Query psy15915
Match_columns 99
No_of_seqs 94 out of 120
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 16:27:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_A Clathrin heavy chain; a 100.0 1.5E-40 5.3E-45 304.9 4.8 84 14-97 664-747 (1630)
2 1xi4_A Clathrin heavy chain; a 88.3 0.14 4.9E-06 48.6 1.4 68 15-95 434-502 (1630)
3 2ezd_A High mobility group pro 82.1 0.44 1.5E-05 26.2 0.9 10 5-14 4-13 (26)
4 3vdp_A Recombination protein R 73.5 2.5 8.4E-05 32.3 3.1 47 48-94 104-153 (212)
5 2fo7_A Synthetic consensus TPR 49.0 32 0.0011 18.9 4.3 38 16-54 23-60 (136)
6 3v1a_A Computational design, M 48.5 6.3 0.00021 24.0 1.0 21 76-96 11-31 (48)
7 1z0k_B FYVE-finger-containing 47.1 8 0.00027 25.0 1.4 27 70-96 19-50 (69)
8 1z7l_A Ubiquitin-activating en 46.0 49 0.0017 25.3 6.0 65 24-88 83-156 (276)
9 1z0j_B FYVE-finger-containing 45.2 5.4 0.00018 25.3 0.4 21 76-96 19-39 (59)
10 3k9i_A BH0479 protein; putativ 43.6 48 0.0016 19.4 5.8 69 14-94 10-80 (117)
11 2ooe_A Cleavage stimulation fa 42.4 34 0.0012 25.7 4.5 64 19-96 4-67 (530)
12 1yzm_A FYVE-finger-containing 41.7 6.6 0.00022 24.1 0.4 21 76-96 12-32 (51)
13 2kw3_A DNA-binding protein RFX 40.7 21 0.00071 23.2 2.7 38 17-66 8-45 (68)
14 2wpv_A GET4, UPF0363 protein Y 38.4 15 0.00051 28.6 2.0 66 31-96 78-155 (312)
15 3mkr_A Coatomer subunit epsilo 36.5 66 0.0022 22.6 5.0 69 26-94 62-149 (291)
16 3cmm_A Ubiquitin-activating en 34.6 67 0.0023 28.9 5.8 63 26-88 657-728 (1015)
17 3mkb_A Hemoglobin subunit alph 33.0 27 0.00093 23.5 2.4 43 21-63 2-44 (140)
18 3m1i_C Exportin-1; heat repeat 32.9 37 0.0013 28.8 3.6 63 17-79 3-67 (1049)
19 3as5_A MAMA; tetratricopeptide 32.1 79 0.0027 18.5 4.9 21 73-93 142-162 (186)
20 2vgx_A Chaperone SYCD; alterna 31.9 95 0.0032 19.4 5.6 81 13-94 6-108 (148)
21 2y4t_A DNAJ homolog subfamily 30.2 69 0.0024 22.5 4.2 42 13-55 11-52 (450)
22 1q1f_A Neuroglobin; globin fol 29.4 70 0.0024 20.5 3.9 39 26-64 6-44 (151)
23 1cg5_A Protein (hemoglobin); o 29.1 42 0.0014 22.1 2.8 41 26-66 7-47 (141)
24 4fhn_B Nucleoporin NUP120; pro 28.9 33 0.0011 30.0 2.8 48 47-94 904-957 (1139)
25 1bby_A RAP30; average structur 28.7 26 0.0009 22.3 1.6 32 46-82 11-42 (69)
26 3hym_B Cell division cycle pro 26.6 58 0.002 21.4 3.1 43 12-55 6-48 (330)
27 2ho1_A Type 4 fimbrial biogene 26.1 1.1E+02 0.0037 19.5 4.3 37 16-53 59-95 (252)
28 3d1k_A Hemoglobin subunit alph 25.8 38 0.0013 22.2 2.1 40 27-66 8-47 (142)
29 2q7f_A YRRB protein; TPR, prot 24.5 1.3E+02 0.0046 18.7 4.7 39 15-54 44-82 (243)
30 2yu3_A DNA-directed RNA polyme 24.4 25 0.00084 23.3 0.9 35 55-89 13-53 (95)
31 1vdd_A Recombination protein R 24.2 19 0.00064 27.8 0.4 23 49-71 91-113 (228)
32 4hrt_A Globin-2 A chain; oxyge 22.7 59 0.002 21.6 2.6 47 21-67 11-57 (150)
33 2xk0_A Polycomb protein PCL; t 22.3 19 0.00066 23.4 0.1 19 56-75 25-43 (69)
34 3g46_A Globin-1; oxygen transp 22.3 56 0.0019 21.5 2.4 47 20-66 9-55 (146)
35 2d89_A EHBP1 protein; all alph 22.1 13 0.00043 24.9 -0.9 29 17-49 57-85 (119)
36 4g26_A Pentatricopeptide repea 22.0 1.4E+02 0.0046 23.6 4.9 22 75-96 175-196 (501)
37 3ffm_A Growth arrest and DNA-d 21.8 1.5E+02 0.0053 21.8 4.9 64 28-94 33-101 (167)
38 1na0_A Designed protein CTPR3; 21.3 1.1E+02 0.0038 16.6 5.3 66 15-93 30-95 (125)
39 4ga2_A E3 SUMO-protein ligase 21.3 1.5E+02 0.0053 18.2 5.9 65 16-93 53-117 (150)
40 1out_A Hemoglobin I; heme, oxy 21.2 53 0.0018 21.7 2.1 41 26-66 8-48 (143)
41 3u1d_A Uncharacterized protein 20.5 28 0.00096 24.8 0.6 46 4-59 83-128 (151)
42 2xcb_A PCRH, regulatory protei 20.3 1.5E+02 0.0052 17.8 5.5 78 16-94 6-105 (142)
43 1wmu_A Hemoglobin D alpha chai 20.2 52 0.0018 21.4 1.9 37 28-64 9-45 (141)
No 1
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=100.00 E-value=1.5e-40 Score=304.87 Aligned_cols=84 Identities=50% Similarity=0.842 Sum_probs=82.8
