RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15915
         (99 letters)



>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
           endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
           i.23.1.1 PDB: 1xi5_A 3iyv_A
          Length = 1630

 Score = 82.4 bits (203), Expect = 4e-20
 Identities = 42/63 (66%), Positives = 52/63 (82%)

Query: 32  VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYT 91
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K    
Sbjct: 682 CVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQI 741

Query: 92  TKV 94
            +V
Sbjct: 742 KEV 744


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.5 bits (73), Expect = 0.016
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 21/77 (27%)

Query: 39  YHEQLTTKALIDLFESFKS-YEGL-FYFL--------------GSIVNYSQDQEVHFKYI 82
           +H  L      +    F+  +  L F FL              GSI+N  Q  + +  YI
Sbjct: 479 HH--LKNIEHPERMTLFRMVF--LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 83  QVQGKMHYTTKVGDLRH 99
                  Y   V  +  
Sbjct: 535 CDN-DPKYERLVNAILD 550



 Score = 28.3 bits (62), Expect = 0.44
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 3/47 (6%)

Query: 28 KKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIV--NYS 72
           K E+  I         T  L     S K  E +  F+  ++  NY 
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINYK 92


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           RED beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 28.3 bits (63), Expect = 0.41
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 24  DLKEKK-LEVSQIATKYHEQLTTKALIDLFES--FKSY 58
           D K K+ ++   +  KY   +   + I L E   F  Y
Sbjct: 878 DSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGY 915


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 0.50
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 30/98 (30%)

Query: 7    RDRGRPKTRYMHTVFPQDLKEKKLEVSQIA---TKYHEQLTTKALIDLFESFKSYEGLFY 63
              RG      M    P+D +  +     IA    +     + +AL  + E      G  +
Sbjct: 1787 FYRGM----TMQVAVPRD-ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG--W 1839

Query: 64   FLGSIVNY-SQDQEVHFKYIQVQGKMHYTTKV--GDLR 98
             +  IVNY  ++Q       Q          V  GDLR
Sbjct: 1840 LV-EIVNYNVENQ-------QY---------VAAGDLR 1860


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.6 bits (60), Expect = 0.56
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 10/33 (30%)

Query: 23 QDLKEKKLEVSQIATKYHE-----QLTTKALID 50
          Q LK  KL+ S    K +       L  KA ++
Sbjct: 20 QALK--KLQAS---LKLYADDSAPALAIKATME 47


>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum;
          ribonucleoprotein, nucleotide-binding, PR biosynthesis,
          translation, zinc-finger, 70S ribosome, ribos
          translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
          Length = 98

 Score = 24.4 bits (53), Expect = 4.7
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 60 GLFYFLGSIVNYSQD-QEVHFKYIQVQGKMHYTTKVGDLRH 99
           +      ++ + +D Q +    + + G+ HYT    D+R 
Sbjct: 16 TVLVSGWVVLGWMEDAQRLPLSKLVLTGERHYTRN-DDIRQ 55


>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical
           protein, regulatory protei apoptosis, cancer; NMR {Homo
           sapiens}
          Length = 171

 Score = 24.1 bits (52), Expect = 9.2
 Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 3   VGGKRDRGRPKTRYMHTVFPQDL---KEKKLEVSQIATKYHEQLTTKALIDL-FESFKSY 58
             G  +   PK   +    P+ +   + ++ E +Q      + +    ++ L +  F++ 
Sbjct: 68  FQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNV 127

Query: 59  EGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTKVGDLR 98
             +  F+ S  N  +++     Y    G     T + D +
Sbjct: 128 NSVTIFVQS--NQGEEETTRISYFTFIGTPVQATNMNDFK 165


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,413,349
Number of extensions: 66051
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 14
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)