BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15918
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The
Adipocyte- Transcription Factor Freac-11 (S12)
Length = 94
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 68/82 (82%)
Query: 120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVP 179
YSY ALI MAI+ +PEK++TLNGIY++IM FP+Y+ NKQGWQNSIRHNLSLN+CFVKVP
Sbjct: 7 YSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVP 66
Query: 180 RHYDDPGKGNYWMLDASSEDVF 201
R PGKG+YW LD S ++F
Sbjct: 67 RDDKKPGKGSYWTLDPDSYNMF 88
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20
Structures
Length = 109
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 63/82 (76%)
Query: 120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVP 179
YSY ALI MAI QSP+K+LTL+GI E+I FPYY+ WQNSIRHNLSLN CFVK+P
Sbjct: 6 YSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIP 65
Query: 180 RHYDDPGKGNYWMLDASSEDVF 201
R +PGKGNYW LD SED+F
Sbjct: 66 REPGNPGKGNYWTLDPQSEDMF 87
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
Length = 97
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 63/82 (76%)
Query: 120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVP 179
YSY ALI MAI QSP+K+LTL+GI E+I FPYY+ WQNSIRHNLSLN CFVK+P
Sbjct: 5 YSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIP 64
Query: 180 RHYDDPGKGNYWMLDASSEDVF 201
R +PGKGNYW LD SED+F
Sbjct: 65 REPGNPGKGNYWTLDPQSEDMF 86
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
Length = 111
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 65/83 (78%)
Query: 120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVP 179
YSY LI+ AI +P+K+LTLNGIY +I N+PYY+T +GWQNSIRHNLSLN+ F+KVP
Sbjct: 19 YSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVP 78
Query: 180 RHYDDPGKGNYWMLDASSEDVFI 202
R ++PGKG++W +D +SE I
Sbjct: 79 RSQEEPGKGSFWRIDPASESKLI 101
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Interleukin Enhancer Binding Factor
Length = 98
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 65/83 (78%)
Query: 120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVP 179
YSY LI+ AI +P+K+LTLNGIY +I N+PYY+T +GWQNSIRHNLSLN+ F+KVP
Sbjct: 6 YSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVP 65
Query: 180 RHYDDPGKGNYWMLDASSEDVFI 202
R ++PGKG++W +D +SE I
Sbjct: 66 RSQEEPGKGSFWRIDPASESKLI 88
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition
Motif Resembles Histone H5
Length = 102
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 63/82 (76%)
Query: 120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVP 179
YSY +LI MAI+Q+P K LTL+ IY++IM FPYY+ N+Q WQNSIRH+LS N CFVKV
Sbjct: 6 YSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVA 65
Query: 180 RHYDDPGKGNYWMLDASSEDVF 201
R D PGKG+YW L SS ++F
Sbjct: 66 RSPDKPGKGSYWALHPSSGNMF 87
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of
Myocyte Nuclear Factor
pdb|2D2W|A Chain A, Solution Structure And Dynamics Of The Dna-Binding Domain
Of Myocyte Nuclear Factor
Length = 101
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 64/83 (77%)
Query: 120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVP 179
YSY LI+ AI + +++LTL+GIY +I ++PYY+T +GWQNSIRHNLSLN+ F+KVP
Sbjct: 6 YSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLNRYFIKVP 65
Query: 180 RHYDDPGKGNYWMLDASSEDVFI 202
R ++PGKG++W +D +SE +
Sbjct: 66 RSQEEPGKGSFWRIDPASEAKLV 88
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1
Length = 100
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVP 179
YSY ALI MAIR S RLTL I EY+M FP+++ + GW+NS+RHNLSLN CFVKV
Sbjct: 5 YSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVL 64
Query: 180 RHYDDP-GKGNYWMLDASSEDVF 201
R P GK NYWML+ +SE F
Sbjct: 65 RDPSRPWGKDNYWMLNPNSEYTF 87
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
Query: 121 SYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYK-----TNKQGWQNSIRHNLSLNKCF 175
SY LI AI +PEKRLTL IYE+++ PY+K + GW+NSIRHNLSL+ F
Sbjct: 44 SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 103
Query: 176 VKVPRHYDDPGKGNYWMLD 194
+KV H + GK ++WML+
Sbjct: 104 IKV--HNEATGKSSWWMLN 120
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound
To Dna
Length = 110
Score = 75.5 bits (184), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
Query: 121 SYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYK-----TNKQGWQNSIRHNLSLNKCF 175
SY LI AI +PEKRLTL IYE+++ PY+K + GW+NSIRHNLSL+ F
Sbjct: 28 SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 87
Query: 176 VKVPRHYDDPGKGNYWMLD 194
+KV H + GK ++WML+
Sbjct: 88 IKV--HNEATGKSSWWMLN 104