Q ss_pred chhHHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheehhhccccCCchhHHHHHHHhhhcCCcee
Q psy15915 14 TRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTK 93 (99)
Q Consensus 14 ~~~l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFKYIeAAak~gQ~kE 93 (99)
-+||++||+.|+|||||+||||||||||+||+++||+|||+|||+||||||||||||+|+||||||||||||||+||++|
T Consensus 664 ~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~e 743 (1630)
T 1xi4_A 664 LECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKE 743 (1630)
T ss_pred HHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q psy15915 94 VGDL 97 (99)
Q Consensus 94 VERv 97 (99)
||||
T Consensus 744 veri 747 (1630)
T 1xi4_A 744 VERI 747 (1630)
T ss_pred hhHH
Confidence 9998
No 2
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=88.34 E-value=0.14 Score=48.56 Aligned_cols=68 Identities=22% Similarity=0.155 Sum_probs=52.9
Q ss_pred hhHHHhcccCcchhHHHHHHHH-HHHhhhhChHHHHHHHHhccccchhhheehhhccccCCchhHHHHHHHhhhcCCcee
Q psy15915 15 RYMHTVFPQDLKEKKLEVSQIA-TKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTK 93 (99)
Q Consensus 15 ~~l~~lL~~N~rqNlQiVVqvA-~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFKYIeAAak~gQ~kE 93 (99)
+..+-+|..|-.|.++--+.-. ..+||.|| +++.++...-.+-.|+ .+.+|.|.|.+.|++|||+.
T Consensus 434 El~r~vl~q~r~~lle~Wl~e~KL~~SEeLG-----Dlv~~~d~~lAl~iY~--------~a~~~~Kvi~~l~~~gq~~k 500 (1630)
T 1xi4_A 434 ELCRPVLQQGRKQLLEKWLKEDKLECSEELG-----DLVKSVDPTLALSVYL--------RANVPNKVIQCFAETGQVQK 500 (1630)
T ss_pred HHHHHHHHhchHHHHHHHHHhCCccccHHHH-----HHHHhcChHHHHHHHH--------hcCCcHHHHHHHHHhCCHHH
Confidence 4455667777666666555555 56888888 7888888888988888 56799999999999999987
Q ss_pred ec
Q psy15915 94 VG 95 (99)
Q Consensus 94 VE 95 (99)
+-
T Consensus 501 i~ 502 (1630)
T 1xi4_A 501 IV 502 (1630)
T ss_pred HH
Confidence 63
No 3
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=82.14 E-value=0.44 Score=26.24 Aligned_cols=10 Identities=70% Similarity=1.042 Sum_probs=8.6
Q ss_pred CccCCCCccc
Q psy15915 5 GKRDRGRPKT 14 (99)
Q Consensus 5 ~~~~~~~~~~ 14 (99)
.||.|||||-
T Consensus 4 pKrpRgRpkG 13 (26)
T 2ezd_A 4 PKRPRGRPKG 13 (26)
T ss_dssp CCCCSSCCTT
T ss_pred CcCCCCCcCc
Confidence 5899999984
No 4
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=73.48 E-value=2.5 Score=32.33 Aligned_cols=47 Identities=15% Similarity=0.281 Sum_probs=35.9
Q ss_pred HHHHHHhccccchhhheehhhccccCC---chhHHHHHHHhhhcCCceee
Q psy15915 48 LIDLFESFKSYEGLFYFLGSIVNYSQD---QEVHFKYIQVQGKMHYTTKV 94 (99)
Q Consensus 48 lI~lFE~~ks~EGLyyyLgsiVn~seD---pdVhFKYIeAAak~gQ~kEV 94 (99)
=+..+|+-+.|.|+|+.||..++--+. .|+.++=+..=.+.|+++||
T Consensus 104 Dv~aiE~t~~y~G~YhVLgG~iSPldGigP~~L~i~~L~~Ri~~~~v~EV 153 (212)
T 3vdp_A 104 DVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEV 153 (212)
T ss_dssp HHHHHHTTSCCCEEEEECSSCCBTTTTBCGGGTTHHHHHHHHHHSCCSEE
T ss_pred HHHHHHhhCccceEEEecCCccCccCCCCccccCHHHHHHHHhcCCCcEE
Confidence 355689999999999999987654443 36777777776777888887
No 5
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=49.04 E-value=32 Score=18.95 Aligned_cols=38 Identities=13% Similarity=0.230 Sum_probs=17.9
Q ss_pred hHHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHh
Q psy15915 16 YMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFES 54 (99)
Q Consensus 16 ~l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~ 54 (99)
+++.++..+ ..+......+|.-|...=-.+.-++.|++
T Consensus 23 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 60 (136)
T 2fo7_A 23 YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60 (136)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444444433 23455555555555544444445555543
No 6
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=48.45 E-value=6.3 Score=23.97 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=17.5
Q ss_pred hhHHHHHHHhhhcCCceeecc
Q psy15915 76 EVHFKYIQVQGKMHYTTKVGD 96 (99)
