHF 242
>sp|P47164|MET7_YEAST Cystathionine gamma-synthase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=STR2 PE=1 SV=1
Length = 639
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 8 DRGRPKTRYMHTVFPQDL------KEKKLEVSQIATKYHEQLTTKALIDLFESFKSY 58
D R Y+ T F ++L K K L +IATK E++ ++ L DLF SF+ Y
Sbjct: 181 DENRVNEEYIETRFGRNLNFLAADKAKYLIRKRIATKVVEKIDSEGLSDLF-SFEHY 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,826,705
Number of Sequences: 539616
Number of extensions: 1220705
Number of successful extensions: 2970
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2955
Number of HSP's gapped (non-prelim): 22
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)