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna
Length = 100
Score = 72.4 bits (176), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
Query: 121 SYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYK-----TNKQGWQNSIRHNLSLNKCF 175
SY LI AI S EKRLTL+ IYE+++ + PY+K + GW+NSIRHNLSL+ F
Sbjct: 15 SYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 74
Query: 176 VKVPRHYDDPGKGNYWMLD 194
++V + GK ++WML+
Sbjct: 75 IRV--QNEGTGKSSWWMLN 91
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3CO7|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3COA|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
pdb|3COA|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
Length = 117
Score = 70.5 bits (171), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
Query: 121 SYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYK-----TNKQGWQNSIRHNLSLNKCF 175
SY LI AI S EKRLTL+ IYE+++ + PY+K + GW+NSIRHNLSL+ F
Sbjct: 15 SYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 74
Query: 176 VKVPRHYDDPGKGNYWMLD 194
++V + GK ++WML+
Sbjct: 75 IRV--QNEGTGKSSWWMLN 91
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding
pdb|3G73|B Chain B, Structure Of The Foxm1 Dna Binding
Length = 142
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYK-TNKQGWQNSIRHNLSLNKCFVKV 178
YSY A+I AI + KR+TL IY +I +FPY+K K GW+NSIRHNLSL+ FV
Sbjct: 21 YSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFV-- 78
Query: 179 PRHYDDPGKGNYWMLDASS 197
R GK ++W + S+
Sbjct: 79 -RETSANGKVSFWTIHPSA 96
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
Dna-Binding Domain Of Foxp1: Insight Into Its Domain
Swapping
Length = 87
Score = 70.1 bits (170), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 5/75 (6%)
Query: 120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVP 179
++Y +LI AI +SPEK+LTLN IY + FPY++ N W+N++RHNLSL+K FV+V
Sbjct: 7 FTYASLIRQAILESPEKQLTLNEIYNWFTRMFPYFRRNAATWKNAVRHNLSLHKYFVRV- 65
Query: 180 RHYDDPGKGNYWMLD 194
+ KG W +D
Sbjct: 66 ----ENVKGAVWTVD 76
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|G Chain G, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|H Chain H, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|I Chain I, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|J Chain J, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|K Chain K, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2AS5|F Chain F, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna.
pdb|2AS5|G Chain G, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna
Length = 93
Score = 69.7 bits (169), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVP 179
++Y LI AI +S +++LTLN IY + F Y++ N W+N++RHNLSL+KCFV+V
Sbjct: 6 FTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRV- 64
Query: 180 RHYDDPGKGNYWMLD 194
+ KG W +D
Sbjct: 65 ----ENVKGAVWTVD 75
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
pdb|2UZK|C Chain C, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
Length = 97
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
Query: 121 SYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYK-----TNKQGWQNSIRHNLSLNKCF 175
SY LI AI SP+KRLTL+ IYE+++ PY+K + GW+NSIRHNLSL+ F
Sbjct: 5 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRF 64
Query: 176 VKVPRHYDDPGKGNYWMLD 194
++V + GK ++W+++
Sbjct: 65 MRV--QNEGTGKSSWWIIN 81
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|G Chain G, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|H Chain H, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|I Chain I, Structure Of A Domain-Swapped Foxp3 Dimer
Length = 82
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVP 179
++Y LI AI ++PEK+ TLN IY + F +++ + W+N+IRHNLSL+KCFV+V
Sbjct: 5 FTYATLIRWAILEAPEKQRTLNEIYHWFTRMFAFFRNHPATWKNAIRHNLSLHKCFVRV- 63
Query: 180 RHYDDPGKGNYWMLD 194
+ KG W +D
Sbjct: 64 ----ESEKGAVWTVD 74
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain
Length = 103
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
Query: 121 SYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYK-----TNKQGWQNSIRHNLSLNKCF 175
SY LI AI SP+KRLTL+ IYE+++ PY+K + GW+NSIRHNLSL+ F
Sbjct: 13 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRF 72
Query: 176 VKVPRHYDDPGKGNYWMLD 194
++V + GK ++W+++
Sbjct: 73 MRV--QNEGTGKSSWWIIN 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,437,187
Number of Sequences: 62578
Number of extensions: 332943
Number of successful extensions: 712
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 18
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)