Q Consensus 76 dVhFKYIeAAak~gQ~kEVER 96 (99)
.+.=.||+.|.+.+.|.||+-
T Consensus 11 ~~I~~~I~qAk~~rRfdEV~~ 31 (48)
T 3v1a_A 11 KNIHSFIHQAKAAGRMDEVRT 31 (48)
T ss_dssp HHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHH
Confidence 455689999999999999863
No 7
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=47.05 E-value=8 Score=25.03 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=21.9
Q ss_pred cccCCc-----hhHHHHHHHhhhcCCceeecc
Q psy15915 70 NYSQDQ-----EVHFKYIQVQGKMHYTTKVGD 96 (99)
Q Consensus 70 n~seDp-----dVhFKYIeAAak~gQ~kEVER 96 (99)
..+.|| .+.=+||+-|.+.+.|.||+-
T Consensus 19 ~~~~dPL~EQ~~~I~~yI~qAk~~~r~DEV~t 50 (69)
T 1z0k_B 19 SEDSDPLLQQIHNITSFIRQAKAAGRMDEVRT 50 (69)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 344577 667799999999999999973
No 8
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=46.03 E-value=49 Score=25.32 Aligned_cols=65 Identities=14% Similarity=0.310 Sum_probs=40.9
Q ss_pred CcchhHHHHHHHHHH-HhhhhC--hHHHHHHHH-hccccchhhheeh-----hhccccCCchhHHHHHHHhhhc
Q psy15915 24 DLKEKKLEVSQIATK-YHEQLT--TKALIDLFE-SFKSYEGLFYFLG-----SIVNYSQDQEVHFKYIQVQGKM 88 (99)
Q Consensus 24 N~rqNlQiVVqvA~k-Ysd~lg--~~~lI~lFE-~~ks~EGLyyyLg-----siVn~seDpdVhFKYIeAAak~ 88 (99)
+-..+.+-+|+.|.. |..... +..|+.+|- +....+|--|.-| .-+.+..+.+.|+.||.|||.+
T Consensus 83 ~~p~~~~~c~~~Ar~~F~k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~Kr~P~PL~fd~~~~~h~~fI~aaa~L 156 (276)
T 1z7l_A 83 QRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANL 156 (276)
T ss_dssp TCCSSHHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCTTSCBSSCSSCCCCCCCCCCTTSHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCcccCCCCCCCCCcccCCCchHHHHHHHHHHHH
Confidence 334466667787764 444443 334444443 4566678777755 1345656668999999999976
No 9
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=45.24 E-value=5.4 Score=25.27 Aligned_cols=21 Identities=14% Similarity=-0.051 Sum_probs=18.3
Q ss_pred hhHHHHHHHhhhcCCceeecc
Q psy15915 76 EVHFKYIQVQGKMHYTTKVGD 96 (99)
Q Consensus 76 dVhFKYIeAAak~gQ~kEVER 96 (99)
+..=+||+-|.+.|.|.||+-
T Consensus 19 ~~I~~yI~qAk~~~R~DEV~~ 39 (59)
T 1z0j_B 19 DNIKAYIFDAKQCGRLDEVEV 39 (59)
T ss_dssp HHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHH
Confidence 566799999999999999973
No 10
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=43.61 E-value=48 Score=19.39 Aligned_cols=69 Identities=7% Similarity=0.046 Sum_probs=46.2
Q ss_pred chhHHHhcccC--cchhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheehhhccccCCchhHHHHHHHhhhcCCc
Q psy15915 14 TRYMHTVFPQD--LKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYT 91 (99)
Q Consensus 14 ~~~l~~lL~~N--~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFKYIeAAak~gQ~ 91 (99)
.++++..|..| -..+..+....|.-|..+=-.+.-++.|++- +--..+++++++.+-.+-.++|++
T Consensus 10 ~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------l~~~p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 10 VPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG------------VKQFPNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHhCCCchHHHHHHHHHHHHcCCH
Confidence 36777777764 3667888888888888777777777777752 222345566777777777777766
Q ss_pred eee
Q psy15915 92 TKV 94 (99)
Q Consensus 92 kEV 94 (99)
+|.
T Consensus 78 ~~A 80 (117)
T 3k9i_A 78 EQG 80 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 11
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=42.38 E-value=34 Score=25.66 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=39.1
Q ss_pred HhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheehhhccccCCchhHHHHHHHhhhcCCceeecc
Q psy15915 19 TVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTKVGD 96 (99)
Q Consensus 19 ~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFKYIeAAak~gQ~kEVER 96 (99)
..|..| +.|...-...+. +.+.=..+...++||+.-. .+..++++..+|++...+.|++.+++.
T Consensus 4 ~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~------------~~P~~~~~w~~~~~~~~~~~~~~~a~~ 67 (530)
T 2ooe_A 4 KKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVA------------QFPSSGRFWKLYIEAEIKAKNYDKVEK 67 (530)
T ss_dssp HHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHT------------TCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHH------------HCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 334445 456666666665 4433346667777775422 234567777888888777777766553
No 12
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=41.69 E-value=6.6 Score=24.12 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=18.2
Q ss_pred hhHHHHHHHhhhcCCceeecc
Q psy15915 76 EVHFKYIQVQGKMHYTTKVGD 96 (99)
Q Consensus 76 dVhFKYIeAAak~gQ~kEVER 96 (99)
.+.=+||+-|.+.|.|.||+-
T Consensus 12 ~~I~~~I~qAk~~~r~DEV~~ 32 (51)
T 1yzm_A 12 HNITSFIRQAKAAGRMDEVRT 32 (51)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHH
Confidence 566789999999999999873
No 13
>2kw3_A DNA-binding protein RFX5; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=40.65 E-value=21 Score=23.23 Aligned_cols=38 Identities=8% Similarity=0.258 Sum_probs=30.8
Q ss_pred HHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheeh
Q psy15915 17 MHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLG 66 (99)
Q Consensus 17 l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLg 66 (99)
|..=|+++|..+.|-.|+ .|+.=-++|...|-||.||-
T Consensus 8 l~qklk~~I~K~vQskVd------------~ilqdV~kfsD~eKLyLYLk 45 (68)
T 2kw3_A 8 LLQRLRGTISKAVQNKVE------------GILQDVQKFSDNDKLYLYLQ 45 (68)
T ss_dssp HHHHHHHSCCHHHHHHHH------------HHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHH------------HHHHHHHHhcchhhhhheee
Confidence 334478889999998875 67777899999999999983
No 14
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=38.36 E-value=15 Score=28.60 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhhCh---HHHHHHHHhccccc-hhhheehhhcccc--------CCchhHHHHHHHhhhcCCceeecc
Q psy15915 31 EVSQIATKYHEQLTT---KALIDLFESFKSYE-GLFYFLGSIVNYS--------QDQEVHFKYIQVQGKMHYTTKVGD 96 (99)
Q Consensus 31 iVVqvA~kYsd~lg~---~~lI~lFE~~ks~E-GLyyyLgsiVn~s--------eDpdVhFKYIeAAak~gQ~kEVER 96 (99)
.+|+|-+|.....+. ++|++||..|...+ ...=|+...+.-| -||++|.--=+.-.+-|++.|.|+
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 456777777766665 57888888887555 3555555555433 388899877777777777766554
No 15
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=36.46 E-value=66 Score=22.65 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHhhhhChHHHHHHHHhc------cccchhhheehhhc-------------cccCCchhHHHHHHHhh
Q psy15915 26 KEKKLEVSQIATKYHEQLTTKALIDLFESF------KSYEGLFYFLGSIV-------------NYSQDQEVHFKYIQVQG 86 (99)
Q Consensus 26 rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~------ks~EGLyyyLgsiV-------------n~seDpdVhFKYIeAAa 86 (99)
..+++.+..+|.-|...=-.+..++.|++- ....-.++.||.+. .-..+++.++.-.+...
T Consensus 62 ~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~ 141 (291)
T 3mkr_A 62 APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILL 141 (291)
T ss_dssp CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345666666665555443355555555541 12233344444431 11345666666666666
Q ss_pred hcCCceee
Q psy15915 87 KMHYTTKV 94 (99)
Q Consensus 87 k~gQ~kEV 94 (99)
++|++.+.
T Consensus 142 ~~g~~~~A 149 (291)
T 3mkr_A 142 KLDRLDLA 149 (291)
T ss_dssp HTTCHHHH
T ss_pred HCCCHHHH
Confidence 66666554
No 16
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=34.60 E-value=67 Score=28.86 Aligned_cols=63 Identities=14% Similarity=0.292 Sum_probs=40.9
Q ss_pred chhHHHHHHHHHH-HhhhhC--hHHHHHHH-Hhccccchhhheeh-----hhccccCCchhHHHHHHHhhhc
Q psy15915 26 KEKKLEVSQIATK-YHEQLT--TKALIDLF-ESFKSYEGLFYFLG-----SIVNYSQDQEVHFKYIQVQGKM 88 (99)
Q Consensus 26 rqNlQiVVqvA~k-Ysd~lg--~~~lI~lF-E~~ks~EGLyyyLg-----siVn~seDpdVhFKYIeAAak~ 88 (99)
..+.+-+++.|.+ |..... +..|+..| .+.+..+|.-|+-| .-+.+..+.+.|+.||.||+.+
T Consensus 657 ~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~a~l 728 (1015)
T 3cmm_A 657 PHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASL 728 (1015)
T ss_dssp CSSHHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCSTTCBSSCTTCCCCCCCCCCTTSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCcccccCCCCCCCCcccCCCCHHHHHHHHHHHHh
Confidence 4456666777764 333332 23444443 34567788888877 5567777778899999999884
No 17
>3mkb_A Hemoglobin subunit alpha; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2 PDB: 1gcv_A* 1gcw_A*
Probab=32.97 E-value=27 Score=23.45 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=32.6
Q ss_pred cccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhh
Q psy15915 21 FPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFY 63 (99)
Q Consensus 21 L~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyy 63 (99)
|+..-++.++-.........+.+|.+.+..||+.|-.+.-+|=
T Consensus 2 Ls~~~~~~V~~~w~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~ 44 (140)
T 3mkb_A 2 FTGVERSTIGAIAKILASTPEAYGAEALARLFATHPGAKSYFD 44 (140)
T ss_dssp CCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHCGGGGGGCC
T ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHChHHHhhCc
Confidence 3333355566666667778889999999999999999887554
No 18
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=32.89 E-value=37 Score=28.82 Aligned_cols=63 Identities=11% Similarity=0.216 Sum_probs=44.3
Q ss_pred HHHhcccCcchhHHHHHHHHHHHhhhhCh--HHHHHHHHhccccchhhheehhhccccCCchhHH
Q psy15915 17 MHTVFPQDLKEKKLEVSQIATKYHEQLTT--KALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHF 79 (99)
Q Consensus 17 l~~lL~~N~rqNlQiVVqvA~kYsd~lg~--~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhF 79 (99)
|+.||..+...+++-+.|+.....+-=.. ..--+.+++++...+-+-++..|+..+.|++|.|
T Consensus 3 ~~~~~~~~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~ 67 (1049)
T 3m1i_C 3 MEGILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKF 67 (1049)
T ss_dssp GGGGGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHH
T ss_pred hhHhcCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHH
Confidence 67889888888998888887665432111 1234456777777787778888887788877754
No 19
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=32.06 E-value=79 Score=18.52 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=11.5
Q ss_pred CCchhHHHHHHHhhhcCCcee
Q psy15915 73 QDQEVHFKYIQVQGKMHYTTK 93 (99)
Q Consensus 73 eDpdVhFKYIeAAak~gQ~kE 93 (99)
.++++.+....+..+.|++.+
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHcCCHHH
Confidence 345555555555555555544
No 20
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=31.87 E-value=95 Score=19.37 Aligned_cols=81 Identities=7% Similarity=-0.019 Sum_probs=50.0
Q ss_pred cchhHHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhc----cccchhhheehhhc------------------c
Q psy15915 13 KTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESF----KSYEGLFYFLGSIV------------------N 70 (99)
Q Consensus 13 ~~~~l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~----ks~EGLyyyLgsiV------------------n 70 (99)
.-.+++..+..+ ..+.......|..|..+=-.+.-++.|++- ......++.||.+. -
T Consensus 6 ~~~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 6 GGGTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCCSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345777778776 668888888888887776666667776642 22233344444331 1
Q ss_pred ccCCchhHHHHHHHhhhcCCceee
Q psy15915 71 YSQDQEVHFKYIQVQGKMHYTTKV 94 (99)
Q Consensus 71 ~seDpdVhFKYIeAAak~gQ~kEV 94 (99)
...||+.+|..-.+-..+|++.|.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A 108 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEA 108 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHH
Confidence 235666676666666667766553
No 21
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=30.17 E-value=69 Score=22.45 Aligned_cols=42 Identities=7% Similarity=-0.022 Sum_probs=24.3
Q ss_pred cchhHHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhc
Q psy15915 13 KTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESF 55 (99)
Q Consensus 13 ~~~~l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ 55 (99)
-+..+.+++..+ ..|.......|..|...=-.+.-+++|++-
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 52 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAA 52 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345566666666 678888888998888887777888888753
No 22
>1q1f_A Neuroglobin; globin fold, heme protein, oxygen storage/transport complex; HET: HEM; 1.50A {Mus musculus} SCOP: a.1.1.2 PDB: 1w92_A* 3gk9_A* 2vry_A* 3gkt_A* 3gln_A* 1oj6_A*
Probab=29.38 E-value=70 Score=20.51 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=30.5
Q ss_pred chhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhhe
Q psy15915 26 KEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYF 64 (99)
Q Consensus 26 rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyy 64 (99)
++.++-.........+.+|..-+..||+.+-....+|=+
T Consensus 6 ~~~v~~sw~~v~~~~~~~g~~~y~~lf~~~P~~~~~F~~ 44 (151)
T 1q1f_A 6 SELIRQSWRVVSRSPLEHGTVLFARLFALEPSLLPLFQY 44 (151)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHHHHHCGGGGGGCCB
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHChHHHHhCCc
Confidence 344555555566677889999999999999999888875
No 23
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=29.15 E-value=42 Score=22.06 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=30.8
Q ss_pred chhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheeh
Q psy15915 26 KEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLG 66 (99)
Q Consensus 26 rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLg 66 (99)
++.++-.........+.+|+.-+..||+.+-.+.-+|=-++
T Consensus 7 ~~~V~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~f~ 47 (141)
T 1cg5_A 7 KKAIEELGNLIKANAEAWGADALARLFELHPQTKTYFSKFS 47 (141)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGGGGGGTTCS
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHCchHHHHhHHhC
Confidence 33444455555566788999999999999999988776554
No 24
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=28.95 E-value=33 Score=29.99 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=35.2
Q ss_pred HHHHHHHhccccchhhheeh-hhcccc-CCch----hHHHHHHHhhhcCCceee
Q psy15915 47 ALIDLFESFKSYEGLFYFLG-SIVNYS-QDQE----VHFKYIQVQGKMHYTTKV 94 (99)
Q Consensus 47 ~lI~lFE~~ks~EGLyyyLg-siVn~s-eDpd----VhFKYIeAAak~gQ~kEV 94 (99)
.++.|||+++++|..--|-- +|=... +|++ ++.+...++..+|+|.|+
T Consensus 904 hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 904 HLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 68999999999998765543 332222 3432 788889999999999875
No 25
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=28.67 E-value=26 Score=22.26 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=26.2
Q ss_pred HHHHHHHHhccccchhhheehhhccccCCchhHHHHH
Q psy15915 46 KALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYI 82 (99)
Q Consensus 46 ~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFKYI 82 (99)
+.|.++||++ -||=|..++..|+-|+.+.|=|
T Consensus 11 d~lF~~Fek~-----~yw~lK~L~~~t~QP~~yLKei 42 (69)
T 1bby_A 11 DMLFSAFEKH-----QYYNLKDLVDITKQPVVYLKEI 42 (69)
T ss_dssp HHHHHHHHHC-----SCBCHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHhhc-----CCCcHHHHHHHHcCcHHHHHHH
Confidence 4678889888 4778999999999999887744
No 26
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=26.58 E-value=58 Score=21.37 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=23.0
Q ss_pred ccchhHHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhc
Q psy15915 12 PKTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESF 55 (99)
Q Consensus 12 ~~~~~l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ 55 (99)
|....+.+.+. +...|..+....|..|...=-.+.-+++|++.
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 48 (330)
T 3hym_B 6 PSETVIPESVD-GLQENLDVVVSLAERHYYNCDFKMCYKLTSVV 48 (330)
T ss_dssp ---------------CCCTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhhhHHHHh-hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344555555 34677888888888888886677778877764
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=26.12 E-value=1.1e+02 Score=19.49 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=15.1
Q ss_pred hHHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHH
Q psy15915 16 YMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFE 53 (99)
Q Consensus 16 ~l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE 53 (99)
+++..+..+ ..+..+....|.-|...=-.+.-++.|+
T Consensus 59 ~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 95 (252)
T 2ho1_A 59 PLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYR 95 (252)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444433 2334444444444444333334444433
No 28
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=25.79 E-value=38 Score=22.15 Aligned_cols=40 Identities=10% Similarity=0.036 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheeh
Q psy15915 27 EKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLG 66 (99)
Q Consensus 27 qNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLg 66 (99)
+.++-.........+.+|+.-+..||+.+-.+..+|=..+
T Consensus 8 ~~v~~sw~~v~~~~~~~g~~~~~rlF~~~P~~~~~F~~~~ 47 (142)
T 3d1k_A 8 AAVRALWSKIGKSSDAIGNDALSRMIVVYPQTKIYFSHWP 47 (142)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHSGGGGGGGTTSS
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHCccHHHHHHHhC
Confidence 3444444455556789999999999999988888775543
No 29
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=24.50 E-value=1.3e+02 Score=18.70 Aligned_cols=39 Identities=8% Similarity=0.163 Sum_probs=20.5
Q ss_pred hhHHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHh
Q psy15915 15 RYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFES 54 (99)
Q Consensus 15 ~~l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~ 54 (99)
.+++..+..+ ..+..+....|.-|...=-.+.-++.|++
T Consensus 44 ~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 82 (243)
T 2q7f_A 44 EAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDK 82 (243)
T ss_dssp TTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555544 44556666666655554444444444443
No 30
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.43 E-value=25 Score=23.30 Aligned_cols=35 Identities=17% Similarity=0.397 Sum_probs=25.9
Q ss_pred ccccchhhheeh------hhccccCCchhHHHHHHHhhhcC
Q psy15915 55 FKSYEGLFYFLG------SIVNYSQDQEVHFKYIQVQGKMH 89 (99)
Q Consensus 55 ~ks~EGLyyyLg------siVn~seDpdVhFKYIeAAak~g 89 (99)
++...+|+|=+- ..-.+|++.-+.|++|+.|...|
T Consensus 13 ~k~~~~l~~~~~~~~~a~k~~~Lt~~E~lVy~~I~~aGn~G 53 (95)
T 2yu3_A 13 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKG 53 (95)
T ss_dssp CCCCCCCEEEECCSSSCCCCCSCSHHHHHHHHHHHHHTTSC
T ss_pred EEcCCEEEEEEeCHHHHhhhcCCCHHHHHHHHHHHHhCCCC
Confidence 344567777665 24667888889999999988765
No 31
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=24.16 E-value=19 Score=27.78 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=19.3
Q ss_pred HHHHHhccccchhhheehhhccc
Q psy15915 49 IDLFESFKSYEGLFYFLGSIVNY 71 (99)
Q Consensus 49 I~lFE~~ks~EGLyyyLgsiVn~ 71 (99)
+-.+|+-+.|.|+|+.||..++-
T Consensus 91 v~aiE~t~~y~G~YhVLgG~lSP 113 (228)
T 1vdd_A 91 VIALERSGEYRGLYHVLHGVLSP 113 (228)
T ss_dssp HHHTTTTSSCCSEEEECSSCCBG
T ss_pred HHHHHHhcccceEEEecCCccCc
Confidence 56689999999999999986543
No 32
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=22.70 E-value=59 Score=21.56 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=34.1
Q ss_pred cccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheehh
Q psy15915 21 FPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGS 67 (99)
Q Consensus 21 L~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgs 67 (99)
|+..-++.++-.........+.+|..-+..||+.|-.+..+|=.++.
T Consensus 11 ls~~~~~~V~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~~ 57 (150)
T 4hrt_A 11 GSEAIKANLRRSWGVLSADIEATGLMLMSNLFTLRPDTKTYFTRLGD 57 (150)
T ss_dssp TCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCGGGGGGGGGGCC
T ss_pred CCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHCHHHHHHHHHcCC
Confidence 44443445555555555567889999999999999999888876543
No 33
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=22.26 E-value=19 Score=23.40 Aligned_cols=19 Identities=42% Similarity=0.875 Sum_probs=13.4
Q ss_pred cccchhhheehhhccccCCc
Q psy15915 56 KSYEGLFYFLGSIVNYSQDQ 75 (99)
Q Consensus 56 ks~EGLyyyLgsiVn~seDp 75 (99)
+..+|+| |||.||+.+++.
T Consensus 25 rw~DG~f-YLGtIVd~~~~~ 43 (69)
T 2xk0_A 25 KCNDGRF-YLGTIIDQTSDQ 43 (69)
T ss_dssp ECTTSCE-EEEEEEEECSSC
T ss_pred EecCCCE-EEEEEEecCCce
Confidence 4566775 689998877654
No 34
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=22.25 E-value=56 Score=21.48 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=35.3
Q ss_pred hcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheeh
Q psy15915 20 VFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLG 66 (99)
Q Consensus 20 lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLg 66 (99)
+|+..-++.++-.........+.+|..-+..||+.|-.+--+|=..+
T Consensus 9 ~Lt~~~~~~I~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~ 55 (146)
T 3g46_A 9 QLTADVKKDLRDSWKVIGSDKKGNGVALMTTLFADNQETIGYFKRLG 55 (146)
T ss_dssp TCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHCGGGGGGGGGGC
T ss_pred cCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHCHHHHHHHHHHc
Confidence 45555455666666666667889999999999999999888776443
No 35
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.07 E-value=13 Score=24.87 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=20.5
Q ss_pred HHHhcccCcchhHHHHHHHHHHHhhhhChHHHH
Q psy15915 17 MHTVFPQDLKEKKLEVSQIATKYHEQLTTKALI 49 (99)
Q Consensus 17 l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI 49 (99)
+..|-..|..+|++.+.++|. .||+.+++
T Consensus 57 ~~~l~~~~~~~n~~~af~~a~----~LGi~~ll 85 (119)
T 2d89_A 57 YKSLNPQDIKENNKKAYDGFA----SIGISRLL 85 (119)
T ss_dssp GGGCCTTCSHHHHHHHHHHHH----HHTCCCCS
T ss_pred hhhhcccCHHHHHHHHHHHHH----HhCCCccc
Confidence 344555788999999999984 46665444
No 36
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=21.97 E-value=1.4e+02 Score=23.60 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=12.4
Q ss_pred chhHHHHHHHhhhcCCceeecc
Q psy15915 75 QEVHFKYIQVQGKMHYTTKVGD 96 (99)
Q Consensus 75 pdVhFKYIeAAak~gQ~kEVER 96 (99)
....--.|.|.++.|++.++++
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKVYK 196 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhCCCHHHHHH
Confidence 3334445666666666666544
No 37
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=21.75 E-value=1.5e+02 Score=21.80 Aligned_cols=64 Identities=14% Similarity=0.015 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHhhh-hChHHHHHHHHhccccchhhheehhhccccCCch----hHHHHHHHhhhcCCceee
Q psy15915 28 KKLEVSQIATKYHEQ-LTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQE----VHFKYIQVQGKMHYTTKV 94 (99)
Q Consensus 28 NlQiVVqvA~kYsd~-lg~~~lI~lFE~~ks~EGLyyyLgsiVn~seDpd----VhFKYIeAAak~gQ~kEV 94 (99)
-||.|..-|..-.-+ .|.....+..++- .-.-.+-+|++- -++++| +|||-|||=|.-+|+.=|
T Consensus 33 ALqeVLk~Al~~dgL~~Gl~EaaKaLd~~-p~~a~LCvLA~d--c~~e~D~alqmy~kLVeAlC~E~~I~LI 101 (167)
T 3ffm_A 33 ALHELLLSAQRQGCLTAGVYESAKVLNVD-PDNVTFCVLAAG--EEDEGDIALQIHFTLIQAFCCENDIDIV 101 (167)
T ss_dssp HHHHHHHHHHHTTCEEESHHHHHHHHHHC-GGGEEEEEEECC--GGGTTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhCCccccHHHHHHHhccC-CCeEEEEEEeCC--CCcccchhHHHHHHHHHHHHhhcCCCeE
Confidence 477777777766665 7888888888762 134456666542 222355 699999999998887643
No 38
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=21.33 E-value=1.1e+02 Score=16.57 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=32.8
Q ss_pred hhHHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheehhhccccCCchhHHHHHHHhhhcCCcee
Q psy15915 15 RYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTK 93 (99)
Q Consensus 15 ~~l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFKYIeAAak~gQ~kE 93 (99)
++++..+..+ ..+..+....|.-|...=-.+.-++.|++-- -....++++++....+..+.|++.+
T Consensus 30 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~~~~la~~~~~~~~~~~ 95 (125)
T 1na0_A 30 EYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL------------ELDPNNAEAWYNLGNAYYKQGDYDE 95 (125)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------HhCCccHHHHHHHHHHHHHhcCHHH
Confidence 3455555443 3455555566665555544555555555421 1123345555555555555555544
No 39
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=21.28 E-value=1.5e+02 Score=18.25 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=32.3
Q ss_pred hHHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheehhhccccCCchhHHHHHHHhhhcCCcee
Q psy15915 16 YMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTK 93 (99)
Q Consensus 16 ~l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFKYIeAAak~gQ~kE 93 (99)
+++..|+.| ..|...-...|.-|..+=-.+.-++.|++ ++---..++++++..-.+-.+.|++.|
T Consensus 53 ~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~------------al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 53 YICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRR------------SVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHH------------HHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 344444444 33455555555444444333444443332 222234566777777777777777654
No 40
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=21.19 E-value=53 Score=21.67 Aligned_cols=41 Identities=10% Similarity=0.060 Sum_probs=30.6
Q ss_pred chhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheeh
Q psy15915 26 KEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLG 66 (99)
Q Consensus 26 rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLg 66 (99)
++.++-.........+.+|+.-+..||+.+-.+..+|=.++
T Consensus 8 ~~~V~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~f~ 48 (143)
T 1out_A 8 KSVVKAFWGKISGKADVVGAEALGRMLTAYPQTKTYFSHWA 48 (143)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHSGGGGGGGTTSS
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHCccHHHHHHHcC
Confidence 33444444555556789999999999999999988876554
No 41
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=20.50 E-value=28 Score=24.75 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=26.5
Q ss_pred CCccCCCCccchhHHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhccccc
Q psy15915 4 GGKRDRGRPKTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYE 59 (99)
Q Consensus 4 ~~~~~~~~~~~~~l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~E 59 (99)
+|.++||||.+.|- |. .+..... ..|+++-+...+=.|-+...-+|
T Consensus 83 ~~~~~rGrP~k~Y~---LT---~~Gr~~l----~~y~~la~~~alr~l~~~v~~t~ 128 (151)
T 3u1d_A 83 RAKSVDDPPTTFYA---VT---GEGIALL----RAVSMYEEAAVWRSVYEQMERTD 128 (151)
T ss_dssp CCTTSSSCCCEEEE---EC---HHHHHHH----HHTTCSTHHHHTHHHHHHSCCCH
T ss_pred cCcccCCCCceEEE---EC---HHHHHHH----HHhHHHhHHHHHHHHHHHhhccH
Confidence 57789999999885 22 1222222 23555555566666666554444
No 42
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=20.33 E-value=1.5e+02 Score=17.76 Aligned_cols=78 Identities=6% Similarity=0.026 Sum_probs=40.9
Q ss_pred hHHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhc----cccchhhheehhh------------------ccccC
Q psy15915 16 YMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESF----KSYEGLFYFLGSI------------------VNYSQ 73 (99)
Q Consensus 16 ~l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~----ks~EGLyyyLgsi------------------Vn~se 73 (99)
+++..+..+ ..+.......|..|..+=-.+.-++.|++. ......++.||.+ ---..
T Consensus 6 ~l~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 6 TLAMLRGLS-EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ---CCTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHcCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 444555544 445666666666665554455555555532 1222333334333 22245
Q ss_pred CchhHHHHHHHhhhcCCceee
Q psy15915 74 DQEVHFKYIQVQGKMHYTTKV 94 (99)
Q Consensus 74 DpdVhFKYIeAAak~gQ~kEV 94 (99)
||++++..-.+...+|++.+.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A 105 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGA 105 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHH
Confidence 677777777777777777654
No 43
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=20.19 E-value=52 Score=21.40 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhhe
Q psy15915 28 KKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYF 64 (99)
Q Consensus 28 NlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyy 64 (99)
.++-.........+.+|..-+..||+.+-.+.-+|=.
T Consensus 9 ~v~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~ 45 (141)
T 1wmu_A 9 LIQHVWEKVLEHQEDFGAEALERMFIVYPSTKTYFPH 45 (141)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHSGGGGGGCTT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHCccHHHHHHh
Confidence 3444444444567899999999999999888877654
Done!